CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP023398	Pseudoalteromonas spongiae strain SAO4-4 chromosome 1, complete sequence	1 crisprs	DEDDh,cas3,DinG,cas6f,cas7f,cas5f,csa3,WYL	0	0	2
NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	1 crisprs	Cas14u_CAS-V	0	7	0
NZ_CP023399	Pseudoalteromonas spongiae strain SAO4-4 chromosome 2, complete sequence	2 crisprs	WYL,DEDDh,cas3,DinG,RT	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023398_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023398_1

2090872-2090954

Unclear

Consensus_repeat	Method
CAGCTACCTATGCGGCAGGTCAC	CRISPRCasFinder

1 spacers

cas6f,cas7f,cas5f

The CRISPR arrays of NZ_CP023398_1

>merge|NZ_CP023398|1|2090872-2090954|CRISPRCasFinder
CAGCTACCTATGCGGCAGGTCACATAATCATTGTGTAGAATTAATAAAAAAGAAAATTTACAGCTGCCTATGCGGCAGGTCAC

>NZ_CP023398|1|1|2090872-2090954|CRISPRCasFinder
CAGCTACCTATGCGGCAGGTCAC	ATAATCATTGTGTAGAATTAATAAAAAAGAAAATTTA
CAGCTGCCTATGCGGCAGGTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023398.1\|WP_157813494.1\|2089769_2090510_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023398.1\|WP_100913716.1\|2086193_2087114_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NZ_CP023398.1\|WP_100913723.1\|2095957_2096263_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP023398.1\|WP_100913728.1\|2104105_2105338_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239807
NZ_CP023398.1\|WP_100913711.1\|2076992_2077874_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP023398.1\|WP_100913712.1\|2078063_2079026_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NZ_CP023398.1\|WP_100913722.1\|2094742_2095918_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_CP023398.1\|WP_100913725.1\|2101903_2102947_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP023398.1\|WP_100913720.1\|2091665_2092688_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09737_cas7f_CAS-I-F	gnl\|CDD\|187868
NZ_CP023398.1\|WP_100913715.1\|2084831_2086100_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270306
NZ_CP023398.1\|WP_100913724.1\|2096843_2097170_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023398.1\|WP_100913717.1\|2087125_2089204_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP023398.1\|WP_100913719.1\|2091075_2091669_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_CP023398.1\|WP_100913725.1\|2098679_2099723_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP023398.1\|WP_100913710.1\|2076609_2076900_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	unknown
NZ_CP023398.1\|WP_100913713.1\|2079106_2082547_-\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP023398.1\|WP_100913714.1\|2082563_2084822_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP023398.1\|WP_100913721.1\|2092687_2094739_-\|hypothetical-protein	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867
NZ_CP023398.1\|WP_100913726.1\|2099929_2101417_+\|ATP-binding-protein	unknown	unknown	unknown
NZ_CP023398.1\|WP_100913709.1\|2076112_2076496_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023398.1\|WP_100913712.1\|2078063_2079026_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	3.78777e-80
NZ_CP023398.1\|WP_100913716.1\|2086193_2087114_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	2.18606e-80
NZ_CP023398.1\|WP_100913728.1\|2104105_2105338_-\|hypothetical-protein	gnl\|CDD\|239807	cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.	5.37787e-73
NZ_CP023398.1\|WP_100913711.1\|2076992_2077874_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.36915e-20
NZ_CP023398.1\|WP_100913722.1\|2094742_2095918_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	7.55864e-15
NZ_CP023398.1\|WP_100913725.1\|2101903_2102947_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.72253e-20
NZ_CP023398.1\|WP_100913715.1\|2084831_2086100_-\|extracellular-solute-binding-protein	gnl\|CDD\|270306	cd13588, PBP2_polyamine_1, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold. This group represents the periplasmic binding domain that functions as the primary high-affinity receptor of an uncharactertized ABC-type polyamine transport system. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.22772e-25
NZ_CP023398.1\|WP_100913717.1\|2087125_2089204_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	3.48407e-103
NZ_CP023398.1\|WP_100913719.1\|2091075_2091669_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.16653e-39
NZ_CP023398.1\|WP_100913725.1\|2098679_2099723_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.72253e-20
NZ_CP023398.1\|WP_100913720.1\|2091665_2092688_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|187868	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog.	9.84824e-107
NZ_CP023398.1\|WP_100913713.1\|2079106_2082547_-\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	5.78795e-73
NZ_CP023398.1\|WP_100913723.1\|2095957_2096263_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.30405e-10
NZ_CP023398.1\|WP_100913721.1\|2092687_2094739_-\|hypothetical-protein	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	1.1432e-24
NZ_CP023398.1\|WP_100913714.1\|2082563_2084822_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.30465e-90

