CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP025054	Pseudomonas aeruginosa strain PB354 plasmid pPB354_1, complete sequence	0 crisprs	NA	0	0	0	3
NZ_CP025053	Pseudomonas aeruginosa strain PB354 chromosome, complete genome	2 crisprs	csa3,DEDDh,cas3,WYL,RT,DinG	0	1	7	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_CP025054.1|WP_023131919.1|6676_6979_+|anti-CRISPR-protein-AcrE1

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Acr_ID: NZ_CP025054.1|WP_100882994.1|7001_7433_+|anti-CRISPR-protein-AcrF3

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Acr_ID: NZ_CP025054.1|WP_100882995.1|7429_7669_+|anti-CRISPR-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP025054.1|WP_023131919.1|6676_6979_+|anti-CRISPR-protein-AcrE1

6676_6979_+

100 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|15	0.99	1	1.0

NZ_CP025054.1|WP_100882994.1|7001_7433_+|anti-CRISPR-protein-AcrF3

7001_7433_+

143 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|3	0.8428571428571429	0.986013986013986	0.9785714285714285

NZ_CP025054.1|WP_100882995.1|7429_7669_+|anti-CRISPR-protein

7429_7669_+

79 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|4	0.9620253164556962	1	1.0

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025053_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025053_1

339291-339404

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025053_1

>merge|NZ_CP025053|1|339291-339404|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP025053|1|1|339291-339404|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025053.1\|WP_003084327.1\|347754_348309_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025053.1\|WP_003118763.1\|345194_346214_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP025053.1\|WP_004346728.1\|336103_337201_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP025053.1\|WP_003112941.1\|342945_343998_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP025053.1\|WP_003084299.1\|334581_335685_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP025053.1\|WP_003112942.1\|343976_344480_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP025053.1\|WP_003118764.1\|347034_347733_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226274
NZ_CP025053.1\|WP_003084290.1\|331671_333030_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP025053.1\|WP_003107781.1\|327906_328968_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP025053.1\|WP_003112938.1\|330878_331631_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP025053.1\|WP_003162098.1\|327178_327844_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP025053.1\|WP_003118761.1\|340447_342835_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP025053.1\|WP_003118762.1\|344584_345196_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP025053.1\|WP_003142590.1\|346233_346986_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025053.1\|WP_003084297.1\|333095_334466_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP025053.1\|WP_003084303.1\|337255_338410_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP025053.1\|WP_100882520.1\|326137_327016_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP025053.1\|WP_003112945.1\|348574_349069_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP025053.1\|WP_100882521.1\|349071_349764_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP025053.1\|WP_003112937.1\|329223_330600_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252

Protein	Function_ID	Function_description	E-value
NZ_CP025053.1\|WP_100882521.1\|349071_349764_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	7.356e-79
NZ_CP025053.1\|WP_003118763.1\|345194_346214_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
NZ_CP025053.1\|WP_004346728.1\|336103_337201_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP025053.1\|WP_003112941.1\|342945_343998_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP025053.1\|WP_003084299.1\|334581_335685_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP025053.1\|WP_003118764.1\|347034_347733_+\|hypothetical-protein	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NZ_CP025053.1\|WP_003084290.1\|331671_333030_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP025053.1\|WP_003107781.1\|327906_328968_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_CP025053.1\|WP_003112938.1\|330878_331631_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_CP025053.1\|WP_003162098.1\|327178_327844_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.25164e-09
NZ_CP025053.1\|WP_003118761.1\|340447_342835_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP025053.1\|WP_003118762.1\|344584_345196_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_CP025053.1\|WP_003084297.1\|333095_334466_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP025053.1\|WP_003084303.1\|337255_338410_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP025053.1\|WP_100882520.1\|326137_327016_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP025053.1\|WP_003112945.1\|348574_349069_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP025053.1\|WP_003112937.1\|329223_330600_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161

>NZ_CP025053.1|WP_003084303.1|337255_338410_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP025053.1|WP_004346728.1|336103_337201_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKASDNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP025053.1|WP_003084299.1|334581_335685_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP025053.1|WP_003084297.1|333095_334466_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP025053.1|WP_003084290.1|331671_333030_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP025053.1|WP_003112938.1|330878_331631_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP025053.1|WP_003112937.1|329223_330600_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP025053.1|WP_003107781.1|327906_328968_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP025053.1|WP_003162098.1|327178_327844_-|TetR/AcrR-family-transcriptional-regulator
MQPTSPTRKPRASSQARIAAILDAARDLLADEGIGGLSIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NZ_CP025053.1|WP_100882520.1|326137_327016_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGTNLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP025053.1|WP_003118761.1|340447_342835_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLAVAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLIAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGVSSGRTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWKGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAADADSPWWDDRRTERRETRADIVRTAWNASLAHLRSTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP025053.1|WP_003112941.1|342945_343998_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP025053.1|WP_003112942.1|343976_344480_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP025053.1|WP_003118762.1|344584_345196_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP025053.1|WP_003118763.1|345194_346214_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP025053.1|WP_003142590.1|346233_346986_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPTEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP025053.1|WP_003118764.1|347034_347733_+|hypothetical-protein
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP025053.1|WP_003084327.1|347754_348309_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP025053.1|WP_003112945.1|348574_349069_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP025053.1|WP_100882521.1|349071_349764_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALEDRLTAPLRR

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Crispr_ID: NZ_CP025053_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025053_2

1948320-1948421

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP025053_2

>merge|NZ_CP025053|2|1948320-1948421|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_CP025053|2|2|1948320-1948421|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025053.1\|WP_031630802.1\|1950262_1952095_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP025053.1\|WP_003114810.1\|1947404_1948031_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
NZ_CP025053.1\|WP_003091534.1\|1953536_1954466_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP025053.1\|WP_003091547.1\|1943555_1943867_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP025053.1\|WP_031628772.1\|1945608_1947408_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP025053.1\|WP_003114811.1\|1948557_1949682_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_CP025053.1\|WP_003091533.1\|1954665_1954983_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025053.1\|WP_003116401.1\|1955875_1956775_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP025053.1\|WP_003114807.1\|1940461_1941823_-\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_CP025053.1\|WP_100882638.1\|1952702_1953530_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP025053.1\|WP_003452840.1\|1942480_1943338_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP025053.1\|WP_003091546.1\|1943863_1945519_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP025053.1\|WP_003109191.1\|1956784_1957120_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP025053.1\|WP_003114814.1\|1955129_1955771_+\|FMN-dependent-NADH-azoreductase-3	unknown	unknown	gnl\|CDD\|224103
NZ_CP025053.1\|WP_003091551.1\|1941965_1942187_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP025053.1\|WP_003109182.1\|1948139_1948298_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP025053.1\|WP_003091540.1\|1949714_1949981_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP025053.1\|WP_003116397.1\|1938656_1939514_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP025053.1\|WP_003114806.1\|1939654_1940458_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP025053.1\|WP_003114812.1\|1952157_1952721_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824