>NZ_CP023398.1|WP_157813494.1|2089769_2090510_+|hypothetical-protein
MKKTSFSILALGILATGCTSDTDSDLLKTKAIQAEVLVSSNGERTKVNVELNSGNSFGSNVRLSNGDKIYAEVHNKRIQLEEDTDILDIDYEGRFSGSEESAEFKVELIRSSAQNASSTVELPLNFKILAPNSNSEIRYNQSVNVLLDGIDVGSKNEFTLNYICDNNNGGTTSGSASRHFENKSSLTLNLHTLKLLENVSLNSVKNCELDVIINRYKVGNISSEFADSSQIRAEQTRKIENITFKI
>NZ_CP023398.1|WP_100913717.1|2087125_2089204_-|EAL-domain-containing-protein
MDANCRIFIIDDEEINTLQLEHVLQECGEVLSCNDSSKALSLIDTFRPDVIVLDIEMPKVNGFDILKELRQKHYFNDLRIVVITSHSDIEIEEKALSLGAIDFISKPLNLTLCRMRIENHVNFKHQENMLQIAQSSLQSEKEHLRITLDSIADGVISTDDNARINYMNPVAQRLTGWSLIAAKGKHIEEVMSLNDATTGSRSLNPLVMALQENRPVAMAINTQLTSRQGITHRVEDSAAPILNSSDEQCGAVMVFQDVSETMAMAVQMTYLSHHDQLTALPNRVLLHDRLTQAITRAAFSENKLSLMLLDLDKFKYINDALGHHVGDEIIAHVGHSLDKFACNDITVARVGGDEFALVVPHTSTLSNIEPLIEQVLNVIGTPFRIADEQHVLSASVGISVYPDDAKSVEEMLRHADSAMYKAKHEASNSYCYFNDELQLAMNERLRIGNLLRKALDENTLEVYFQPKKDLATNEIVGYESLVRLIDEEGKCVSPLQFIDYAEETGLIYRLGAQVLEKSCIVAKKWLDAGCPKQVAVNISAKQFSDSSLVELVASTLEKTKLPSRYLELEITESALIDCYEQTVTQLKSISKMGISIALDDFGTGYSSLSYLRLFPLNVLKIDQSFVRDMLTDSQALDIVSTIVELAKTLNLKIVAEGIETTEQKQKLQSLGCKIGQGYLLGRPTPFEKNHKQ
>NZ_CP023398.1|WP_100913716.1|2086193_2087114_-|diguanylate-cyclase
MLLNIKPFSECKVLIVDDEELIRLSLSTLLETEFQVDSLGSGRAALAYCEDELPDLVLLDVNLPDMSGLEVCEKLKQQPAFRYIPVVFITSSTDESLQDKCWEVGASDFIFKPIVASTLVHRTKNHLTNKLHLEKLFEYSLKEPLTGLYNRYYLMEEVKNVLAQSKREKRSFSLLMIDIDEFKSYNDHFGHVKGDECLVIIANLIKEELKRPHDVAVRFGGDEFLVVLPYTDYHGIMKVCENLKEKLSDCLLPHPLSPHKTVTLSIGGVLFEKFCFLTLESMMSLADESLYNAKKAGKNCIEVAKI
>NZ_CP023398.1|WP_100913715.1|2084831_2086100_-|extracellular-solute-binding-protein
MESSFNRRKFLKTVGVGAALTSIGFKAPYVLAKKQVTLRVMGTHVTLQEELRQRAMRELGINLEFTPMGSAAVLQKAAADPSSFDLYEQWSDSINILWQADAIKPIDTDRLIYWDEINALTKEGKIVPDAKIGAGDSPNKLLFVQPDGTLGKQSSTKISFLPYVHNVDSFGYNTKFIDKGAPYKTESWAWLLDESNRGKVALVNAPTIGIFDVALAAEGAGLMKFNDIGNMSINEIDSLFSILLAKKREGHFAGFWTSVPQSVDFMKSNRVHIQSMFSPGVSACKGNGIPVIYASPKEGYRAWHGVMCMSKNVTGYVEEAAYKYMNWWLSGYPGAFIARQGYYISNPERSQPLMSIPEWDYWYNGKEATIELKGTDGKVSVHPGEIRDGGSYIKRFSNIAVWNTVMNNYDYSLDKWYELLNS
>NZ_CP023398.1|WP_100913714.1|2082563_2084822_-|response-regulator
MFNKIARSIASKISLALVVVFVILAISYFIMSQRLNSIEQSVESTAEISNYALEILRISKDIVELQRDINVYGVSGSASIFDKIKENFLSVETRLNSIATVKVHPSEQIYVDSMLELIVRYKSNLTTFHKRHEIRINLLEQALPDTYFNAVDLLNGLNAVAMTPTEKHYSLELMNKWHTLHHDALLYLNKKDYSKRKSVENIFKELNNLNQPFNNNSFNATLAEVKNILDQYAKIFRQSIQANRNYLTLVNVVMSGDSIEFSSLADKLRESSLQRLSKIKKQSEKSINETELILSFLSIGVVCYLVLLAVFIQSHVSFALKRLTNSFSSFLEGDFSAPISDLERQDEIGKLALAADQFRHLSNALNDAKLEAESVSKVKSEFLANMSHEIRTPMNGILGMARQLEHTPLTEQQSDMLNIIQSSGDSLLVIINDILDLSKIEASKVELENTPVDLTRLLNELEQLFVYQASDKGIQLFVSKSVDEEVLFYADKTRLKQILMNLLGNAIKFTEIGSVSLNVYVQNLNNELVLSFSVSDTGIGISDDNIKDLFDAFSQADTSITRRFGGTGLGLTISSKLLKLMDAPLQVKSELGKGTQFYFDFKTQLAKHTDRLESVTDDIVAESDLSHLSMLVVEDNEINQIVIEALLKEFNITDITIASDGAQAIEECKFNSFDIVLMDMQMPVMGGEEATKHIRKMTNYVDTPIIALTANVLKEDRQRCFDSGMDDFVSKPVSFENLKVVLSKWSNKANTN
>NZ_CP023398.1|WP_100913713.1|2079106_2082547_-|response-regulator
MKNKPLEQVVLSQKTLVFVVVLVVCFLSLAIYVFEAQITSNTLRELNSSVSENSQLLKTTLQSSVRRSKANLRFLHATPPISGLPRAHFNEGIDPFDGTTFEQWKNRLETIFVGFMQNNPNITQLRVVEVSASGKELIRVDKNGSQIAPVKHYQLQNKSSEPYFLPSSQLEVNQIYTSLISLNKEYNEVTFPYQPTMRFSIPIYSENGKRYAFLIMNIDASQLLNDLKDNTLNYADLVITGPDGDVLFHPNESYLFSKDLGTDTNWNTLYKQPVKYDSLQLAESNLLNIQPAYNYTQKVQIRNGQERGFLNLSIIVDKSYINTQINERRYVTYGVLVAVVIFSTILIMFFHRNSLRNKILAETRREAEAIVDGAIDAIIGFDLDGNVSSLNLAAESLCKTTKGMSIGRHYSEISSLKDLPIAKYISDVSDKTKILRDDYSNDANDGRNYFAITVSPLFSENSKVIGISLIIRDISNEKLAEEKIKRLNYDLEAKVRERTKELATAKDFAVKNNKFKNAFISNITHQLITPLNGIIGPLNILKREPFSNDSMKLIEMIESSASNLNLYINDILDLSKIEAGKLELNYKAVPLKTLIENLIESLSVKVFSKGLEIYLDTTELQCGVVKTDPIRLTQIIDNLISNAVKFTETGGIEIKASTVASDDKNYKLIIEISDTGIGIDYKKKKDIFNRFNNGQSFSDANEEGAGLGLSICKQLCQRMGGDINCVSTRNVGSTFSFFISVENQDETKTPYIACFESENILIISDIEKTKESLRHLLNFEGACVQDSSGHDIHSNINKNYDYVFFDKESFDLIESEQILEEVSKSVKSDNIIILNRPGSPLSKNLVDLYSVVHKPITQSKLKVLVDGEVYRESVIQPSSSIEVTETVSQTILDKLFGSKVLIVDDNDINIEVVKDALSTLPIEIYIANNGVGAIAQLKQSGLNDEPICCVLMDCQMPELNGYETCEKVRAGEAGKEFTDIPIIAMTANAMKGEKEKCLLVGMNDYISKPLSSVQVLQKTIEWSLSNFNNEAKVNTTQVSELWDRDSALKRLLNKEDLLFKICKMFSVKALGRFRELCDAIMQKDQELSRQLAHSLKGMCGEISANGLRELFSEIEIKASQGNFECTNELEEIEESLPKLVHTLQEL
>NZ_CP023398.1|WP_100913712.1|2078063_2079026_-|diguanylate-cyclase
MFSEVFNRNGVFVPINLKPLADSKILVVDDDLLMRKVLSTILKDICYVDVLSDSTQVINYCTSGVPPDLILLDVHMPNINGLEVCKQLRTLEAMNDVPIIFVTASVEVKSQNECWEAGGSDFISKPIAPSTLVHRVKAHLLNKARLEQLEKLTYKDSLTGLYNRHYLNEHSLAIVKQVQRQNESIALLMLDLDFFKRFNDLYGHQAGDDCLKDAAEAIVESLKRPQDVAVRYGGEEFLIILPYTDLTGLEHVAKNILSNIKKKNIKHAESPFEYVSFSIGGALSHTKSCEYSLEAMIKIADENLYEAKRLGKNQFVMLNN
>NZ_CP023398.1|WP_100913711.1|2076992_2077874_-|helix-turn-helix-transcriptional-regulator
MKTIFEHTQSNVLVIPQALYAMKDVTVLSHHRNSAIFYKNLEQDLANIEFYTNIPCFIYIENGREVITNSNKGKVELNAGSSIFLPQGLNLLSDFVKETESLKAYLVFFDDDVVNDYLSKVKKPLDGNVGEESFFLIDGGDEFTAFFDSIRLDIKAPTYLNIKLQELLHLIAWKDNQHILNSLLAKKIRVAPKRNLARILNTLDVFHLTVSDMAYLSGRSLSSFNRDFKESYKETPKKWLREKKLIKAKELLVSEELSVTEVAMTMGYENVSAFIKAFKLKYGVTPKQIKLRK
>NZ_CP023398.1|WP_100913710.1|2076609_2076900_-|antibiotic-biosynthesis-monooxygenase
MSVKVTLNCQVKTEQFQALLPFLESNLPNVRGFKGNIHVSVLFDEENNEMLLDEEWLTIEDHREYLSFIHENGVLKELSSFLSEPPIIKYFNKVEI
>NZ_CP023398.1|WP_100913709.1|2076112_2076496_-|hypothetical-protein
MNIWIFSAGIISLFTSFVHIFAGQVDPVRPFLKSDFPDLPKATLLGCWHMVSSILVLAGVTLVYIGWFGLDSFQNLVLGISICFIIFSVVFIMVGWHFFKLHTFSKLPQWMLLLPIGVLGLLGIIYI
>NZ_CP023398.1|WP_100913719.1|2091075_2091669_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MSRAYFTITYLPTNGDVTLLAGRCIGILHGFMNKRSCNHIGVSFPKWTDKHLGNQIAFVSEDKAALKNLRHQNYFEMMTHDKLFEISAIKPVPADATEVRIIRDQSLGKLFMGEKRRRMERANRRAEARGEEYIPQYVPNDSEISAFHKIPIVSKSNRNDFVLHLRLELANSIQNTFNSYGFATNEEYKGSVPLLAF
>NZ_CP023398.1|WP_100913720.1|2091665_2092688_-|type-I-F-CRISPR-associated-protein-Csy3
MKLPRQLTYIRSLSPGKAVFFYKTPESDFEPLQIERQKIRGQKSGFAEAYKNEVTPKELAPQDLAFGNPHTIELCYVPPTVQQLYCRFSLRVEANSLEPNVCGEPKVSYWLTRFMNTYKQHDGVGELAKRYSKNILMCEWLWRNKTSPNVDLEIIGEGFDPISISKANRLRWDGKWREAEDALHTLTEVIRTGLEDPYSFCFLEVTAKLDTYFGQEIYPSQSFAENDDVARTYAYTQVAGKDAACFHSQKVGAAIQMIDDWYNEDANKRLRIHEYGADYKNVIARRAPSNRLDFYSLLKKVALYVKEMEQNGLKNQEQTRHIHYIAAVLIKGGLFQRTKE
>NZ_CP023398.1|WP_100913721.1|2092687_2094739_-|hypothetical-protein
MELHTLLQNTPSKELIQTLRTAFAPYSEHVDITGSEPQALVILINLTYKRKDIKDLTSMSAAKAALRDEQHLKTCIDEVNWYHTHNLKYPDIRVSHQRLLAQVVDDGFRVVSSTSCPMQFGWSHNSAKINHAKLFLTGFLWRGEYMCLAQLLAKQEGFWVAQFRELGLLKKDVIAVCELIAAQLPNEELPEQISNYTPQLLIPIEHDYVSVSPVVSHAVLAALQMATRSGLLKRGIIEHNRPANVGELPSALGGRVNVLKYFAKTYSTTTVNDYYIKDEQRLFNVTALNNKTVSEALLVLSKSKPFNTLRQKRLARIAATKGLRTTFYGWLEKLIKLAQNEAINDSVPEPVKLLAMQEYKQVELVLSQELNRQMSGLKYLKRYAYHPDLMPILKAQLSYVLSHQNNQEGELEAEHIKYVHCQNLRVYNAEAMSNPYLMGMPSITALEGLGHQFQRKLQKLVGSGVHVIGVAVYIRSYQLHNNKQLPEPNKLKKDGQKREPQRSAIMQIPKCDICFDLVFRVQTNNQAVANDLSENLLKAAFPSRYAGGTLHPPSLYDQVDWCQVYAKPQALFERISSLPKGGSWLYPTSVEVSSFEELAEQLTLRPTMRPAALGYLALEEPKPRQGSITQLHCYVEPVIGLLECVDAVTVRLSGARHFLNHGFWAMHCKKASMLMKKAKFEYD
>NZ_CP023398.1|WP_100913722.1|2094742_2095918_-|TniQ-family-protein
MQFLSQTTPYPDESIESYLLRLSQENGYLGFADMADILWDWLVTQDHELEGAFPNELQSVDVYKVSQSSSFRVRALRLVAQLAGAEASELLNLCWLRSNTQFGANTAVSRGGLLVPRQLLRKSGIPVCAECLKQDAHIPYLWHLRVYKACHKHNQQLTRICGQCDAEIDYRASEAFLECECGAAIKPAAQANQADLKLANVHAGNAVAKLGGLLAWFSRWRAISYDDDEFSELFVSYFSNWPTGFEDELSNTAALAKVKQLRPFNHTPFNDVFGSLLKDSNLACAGSQGYNMVQLAIIAFLTKLVEQNPKKKHPNLGDLLLSMLDAAVILGTSTEQVFRLYEEGFLAAAQPPKKNTFLKPSNSVFYLRQVIELQQSFATNMSNNQQFVPPW
>NZ_CP023398.1|WP_100913723.1|2095957_2096263_-|helix-turn-helix-transcriptional-regulator
MESPTPLRLKQARKAAGYTQQRIGIALGMEPNTASARMNQYEKGKHSPDYTTMKRIADELGVPVAFFYCEEEVLAELILELGKLNKSELEQKLKDLKSSEK
>NZ_CP023398.1|WP_100913724.1|2096843_2097170_-|hypothetical-protein
MSNKILTPDGWVILKITTAKSTFYKVFASWQENDRWRLSSGSEAPPEISKCGKYWIWPQASGSCYHLLVNEENGYTYYTGNKLSEILACSNNKGGLIERVKLSSILNE
>NZ_CP023398.1|WP_100913725.1|2098679_2099723_-|IS110-family-transposase
MKFYTTFHKYYCGIDLHARILYVCILDERGNKLVHQKIKADRHELFKLISPYLEDIVVGVECMHCWYWVSDLCAEHDIDFVLGHALYMKAIHGGKAKNDKIDSYKIASLLRGGNFPLAYNYPAQMRSTRDLLRRRTRLVQHGAQLKAHIVNTNSQYNYPPLELHMKNKCVRQEFQTRFDDQAVQRNVNFDIAILDAYSEELKKLEYYLESNAKKHQPNYYAQLRTIPGVGLILAMTILYEIGDINRFESVQTFASYCRLVKCKAESAGKTYGTSGNKIGNGHLKWAFSEAAVLYLRGNDKARNYLNKLQKRMSKAKALSVLAHKLGRCVYFMLKNKTVFDDERFLKS
>NZ_CP023398.1|WP_100913726.1|2099929_2101417_+|ATP-binding-protein
MSLLTFKKLFGREAAEDEIPERLAEYFVESREFEDFDDVEESVLFVRGKKGTGKSAVLCFYAHKLEKENEFVLTGKGTELWHHFKPQENNPHSYVNEWQRVICTYVSMQLGKKIGIALTDDEMALVELSELEGIKRKNIVRSLLDRFKLKLGGVESSDFLPNSNHYTLKRYIEEGEQNIWLFIDDIDQTFLNDSDSRYRLAAFFTACRYLASSIPSLKIRAAVRDDVWWSIHREDEALDKVPQFIRTIKWDSNDTVRILAKRIEVFVSRFPKAAAFTTSKEMKKPFYAVFPYNYSWRKGQVPSRFIIHMFALGRPRWAIQLGRQCLETASRFSTVPDKIGIQLLLQTMPSYSGIKLDDLISEYDHECPQLREIIFSFYGGGSRWTTNALKAVIGSKVISSLKISIDDNSAPKPKQVVQFLYRIGFISAFVPALKAEDEEYFRFEEKPHLLSLELNEDDGFHWAIHQTFHSALNLSRDYKKNKEKPTKRPMSELPR
>NZ_CP023398.1|WP_100913725.1|2101903_2102947_-|IS110-family-transposase
MKFYTTFHKYYCGIDLHARILYVCILDERGNKLVHQKIKADRHELFKLISPYLEDIVVGVECMHCWYWVSDLCAEHDIDFVLGHALYMKAIHGGKAKNDKIDSYKIASLLRGGNFPLAYNYPAQMRSTRDLLRRRTRLVQHGAQLKAHIVNTNSQYNYPPLELHMKNKCVRQEFQTRFDDQAVQRNVNFDIAILDAYSEELKKLEYYLESNAKKHQPNYYAQLRTIPGVGLILAMTILYEIGDINRFESVQTFASYCRLVKCKAESAGKTYGTSGNKIGNGHLKWAFSEAAVLYLRGNDKARNYLNKLQKRMSKAKALSVLAHKLGRCVYFMLKNKTVFDDERFLKS
>NZ_CP023398.1|WP_100913728.1|2104105_2105338_-|hypothetical-protein
MKYKFTLLATLLLSTSTLIHAVELKNKENLIKTPPEVLNQDSIWGFNSENRELIDIYTSDGDKITVVNVGGLAHLGDMILGKVEDLQTYGLKIHKEEDDNNLKSDWIGTQAHTVYPSTGKLWRNGVVPYVFDSSLGPNAKRAVISAIQQWNTKTNLKFVPRTNEYDYISVSGGRSCSSWVGRVGGKQKVMLSELCGLHAALHELGHAVGFFHEHTRPDRDSYVQINYQNIVNGMQYNFQQKNISDSTGRGEYDYYSIMHYPANAFTKNGYNTITPLVPGVDTSYMGFGNYLSENDINAANILYSNYIPPTNVENYSGQLSGNGDSDIQINGNYFEFEGGNLRATLKGPSSANFNLYLYKWNSLIGNWALTSSSTNTSSNETIYGNVDQGYYYFLVYSLSGNGRYELDIEK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1809850 : 1833891

Vibrio_phage(25.0%)

tail,integrase,portal,head,terminase,capsid

attL 1804484:1804498|attR 1825028:1825042

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1804484:1804498	attL	NA	NA	NA	NA
WP_100913521.1\|1809850_1810564_+\|integrase	integrase	NA	NA	NA	NA
WP_100913522.1\|1810560_1810851_-	hypothetical protein	NA	NA	NA	NA
WP_100913523.1\|1810977_1811844_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_100913524.1\|1811864_1812128_+	hypothetical protein	NA	NA	NA	NA
WP_100913525.1\|1812139_1812664_+	hypothetical protein	NA	NA	NA	NA
WP_100913526.1\|1812690_1813167_+	class I SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	2.2e-64	69.6
WP_100913527.1\|1813179_1813455_+	hypothetical protein	NA	NA	NA	NA
WP_157813484.1\|1813467_1813641_+	hypothetical protein	NA	NA	NA	NA
WP_038640888.1\|1813651_1813876_+	hypothetical protein	A0A2C9CY14	Yersinia_phage	7.5e-23	68.9
WP_052140949.1\|1813943_1814300_+	hypothetical protein	A0A1P8DTU9	Salmonella_phage	1.7e-29	57.7
WP_100913528.1\|1814308_1814695_+	hypothetical protein	NA	NA	NA	NA
WP_100913529.1\|1814711_1815065_+	hypothetical protein	NA	NA	NA	NA
WP_100913530.1\|1815075_1815258_+	hypothetical protein	NA	NA	NA	NA
WP_100913531.1\|1815270_1815543_+	hypothetical protein	NA	NA	NA	NA
WP_100913532.1\|1815568_1815748_+	hypothetical protein	NA	NA	NA	NA
WP_157813485.1\|1815782_1815923_+	hypothetical protein	NA	NA	NA	NA
WP_100913533.1\|1815931_1816153_-	hypothetical protein	NA	NA	NA	NA
WP_100913534.1\|1816145_1817825_-	hypothetical protein	A0A2I7QS09	Vibrio_phage	3.9e-79	38.8
WP_100913535.1\|1817821_1818133_-	hypothetical protein	NA	NA	NA	NA
WP_100913536.1\|1818129_1819089_-	hypothetical protein	A0A2I7QRX1	Vibrio_phage	1.6e-21	30.8
WP_100913537.1\|1819088_1821212_-	hypothetical protein	A0A088C3W7	Shewanella_sp._phage	1.9e-83	30.0
WP_100913538.1\|1821211_1821571_-	hypothetical protein	NA	NA	NA	NA
WP_157813486.1\|1821567_1824870_-	tape measure protein	A0A2I7S9D9	Vibrio_phage	1.7e-41	36.4
WP_100913540.1\|1824930_1825695_-	hypothetical protein	NA	NA	NA	NA
1825028:1825042	attR	NA	NA	NA	NA
WP_100913541.1\|1825707_1826103_-	hypothetical protein	NA	NA	NA	NA
WP_100913542.1\|1826099_1826642_-	hypothetical protein	NA	NA	NA	NA
WP_100913543.1\|1826649_1826964_-	hypothetical protein	NA	NA	NA	NA
WP_100913544.1\|1827474_1828509_-\|capsid	major capsid protein E	K7P6G7	Enterobacteria_phage	1.0e-77	46.7
WP_100913545.1\|1828518_1828866_-\|head	head decoration protein	NA	NA	NA	NA
WP_100913546.1\|1828875_1830219_-	S49 family peptidase	A0A2D1GN02	Marinobacter_phage	7.8e-91	44.0
WP_100913547.1\|1830202_1831786_-\|portal	phage portal protein	A0A2D1GMV5	Marinobacter_phage	6.7e-166	58.9
WP_100913548.1\|1831782_1832001_-\|tail	phage tail protein	A0A2D1GN20	Marinobacter_phage	4.4e-12	59.7
WP_157813487.1\|1832001_1833891_-\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	9.5e-135	40.4

DBSCAN-SWA_2

2342137 : 2351658

Staphylococcus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010561687.1\|2342137_2342602_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.3e-33	51.3
WP_100913856.1\|2342714_2343824_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	M4QPK3	Synechococcus_phage	7.0e-37	37.5
WP_100913857.1\|2343848_2344508_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	1.5e-23	36.8
WP_100913858.1\|2344509_2345631_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	7.1e-53	36.7
WP_010561691.1\|2345635_2346085_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_010561692.1\|2346155_2347412_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.2e-98	53.9
WP_100913859.1\|2347611_2349840_-	patatin-like phospholipase domain-containing protein	A0A1C9C5D6	Heterosigma_akashiwo_virus	1.7e-05	25.2
WP_100913860.1\|2349984_2351658_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	4.6e-40	25.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP023400

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023400_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023400_1

22777-23224

Unclear

Consensus_repeat	Method
GTTCACAGACGAGTGTGTGGCCAGTAAG	PILER-CR
GTTCACAGACGAGTGTGTGGCCAGTAAG	CRISPRCasFinder
GTTCACAGACGAGTGTGTGGCCAGTAAG	CRT

7 spacers

Cas14u_CAS-V

The CRISPR arrays of NZ_CP023400_1

>merge|NZ_CP023400|1|22777-23224|PILER-CR,CRISPRCasFinder,CRT
GTTCACAGACGAGTGTGTGGCCAGTAAGTGCATGGTCGTTATGTGTTAGTCGTTGTGCATGTTCACAGACGAGTGTGTGGCCAGTAAGAAATAAAAGGCTGGATTGACCCAGCCGGTAAAGTTCACAGACGAGTGTGTGGCCAGTAAGAGATACCACTGTTATTCGCAGCCACTTTAAATGTTCACAGACGAGTGTGTGGCCAGTAAGAAGCAAACGAACTTCCAAAAGTACAAACCTTGGTTCACAGACGAGTGTGTGGCCAGTAAGCTGCGGGGCTTCTTACCTCTGGCTATTTGTGAGTTCACAGACGAGTGTGTGGCCAGTAAGACTCCGTGTTGAAGTGGTTATGCTATCACACAGTTCACAGACGAGTGTGTGGCCAGTAAGAGTGTCAGGATGCGTATGATATGCGACGTATTGTTCACAGACGAGTGTGTGAACAGTCTG

>NZ_CP023400|1|1|22777-23164|PILER-CR
GTTCACAGACGAGTGTGTGGCCAGTAAG	TGCATGGTCGTTATGTGTTAGTCGTTGTGCAT
GTTCACAGACGAGTGTGTGGCCAGTAAG	AAATAAAAGGCTGGATTGACCCAGCCGGTAAA
GTTCACAGACGAGTGTGTGGCCAGTAAG	AGATACCACTGTTATTCGCAGCCACTTTAAAT
GTTCACAGACGAGTGTGTGGCCAGTAAG	AAGCAAACGAACTTCCAAAAGTACAAACCTTG
GTTCACAGACGAGTGTGTGGCCAGTAAG	CTGCGGGGCTTCTTACCTCTGGCTATTTGTGA
GTTCACAGACGAGTGTGTGGCCAGTAAG	ACTCCGTGTTGAAGTGGTTATGCTATCACACA
GTTCACAGACGAGTGTGTGGCCAGTAAG

>NZ_CP023400|1|1|22777-23224|CRISPRCasFinder
GTTCACAGACGAGTGTGTGGCCAGTAAG	TGCATGGTCGTTATGTGTTAGTCGTTGTGCAT
GTTCACAGACGAGTGTGTGGCCAGTAAG	AAATAAAAGGCTGGATTGACCCAGCCGGTAAA
GTTCACAGACGAGTGTGTGGCCAGTAAG	AGATACCACTGTTATTCGCAGCCACTTTAAAT
GTTCACAGACGAGTGTGTGGCCAGTAAG	AAGCAAACGAACTTCCAAAAGTACAAACCTTG
GTTCACAGACGAGTGTGTGGCCAGTAAG	CTGCGGGGCTTCTTACCTCTGGCTATTTGTGA
GTTCACAGACGAGTGTGTGGCCAGTAAG	ACTCCGTGTTGAAGTGGTTATGCTATCACACA
GTTCACAGACGAGTGTGTGGCCAGTAAG	AGTGTCAGGATGCGTATGATATGCGACGTATT
GTTCACAGACGAGTGTGTGAACAGTCTG

>NZ_CP023400|1|1|22777-23224|CRT
GTTCACAGACGAGTGTGTGGCCAGTAAG	TGCATGGTCGTTATGTGTTAGTCGTTGTGCAT
GTTCACAGACGAGTGTGTGGCCAGTAAG	AAATAAAAGGCTGGATTGACCCAGCCGGTAAA
GTTCACAGACGAGTGTGTGGCCAGTAAG	AGATACCACTGTTATTCGCAGCCACTTTAAAT
GTTCACAGACGAGTGTGTGGCCAGTAAG	AAGCAAACGAACTTCCAAAAGTACAAACCTTG
GTTCACAGACGAGTGTGTGGCCAGTAAG	CTGCGGGGCTTCTTACCTCTGGCTATTTGTGA
GTTCACAGACGAGTGTGTGGCCAGTAAG	ACTCCGTGTTGAAGTGGTTATGCTATCACACA
GTTCACAGACGAGTGTGTGGCCAGTAAG	AGTGTCAGGATGCGTATGATATGCGACGTATT
GTTCACAGACGAGTGTGTGAACAGTCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023400.1\|WP_100915936.1\|26600_28004_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319756
NZ_CP023400.1\|WP_100915927.1\|18334_18625_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023400.1\|WP_100915921.1\|14442_15168_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239318
NZ_CP023400.1\|WP_100915926.1\|17953_18175_-\|DUF2375-domain-containing-protein	unknown	unknown	gnl\|CDD\|131968
NZ_CP023400.1\|WP_100915920.1\|11124_13737_-\|TraC-family-protein	unknown	unknown	gnl\|CDD\|274279
NZ_CP023400.1\|WP_100915935.1\|26188_26599_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023400.1\|WP_100915929.1\|19939_20557_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023400.1\|WP_100915931.1\|23282_24749_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	Cas14u_CAS-V	-	gnl\|CDD\|284650
NZ_CP023400.1\|WP_100915930.1\|20664_22308_+\|DUF4942-domain-containing-protein	unknown	unknown	gnl\|CDD\|372683
NZ_CP023400.1\|WP_100915923.1\|15901_17179_-\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|176454
NZ_CP023400.1\|WP_157813620.1\|13749_14439_-\|TraV-family-lipoprotein	unknown	unknown	gnl\|CDD\|370611
NZ_CP023400.1\|WP_100915928.1\|18687_19938_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226875
NZ_CP023400.1\|WP_100915938.1\|29133_29865_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377500
NZ_CP023400.1\|WP_157813621.1\|24755_25310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023400.1\|WP_157813622.1\|28013_29144_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368991
NZ_CP023400.1\|WP_100915933.1\|25315_25672_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023400.1\|WP_100915924.1\|17178_17598_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP023400.1\|WP_100915939.1\|29878_30175_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377786
NZ_CP023400.1\|WP_100915940.1\|30187_30541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023400.1\|WP_100915934.1\|25796_26114_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023400.1\|WP_100915936.1\|26600_28004_-\|hypothetical-protein	gnl\|CDD\|319756	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS). This family contains TraB (VirB10 homolog) and a component of the type IV secretion system (T4SS), and similar proteins. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TraB is localized similarly to related proteins in other systems, but unlike in other systems, Neisseria gonorrhoeae TraB does not require the presence of other T4SS components for proper localization. It has been shown to be expressed with TraK (VirB9 homolog) at low levels in wild-type cells, suggesting that gonococcal T4SS may be present in single copy per cell and the small amounts of these proteins are sufficient for DNA secretion.	1.2156e-96
NZ_CP023400.1\|WP_100915920.1\|11124_13737_-\|TraC-family-protein	gnl\|CDD\|274279	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.	7.05767e-136
NZ_CP023400.1\|WP_100915921.1\|14442_15168_-\|hypothetical-protein	gnl\|CDD\|239318	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.	3.66255e-24
NZ_CP023400.1\|WP_100915926.1\|17953_18175_-\|DUF2375-domain-containing-protein	gnl\|CDD\|131968	TIGR02922, protein_of_unknown_function_DUF2375, TIGR02922 family protein. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595. [Hypothetical proteins, Conserved].	7.17213e-11
NZ_CP023400.1\|WP_100915931.1\|23282_24749_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|284650	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain. This putative domain is found at the C-terminus of a large number of transposase proteins. This domain contains four conserved cysteines suggestive of a zinc binding domain. Given the need for transposases to bind DNA as well as the large number of DNA-binding zinc fingers we hypothesize this domain is DNA-binding.	3.42417e-17
NZ_CP023400.1\|WP_100915930.1\|20664_22308_+\|DUF4942-domain-containing-protein	gnl\|CDD\|372683	pfam13708, DUF4942, Domain of unknown function (DUF4942). The function of this family is not known.	1.02497e-18
NZ_CP023400.1\|WP_100915923.1\|15901_17179_-\|Y-family-DNA-polymerase	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	1.61354e-110
NZ_CP023400.1\|WP_157813620.1\|13749_14439_-\|TraV-family-lipoprotein	gnl\|CDD\|370611	pfam09676, TraV, Type IV conjugative transfer system lipoprotein (TraV). This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.	3.77067e-15
NZ_CP023400.1\|WP_100915928.1\|18687_19938_+\|hypothetical-protein	gnl\|CDD\|226875	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only].	5.32451e-07
NZ_CP023400.1\|WP_100915938.1\|29133_29865_-\|hypothetical-protein	gnl\|CDD\|377500	pfam05309, TraE, TraE protein. This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression. The exact function of the TraE protein is unknown.	8.11831e-17
NZ_CP023400.1\|WP_157813622.1\|28013_29144_-\|hypothetical-protein	gnl\|CDD\|368991	pfam06586, TraK, TraK protein. This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown.	1.07896e-05
NZ_CP023400.1\|WP_100915924.1\|17178_17598_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	7.28596e-25
NZ_CP023400.1\|WP_100915939.1\|29878_30175_-\|hypothetical-protein	gnl\|CDD\|377786	pfam07178, TraL, TraL protein. This family consists of several bacterial TraL proteins. TraL is a predicted peripheral membrane protein which is thought to be involved in bacterial sex pilus assembly. The exact function of this family is unclear.	2.60499e-05