Protein	Function_ID	Function_description	E-value
NZ_CP025053.1\|WP_031630802.1\|1950262_1952095_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.90044e-156
NZ_CP025053.1\|WP_003114810.1\|1947404_1948031_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
NZ_CP025053.1\|WP_003091534.1\|1953536_1954466_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_CP025053.1\|WP_003091547.1\|1943555_1943867_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_CP025053.1\|WP_031628772.1\|1945608_1947408_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_CP025053.1\|WP_003114811.1\|1948557_1949682_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP025053.1\|WP_003116401.1\|1955875_1956775_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_CP025053.1\|WP_100882638.1\|1952702_1953530_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	8.62263e-42
NZ_CP025053.1\|WP_003452840.1\|1942480_1943338_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.55277e-117
NZ_CP025053.1\|WP_003091546.1\|1943863_1945519_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP025053.1\|WP_003109191.1\|1956784_1957120_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_CP025053.1\|WP_003114814.1\|1955129_1955771_+\|FMN-dependent-NADH-azoreductase-3	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_CP025053.1\|WP_003091551.1\|1941965_1942187_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33
NZ_CP025053.1\|WP_003109182.1\|1948139_1948298_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_CP025053.1\|WP_003091540.1\|1949714_1949981_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_CP025053.1\|WP_003116397.1\|1938656_1939514_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96
NZ_CP025053.1\|WP_003114806.1\|1939654_1940458_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	6.05055e-101
NZ_CP025053.1\|WP_003114812.1\|1952157_1952721_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93

>NZ_CP025053.1|WP_003109182.1|1948139_1948298_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_CP025053.1|WP_003114810.1|1947404_1948031_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_CP025053.1|WP_031628772.1|1945608_1947408_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRETLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_CP025053.1|WP_003091546.1|1943863_1945519_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_CP025053.1|WP_003091547.1|1943555_1943867_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_CP025053.1|WP_003452840.1|1942480_1943338_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWRDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_CP025053.1|WP_003091551.1|1941965_1942187_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>NZ_CP025053.1|WP_003114807.1|1940461_1941823_-|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTQVASAALTQQAGN
>NZ_CP025053.1|WP_003114806.1|1939654_1940458_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGFYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_CP025053.1|WP_003116397.1|1938656_1939514_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_CP025053.1|WP_003114811.1|1948557_1949682_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_CP025053.1|WP_003091540.1|1949714_1949981_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_CP025053.1|WP_031630802.1|1950262_1952095_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFHVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_CP025053.1|WP_003114812.1|1952157_1952721_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_CP025053.1|WP_100882638.1|1952702_1953530_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGRYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLQTIGRALGRLLFPKAEQAVLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_CP025053.1|WP_003091534.1|1953536_1954466_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_CP025053.1|WP_003091533.1|1954665_1954983_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_CP025053.1|WP_003114814.1|1955129_1955771_+|FMN-dependent-NADH-azoreductase-3
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_CP025053.1|WP_003116401.1|1955875_1956775_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_CP025053.1|WP_003109191.1|1956784_1957120_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025053_2	2.1\|1948345\|52\|NZ_CP025053\|CRISPRCasFinder	1948345-1948396	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 2.1|1948345|52|NZ_CP025053|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

622161 : 744018

130

Pseudomonas_phage(53.85%)

terminase,lysis,head,tail,tRNA,portal,plate,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033876353.1\|622161_623283_-	Fic family protein	A0A1V0E025	Clostridioides_phage	4.1e-08	25.8
WP_003113217.1\|623541_623679_-	hypothetical protein	NA	NA	NA	NA
WP_019725766.1\|624281_624464_+	type II toxin-antitoxin system HicA family toxin	A0A2H4JDU5	uncultured_Caudovirales_phage	2.2e-09	54.2
WP_019725767.1\|624496_624919_+	transcriptional regulator	A0A2H4JFV9	uncultured_Caudovirales_phage	6.1e-26	46.7
WP_031672615.1\|625164_626136_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	2.9e-172	94.1
WP_023126965.1\|626120_626813_-	hypothetical protein	A0A2I7RNK1	Vibrio_phage	1.5e-40	40.3
WP_031672617.1\|626809_627352_-	hypothetical protein	A0A0U4J942	Pseudomonas_phage	1.3e-81	87.1
WP_100882537.1\|627348_628272_-	hypothetical protein	NA	NA	NA	NA
WP_100199590.1\|628268_628586_-\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	3.3e-32	70.3
WP_019725774.1\|628741_631363_-	hypothetical protein	Q9ZXK6	Pseudomonas_virus	5.9e-159	53.7
WP_100882538.1\|631372_631897_-\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	8.6e-94	95.4
WP_034018116.1\|631889_633062_-	phage protein	A0A0U4JJ14	Pseudomonas_phage	4.0e-208	91.3
WP_019725777.1\|633058_633376_-	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	1.2e-45	94.2
WP_100882539.1\|633372_635742_-\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	7.7e-251	64.1
WP_031673345.1\|635919_636207_-	phage protein	A0A0U4B0P2	Pseudomonas_phage	1.4e-34	80.0
WP_031673343.1\|636203_636719_-\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	6.1e-44	70.8
WP_031673342.1\|636715_637177_-	lysozyme	A0A0U4JP67	Pseudomonas_phage	1.5e-73	94.1
WP_031673341.1\|637173_637479_-	hypothetical protein	A0A0H5AUD7	Pseudomonas_phage	1.7e-09	38.6
WP_100882540.1\|637475_637688_-	conjugal transfer protein TraR	A0A0U4IIN4	Pseudomonas_phage	2.1e-27	82.6
WP_023122750.1\|637687_638137_-	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	4.0e-68	85.2
WP_023107713.1\|638140_639256_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	6.5e-176	83.3
WP_031673337.1\|639268_639937_-	virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	6.4e-110	92.2
WP_019725788.1\|639929_640367_-\|tail	tail protein	A0A0U4IBS7	Pseudomonas_phage	3.8e-71	91.0
WP_019725789.1\|640366_640828_-\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	3.8e-77	95.4
WP_100882541.1\|640925_641660_-\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	1.0e-132	99.6
WP_012074147.1\|641656_642679_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	1.1e-193	100.0
WP_100882542.1\|642678_643824_-\|capsid	capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	4.3e-146	100.0
WP_100882543.1\|643789_645838_+\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	0.0e+00	99.7
WP_025982286.1\|645749_646604_+\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	3.1e-133	100.0
WP_019725794.1\|646648_646906_+	transcriptional regulator	R9TNQ2	Vibrio_phage	3.6e-13	42.9
WP_019725795.1\|647471_647750_-	hypothetical protein	A0A0U4B0R1	Pseudomonas_phage	1.4e-47	100.0
WP_019725796.1\|647746_647977_-	hypothetical protein	NA	NA	NA	NA
WP_019725797.1\|647973_648219_-	Arc family DNA-binding protein	A0A0U4B0M9	Pseudomonas_phage	1.0e-36	100.0
WP_019725798.1\|648211_648478_-	hypothetical protein	NA	NA	NA	NA
WP_019725799.1\|648548_648908_-	hypothetical protein	A0A0U4JXA4	Pseudomonas_phage	3.5e-62	100.0
WP_100199592.1\|648937_649261_-	hypothetical protein	A0A0U4JP55	Pseudomonas_phage	4.4e-56	100.0
WP_019725801.1\|649300_649702_-	hypothetical protein	A0A0U4IIM6	Pseudomonas_phage	6.4e-73	100.0
WP_100882544.1\|650143_652834_-	hypothetical protein	A0A0U3TH43	Pseudomonas_phage	0.0e+00	99.9
WP_019725803.1\|652843_653074_-	hypothetical protein	A0A0U4KLD7	Pseudomonas_phage	8.2e-33	100.0
WP_019725804.1\|653171_653411_+	helix-turn-helix transcriptional regulator	A0A0U4ISL7	Pseudomonas_phage	2.6e-37	100.0
WP_100882545.1\|654634_658372_-	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	4.8e-13	35.4
WP_003085035.1\|658478_660332_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.8
WP_023910070.1\|660411_662406_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.8e-73	40.7
WP_003085042.1\|662488_662938_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.0e-18	38.8
WP_003085057.1\|663007_663223_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_003129196.1\|663423_664449_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_003085061.1\|664527_665097_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|665180_665534_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_023122963.1\|665524_666067_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003099584.1\|666039_667272_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
WP_023113350.1\|667315_667822_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|667916_669470_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|669466_670738_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|670838_672761_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|673039_673372_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003113213.1\|673415_674267_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|674266_674647_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003099569.1\|674683_675490_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_031633752.1\|675605_676592_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|676588_677881_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_031633753.1\|677861_680636_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_023128360.1\|680762_681779_+	phosphotransferase	NA	NA	NA	NA
WP_003117959.1\|681775_682450_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003099547.1\|682451_683210_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_003099546.1\|683210_684272_-	DUF3530 family protein	NA	NA	NA	NA
WP_003113207.1\|684423_686817_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|686862_687495_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|687623_688658_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003085109.1\|688891_690001_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_100882546.1\|690056_691103_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003109044.1\|691217_692465_+	ABC transporter permease	NA	NA	NA	NA
WP_003085119.1\|692570_693401_+	ABC transporter permease	NA	NA	NA	NA
WP_100882547.1\|693524_694199_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003099532.1\|694198_695017_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_015649712.1\|695089_696568_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003113203.1\|696885_697200_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_003113202.1\|697299_698070_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_100882548.1\|698527_698728_+	conjugal transfer protein TraR	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003459419.1\|698775_699135_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|699497_699947_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003101620.1\|699968_700484_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.8e-32	43.4
WP_003121844.1\|700480_701038_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.0e-45	70.3
WP_003085143.1\|701190_701517_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003161928.1\|701513_702401_+	bacteriophage protein	S4TNY7	Salmonella_phage	4.1e-88	59.8
WP_003118911.1\|702393_702927_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.9e-62	64.6
WP_003161927.1\|702928_705034_+\|tail	phage tail fiber protein	Q9ZXK6	Pseudomonas_virus	3.0e-222	52.7
WP_016852415.1\|705041_705482_+	hypothetical protein	NA	NA	NA	NA
WP_019681189.1\|705524_706685_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	2.0e-188	83.2
WP_003085175.1\|706697_707201_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_100882549.1\|707215_707560_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_031633756.1\|707729_709967_+\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_100882550.1\|709976_710849_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.1e-75	51.7
WP_003101635.1\|710823_711030_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003109053.1\|711087_712077_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.3e-106	55.8
WP_031633757.1\|712109_712739_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	3.2e-87	78.5
WP_004355109.1\|712735_713098_+	hypothetical protein	NA	NA	NA	NA
WP_003118919.1\|713094_713352_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003113190.1\|713668_714163_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
WP_004352265.1\|714174_714522_+	hypothetical protein	NA	NA	NA	NA
WP_003113188.1\|714551_714806_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
WP_031633760.1\|714852_716691_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	3.4e-28	35.8
WP_003113186.1\|716683_717025_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
WP_049290815.1\|717032_717728_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	1.5e-69	50.2
WP_003113184.1\|717730_718501_+	hypothetical protein	A0A2D1GNP8	Pseudomonas_phage	4.2e-81	55.6
WP_034083863.1\|718555_719158_+\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	6.5e-53	57.3
WP_031633762.1\|719216_722876_+\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	57.2
WP_157814485.1\|723173_723851_+	hypothetical protein	NA	NA	NA	NA
WP_031633763.1\|723938_724991_+	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	6.4e-64	50.6
WP_003113177.1\|724990_725293_+	hypothetical protein	A0A0H5B141	Pseudomonas_phage	4.4e-34	71.0
WP_003161916.1\|725289_725520_+	hypothetical protein	C8ZKF3	Pseudomonas_phage	1.4e-24	70.3
WP_023098405.1\|725938_726544_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.0e-75	65.8
WP_003085203.1\|726545_727595_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|727591_728428_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9
WP_003085214.1\|728489_729134_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003085219.1\|729405_729828_+	OsmC family protein	NA	NA	NA	NA
WP_003085223.1\|730147_730942_+	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003085224.1\|730996_731644_-	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA
WP_003085225.1\|731743_732082_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003101642.1\|732160_733642_+	AAA family ATPase	U5XJW0	Phormidium_phage	6.7e-67	33.5
WP_003113172.1\|733681_734482_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003459458.1\|734542_735619_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003117983.1\|735740_736709_-	nitronate monooxygenase	NA	NA	NA	NA
WP_003085245.1\|736725_737148_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_058180648.1\|737438_738473_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_100882551.1\|738472_739192_+	hypothetical protein	NA	NA	NA	NA
WP_003120826.1\|739192_739615_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_003085254.1\|739692_740043_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
WP_016252941.1\|740096_741188_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_073652934.1\|741190_742534_-	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	3.0e-18	44.1
WP_003101660.1\|742818_744018_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