>NZ_CP023400.1|WP_100915930.1|20664_22308_+|DUF4942-domain-containing-protein
MTNSKQLILDIAGSEHDFEFYPTTYEIISTIKSDIENESIKSKNPSVLDVGAGDGRVLNGLTLGKRYAIEKSSPLLNALSKDIFVVGTDFHQQTLIDKKVDVVFSNPPYKEYESFAAKIIKEANAKVVYLVIPTRWNNSNVINEALGVRRAKTEVIDSFDFLEADRAARAKVDVLRIMVGESSWGVISPKVDPFKLWFEENFAIDVNKEKVASSTNNLSKREQVSNELKNELVCGKDVVSTLESLYQRDLDKLITTYKSLELVDEEILKELNVNLEGLCEALAQRISGLKDLYWKELFSNLSKVTDRLASSSRKKMLDTLFEHTQIDFTKANAYAVLTWVCKNANEYYDSQLIELMEDMTAQANVLLYKSNERVFRDEDWRYTRRPNGLNKYSLEYRVVISNMGGIDTGYWGDKNEGIKERAKDFLNDICTIARNIGFDTTDCERVDSFNWVSGQKKLFTYRDHVSGLNLTLFEAKAFKNGNLHIKFNETFMAKLNVEFGRLKGWLKSADEATNEMNIDTELAISSFNTNLQLPMDGSSLLTFKTAA
>NZ_CP023400.1|WP_100915929.1|19939_20557_-|hypothetical-protein
MKKITLWFIGILFVACALGGISFYFYNAHIQQQNAAAEKKRAEDIKRYLEELRTYSGIHEECNSVFSTNKVANFAASKFNTDKIEISYPTTADRLKGDGFKTCIALVTEVVNDPTTSPQRQYAIYILNDQTFKVALVDEISKPLNVNNREIRIDRGKSVFDTAFESANDSIFESDSLNYEDSFYIIRNSTKYVSVGIEYEESPKN
>NZ_CP023400.1|WP_100915928.1|18687_19938_+|hypothetical-protein
MSVQLILARNNLGTLVHIDDVPSGLACECYCPDCGARLEARKGPVNRHHFSHDQRDAKFQNCSYGPETELHLALKRLLQQKMKAIIPTAYSSNKTVVINLDSSQLETCYPSSAYRCDVETVFRGEPIYFEIKVTHATGKDKLDFIKVNNFNVVEVSTPSDANINNETLEEIFQRSEFKWLSLDIFSAIGQSVFANEKSLQQSFIDENKRLEKIIEDQKWQIAGNDRRLSQQAPSIESVEKNEHDLTVKERGLRRQVARLMSQKREIQNQIQQKNDELDFLLQRGFEITEAEKQKTESNYLKSLAAKHSQTIEKNEKVMALLCEEIDALRSKKAELVVTVKSKQLEVSALDNKEEELIAYESKLQQLEEEIRRKTVAVNKAIRILKDLETNLKPTLSNIGTPWPISNSVYEEIVIEV
>NZ_CP023400.1|WP_100915927.1|18334_18625_+|hypothetical-protein
MKNNVVLITTSNSDLALYLNQDLICYFDSNFDGIAIKQVVEATAENLSNSLNVDLVKKPLHITKCDEDWVNGEDVNSLLSRIEKTTDSKCLIKFAS
>NZ_CP023400.1|WP_100915926.1|17953_18175_-|DUF2375-domain-containing-protein
MANSSKEYTVLFTRDCSIVVEHEVYFLEVKGSGRPIIPSSIKKNLSILAVIEGAPNIVNKLGDRELEIFRAVS
>NZ_CP023400.1|WP_100915924.1|17178_17598_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MLSPILPSTTKIELCEFKPAGGFPNPCEDYLSKPISLDELLINRPSSTFMFKVAGNSMFPTIPEDSMIVVDRSVEIQSGKIVLATVDGQFVVKELQRTNGKIIFHSHNSDYEDIEINSTEENLQDGVVWGVVTSVIKKL
>NZ_CP023400.1|WP_100915923.1|15901_17179_-|Y-family-DNA-polymerase
MLWVLCDINAAYVSFCQLFNPQFNLEEVPLGVLSSNQGNIVARNQPMKDLGVKMGEAAFKIKNDVYKNQGHLWGSNFEFFGDMSNRFHTELEYFLIEPERYSVDEAFGRIDTSYTKDVKAYAQKIQSTLKRNLGLGCGIGISHTRTLAKAASHCAKIKQWKHKTNGVVFLDTEEQINYALERMQTTDVWGVGRKIGAKLSESGIHNALQLKQACPIEMKSKFNVVLARTIQELNKIPSIDLKDPMMAREQICVSRSMGKPVTQFNELKESIATHMAIASKKARQQLMFVSQIKVFISTNPFSDTKQYSKSIGIDLPYPTSNTLDLTNYALYALKHLYKAGYEYKKSGVILSKLVLSNQIQTNLFEENSDDQVKLKQTEVMDSINDKFGKGAIRIASAGYSHNWKPKDDLAPPSYTTRLDELVVVN
>NZ_CP023400.1|WP_100915921.1|14442_15168_-|hypothetical-protein
MKKLSILAASLSVLLSSQIYAGQQLSQSEIKQSLSQKGDIEGIQELPVKELMLVKTKAGETYFISKNGRFVFQGTLIDTWFRKTIDDLSEARTAHRVPLEKMGVNKEDLAILTFGNQDIPKQASIFVDPNCGVCTALFKMVSQSPEKYHFDFILAPIFGERSKTAINKLHCAADENKAVMDLLHKTSLVTKMKPQCDTSKINNSLIVMNLLEGKGTPFFVRADGLTLNGIPNDLDKWLEVE
>NZ_CP023400.1|WP_157813620.1|13749_14439_-|TraV-family-lipoprotein
MKKQLSILALLSMTSGCSVFSVGEEEFQCTGKPKNSLCKGPMEVYELTNNQDHLEHLMNDSQDESESTTQKPVQFIKDPQNNITYIYEGRTLRRQTSEDYDEAKIVAIASDNDYSQSQHNDELEDLRTFNYVPQDIAPEPLAVLEEAQAMRIYVSAWEDKEGDLNIPGYVYVELKPRRWVAGHQADMRPSRVVPFQVIQKSKTTQKRKSQMSKGVDPLNINRTQIPKQQ
>NZ_CP023400.1|WP_100915920.1|11124_13737_-|TraC-family-protein
MNISKFMSNLFNGSNESHNETSGPLWNDLLNKQKGLIDGRRINELNPVLEYIEEEKLFIMDGGYIGFVIACQPTNGVNNQIRTAYQGLLSEKYPDDTLIQLSLAALPRIDNFLRGYMVKRNNRMPGSDSELSDAMSQKVVEYYSKARKESLDQRLGIKPRDFEHWVTFKFPIKEQLPNQKELDSFREIKRKTLSTFEDLGMAPMLLNDSEWLSRMQTVFNHSENSSWRDKVKVDRKGILGRQILEPGSMVVREEKGISFSSGFKDSNGFAAAISLKQTPENLGYGDLINLLGDWQYGKRTASWNPFIMTLNVQVPNQAKAKEEYATRFNWLKKQAKGKMLEVVHTLKDQYHDYKEVEQEIRNAELCNVSLSMIVLGENKEQTLDATDKLVQSFKRQQYKFNIESVLAPSMILNSLPLGLDTEFIKLSDRFEEWSSTGAAFLIPHSASWKGNTAFPVLEFVTRFGQIFGLDLFQTDGGFNALICAATGKGKSFVTNKIISSYLGSGVANGYANSPDGAQIFVIDKGKSYENLTHTYSNSQFIEFNEKMDFSLDPFAQINDFYGKDGQAAMVHALLKAMASESGDLSDYQSTEMLTILTELWDEKGQDASVTDFAKRCENHPEKDIHRIGRQLRPWCEGQVYGDFFGKRFKPVNFNARLIVCEMDELSSNPHLAQVVLMSIINAAQHAMFLSGPDRRKLFILDEAWEYLKDRAGSKVNYLAEFLETGWRRFRKTRAAGICITQSLLDAYQSQAGIAIVNNSPWKLMLAQEPETIDKLKEMKAYDGTEQDYTLMKSVHTRKGYYSELFVRYGEQKEIVKFFVDQKTQLVYSTDPDDRALIAKYKDQGYDINEAIDKAYEEKQKLKILAEGKVA
>NZ_CP023400.1|WP_100915931.1|23282_24749_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MTEKTQLTSVFKTYQFEIHNLSQSKRKKLLQTFKQSDMLYYKALAKCEEDAKQLLALETKKERKSALGIIQKKLQDIVKPLPFGSALKASIIETVKAQISSFVELTLSGQDATYPTKENQEVDYHYWLNVLLQSTDKATEDIARDELSKRDRGLYRPLTFEKYRTTDGFMVLSDDKGRLFAFLNLWSAKDKRASALALEMHDTRTGEAFKTKTSTGMLLPLSFSEFQRNALANGEAKTAKLVMRGERLFLMVSIKFEVPKRNPVYVMGIDRGIAELATYTVRDPETGKLIDSGTFSGSTLKRHQQEHEAKQKADQKIGRAFIRGWSNYTTNLMHHVANEVVKVADKYSCQVVIEDLSNIKNNPKMKRPKFARKNNFRRMLSRQQYGRLESMLSYKLQSVGLPEPALVWASYTSQTCPECGHSCKENRITRDAFQCQSCGFEQHADIVGALNIAGSYICFEKIKHKLKKGKPRTEEFRYQNWLVDNLEI
>NZ_CP023400.1|WP_157813621.1|24755_25310_-|hypothetical-protein
MARTVLNLSALLITTLLVHAIFQGDATPEYTAILILLSPIPLYVALQYIKLVIYTHMAKRSLIVELSKNNIHIRKIGHDIDVNVHSKFSNRCNLIVSHTDLLAGFKQAFHQINEITSEHWFHMRPIVIVRLPEKQLSRIELKYINDTAFEAGAFDVLQAKSAESESSIRRKLKNHINQMCVYGK
>NZ_CP023400.1|WP_100915933.1|25315_25672_-|hypothetical-protein
MRNIVLIFAGVAFLLWLSNFDNNAITENLQVYSTGLGRAVTLLVSLFISLSFYNSLCKYHDTKSTEEKPQNLLHHPVLRITLIHIALYVALMSITPTFTSWISDSGDSVANFIIKAKG
>NZ_CP023400.1|WP_100915934.1|25796_26114_-|hypothetical-protein
MKADNFVLVTAMQTSANNPKFNDFLGGIELLDTVFQQRINLALPVEEHTDDLQEALTYLRQHGNQVAALASKYQKLALSNQTPPMLQKAYVEIATKLFDLTKVNP
>NZ_CP023400.1|WP_100915935.1|26188_26599_-|hypothetical-protein
MKILREITKIVIAASIGFIVNMYYTDAQIERYSSDTVSYLSSIPKIEVVDIEAITKTMLEEETPPAKVAEYVELLVRVKEAKGVLVIDTKSVITTPTLSVAKVLSYDALKDEAAKHGIKPELDYESLLEDFNKQFE
>NZ_CP023400.1|WP_100915936.1|26600_28004_-|hypothetical-protein
MSFNLKEKWADPNFRKFVVVCLIGLFAIPLYHTMSNRKEFKPLEERIAERKAEDRVDDKGRVKGLFDTNEISNLDQDEFNEIYKESADALQVRERRIYQEKEKVLAMVEQLQKDLDAQSLELKNLKRQQEINAKAKAPRTPANRQQSNGQRKNTKRNSQPDNMTAYNNAIETVEQVDQRVFDRTPATFVTAKPQIEGKVIRTITQRSVRSIKKTGEIEEKSHDEFLITQKEQTPKEAVKQPKNTKDDGGLVDANEGTVYLPAGSFFSGVLLTGLDAPTQLAAKKSPMPVIIRVKKEAILPNHFTLDIRECHVIGQAIGDLSSERAHIRAQSITCVREDGRSVESAIQANAVSDYDGKLGIAGRLVSKNGNLLAGSMAAGFMSGISQAVAPRRSLSVNTEPGDQDLWQTVDYGSVAAAGVFQGASNAMDRLAEYYIELAEQIHPVIEISPGRSISFAVISGAKLKLGD
>NZ_CP023400.1|WP_157813622.1|28013_29144_-|hypothetical-protein
MKTKLIVLSLCCGLSTLATAEESSESPAKDFKLPTQLINPEPQPVSKQDVFDSAVFNSQFSANAAAMKTLPTDKEVRHIAKTTETGVLDESDFPGYVDNSPTVKSNTPYSFLEIVKSKYKPTQEFKDLEPGSNIAIPVAVGLTNPIITNFKMIAVRTHDEESVMELEDGRLYITINSLKPVALMLFEEGVPESMVNVTLVPMEAMPVIVNLDINLSKEMKYKGSKHRIDLKEQEAIAKAEQSEIQPNFKTDTARISRIKQILKPVGRGEIPRGFTLSHDVSLAMKTPCGMTIEQRVMQRIVGTKEVVDVVRVKNNTTRPYSMREQMCESRNVMAVAIYNKSLLQPGEATEVYILRDKSIGSSRTIKNNSRPRVVNM
>NZ_CP023400.1|WP_100915938.1|29133_29865_-|hypothetical-protein
MMFKDSQVGKSWSAAVASGNLQLVGNFCLSIGVVVLIMMLFFKEAEIIAVPEQQIFGELSVQGKKANRNYQQSWALSTAQLIGNITPENVDFVKSSLMNVLSPLLKFQIEPMLEKQSEVIRMRGIKQVFIAEDLIHEPSTDLITIWGQKLTFIDGTPKSDSKWSYEFKIEVRHGRPRITHIDQYPGTPRKRKQAMEARNQASPENLSSQPYYDSELEIAVLEAAQDLKEKEAKATNEGETNEN
>NZ_CP023400.1|WP_100915939.1|29878_30175_-|hypothetical-protein
MSNPNRYRAKRHINDPLLILFVFTKEQVIPLFLAVAIGMVIKKTFLLIVLASIYIYITQKLKSRFPKSYLRHKAWSKGLIITNPSKSIVDPIQKTYFR
>NZ_CP023400.1|WP_100915940.1|30187_30541_-|hypothetical-protein
MTTLAKKSAGHTQLSNKQKQAATFALMFISLGAIAAAPTAGDFLYGIYAEVIGWLTGAPGIIISLFTFGVAAFQGIMKQNYINAGGAFIIAMMFANAQDAIEYFLTAGLPVASGLPI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023400_1	1.1\|22805\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	22805-22836	32	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	22805-22836	0	1.0
NZ_CP023400_1	1.2\|22865\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	22865-22896	32	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	22865-22896	0	1.0
NZ_CP023400_1	1.3\|22925\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	22925-22956	32	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	22925-22956	0	1.0
NZ_CP023400_1	1.4\|22985\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	22985-23016	32	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	22985-23016	0	1.0
NZ_CP023400_1	1.5\|23045\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	23045-23076	32	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	23045-23076	0	1.0
NZ_CP023400_1	1.6\|23105\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	23105-23136	32	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	23105-23136	0	1.0
NZ_CP023400_1	1.7\|23165\|32\|NZ_CP023400\|CRISPRCasFinder,CRT	23165-23196	32	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	23165-23196	0	1.0
NZ_CP023400_1	1.6\|23105\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	23105-23136	32	KC821610	Cellulophaga phage phi3ST:2, complete genome	8025-8056	6	0.812
NZ_CP023400_1	1.6\|23105\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	23105-23136	32	KC821634	Cellulophaga phage phi47:1, complete genome	8025-8056	6	0.812
NZ_CP023400_1	1.6\|23105\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	23105-23136	32	KC821629	Cellulophaga phage phi38:2, complete genome	8025-8056	6	0.812
NZ_CP023400_1	1.6\|23105\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	23105-23136	32	NC_020860	Cellulophaga phage phiSM genomic sequence	8080-8111	6	0.812
NZ_CP023400_1	1.6\|23105\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	23105-23136	32	KC821630	Cellulophaga phage phi3:1, complete genome	8025-8056	6	0.812
NZ_CP023400_1	1.6\|23105\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	23105-23136	32	KC821616	Cellulophaga phage phiSM, complete genome	8025-8056	6	0.812
NZ_CP023400_1	1.6\|23105\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	23105-23136	32	HQ670749	Cellulophaga phage phi47:1, * SEQUENCING IN PROGRESS *, 6 unordered pieces	39998-40029	6	0.812
NZ_CP023400_1	1.2\|22865\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	22865-22896	32	NZ_CP024012	Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence	33118-33149	8	0.75
NZ_CP023400_1	1.2\|22865\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	22865-22896	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	286251-286282	9	0.719
NZ_CP023400_1	1.2\|22865\|32\|NZ_CP023400\|PILER-CR,CRISPRCasFinder,CRT	22865-22896	32	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	35565-35596	11	0.656