1240916 : 1277431

uncultured_Caudovirales_phage(38.1%)

terminase,integrase,head,tRNA,holin,portal,protease

attL 1250980:1250997|attR 1273961:1273978

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003113794.1\|1240916_1243769_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.0e-148	37.0
WP_023085547.1\|1243889_1244258_-	hypothetical protein	NA	NA	NA	NA
WP_003100593.1\|1244269_1244698_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_003092867.1\|1244694_1246182_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.0e-51	36.1
WP_023113283.1\|1246518_1247331_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_034050628.1\|1247414_1248338_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003092864.1\|1248529_1249648_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_003092863.1\|1249640_1250708_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_003100603.1\|1250839_1251337_-	RDD family protein	NA	NA	NA	NA
1250980:1250997	attL	NA	NA	NA	NA
WP_003092861.1\|1251466_1253047_+	EAL domain-containing protein	NA	NA	NA	NA
WP_079388247.1\|1253543_1254545_+\|integrase	site-specific integrase	A0A0A0YR56	Pseudomonas_phage	6.8e-156	98.6
WP_075116609.1\|1254625_1255612_+	hypothetical protein	A4PE73	Ralstonia_virus	6.4e-50	38.4
WP_034065893.1\|1255614_1255902_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_100882582.1\|1255959_1256259_-	hypothetical protein	A0A0A0YRS6	Pseudomonas_phage	4.0e-48	93.0
WP_100882583.1\|1256367_1257720_-	hypothetical protein	H2BD37	Pseudomonas_phage	4.1e-79	43.9
WP_100882969.1\|1257706_1258138_-	hypothetical protein	H2BD44	Pseudomonas_phage	6.0e-61	90.0
WP_100882584.1\|1258134_1260132_-	DNA cytosine methyltransferase	J7HXB9	Pseudomonas_phage	0.0e+00	94.7
WP_086823673.1\|1260128_1260674_-	phosphohydrolase	A0A2D1GNL9	Pseudomonas_phage	2.4e-30	47.7
WP_031630972.1\|1260682_1261417_-	hypothetical protein	NA	NA	NA	NA
WP_031630969.1\|1261842_1262079_-	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	1.4e-06	39.0
WP_031630967.1\|1262075_1262444_-	hypothetical protein	NA	NA	NA	NA
WP_025325120.1\|1262440_1262725_-	hypothetical protein	NA	NA	NA	NA
WP_100882585.1\|1262736_1263306_-	deoxynucleotide monophosphate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	3.0e-44	49.5
WP_031630962.1\|1263302_1263608_-	hypothetical protein	NA	NA	NA	NA
WP_078452081.1\|1263977_1264643_-	peptidase S24	U5P0T5	Shigella_phage	3.8e-22	31.9
WP_031630957.1\|1264724_1264958_+	hypothetical protein	NA	NA	NA	NA
WP_019726643.1\|1265121_1265622_+	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	1.6e-33	61.3
WP_019726642.1\|1265614_1265857_+	repressor, PtrB	Q9ZXI6	Pseudomonas_virus	2.7e-10	53.0
WP_031632199.1\|1265853_1268592_+	DNA primase	A0A2H4JF22	uncultured_Caudovirales_phage	0.0e+00	64.2
WP_157814486.1\|1268931_1269489_+	hypothetical protein	NA	NA	NA	NA
WP_031630948.1\|1269687_1270053_+	hypothetical protein	E5E3W4	Burkholderia_phage	1.0e-13	48.2
WP_025325111.1\|1270057_1270336_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_100882586.1\|1270338_1271076_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	1.1e-43	46.6
WP_023087718.1\|1271331_1271922_+	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	8.8e-47	54.5
WP_100882587.1\|1271925_1273941_+\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	3.3e-258	63.9
WP_019396964.1\|1273952_1274177_+	hypothetical protein	NA	NA	NA	NA
1273961:1273978	attR	NA	NA	NA	NA
WP_100882588.1\|1274176_1275643_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	2.5e-175	65.8
WP_100882589.1\|1275626_1276799_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.0e-86	49.6
WP_023096402.1\|1276795_1277431_+\|head	head decoration protein	NA	NA	NA	NA

DBSCAN-SWA_3

1284074 : 1301351

Pseudomonas_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100882591.1\|1284074_1287626_+	hypothetical protein	A0A0M4U447	Ralstonia_phage	2.2e-177	34.9
WP_016561962.1\|1287625_1288627_+	hypothetical protein	NA	NA	NA	NA
WP_023103635.1\|1288623_1289484_+	hypothetical protein	NA	NA	NA	NA
WP_100882592.1\|1289480_1291241_+	hypothetical protein	A0A2I7S8R8	Vibrio_phage	1.1e-23	24.1
WP_003096116.1\|1291240_1291477_+	hypothetical protein	NA	NA	NA	NA
WP_100882593.1\|1291722_1292352_+	glycoside hydrolase family 19 protein	J7I4M6	Pseudomonas_phage	3.9e-101	88.5
WP_100882594.1\|1292348_1292717_+	hypothetical protein	H2BDA0	Pseudomonas_phage	4.8e-43	80.3
WP_100882595.1\|1292713_1292974_+	hypothetical protein	H2BDD7	Pseudomonas_virus	1.4e-28	75.6
WP_058164654.1\|1293118_1293922_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.4e-100	65.0
WP_023130683.1\|1293991_1294258_+	hypothetical protein	L7TP56	Pseudomonas_virus	3.5e-43	96.6
WP_100882596.1\|1294239_1294926_-	SOS response-associated peptidase	A0A2K8I970	Pseudomonas_phage	5.0e-118	87.7
WP_043553536.1\|1294963_1295479_-	hypothetical protein	L7TIE6	Pseudomonas_virus	4.5e-95	94.7
WP_003143120.1\|1295941_1296985_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_003100607.1\|1296997_1298116_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.7e-96	49.9
WP_003092856.1\|1298159_1298498_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.8e-11	42.4
WP_003100609.1\|1298557_1300420_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_003100612.1\|1300430_1301351_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.9e-51	43.9

DBSCAN-SWA_4

1523616 : 1532645

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1523616_1524252_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_003143263.1\|1524297_1525191_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1525295_1526300_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|1526726_1527050_-	Ferredoxin 1	NA	NA	NA	NA
WP_003113873.1\|1527116_1529684_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_033993593.1\|1529809_1530817_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|1530964_1531471_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|1531604_1532645_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_5

2647736 : 2654630

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003160440.1\|2647736_2649017_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.8e-98	45.4
WP_003160439.1\|2649018_2650416_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097628.1\|2650420_2651395_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003097625.1\|2651482_2652466_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.5e-141	74.0
WP_003119979.1\|2652462_2652798_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003090391.1\|2652794_2653100_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|2653099_2653459_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090387.1\|2653455_2653851_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090386.1\|2653961_2654630_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_6

3438565 : 3493980

Pseudomonas_phage(72.73%)

terminase,integrase,head,tail,holin,portal,protease,capsid

attL 3436057:3436072|attR 3493707:3493722

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3436057:3436072	attL	NA	NA	NA	NA
WP_100882743.1\|3438565_3438829_-	hypothetical protein	J7I447	Pseudomonas_phage	1.1e-44	96.6
WP_100882744.1\|3438864_3439125_-	hypothetical protein	H2BDD7	Pseudomonas_virus	2.6e-35	88.4
WP_100882745.1\|3439222_3439525_+	hypothetical protein	NA	NA	NA	NA
WP_157814488.1\|3439524_3439701_+	hypothetical protein	NA	NA	NA	NA
WP_100882747.1\|3439866_3440259_-	hypothetical protein	H2BDA0	Pseudomonas_phage	1.1e-45	84.4
WP_025297798.1\|3440255_3440690_-	lysozyme	A0A0S2SYD0	Pseudomonas_phage	5.1e-76	100.0
WP_019395862.1\|3441021_3441354_-	hypothetical protein	A0A127KNU7	Pseudomonas_phage	1.0e-39	97.5
WP_100882748.1\|3441815_3443072_-	oligosaccharide repeat unit polymerase	NA	NA	NA	NA
WP_034080588.1\|3443136_3444807_-	hypothetical protein	A0A2H5BQA0	Pseudomonas_phage	6.8e-177	71.3
WP_100882749.1\|3444867_3447597_-	hypothetical protein	H2BD95	Pseudomonas_phage	0.0e+00	98.2
WP_033946887.1\|3447568_3447976_-	C40 family peptidase	J7HX80	Pseudomonas_phage	1.1e-72	97.0
WP_033867886.1\|3447980_3448472_-	DUF1833 domain-containing protein	H2BDC5	Pseudomonas_virus	3.5e-89	98.8
WP_033936236.1\|3448455_3448935_-	hypothetical protein	Q9MCA0	Pseudomonas_phage	2.5e-92	98.1
WP_100882750.1\|3448931_3451460_-\|tail	phage tail tape measure protein	A0A0U4JEA4	Pseudomonas_phage	0.0e+00	89.9
WP_003158969.1\|3451786_3452146_-	hypothetical protein	Q9MCA4	Pseudomonas_phage	1.2e-59	100.0
WP_034076445.1\|3452155_3452677_-\|tail	phage major tail protein	A0A0U4ISC1	Pseudomonas_phage	2.6e-95	99.4
WP_003158971.1\|3452751_3453117_-	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	9.9e-65	100.0
WP_100882751.1\|3453119_3453614_-	HK97 gp10 family phage protein	Q9MCA7	Pseudomonas_phage	2.6e-76	98.6
WP_100882975.1\|3453606_3454164_-	methyltransferase domain-containing protein	A0A0U4IIB3	Pseudomonas_phage	1.0e-108	97.8
WP_003140663.1\|3454174_3455002_-	hypothetical protein	D4FUL8	Pseudomonas_phage	1.2e-147	87.3
WP_003140666.1\|3455005_3455365_-	hypothetical protein	A0A2H4J3Y5	uncultured_Caudovirales_phage	1.0e-42	70.0
WP_023081903.1\|3455426_3456149_-	hypothetical protein	A0A0S2SYC0	Pseudomonas_phage	8.9e-134	100.0
WP_033969598.1\|3456353_3456710_-\|head	phage head closure protein	Q9XJT0	Pseudomonas_phage	1.2e-59	94.1
WP_012614021.1\|3456710_3457031_-\|head,tail	phage gp6-like head-tail connector protein	A0A0U4JX27	Pseudomonas_phage	1.8e-54	100.0
WP_012614020.1\|3457011_3457608_-	hypothetical protein	H2BDB2	Pseudomonas_virus	2.8e-109	92.4
WP_033979590.1\|3457774_3458962_-\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	8.4e-214	99.0
WP_033955147.1\|3458958_3459849_-\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	1.7e-166	100.0
WP_033979592.1\|3459980_3461243_-\|portal	phage portal protein	Q9XJT5	Pseudomonas_phage	1.4e-235	97.1
WP_033979594.1\|3461396_3463088_-\|terminase	terminase large subunit	A0A0U4B0C7	Pseudomonas_phage	0.0e+00	98.2