1. spacer 1.1|22805|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 0, identity: 1.0

tgcatggtcgttatgtgttagtcgttgtgcat	CRISPR spacer
tgcatggtcgttatgtgttagtcgttgtgcat	Protospacer
********************************

2. spacer 1.2|22865|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 0, identity: 1.0

aaataaaaggctggattgacccagccggtaaa	CRISPR spacer
aaataaaaggctggattgacccagccggtaaa	Protospacer
********************************

3. spacer 1.3|22925|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 0, identity: 1.0

agataccactgttattcgcagccactttaaat	CRISPR spacer
agataccactgttattcgcagccactttaaat	Protospacer
********************************

4. spacer 1.4|22985|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 0, identity: 1.0

aagcaaacgaacttccaaaagtacaaaccttg	CRISPR spacer
aagcaaacgaacttccaaaagtacaaaccttg	Protospacer
********************************

5. spacer 1.5|23045|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 0, identity: 1.0

ctgcggggcttcttacctctggctatttgtga	CRISPR spacer
ctgcggggcttcttacctctggctatttgtga	Protospacer
********************************

6. spacer 1.6|23105|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 0, identity: 1.0

actccgtgttgaagtggttatgctatcacaca	CRISPR spacer
actccgtgttgaagtggttatgctatcacaca	Protospacer
********************************

7. spacer 1.7|23165|32|NZ_CP023400|CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 0, identity: 1.0

agtgtcaggatgcgtatgatatgcgacgtatt	CRISPR spacer
agtgtcaggatgcgtatgatatgcgacgtatt	Protospacer
********************************

8. spacer 1.6|23105|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to KC821610 (Cellulophaga phage phi3ST:2, complete genome) position: , mismatch: 6, identity: 0.812

-actccgtgttgaagtggttatgctatcacaca	CRISPR spacer
tgctcc-tgttgaagctgttatgctatcaccaa	Protospacer
 .**** ********. *************  *

9. spacer 1.6|23105|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to KC821634 (Cellulophaga phage phi47:1, complete genome) position: , mismatch: 6, identity: 0.812

-actccgtgttgaagtggttatgctatcacaca	CRISPR spacer
tgctcc-tgttgaagctgttatgctatcaccaa	Protospacer
 .**** ********. *************  *

10. spacer 1.6|23105|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to KC821629 (Cellulophaga phage phi38:2, complete genome) position: , mismatch: 6, identity: 0.812

-actccgtgttgaagtggttatgctatcacaca	CRISPR spacer
tgctcc-tgttgaagctgttatgctatcaccaa	Protospacer
 .**** ********. *************  *

11. spacer 1.6|23105|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NC_020860 (Cellulophaga phage phiSM genomic sequence) position: , mismatch: 6, identity: 0.812

-actccgtgttgaagtggttatgctatcacaca	CRISPR spacer
tgctcc-tgttgaagctgttatgctatcaccaa	Protospacer
 .**** ********. *************  *

12. spacer 1.6|23105|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to KC821630 (Cellulophaga phage phi3:1, complete genome) position: , mismatch: 6, identity: 0.812

-actccgtgttgaagtggttatgctatcacaca	CRISPR spacer
tgctcc-tgttgaagctgttatgctatcaccaa	Protospacer
 .**** ********. *************  *

13. spacer 1.6|23105|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to KC821616 (Cellulophaga phage phiSM, complete genome) position: , mismatch: 6, identity: 0.812

-actccgtgttgaagtggttatgctatcacaca	CRISPR spacer
tgctcc-tgttgaagctgttatgctatcaccaa	Protospacer
 .**** ********. *************  *

14. spacer 1.6|23105|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to HQ670749 (Cellulophaga phage phi47:1, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces) position: , mismatch: 6, identity: 0.812

-actccgtgttgaagtggttatgctatcacaca	CRISPR spacer
tgctcc-tgttgaagctgttatgctatcaccaa	Protospacer
 .**** ********. *************  *

15. spacer 1.2|22865|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024012 (Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aaataaaaggctggattgacccagccggtaaa	CRISPR spacer
ataataaaggcgggatagacccagccggaatt	Protospacer
* *  ****** **** *********** *

16. spacer 1.2|22865|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 9, identity: 0.719

aaataaaaggctggattgacccagccggtaaa	CRISPR spacer
gagaaaaaggccggattgtcccagccgagatg	Protospacer
.*. *******.****** ********. * .

17. spacer 1.2|22865|32|NZ_CP023400|PILER-CR,CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 11, identity: 0.656

aaataaaaggctggattgacccagccggtaaa	CRISPR spacer
tcgtaaaaggccggattgccccagccctcgtc	Protospacer
  .********.****** *******  ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP023399

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023399_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023399_1

47255-47498

Orphan

Consensus_repeat	Method
TTTAGTTAGTAAAATTTTGATCTC	CRISPRCasFinder

4 spacers

DEDDh

The CRISPR arrays of NZ_CP023399_1

>merge|NZ_CP023399|1|47255-47498|CRISPRCasFinder
TTTAGTTAGTAAAATTTTGATCTCAAAGCCGACTTTTAACTAAAAATAGCGTTTAGTTAGTAAAATTATGATCTCTAAAAACACAAAAATGTCGTTTTATTGATTTTAGTTAGTAAAAAACTGATCTATTAAGGAATTTGATCATTAATTTACTAATCAGCTAGTAAAATAATGATCCCAAATGCGCCGCAACTTAGTAAAAATATGATCTCTAAAGTCAACAGTTAGTAAAATTTTGATCTCT

>NZ_CP023399|1|1|47255-47498|CRISPRCasFinder
TTTAGTTAGTAAAATTTTGATCTC	AAAGCCGACTTTTAACTAAAAATAGCG
TTTAGTTAGTAAAATTATGATCTC	TAAAAACACAAAAATGTCGTTTTATTGAT
TTTAGTTAGTAAAAAACTGATCTA	TTAAGGAATTTGATCATTAATTTACTA
ATCAGCTAGTAAAATAATGATCCC	AAATGCGCCGCAACTTAGTAAAAATATGATCTCTAAAGTC
AACAGTTAGTAAAATTTTGATCTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023399.1\|WP_100914618.1\|61169_61610_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375918
NZ_CP023399.1\|WP_100914608.1\|44111_44450_+\|DUF3718-domain-containing-protein	unknown	unknown	gnl\|CDD\|378871
NZ_CP023399.1\|WP_100914605.1\|38509_39232_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP023399.1\|WP_157813528.1\|46396_47041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023399.1\|WP_100914617.1\|59341_61159_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173789
NZ_CP023399.1\|WP_010558401.1\|52283_53006_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP023399.1\|WP_100914606.1\|39778_41008_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP023399.1\|WP_010558399.1\|54566_54800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023399.1\|WP_100914607.1\|41965_43177_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP023399.1\|WP_100914609.1\|44599_46279_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP023399.1\|WP_100914613.1\|53277_54102_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP023399.1\|WP_100914614.1\|54823_55423_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NZ_CP023399.1\|WP_100914612.1\|49821_51990_+\|malate-synthase-G	unknown	unknown	gnl\|CDD\|235097
NZ_CP023399.1\|WP_010558407.1\|43194_43896_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP023399.1\|WP_100914615.1\|55787_57686_-\|beta-ketoacyl-synthase	unknown	unknown	gnl\|CDD\|238424
NZ_CP023399.1\|WP_100914616.1\|57814_58801_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP023399.1\|WP_040642196.1\|41029_41656_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
NZ_CP023399.1\|WP_100914604.1\|36963_38445_+\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP023399.1\|WP_100914611.1\|47960_49568_-\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|180592
NZ_CP023399.1\|WP_100914603.1\|34650_36873_-\|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648

Protein	Function_ID	Function_description	E-value
NZ_CP023399.1\|WP_100914608.1\|44111_44450_+\|DUF3718-domain-containing-protein	gnl\|CDD\|378871	pfam12514, DUF3718, Protein of unknown function (DUF3718). This domain family is found in bacteria and viruses, and is approximately 70 amino acids in length. There is a single completely conserved residue C that may be functionally important.	7.28877e-15
NZ_CP023399.1\|WP_100914605.1\|38509_39232_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	3.77225e-09
NZ_CP023399.1\|WP_100914618.1\|61169_61610_+\|hypothetical-protein	gnl\|CDD\|375918	pfam18492, ORF_2_N, Open reading frame 2 N-terminal domain. This is the N-terminal domain found in ORF 2 (open reading frame 2), a protein encoded just downstream of asp (A. sobria serine protease). The ORF 2 N-terminal domain is essential for proper ASP folding. This domain is intrinsically disordered but forms some degree of secondary structure upon binding ASP.	2.57709e-10
NZ_CP023399.1\|WP_100914617.1\|59341_61159_+\|S8-family-serine-peptidase	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	5.12257e-94
NZ_CP023399.1\|WP_010558401.1\|52283_53006_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	6.3155e-129
NZ_CP023399.1\|WP_100914606.1\|39778_41008_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	0
NZ_CP023399.1\|WP_100914607.1\|41965_43177_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP023399.1\|WP_100914609.1\|44599_46279_+\|OmpA-family-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.24172e-71
NZ_CP023399.1\|WP_100914613.1\|53277_54102_-\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	0.000585371
NZ_CP023399.1\|WP_100914614.1\|54823_55423_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	9.32889e-49
NZ_CP023399.1\|WP_100914612.1\|49821_51990_+\|malate-synthase-G	gnl\|CDD\|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NZ_CP023399.1\|WP_040642196.1\|41029_41656_-\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	2.37156e-128
NZ_CP023399.1\|WP_100914615.1\|55787_57686_-\|beta-ketoacyl-synthase	gnl\|CDD\|238424	cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.	1.38365e-78
NZ_CP023399.1\|WP_100914616.1\|57814_58801_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	9.72577e-64
NZ_CP023399.1\|WP_010558407.1\|43194_43896_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	1.53179e-146
NZ_CP023399.1\|WP_100914604.1\|36963_38445_+\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	6.35189e-06
NZ_CP023399.1\|WP_100914611.1\|47960_49568_-\|isocitrate-lyase	gnl\|CDD\|180592	PRK06498, PRK06498, isocitrate lyase; Provisional.	0
NZ_CP023399.1\|WP_100914603.1\|34650_36873_-\|hypothetical-protein	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	3.5222e-55