WP_012614015.1\|3463089_3463470_-	hypothetical protein	A0A0U4JIP6	Pseudomonas_phage	1.2e-65	99.2
WP_058200136.1\|3463682_3463997_-	HNH endonuclease	H2BDK0	Pseudomonas_virus	1.8e-54	97.1
WP_033942785.1\|3464246_3464498_-	hypothetical protein	Q9MC38	Pseudomonas_phage	3.1e-41	98.8
WP_100882753.1\|3464497_3464716_-	hypothetical protein	H2BDJ7	Pseudomonas_virus	1.2e-25	87.9
WP_003101053.1\|3465066_3465351_-\|holin	phage holin family protein	A0A0U4J8T9	Pseudomonas_phage	5.0e-48	100.0
WP_023104105.1\|3465343_3465712_-	hypothetical protein	A0A0S2SYH4	Pseudomonas_phage	1.3e-61	100.0
WP_100883011.1\|3466434_3467013_-	hypothetical protein	A0A125RNL1	Pseudomonas_phage	5.5e-102	96.9
WP_033945916.1\|3467080_3467398_-	hypothetical protein	Q9MC45	Pseudomonas_phage	8.1e-47	94.3
WP_100883012.1\|3467397_3468042_-	hypothetical protein	A0A0S2SY91	Pseudomonas_phage	2.2e-107	91.1
WP_024007938.1\|3468038_3468509_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	3.5e-62	72.4
WP_100883013.1\|3468501_3468717_-	conjugal transfer protein TraR	A0A0S2SYW7	Pseudomonas_phage	1.4e-23	78.6
WP_034011419.1\|3468718_3469228_-	hypothetical protein	H2BDI1	Pseudomonas_virus	5.8e-87	99.4
WP_023081923.1\|3469340_3470726_-	replicative DNA helicase	A0A127KNK8	Pseudomonas_phage	2.7e-123	52.3
WP_073663221.1\|3470718_3471414_-	helix-turn-helix domain-containing protein	H2BD69	Pseudomonas_phage	1.0e-30	62.5
WP_052154638.1\|3471425_3472016_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_100883014.1\|3472213_3472786_-	hypothetical protein	A0A0S2SYA8	Pseudomonas_phage	4.8e-98	98.9
WP_057391093.1\|3472821_3473058_-	hypothetical protein	O48419	Enterobacteria_phage	1.5e-05	49.1
WP_078451938.1\|3473256_3473895_+	helix-turn-helix transcriptional regulator	W6MVG5	Pseudomonas_phage	2.1e-54	63.5
WP_100883015.1\|3474605_3475127_+	HNH endonuclease	A0A1B1W266	Salmonella_phage	7.6e-26	43.2
WP_157814489.1\|3475199_3475361_+	hypothetical protein	A0A0S3UG60	Pseudomonas_phage	1.3e-24	100.0
WP_033942813.1\|3475403_3475622_+	hypothetical protein	NA	NA	NA	NA
WP_100882767.1\|3476208_3476697_+	DUF1566 domain-containing protein	H2BDH2	Pseudomonas_virus	1.1e-74	88.3
WP_100882976.1\|3476892_3477399_+	DUF1566 domain-containing protein	A0A0A0YR68	Pseudomonas_phage	8.4e-30	49.3
WP_023875446.1\|3477436_3477793_+	four helix bundle protein	NA	NA	NA	NA
WP_100882768.1\|3478065_3479205_+	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	6.5e-46	34.4
WP_077148986.1\|3479227_3479440_+	DUF551 domain-containing protein	W6MW45	Pseudomonas_phage	7.3e-36	97.0
WP_100882769.1\|3479456_3479729_+	hypothetical protein	NA	NA	NA	NA
WP_096306278.1\|3479763_3480177_+	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	1.3e-76	99.3
WP_023098762.1\|3480667_3480892_+	hypothetical protein	A0A0U4JX53	Pseudomonas_phage	3.7e-38	100.0
WP_100882770.1\|3480888_3481248_+	hypothetical protein	B5WZX0	Pseudomonas_phage	5.7e-57	86.8
WP_157814490.1\|3481244_3481781_+	hypothetical protein	A0A2H4J611	uncultured_Caudovirales_phage	2.4e-19	33.7
WP_100882773.1\|3482096_3482312_+	hypothetical protein	H2BDF4	Pseudomonas_virus	2.3e-13	59.0
WP_100882774.1\|3482618_3483683_+	hypothetical protein	B5WZW5	Pseudomonas_phage	4.6e-86	97.5
WP_079864584.1\|3483823_3484444_+	ERF family protein	Q9MC70	Pseudomonas_phage	2.3e-106	100.0
WP_003097967.1\|3484447_3485074_+	exonuclease	A0A125RNR2	Pseudomonas_phage	6.4e-120	100.0
WP_100882775.1\|3485070_3485406_+	LytTR family transcriptional regulator	H2BDF6	Pseudomonas_virus	1.9e-54	96.4
WP_100882777.1\|3487197_3487476_+	hypothetical protein	W6MVL9	Pseudomonas_phage	2.7e-30	65.1
WP_100882778.1\|3487468_3487849_+	hypothetical protein	A0A0U4K5D6	Pseudomonas_phage	4.6e-57	94.4
WP_100882779.1\|3487845_3488259_+	hypothetical protein	A0A218M341	Acidovorax_phage	2.6e-05	62.9
WP_157814491.1\|3488432_3489014_+	hypothetical protein	NA	NA	NA	NA
WP_100882780.1\|3489168_3489441_+	hypothetical protein	A0A127KNQ8	Pseudomonas_phage	1.7e-29	73.6
WP_100882781.1\|3489437_3489704_+	hypothetical protein	NA	NA	NA	NA
WP_100882782.1\|3489696_3490518_+	ead/Ea22-like family protein	Q9MC82	Pseudomonas_phage	1.4e-53	52.7
WP_100882977.1\|3490685_3490892_+	hypothetical protein	B5WZV2	Pseudomonas_phage	4.8e-24	96.6
WP_100882783.1\|3491142_3492360_+\|integrase	site-specific integrase	A0A0U4B0G7	Pseudomonas_phage	9.5e-229	99.0
WP_003111315.1\|3492390_3493980_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	5.9e-61	28.3
3493707:3493722	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4788430 : 4880764

113

Pseudomonas_phage(69.86%)

terminase,integrase,head,tail,tRNA,holin,portal,protease,capsid

attL 4821203:4821222|attR 4884513:4884532

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003085573.1\|4788430_4789399_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_003101974.1\|4789489_4790236_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_003101972.1\|4790228_4790930_-	DNA repair protein RecO	NA	NA	NA	NA
WP_003085566.1\|4790990_4791908_-	GTPase Era	NA	NA	NA	NA
WP_003085565.1\|4791900_4792590_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.2e-24	31.4
WP_023086589.1\|4792586_4792964_-	DUF4845 domain-containing protein	NA	NA	NA	NA
WP_003101969.1\|4793132_4793987_-	signal peptidase I	NA	NA	NA	NA
WP_003085555.1\|4793992_4795792_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	1.5e-20	38.5
WP_003101964.1\|4795941_4797366_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	3.4e-28	32.0
WP_003110245.1\|4797405_4797861_-	positive regulator for alginate biosynthesis MucC	NA	NA	NA	NA
WP_003101960.1\|4797857_4798808_-	sigma factor AlgU regulatory protein MucB	NA	NA	NA	NA
WP_003101958.1\|4798816_4799401_-	sigma factor AlgU negative regulatory protein	NA	NA	NA	NA
WP_003085543.1\|4799432_4800014_-	RNA polymerase sigma-H factor	NA	NA	NA	NA
WP_023118258.1\|4800422_4802039_+	L-aspartate oxidase	NA	NA	NA	NA
WP_003114181.1\|4802007_4802460_-	hypothetical protein	NA	NA	NA	NA
WP_003085532.1\|4802443_4802698_-	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_003101947.1\|4802970_4803915_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_003085528.1\|4804015_4804852_+	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	2.5e-26	36.6
WP_003101943.1\|4804860_4806243_-	sensor histidine kinase	NA	NA	NA	NA
WP_003085524.1\|4806235_4806907_-	response regulator	NA	NA	NA	NA
WP_003114177.1\|4807117_4808401_+	OprD family porin	NA	NA	NA	NA
WP_003085519.1\|4808430_4809414_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003101933.1\|4809462_4809933_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_023116055.1\|4809943_4811461_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_003114172.1\|4811453_4812491_+	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_003106436.1\|4812617_4813313_-	uracil-DNA glycosylase	A0A0A7D9F8	Equid_alphaherpesvirus	1.0e-49	45.2
WP_023104850.1\|4813412_4814234_-	hypothetical protein	NA	NA	NA	NA
WP_003106441.1\|4814290_4815172_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003116510.1\|4815304_4816813_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_003085499.1\|4816824_4817988_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_003085498.1\|4818053_4818872_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_003114169.1\|4818930_4820034_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003454697.1\|4820145_4821042_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_023120841.1\|4821098_4821743_+	two pore domain potassium channel family protein	NA	NA	NA	NA
4821203:4821222	attL	NA	NA	NA	NA
WP_003098346.1\|4821858_4822500_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_003159576.1\|4822534_4824511_-	alkyl/aryl-sulfatase	M1I0S7	Paramecium_bursaria_Chlorella_virus	2.4e-160	44.8
WP_100882867.1\|4824688_4824952_-	hypothetical protein	J7I447	Pseudomonas_phage	5.9e-43	94.3
WP_073658712.1\|4824987_4825248_-	hypothetical protein	B5WZU5	Pseudomonas_phage	9.0e-36	89.5
WP_100882868.1\|4825244_4825613_-	hypothetical protein	H2BDD6	Pseudomonas_virus	3.2e-47	86.9
WP_100882869.1\|4825609_4826239_-	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.2e-113	97.6
WP_100882870.1\|4826283_4828359_-	acyltransferase	B5WZU0	Pseudomonas_phage	9.0e-62	35.7
WP_100882871.1\|4828371_4830048_-	hypothetical protein	A0A291I973	Pseudomonas_phage	5.2e-185	72.6
WP_100882749.1\|4830108_4832838_-	hypothetical protein	H2BD95	Pseudomonas_phage	0.0e+00	98.2
WP_033946887.1\|4832809_4833217_-	C40 family peptidase	J7HX80	Pseudomonas_phage	1.1e-72	97.0
WP_033867886.1\|4833221_4833713_-	DUF1833 domain-containing protein	H2BDC5	Pseudomonas_virus	3.5e-89	98.8
WP_033936236.1\|4833696_4834176_-	hypothetical protein	Q9MCA0	Pseudomonas_phage	2.5e-92	98.1
WP_100882750.1\|4834172_4836701_-\|tail	phage tail tape measure protein	A0A0U4JEA4	Pseudomonas_phage	0.0e+00	89.9
WP_003158969.1\|4837027_4837387_-	hypothetical protein	Q9MCA4	Pseudomonas_phage	1.2e-59	100.0
WP_034076445.1\|4837396_4837918_-\|tail	phage major tail protein	A0A0U4ISC1	Pseudomonas_phage	2.6e-95	99.4
WP_003158971.1\|4837992_4838358_-	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	9.9e-65	100.0
WP_100882751.1\|4838360_4838855_-	HK97 gp10 family phage protein	Q9MCA7	Pseudomonas_phage	2.6e-76	98.6
WP_100882975.1\|4838847_4839405_-	methyltransferase domain-containing protein	A0A0U4IIB3	Pseudomonas_phage	1.0e-108	97.8
WP_003140663.1\|4839415_4840243_-	hypothetical protein	D4FUL8	Pseudomonas_phage	1.2e-147	87.3
WP_003140666.1\|4840246_4840606_-	hypothetical protein	A0A2H4J3Y5	uncultured_Caudovirales_phage	1.0e-42	70.0
WP_023081903.1\|4840667_4841390_-	hypothetical protein	A0A0S2SYC0	Pseudomonas_phage	8.9e-134	100.0
WP_033969598.1\|4841594_4841951_-\|head	phage head closure protein	Q9XJT0	Pseudomonas_phage	1.2e-59	94.1
WP_012614021.1\|4841951_4842272_-\|head,tail	phage gp6-like head-tail connector protein	A0A0U4JX27	Pseudomonas_phage	1.8e-54	100.0
WP_012614020.1\|4842252_4842849_-	hypothetical protein	H2BDB2	Pseudomonas_virus	2.8e-109	92.4
WP_033979590.1\|4843015_4844203_-\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	8.4e-214	99.0
WP_033955147.1\|4844199_4845090_-\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	1.7e-166	100.0
WP_033979592.1\|4845221_4846484_-\|portal	phage portal protein	Q9XJT5	Pseudomonas_phage	1.4e-235	97.1