>NZ_CP023399.1|WP_157813528.1|46396_47041_+|hypothetical-protein
MYNLLMDKASLSQVFLAFAPMEALKVKHNIDYALEALSLPSAELLAEMQVLGIDLPDKPSASKKVDLTTINSTVLSSHLTELFLDKHKLLKTFSDFSLSEQVELRAFLQSLMPMLHLPPQALVEKMQREGVLDVLMGESDKAKAVKDKIAALSQNKRDHKVDEVKERLAKLSNKPQQCADELKIARVKANLNKASVSDNAAIIADAKQKIVQLG
>NZ_CP023399.1|WP_100914609.1|44599_46279_+|OmpA-family-protein
MEQEKQQLIEQIISTAKREFDIDLAKEKLISEEEYRALVFTELLSLENAELSRLIEQFNASPSHQAHASQAEPISQPKQRNNGVIIAASVAVLALCAVGAWFGLSGDTTAQSGQVAAVPNKVISQKSAQMSKPTPVEKEPEAVYQSLFAIHGSNTIGEKLAPALLKAYFEEQGAKDIDWQQGRIATERTMQFEMDGEKLEIGLAAHGSSTAFKALNANMAQIGMSSRKIKTSEVEALKGQSGDLSKLGNEHIIALDGLAIIVNQNNPLKTITTETLSRIFSGEIDNWAEIGGDQAPIKVFARDDNSGTFDTFKSLVLKKYGRKLTKQAERFESSSELSEHVSRDDYAIGFIGLNYIRYSKALAIADSSDTKAIYPTRFTIATEDYPLARRLYLYTPTNSATQIKDFANFAISDRGQEIVQELGLISQSIRVEDVVASELAPDKYNQYAKLAKRLSLNFRFNYATRDLDNKGKRDLQRLVSFVEENPSRKLVLMGFSDSIGARDKNTMLSLSRAKSVEQELNARGINVYAVEGFGEDMPLANNDNEVGRERNRRVEVWVL
>NZ_CP023399.1|WP_100914608.1|44111_44450_+|DUF3718-domain-containing-protein
MKALATTAIAASLLMLPSAAIAFDKSTIESLLVQACKDVKSNKVLKLKTNLKTNHLTLPLISEKLMCNGESVYDFAMTHNADKTAKLLRTGSVSIHDVAYNSSDKIWVWLDD
>NZ_CP023399.1|WP_010558407.1|43194_43896_+|purine-nucleoside-phosphorylase
MSTPHINAQLNDFAETVLMPGDPLRAKHIAETFLEDAREVTSVRNILGYTGTYNGKPVSIMASGMGIPSMSIYARELIVSYGVKNLIRIGTCGGIGSDIKIRDVIFAQGASTDSNVNRARVQGYDFAAIANFDLLVNGVEAAKRLGIAAKVGNVFTTDTFYQASNDLYQKLDKLGVLAVDMETAGLYGVAAEYGANAMALFTVSDHVITGEATPSEERQNSFNEMVKIALESI
>NZ_CP023399.1|WP_100914607.1|41965_43177_+|phosphopentomutase
MARALILMADSLGIGAAPDAERFGDKGANTLAHLLAAYHGETGQKLALPNLSKLGLIDACEQASNTNCQVAERNAPIAAYGYAKEISSGKDTPSGHWEMAGVPVLFDWGYFHDKQNSFPDAFIAEFIKRANLPGILGNCHSSGTVILEALGEEHMQTGKPICYTSTDSVFQIACHEDTFGLERLYEICEIARELLDEYNIGRVIARPFLGDAADNFARTGNRRDYSVLPPAPTLLDKLAEDNGAVISIGKISDIYAHQGITEKHKAPGLENLMAKTAEVFKQAKDHSLTFVNLVDFDEKFGHRRDAIGYAKALKQLDDYLPEFLALLGKDDVLMITADHGCDPTWQGTDHTREYVPVLAYTPGMTPVNLGERETFADIGQTLATWFSLAPLEYGNGFKSQLGS
>NZ_CP023399.1|WP_040642196.1|41029_41656_-|uridine-kinase
MTRTIIAIAGASASGKSLFSQTIYNELLNELAPGAIAIIEEDAYYRDQSHLPFEHRTQTNYDHPDAFEHELLLEHLNQLKEGKPVDIPVYDYAKHTRSDQTRRIQPAKILIVEGILLLSDPKLCDEFNIKVFIDTPLDICLMRRMQRDLEERGRSLQSVIEQYQATVRPMFYQFIDPSKHNADVVVTRGGRNRVAIDILKSKIKQLLQ
>NZ_CP023399.1|WP_100914606.1|39778_41008_-|NupC/NupG-family-nucleoside-CNT-transporter
MTSLMSLVGIASLLALAFLCSTNRKKINLRTVGGAFALQVLIGAFVLYVPAGREVLNGISVGVANVISYANDGIRFLFGGLAGDEIDGIGFVFAIKVLPVIVFFSALVAVLYHLRVMDFVIKILGGGLQKLLGTSKPESLSATANIFVGQTEAPLVVKPFIATMTRSELFAVMVGGLATVAGSILAGYVSLGVELKYLIAASFMAAPGGFLMAKMMVPETETPKQDLNDLDHGEEKPINVIDAAAGGALNGMQLAMNVGAMLLAFVALIALSNGFVGWIGGWFDNPDLTIQQILGYAFAPIAWLLGIPWSEAQLAGSFIGQKLVVNEFVAYLDFMNYQAQLSEHTKAVVTFALCGFANLSSIAILLGGIGGMAPSRRKDIAQLGLRAVLAGSMANLMSAAIAGFFLSIA
>NZ_CP023399.1|WP_100914605.1|38509_39232_+|ABC-transporter-substrate-binding-protein
MLKKLLTASIITLSFSASAGAIRFGYNQQYSAPHVINNGKGTNVSGIVIDVSNAISQEAGFMAKQLPLPRKRIEQYLIDGKIDAQCHANPIWYNAPSIIWSEVLYSDADIIVSDQAIASLQALSSHKQFKLGTVLGYKYPNLTEYFEAGNLKRFNSTSSKDSLTRFTKGELDGFVASYSEANYLTRLRRFNVLEVNSYDLHCSFSPKLNAEKRQRLIDAAHKLRDNGEFKRVFAKYIKPE
>NZ_CP023399.1|WP_100914604.1|36963_38445_+|VCBS-repeat-containing-protein
MKIITALVVTLGFASTSSLANSKKNLFNEVAIETDLTLSHPVYPIDLLPNPGKELMLIGTHSGQQYIDIFAASEAQLYNRIKRVKVPDTMLGIDFTKWQDATQQVYLFSSNGIYQLALEGTELVVPVVDTQTYLKKSGAQHLSKMEFVYNINDDQKADFFTTDLNHSYVHISDETGYQMAKVDLPARLEIEGHSAEIEPPRFAFFDTNEDNISELIGFENGLLNLLPSVGSNPGQAIKLRDDIMVDDWWHTKDADGDSLDQSNLVYRKLERVVDVNHDGIFDLVVRYTRSSGALDRQNDYEIYLGAIEQGKFIFQNQTNSLIQDEGTLTDLHLLDIDNDKQLEALVSGFDIGVSQIIGALLSGSVSQDVHLFYQNEKGEFSPKNKITREVELSFSLSKGRSGSPVVLFADVNGDGKKDWVLSDEQKAFNVYLANNKHSFSRRASKYKTTLPMQGRRVVTSDLNLDGKDDLVMSYGRLDDKNMRKTIKILFATS
>NZ_CP023399.1|WP_100914603.1|34650_36873_-|hypothetical-protein
MIDKSNVATQNISYANVCRSDVMKELPEKYYLTHFIEFAEFIKSTSSHLLGDDETAFFAEFAKLPEDAQCILVRIVNRKSPFVRKDTLVYSEVADSGAAINLLRKVGFVSRISKHCFHDFIGQLNKQDLIDLSISLTIDKPAKSANKNKWLNFVSNALSNALSYDQVKKSPVLTSHIYFAKQDTFHYLLFLYFGHLSGRLNQFSMRDLGVMQTQSVQQQQANFSDKDEAKSAFYYANLFKAIKEANKSDIPLLQTLAEQLIASDKPIGFLATQKYHHSLYKLAIVLIEQESTLGETLLSQSQHPAAREKYIRLLYKSDRKAQCEALLLAILDDPDSETLLLFAEDFYAQKFNQKRTSVLTDMLKKSGEPIGIDEAYLGQVETGVKDRYIKQHRLCYFTENKLWRALFALTFWHELFQHPASQRANEFSYYPKVLKQDNFYDLLHTEIDHKLSEFTNSQQFCDYISATIDQYSGEPNGLFYWHNELKDVLTTFIQHAPFESIKHHLLAMSKTFKALCDGYPDLMYIEQGEVFFEEIKAPGDSLRRNQLVSIKQLINAGFNVSIQRTEWRFNSEQNYVVVDIETTGGKKDTHRITEIGMVRVEQGKITDSWQTLVNPERHIPKMITELTGISNEMVKDAPKFEQIAEKLDTFSRNAIFVAHNVNFDYGFIRQEFARLNKKYTRAKICTVQQARKYLPGFKSYSLGKLCCDLNIELKNHHRALDDAKAAAEILLRINHVRAEQ
>NZ_CP023399.1|WP_100914611.1|47960_49568_-|isocitrate-lyase
MAKQLTYQQEIDRIATLKEVGEKKWQNINPESAARMRLQNRFQNGLEIARYTADIMRKDMEAYDQDPSQYTQSLGCWHGFIGQQKMISIKKHFQNNTDRRYLYLSGWMVAALRSEFGPLPDQSMHEKTSVAALIEELYTFLRQADARELGGYFRELDAARKAGNSAEEETILAKINDHKTHVVPIIADIDAGFGNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGVDNGVIVARTDSLGAGLTKQIAVSNEPGDLGDQYNAFLDVEEIESTDIKNGDVILNRNGKLVRPKRLPSNLFQFRSGTGEERCVLDCITSLQNGADLLWIETEKPHVGQIGAMVNEIRKVVPNAKLVYNNSPSFNWTLNFRQQVFDIMVEEGKDVSQYNREQLMSVEYDNTELAALADEKIRTFQADAAREAGIFHHLITLPTYHTAALSTDNLAKEYFGEQGMLGYVKNVQRQEIRQGIACVKHQNMAGSDMGDDHKEYFSGDAALKAAGEDNTMNQFS
>NZ_CP023399.1|WP_100914612.1|49821_51990_+|malate-synthase-G
MTTRIHHAGLAVDPSLYAFINHQVIPGTGIDVEHFWQGFSKIVSEMTPINRALLVKRDDLQVQIDQYHQAHSNFEFDHYKQFLQQIGYLKPAPSDVTVVTESVEPEIATMAGPQLVVPVSNARFALNAANARWGSLYDALYGTDAISYDNGREAGRDYNPVRGNAVIDFGREFLDQALPLTYGSHKDASDYAIVDGKLIVTLNNVSQSALQSPEQLVGYNGTKQQPTELILKNNGLHIVIQFDENHQIGKQDSAHIKDIVLESALTTIMDCEDSVAAVDAEDKVGVYSNWLGLNKGDLSVEFEKGGKTLTRALNPDLTYTDLSGDEQQLKGRSLMLVRNVGHLMTNPAILDKNGDEVFEGIMDAVITSLIALHDLKGKSTRKNSRANSINIVKPKMHGPEEVAYANTLFCKVESLLNLPENTLKMGIMDEERRTSVNLAACIAEAKERVIFINTGFLDRTGDEIHTSMLAGPMLPKDAIKAQKWIGAYENNNVDVGLACGLSGKAQIGKGMWPMPDEMAQMLVQKTAHVQSGANTAWVPSPTAATLHAMHYHQQDVFSLQQEIKQRVAANVDDILCPPLHPEPKSMTSDAIQNELNNNAQGILGYMVRWVEQGVGCSKVPDINNVGLMEDRATLRISSQHMTNWLCHGVCSEKQVIDTLEAMAKVVDKQNEGDANYRNMSDNYAQSVAFQAALELVLSGTKQPNGYTEPVLHRRRLEFKAAS
>NZ_CP023399.1|WP_010558401.1|52283_53006_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRAFEVRKNAMAKTAAAKTKVNSKYGKEIYVAAKNGGAELDTNLSLKRLIEKAKKDQVPAHVIDKAIEKAKGGAGEDYQPARYEGFGPGNCMVIIDCLTDNPNRTIKDVRLAFTKTNSKIGGPGTAAHSFDHQAVFAFAGDNDEEVLEALMMADVDVTDVEVEDGIVSVFAPHTEFYNVKTALAEAFPDVKLDVEEITFVPQTSVDIEGDDIPLFQKFMDMLNDSDDVQNIYHNAIVQD
>NZ_CP023399.1|WP_100914613.1|53277_54102_-|autotransporter-domain-containing-protein
MLGITTGANAVEIKVGQSHSDLPLDQSGTLTSVTPSGTSFSLAHDFSESVRVSLDYINWEDTHFSRKANSLKIDSQSYAATLTYFIENFAISGNYTYWQSDYRESFLELPSSQHKTYAPSYGLSVGYGIFFDEWVIEPSLLVQYNEWRYRDIMIEQNEMALALRDALEDETLVVSGLLSASKIIEIRPDTYLLAGGVIRWNELFQGDGTKQTDKFVSFAGRKSYPHNTDDDYAELSVFVTYDITPEWMVELDSSIAFLPHDNVSSVSWRIGYRF
>NZ_CP023399.1|WP_010558399.1|54566_54800_+|hypothetical-protein
MDFYILKKGDELKAIPADKAICKSYEKSGYSYIDKVAACTEQAAINKLKGKTFETLKGPLLRLSVVIFALILLWWVS
>NZ_CP023399.1|WP_100914614.1|54823_55423_-|lytic-transglycosylase-domain-containing-protein
MLFFAFSAAAKPIYQYVKSDGSIAFTDRKPIKHSYSIYRTGCYACQLRSSLNWHKIPIYPDKYHLEIATASKQHNVDPALVRAMIHAESAFKANARSKKGAIGLMQLMPATAKYMGIKRPTQPSQNILGGVKYLSYLLEKFNGNIRLATAAYNAGPNAVKKYRGIPPFAETKAYVERVGILHNRYRVAINKKKRKISPS
>NZ_CP023399.1|WP_100914615.1|55787_57686_-|beta-ketoacyl-synthase
MTALPIVVGMGGINAAGRTSAHQGFRRIVIDKLTQEARQETFLGLATLMNLVRQENGELVDHENQAICASEIEAKFGEQIIAGTLIRKIENNHFDVDATHGHQKMTVMPSEGDSIVFETSARHLPSPQPRDWQIENLEGGKVKVTINGELSLKHDTYRDNPIKAAGQFPTGFDPSTLYNSRYQPRGLQATIFAATDAIKSTGLAWQDVLAVVDPDQIGTYSASVAGQMQDEAFGGMMKNRLRGDRVSTKNLALGLNTMSTDFINAYVTGNVGTTFTTSGACATFLYNLRAAVHDIKAGRTRVAIVGSVDCAITPEIVEGFGNMSALANIEGLKKLDNSDTPDLRRTSRPFGENCGFTIGEGAQFAVLMDDALALELGADVMGSVPDVFVNADGIKKSITAPGPGNYITMAKSVALATSILGEEAVQKRSYILAHGSSTPQNRVTESIIYDRVAKAFNIDNWKLAAPKAFVGHTIGPASGDQMAMALGIFSHNIMPGITTIDKVADDVYAERLDIRTEHYECEAQDIAFINSKGFGGNNATAPMFSANITLEMLTKRHGESAMASYRDKLTQTKQNQADYSAAANLGDYQLIYRFGDGLIDENDIELTQETLSLPGFTHSVKLTASNPFDDMV
>NZ_CP023399.1|WP_100914616.1|57814_58801_+|helix-turn-helix-domain-containing-protein
MTTKVRLLLYPQILATSVTLPVEMLKAGEASFHDRKNRTLDIKFVADKQELIQCRAGCAFLPELTVGCDDNADFIIVPGIWRNPRPVIKQNQAAIGYLKAQWQQGATIVGVGTGNCLLAEAGLLDHHAATTHWHYAKQFRKDYPKVDLKPEFFITQSERIFCAASLNSLADIMVYLIAQLFGRDAAQNVERNFSHEIRKPYEEQRYLEGAVDRHADELIAQIQFWLKNNASSELSMQHVAEQFGISQRTLSRRFKAATGTTANHYLQKMRLEMAQELLASTNLTVQDVAVAVGYVDQGYLTKVFKRELKQTPSDYRLLVRKKLFKTDS
>NZ_CP023399.1|WP_100914617.1|59341_61159_+|S8-family-serine-peptidase
MKIKIKPSLLAASVILACTPAIAKITDSTFPLQNGDPLVAEQWHLQNIGQTGFSQSAGTSGNDLDIDFTHLMGIKGRGITVSVIDSGVEIDHPDLRANVVAGSLNLGDGSDYPQDNNGHGTSVAGLIAATEANGLGGRGVAPHANIVGFNYLPNQTVGNWLVSHGLSEDFRQLDRFTDPRVFNQSYGSTPATPVVHNYVLNPWQELQDDVYRYITEQSHWGRGSVYVKSAGNSFGTYNAYYQGVPILVLPYENNQFFNNQGLPFHNANIAPDNNNHWNLVVSALDAHGKLTSYSSVGSNVFVAAPGGEFGEAAPAMVTIDLQGCEAGSNVAGEHGNALHGGSELDPNCDYTGTMNGTSSAAPNTSGAIANIMSANHALDARAIRHILAQTARKTDENHPGVDLTFENADGELVTYNAIPSWQRNAAGYNFHQFYGFGAVDVDDAVYKALFTPVTPLPEQVITPWQTQIADAEIPDASLTGATSTLAFEQDVTVEAVQVKLNIDHTRLRDLAIELISPSGTRSVLMSARTGWLGSTEGGYTDTLMLSNHFYGEAAQGEWQLKVIDTDKGSSFTVGYNASIGLVGFNRNNNVENGVLKDWSLRVIGH
>NZ_CP023399.1|WP_100914618.1|61169_61610_+|hypothetical-protein
MKKLFIIAALTLSTQAAIANSAEQFKGLTITPVEQLTLAQSEVIVNDKTFKTNGTKTVVPGLDVFDVSGLNAYTVTGEIIVKLSGDVDFEQFNKDNDLIIKQAFKSYYILKSQSQRDLLPLVDALKKLEGVSSVTLELVDKGVIEK