WP_033979594.1\|4846637_4848329_-\|terminase	terminase large subunit	A0A0U4B0C7	Pseudomonas_phage	0.0e+00	98.2
WP_012614015.1\|4848330_4848711_-	hypothetical protein	A0A0U4JIP6	Pseudomonas_phage	1.2e-65	99.2
WP_058200136.1\|4848923_4849238_-	HNH endonuclease	H2BDK0	Pseudomonas_virus	1.8e-54	97.1
WP_033942785.1\|4849487_4849739_-	hypothetical protein	Q9MC38	Pseudomonas_phage	3.1e-41	98.8
WP_100882753.1\|4849738_4849957_-	hypothetical protein	H2BDJ7	Pseudomonas_virus	1.2e-25	87.9
WP_003101053.1\|4850307_4850592_-\|holin	phage holin family protein	A0A0U4J8T9	Pseudomonas_phage	5.0e-48	100.0
WP_003158986.1\|4850584_4850953_-	hypothetical protein	A0A0S2SYH4	Pseudomonas_phage	1.3e-59	97.5
WP_058181479.1\|4851254_4851452_-	hypothetical protein	NA	NA	NA	NA
WP_100882756.1\|4852591_4853170_-	hypothetical protein	Q9MC44	Pseudomonas_phage	2.7e-101	96.4
WP_100882757.1\|4853237_4853819_-	hypothetical protein	A0A125RNK9	Pseudomonas_phage	2.3e-95	87.2
WP_079386495.1\|4853815_4854082_-	hypothetical protein	H2BDI6	Pseudomonas_virus	2.4e-36	84.1
WP_100882758.1\|4854177_4854480_-	hypothetical protein	A0A2R3UAJ1	Myoviridae_environmental_samples	1.8e-19	47.8
WP_100882759.1\|4854476_4854893_-	hypothetical protein	A0A0S2SYC1	Pseudomonas_phage	4.1e-75	97.1
WP_100882760.1\|4854885_4855122_-	hypothetical protein	NA	NA	NA	NA
WP_003140689.1\|4855121_4855319_-	hypothetical protein	A0A0U4JX40	Pseudomonas_phage	5.4e-33	100.0
WP_100882761.1\|4855318_4855522_-	conjugal transfer protein TraR	A0A0S2SYW7	Pseudomonas_phage	1.5e-30	97.0
WP_100882762.1\|4855514_4855916_-	hypothetical protein	NA	NA	NA	NA
WP_100882763.1\|4856031_4857861_-	AAA family ATPase	A0A0U4B0G9	Pseudomonas_phage	0.0e+00	92.4
WP_049228436.1\|4857857_4858730_-	YdaU family protein	A0A2I7RGZ2	Vibrio_phage	6.3e-41	74.1
WP_100882764.1\|4858729_4858915_-	hypothetical protein	A0A0U4IIX2	Pseudomonas_phage	2.7e-26	95.1
WP_100882765.1\|4859111_4859684_-	hypothetical protein	A0A0S2SYA8	Pseudomonas_phage	5.7e-99	98.9
WP_023108940.1\|4859719_4859920_-	hypothetical protein	A0A0U4K5A6	Pseudomonas_phage	1.4e-28	100.0
WP_015648588.1\|4860028_4860808_+	hypothetical protein	A0A0U4JEE2	Pseudomonas_phage	7.6e-139	100.0
WP_033942807.1\|4860837_4861488_+	hypothetical protein	A0A0U4J8W4	Pseudomonas_phage	3.4e-124	100.0
WP_023102151.1\|4861643_4862162_+	hypothetical protein	NA	NA	NA	NA
WP_023120647.1\|4862158_4862914_+	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_157814489.1\|4863603_4863765_+	hypothetical protein	A0A0S3UG60	Pseudomonas_phage	1.3e-24	100.0
WP_033942813.1\|4863807_4864026_+	hypothetical protein	NA	NA	NA	NA
WP_100882767.1\|4864612_4865101_+	DUF1566 domain-containing protein	H2BDH2	Pseudomonas_virus	1.1e-74	88.3
WP_100882976.1\|4865296_4865803_+	DUF1566 domain-containing protein	A0A0A0YR68	Pseudomonas_phage	8.4e-30	49.3
WP_023875446.1\|4865840_4866197_+	four helix bundle protein	NA	NA	NA	NA
WP_100882768.1\|4866469_4867609_+	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	6.5e-46	34.4
WP_077148986.1\|4867631_4867844_+	DUF551 domain-containing protein	W6MW45	Pseudomonas_phage	7.3e-36	97.0
WP_100882769.1\|4867860_4868133_+	hypothetical protein	NA	NA	NA	NA
WP_096306278.1\|4868167_4868581_+	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	1.3e-76	99.3
WP_023098762.1\|4869071_4869296_+	hypothetical protein	A0A0U4JX53	Pseudomonas_phage	3.7e-38	100.0
WP_100882770.1\|4869292_4869652_+	hypothetical protein	B5WZX0	Pseudomonas_phage	5.7e-57	86.8
WP_157814490.1\|4869648_4870185_+	hypothetical protein	A0A2H4J611	uncultured_Caudovirales_phage	2.4e-19	33.7
WP_100882773.1\|4870500_4870716_+	hypothetical protein	H2BDF4	Pseudomonas_virus	2.3e-13	59.0
WP_100882774.1\|4871022_4872087_+	hypothetical protein	B5WZW5	Pseudomonas_phage	4.6e-86	97.5
WP_079864584.1\|4872227_4872848_+	ERF family protein	Q9MC70	Pseudomonas_phage	2.3e-106	100.0
WP_003097967.1\|4872851_4873478_+	exonuclease	A0A125RNR2	Pseudomonas_phage	6.4e-120	100.0
WP_100882775.1\|4873474_4873810_+	LytTR family transcriptional regulator	H2BDF6	Pseudomonas_virus	1.9e-54	96.4
WP_100882777.1\|4875601_4875880_+	hypothetical protein	W6MVL9	Pseudomonas_phage	2.7e-30	65.1
WP_100882778.1\|4875872_4876253_+	hypothetical protein	A0A0U4K5D6	Pseudomonas_phage	4.6e-57	94.4
WP_100882779.1\|4876249_4876663_+	hypothetical protein	A0A218M341	Acidovorax_phage	2.6e-05	62.9
WP_157814491.1\|4876836_4877418_+	hypothetical protein	NA	NA	NA	NA
WP_100882780.1\|4877572_4877845_+	hypothetical protein	A0A127KNQ8	Pseudomonas_phage	1.7e-29	73.6
WP_100882781.1\|4877841_4878108_+	hypothetical protein	NA	NA	NA	NA
WP_100882782.1\|4878100_4878922_+	ead/Ea22-like family protein	Q9MC82	Pseudomonas_phage	1.4e-53	52.7
WP_100882977.1\|4879089_4879296_+	hypothetical protein	B5WZV2	Pseudomonas_phage	4.8e-24	96.6
WP_100882783.1\|4879546_4880764_+\|integrase	site-specific integrase	A0A0U4B0G7	Pseudomonas_phage	9.5e-229	99.0
4884513:4884532	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP025053.1|WP_100882745.1|3439222_3439525_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP025053.1|WP_157814488.1|3439524_3439701_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP025053.1|WP_100882745.1|3439222_3439525_+|hypothetical-protein

3439222_3439525_+

100 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|90	0.87	1	1.0

3438565-3493980

NZ_CP025053.1|WP_157814488.1|3439524_3439701_+|hypothetical-protein

3439524_3439701_+

58 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|91	0.9464285714285714	0.9827586206896551	0.9824561403508771

3438565-3493980

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP025054

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

2. NZ_CP025053

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information