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Crispr_ID: NZ_CP023399_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023399_2

47608-47674

Orphan

Consensus_repeat	Method
TTTAGTTAGTAAAATTTTGATCTC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP023399_2

>merge|NZ_CP023399|2|47608-47674|CRISPRCasFinder
AATCGCTAGTAAAATCTCGATCTGTTTTTTTAGCGGTAATCTTGATACTTAGTAAAAATATGATCTC

>NZ_CP023399|2|2|47608-47674|CRISPRCasFinder
AATCGCTAGTAAAATCTCGATCTG	TTTTTTTAGCGGTAATCTT
GATACTTAGTAAAAATATGATCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023399.1\|WP_100914618.1\|61169_61610_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375918
NZ_CP023399.1\|WP_100914608.1\|44111_44450_+\|DUF3718-domain-containing-protein	unknown	unknown	gnl\|CDD\|378871
NZ_CP023399.1\|WP_100914605.1\|38509_39232_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP023399.1\|WP_157813528.1\|46396_47041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023399.1\|WP_100914617.1\|59341_61159_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173789
NZ_CP023399.1\|WP_010558401.1\|52283_53006_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP023399.1\|WP_100914606.1\|39778_41008_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP023399.1\|WP_010558399.1\|54566_54800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023399.1\|WP_100914607.1\|41965_43177_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP023399.1\|WP_100914609.1\|44599_46279_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP023399.1\|WP_100914613.1\|53277_54102_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP023399.1\|WP_100914614.1\|54823_55423_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NZ_CP023399.1\|WP_100914612.1\|49821_51990_+\|malate-synthase-G	unknown	unknown	gnl\|CDD\|235097
NZ_CP023399.1\|WP_010558407.1\|43194_43896_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP023399.1\|WP_100914615.1\|55787_57686_-\|beta-ketoacyl-synthase	unknown	unknown	gnl\|CDD\|238424
NZ_CP023399.1\|WP_100914616.1\|57814_58801_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP023399.1\|WP_040642196.1\|41029_41656_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
NZ_CP023399.1\|WP_100914604.1\|36963_38445_+\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP023399.1\|WP_100914611.1\|47960_49568_-\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|180592
NZ_CP023399.1\|WP_100914603.1\|34650_36873_-\|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648

Protein	Function_ID	Function_description	E-value
NZ_CP023399.1\|WP_100914608.1\|44111_44450_+\|DUF3718-domain-containing-protein	gnl\|CDD\|378871	pfam12514, DUF3718, Protein of unknown function (DUF3718). This domain family is found in bacteria and viruses, and is approximately 70 amino acids in length. There is a single completely conserved residue C that may be functionally important.	7.28877e-15
NZ_CP023399.1\|WP_100914605.1\|38509_39232_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	3.77225e-09
NZ_CP023399.1\|WP_100914618.1\|61169_61610_+\|hypothetical-protein	gnl\|CDD\|375918	pfam18492, ORF_2_N, Open reading frame 2 N-terminal domain. This is the N-terminal domain found in ORF 2 (open reading frame 2), a protein encoded just downstream of asp (A. sobria serine protease). The ORF 2 N-terminal domain is essential for proper ASP folding. This domain is intrinsically disordered but forms some degree of secondary structure upon binding ASP.	2.57709e-10
NZ_CP023399.1\|WP_100914617.1\|59341_61159_+\|S8-family-serine-peptidase	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	5.12257e-94
NZ_CP023399.1\|WP_010558401.1\|52283_53006_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	6.3155e-129
NZ_CP023399.1\|WP_100914606.1\|39778_41008_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	0
NZ_CP023399.1\|WP_100914607.1\|41965_43177_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP023399.1\|WP_100914609.1\|44599_46279_+\|OmpA-family-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.24172e-71
NZ_CP023399.1\|WP_100914613.1\|53277_54102_-\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	0.000585371
NZ_CP023399.1\|WP_100914614.1\|54823_55423_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	9.32889e-49
NZ_CP023399.1\|WP_100914612.1\|49821_51990_+\|malate-synthase-G	gnl\|CDD\|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NZ_CP023399.1\|WP_040642196.1\|41029_41656_-\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	2.37156e-128
NZ_CP023399.1\|WP_100914615.1\|55787_57686_-\|beta-ketoacyl-synthase	gnl\|CDD\|238424	cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.	1.38365e-78
NZ_CP023399.1\|WP_100914616.1\|57814_58801_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	9.72577e-64
NZ_CP023399.1\|WP_010558407.1\|43194_43896_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	1.53179e-146
NZ_CP023399.1\|WP_100914604.1\|36963_38445_+\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	6.35189e-06
NZ_CP023399.1\|WP_100914611.1\|47960_49568_-\|isocitrate-lyase	gnl\|CDD\|180592	PRK06498, PRK06498, isocitrate lyase; Provisional.	0
NZ_CP023399.1\|WP_100914603.1\|34650_36873_-\|hypothetical-protein	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	3.5222e-55

>NZ_CP023399.1|WP_157813528.1|46396_47041_+|hypothetical-protein
MYNLLMDKASLSQVFLAFAPMEALKVKHNIDYALEALSLPSAELLAEMQVLGIDLPDKPSASKKVDLTTINSTVLSSHLTELFLDKHKLLKTFSDFSLSEQVELRAFLQSLMPMLHLPPQALVEKMQREGVLDVLMGESDKAKAVKDKIAALSQNKRDHKVDEVKERLAKLSNKPQQCADELKIARVKANLNKASVSDNAAIIADAKQKIVQLG
>NZ_CP023399.1|WP_100914609.1|44599_46279_+|OmpA-family-protein
MEQEKQQLIEQIISTAKREFDIDLAKEKLISEEEYRALVFTELLSLENAELSRLIEQFNASPSHQAHASQAEPISQPKQRNNGVIIAASVAVLALCAVGAWFGLSGDTTAQSGQVAAVPNKVISQKSAQMSKPTPVEKEPEAVYQSLFAIHGSNTIGEKLAPALLKAYFEEQGAKDIDWQQGRIATERTMQFEMDGEKLEIGLAAHGSSTAFKALNANMAQIGMSSRKIKTSEVEALKGQSGDLSKLGNEHIIALDGLAIIVNQNNPLKTITTETLSRIFSGEIDNWAEIGGDQAPIKVFARDDNSGTFDTFKSLVLKKYGRKLTKQAERFESSSELSEHVSRDDYAIGFIGLNYIRYSKALAIADSSDTKAIYPTRFTIATEDYPLARRLYLYTPTNSATQIKDFANFAISDRGQEIVQELGLISQSIRVEDVVASELAPDKYNQYAKLAKRLSLNFRFNYATRDLDNKGKRDLQRLVSFVEENPSRKLVLMGFSDSIGARDKNTMLSLSRAKSVEQELNARGINVYAVEGFGEDMPLANNDNEVGRERNRRVEVWVL
>NZ_CP023399.1|WP_100914608.1|44111_44450_+|DUF3718-domain-containing-protein
MKALATTAIAASLLMLPSAAIAFDKSTIESLLVQACKDVKSNKVLKLKTNLKTNHLTLPLISEKLMCNGESVYDFAMTHNADKTAKLLRTGSVSIHDVAYNSSDKIWVWLDD
>NZ_CP023399.1|WP_010558407.1|43194_43896_+|purine-nucleoside-phosphorylase
MSTPHINAQLNDFAETVLMPGDPLRAKHIAETFLEDAREVTSVRNILGYTGTYNGKPVSIMASGMGIPSMSIYARELIVSYGVKNLIRIGTCGGIGSDIKIRDVIFAQGASTDSNVNRARVQGYDFAAIANFDLLVNGVEAAKRLGIAAKVGNVFTTDTFYQASNDLYQKLDKLGVLAVDMETAGLYGVAAEYGANAMALFTVSDHVITGEATPSEERQNSFNEMVKIALESI
>NZ_CP023399.1|WP_100914607.1|41965_43177_+|phosphopentomutase
MARALILMADSLGIGAAPDAERFGDKGANTLAHLLAAYHGETGQKLALPNLSKLGLIDACEQASNTNCQVAERNAPIAAYGYAKEISSGKDTPSGHWEMAGVPVLFDWGYFHDKQNSFPDAFIAEFIKRANLPGILGNCHSSGTVILEALGEEHMQTGKPICYTSTDSVFQIACHEDTFGLERLYEICEIARELLDEYNIGRVIARPFLGDAADNFARTGNRRDYSVLPPAPTLLDKLAEDNGAVISIGKISDIYAHQGITEKHKAPGLENLMAKTAEVFKQAKDHSLTFVNLVDFDEKFGHRRDAIGYAKALKQLDDYLPEFLALLGKDDVLMITADHGCDPTWQGTDHTREYVPVLAYTPGMTPVNLGERETFADIGQTLATWFSLAPLEYGNGFKSQLGS
>NZ_CP023399.1|WP_040642196.1|41029_41656_-|uridine-kinase
MTRTIIAIAGASASGKSLFSQTIYNELLNELAPGAIAIIEEDAYYRDQSHLPFEHRTQTNYDHPDAFEHELLLEHLNQLKEGKPVDIPVYDYAKHTRSDQTRRIQPAKILIVEGILLLSDPKLCDEFNIKVFIDTPLDICLMRRMQRDLEERGRSLQSVIEQYQATVRPMFYQFIDPSKHNADVVVTRGGRNRVAIDILKSKIKQLLQ
>NZ_CP023399.1|WP_100914606.1|39778_41008_-|NupC/NupG-family-nucleoside-CNT-transporter
MTSLMSLVGIASLLALAFLCSTNRKKINLRTVGGAFALQVLIGAFVLYVPAGREVLNGISVGVANVISYANDGIRFLFGGLAGDEIDGIGFVFAIKVLPVIVFFSALVAVLYHLRVMDFVIKILGGGLQKLLGTSKPESLSATANIFVGQTEAPLVVKPFIATMTRSELFAVMVGGLATVAGSILAGYVSLGVELKYLIAASFMAAPGGFLMAKMMVPETETPKQDLNDLDHGEEKPINVIDAAAGGALNGMQLAMNVGAMLLAFVALIALSNGFVGWIGGWFDNPDLTIQQILGYAFAPIAWLLGIPWSEAQLAGSFIGQKLVVNEFVAYLDFMNYQAQLSEHTKAVVTFALCGFANLSSIAILLGGIGGMAPSRRKDIAQLGLRAVLAGSMANLMSAAIAGFFLSIA
>NZ_CP023399.1|WP_100914605.1|38509_39232_+|ABC-transporter-substrate-binding-protein
MLKKLLTASIITLSFSASAGAIRFGYNQQYSAPHVINNGKGTNVSGIVIDVSNAISQEAGFMAKQLPLPRKRIEQYLIDGKIDAQCHANPIWYNAPSIIWSEVLYSDADIIVSDQAIASLQALSSHKQFKLGTVLGYKYPNLTEYFEAGNLKRFNSTSSKDSLTRFTKGELDGFVASYSEANYLTRLRRFNVLEVNSYDLHCSFSPKLNAEKRQRLIDAAHKLRDNGEFKRVFAKYIKPE
>NZ_CP023399.1|WP_100914604.1|36963_38445_+|VCBS-repeat-containing-protein
MKIITALVVTLGFASTSSLANSKKNLFNEVAIETDLTLSHPVYPIDLLPNPGKELMLIGTHSGQQYIDIFAASEAQLYNRIKRVKVPDTMLGIDFTKWQDATQQVYLFSSNGIYQLALEGTELVVPVVDTQTYLKKSGAQHLSKMEFVYNINDDQKADFFTTDLNHSYVHISDETGYQMAKVDLPARLEIEGHSAEIEPPRFAFFDTNEDNISELIGFENGLLNLLPSVGSNPGQAIKLRDDIMVDDWWHTKDADGDSLDQSNLVYRKLERVVDVNHDGIFDLVVRYTRSSGALDRQNDYEIYLGAIEQGKFIFQNQTNSLIQDEGTLTDLHLLDIDNDKQLEALVSGFDIGVSQIIGALLSGSVSQDVHLFYQNEKGEFSPKNKITREVELSFSLSKGRSGSPVVLFADVNGDGKKDWVLSDEQKAFNVYLANNKHSFSRRASKYKTTLPMQGRRVVTSDLNLDGKDDLVMSYGRLDDKNMRKTIKILFATS
>NZ_CP023399.1|WP_100914603.1|34650_36873_-|hypothetical-protein
MIDKSNVATQNISYANVCRSDVMKELPEKYYLTHFIEFAEFIKSTSSHLLGDDETAFFAEFAKLPEDAQCILVRIVNRKSPFVRKDTLVYSEVADSGAAINLLRKVGFVSRISKHCFHDFIGQLNKQDLIDLSISLTIDKPAKSANKNKWLNFVSNALSNALSYDQVKKSPVLTSHIYFAKQDTFHYLLFLYFGHLSGRLNQFSMRDLGVMQTQSVQQQQANFSDKDEAKSAFYYANLFKAIKEANKSDIPLLQTLAEQLIASDKPIGFLATQKYHHSLYKLAIVLIEQESTLGETLLSQSQHPAAREKYIRLLYKSDRKAQCEALLLAILDDPDSETLLLFAEDFYAQKFNQKRTSVLTDMLKKSGEPIGIDEAYLGQVETGVKDRYIKQHRLCYFTENKLWRALFALTFWHELFQHPASQRANEFSYYPKVLKQDNFYDLLHTEIDHKLSEFTNSQQFCDYISATIDQYSGEPNGLFYWHNELKDVLTTFIQHAPFESIKHHLLAMSKTFKALCDGYPDLMYIEQGEVFFEEIKAPGDSLRRNQLVSIKQLINAGFNVSIQRTEWRFNSEQNYVVVDIETTGGKKDTHRITEIGMVRVEQGKITDSWQTLVNPERHIPKMITELTGISNEMVKDAPKFEQIAEKLDTFSRNAIFVAHNVNFDYGFIRQEFARLNKKYTRAKICTVQQARKYLPGFKSYSLGKLCCDLNIELKNHHRALDDAKAAAEILLRINHVRAEQ
>NZ_CP023399.1|WP_100914611.1|47960_49568_-|isocitrate-lyase
MAKQLTYQQEIDRIATLKEVGEKKWQNINPESAARMRLQNRFQNGLEIARYTADIMRKDMEAYDQDPSQYTQSLGCWHGFIGQQKMISIKKHFQNNTDRRYLYLSGWMVAALRSEFGPLPDQSMHEKTSVAALIEELYTFLRQADARELGGYFRELDAARKAGNSAEEETILAKINDHKTHVVPIIADIDAGFGNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGVDNGVIVARTDSLGAGLTKQIAVSNEPGDLGDQYNAFLDVEEIESTDIKNGDVILNRNGKLVRPKRLPSNLFQFRSGTGEERCVLDCITSLQNGADLLWIETEKPHVGQIGAMVNEIRKVVPNAKLVYNNSPSFNWTLNFRQQVFDIMVEEGKDVSQYNREQLMSVEYDNTELAALADEKIRTFQADAAREAGIFHHLITLPTYHTAALSTDNLAKEYFGEQGMLGYVKNVQRQEIRQGIACVKHQNMAGSDMGDDHKEYFSGDAALKAAGEDNTMNQFS
>NZ_CP023399.1|WP_100914612.1|49821_51990_+|malate-synthase-G
MTTRIHHAGLAVDPSLYAFINHQVIPGTGIDVEHFWQGFSKIVSEMTPINRALLVKRDDLQVQIDQYHQAHSNFEFDHYKQFLQQIGYLKPAPSDVTVVTESVEPEIATMAGPQLVVPVSNARFALNAANARWGSLYDALYGTDAISYDNGREAGRDYNPVRGNAVIDFGREFLDQALPLTYGSHKDASDYAIVDGKLIVTLNNVSQSALQSPEQLVGYNGTKQQPTELILKNNGLHIVIQFDENHQIGKQDSAHIKDIVLESALTTIMDCEDSVAAVDAEDKVGVYSNWLGLNKGDLSVEFEKGGKTLTRALNPDLTYTDLSGDEQQLKGRSLMLVRNVGHLMTNPAILDKNGDEVFEGIMDAVITSLIALHDLKGKSTRKNSRANSINIVKPKMHGPEEVAYANTLFCKVESLLNLPENTLKMGIMDEERRTSVNLAACIAEAKERVIFINTGFLDRTGDEIHTSMLAGPMLPKDAIKAQKWIGAYENNNVDVGLACGLSGKAQIGKGMWPMPDEMAQMLVQKTAHVQSGANTAWVPSPTAATLHAMHYHQQDVFSLQQEIKQRVAANVDDILCPPLHPEPKSMTSDAIQNELNNNAQGILGYMVRWVEQGVGCSKVPDINNVGLMEDRATLRISSQHMTNWLCHGVCSEKQVIDTLEAMAKVVDKQNEGDANYRNMSDNYAQSVAFQAALELVLSGTKQPNGYTEPVLHRRRLEFKAAS
>NZ_CP023399.1|WP_010558401.1|52283_53006_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRAFEVRKNAMAKTAAAKTKVNSKYGKEIYVAAKNGGAELDTNLSLKRLIEKAKKDQVPAHVIDKAIEKAKGGAGEDYQPARYEGFGPGNCMVIIDCLTDNPNRTIKDVRLAFTKTNSKIGGPGTAAHSFDHQAVFAFAGDNDEEVLEALMMADVDVTDVEVEDGIVSVFAPHTEFYNVKTALAEAFPDVKLDVEEITFVPQTSVDIEGDDIPLFQKFMDMLNDSDDVQNIYHNAIVQD
>NZ_CP023399.1|WP_100914613.1|53277_54102_-|autotransporter-domain-containing-protein
MLGITTGANAVEIKVGQSHSDLPLDQSGTLTSVTPSGTSFSLAHDFSESVRVSLDYINWEDTHFSRKANSLKIDSQSYAATLTYFIENFAISGNYTYWQSDYRESFLELPSSQHKTYAPSYGLSVGYGIFFDEWVIEPSLLVQYNEWRYRDIMIEQNEMALALRDALEDETLVVSGLLSASKIIEIRPDTYLLAGGVIRWNELFQGDGTKQTDKFVSFAGRKSYPHNTDDDYAELSVFVTYDITPEWMVELDSSIAFLPHDNVSSVSWRIGYRF
>NZ_CP023399.1|WP_010558399.1|54566_54800_+|hypothetical-protein
MDFYILKKGDELKAIPADKAICKSYEKSGYSYIDKVAACTEQAAINKLKGKTFETLKGPLLRLSVVIFALILLWWVS
>NZ_CP023399.1|WP_100914614.1|54823_55423_-|lytic-transglycosylase-domain-containing-protein
MLFFAFSAAAKPIYQYVKSDGSIAFTDRKPIKHSYSIYRTGCYACQLRSSLNWHKIPIYPDKYHLEIATASKQHNVDPALVRAMIHAESAFKANARSKKGAIGLMQLMPATAKYMGIKRPTQPSQNILGGVKYLSYLLEKFNGNIRLATAAYNAGPNAVKKYRGIPPFAETKAYVERVGILHNRYRVAINKKKRKISPS
>NZ_CP023399.1|WP_100914615.1|55787_57686_-|beta-ketoacyl-synthase
MTALPIVVGMGGINAAGRTSAHQGFRRIVIDKLTQEARQETFLGLATLMNLVRQENGELVDHENQAICASEIEAKFGEQIIAGTLIRKIENNHFDVDATHGHQKMTVMPSEGDSIVFETSARHLPSPQPRDWQIENLEGGKVKVTINGELSLKHDTYRDNPIKAAGQFPTGFDPSTLYNSRYQPRGLQATIFAATDAIKSTGLAWQDVLAVVDPDQIGTYSASVAGQMQDEAFGGMMKNRLRGDRVSTKNLALGLNTMSTDFINAYVTGNVGTTFTTSGACATFLYNLRAAVHDIKAGRTRVAIVGSVDCAITPEIVEGFGNMSALANIEGLKKLDNSDTPDLRRTSRPFGENCGFTIGEGAQFAVLMDDALALELGADVMGSVPDVFVNADGIKKSITAPGPGNYITMAKSVALATSILGEEAVQKRSYILAHGSSTPQNRVTESIIYDRVAKAFNIDNWKLAAPKAFVGHTIGPASGDQMAMALGIFSHNIMPGITTIDKVADDVYAERLDIRTEHYECEAQDIAFINSKGFGGNNATAPMFSANITLEMLTKRHGESAMASYRDKLTQTKQNQADYSAAANLGDYQLIYRFGDGLIDENDIELTQETLSLPGFTHSVKLTASNPFDDMV
>NZ_CP023399.1|WP_100914616.1|57814_58801_+|helix-turn-helix-domain-containing-protein
MTTKVRLLLYPQILATSVTLPVEMLKAGEASFHDRKNRTLDIKFVADKQELIQCRAGCAFLPELTVGCDDNADFIIVPGIWRNPRPVIKQNQAAIGYLKAQWQQGATIVGVGTGNCLLAEAGLLDHHAATTHWHYAKQFRKDYPKVDLKPEFFITQSERIFCAASLNSLADIMVYLIAQLFGRDAAQNVERNFSHEIRKPYEEQRYLEGAVDRHADELIAQIQFWLKNNASSELSMQHVAEQFGISQRTLSRRFKAATGTTANHYLQKMRLEMAQELLASTNLTVQDVAVAVGYVDQGYLTKVFKRELKQTPSDYRLLVRKKLFKTDS
>NZ_CP023399.1|WP_100914617.1|59341_61159_+|S8-family-serine-peptidase
MKIKIKPSLLAASVILACTPAIAKITDSTFPLQNGDPLVAEQWHLQNIGQTGFSQSAGTSGNDLDIDFTHLMGIKGRGITVSVIDSGVEIDHPDLRANVVAGSLNLGDGSDYPQDNNGHGTSVAGLIAATEANGLGGRGVAPHANIVGFNYLPNQTVGNWLVSHGLSEDFRQLDRFTDPRVFNQSYGSTPATPVVHNYVLNPWQELQDDVYRYITEQSHWGRGSVYVKSAGNSFGTYNAYYQGVPILVLPYENNQFFNNQGLPFHNANIAPDNNNHWNLVVSALDAHGKLTSYSSVGSNVFVAAPGGEFGEAAPAMVTIDLQGCEAGSNVAGEHGNALHGGSELDPNCDYTGTMNGTSSAAPNTSGAIANIMSANHALDARAIRHILAQTARKTDENHPGVDLTFENADGELVTYNAIPSWQRNAAGYNFHQFYGFGAVDVDDAVYKALFTPVTPLPEQVITPWQTQIADAEIPDASLTGATSTLAFEQDVTVEAVQVKLNIDHTRLRDLAIELISPSGTRSVLMSARTGWLGSTEGGYTDTLMLSNHFYGEAAQGEWQLKVIDTDKGSSFTVGYNASIGLVGFNRNNNVENGVLKDWSLRVIGH
>NZ_CP023399.1|WP_100914618.1|61169_61610_+|hypothetical-protein
MKKLFIIAALTLSTQAAIANSAEQFKGLTITPVEQLTLAQSEVIVNDKTFKTNGTKTVVPGLDVFDVSGLNAYTVTGEIIVKLSGDVDFEQFNKDNDLIIKQAFKSYYILKSQSQRDLLPLVDALKKLEGVSSVTLELVDKGVIEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP023399_2	2.1\|47632\|19\|NZ_CP023399\|CRISPRCasFinder	47632-47650	19	NZ_CP023398.1	2407484-2407502	0	1.0

1. spacer 2.1|47632|19|NZ_CP023399|CRISPRCasFinder matches to position: 2407484-2407502, mismatch: 0, identity: 1.0

tttttttagcggtaatctt	CRISPR spacer
tttttttagcggtaatctt	Protospacer
*******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023399_1	1.2\|47330\|29\|NZ_CP023399\|CRISPRCasFinder	47330-47358	29	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	721315-721343	4	0.862
NZ_CP023399_1	1.2\|47330\|29\|NZ_CP023399\|CRISPRCasFinder	47330-47358	29	HG796835	Uncultured bacterium plasmid pRGF00158	2281-2309	5	0.828
NZ_CP023399_1	1.3\|47383\|27\|NZ_CP023399\|CRISPRCasFinder	47383-47409	27	FJ870916	Sulfolobus spindle-shaped virus 7, complete genome	101-127	5	0.815
NZ_CP023399_1	1.2\|47330\|29\|NZ_CP023399\|CRISPRCasFinder	47330-47358	29	NZ_CP045608	Bacillus cereus strain SB1 plasmid p2, complete sequence	150267-150295	7	0.759
NZ_CP023399_1	1.2\|47330\|29\|NZ_CP023399\|CRISPRCasFinder	47330-47358	29	NZ_CP042405	Leuconostoc mesenteroides strain CBA3628 plasmid unnamed1, complete sequence	22287-22315	8	0.724
NZ_CP023399_1	1.2\|47330\|29\|NZ_CP023399\|CRISPRCasFinder	47330-47358	29	NZ_CP046063	Leuconostoc mesenteroides subsp. mesenteroides strain CBA3607 plasmid unnamed1, complete sequence	26470-26498	8	0.724

1. spacer 1.2|47330|29|NZ_CP023399|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 4, identity: 0.862

taaaaacacaaaaatgtcgttttattgat	CRISPR spacer
ttcaaacaaaaaaatgtcgttttaatgat	Protospacer
*  ***** *************** ****

2. spacer 1.2|47330|29|NZ_CP023399|CRISPRCasFinder matches to HG796835 (Uncultured bacterium plasmid pRGF00158) position: , mismatch: 5, identity: 0.828

taaaaacacaaaaatgtcgttttattgat	CRISPR spacer
caaacacacaaaaatgtcgttttgtttct	Protospacer
.*** ******************.**  *

3. spacer 1.3|47383|27|NZ_CP023399|CRISPRCasFinder matches to FJ870916 (Sulfolobus spindle-shaped virus 7, complete genome) position: , mismatch: 5, identity: 0.815

ttaaggaatttgatcattaatttacta	CRISPR spacer
ataaggaatttcatgattaatttaatg	Protospacer
 ********** ** ********* *.

4. spacer 1.2|47330|29|NZ_CP023399|CRISPRCasFinder matches to NZ_CP045608 (Bacillus cereus strain SB1 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.759

taaaaacacaaaaatgtcgttttattgat	CRISPR spacer
taaaaacacaaaaatttcatttttagggg	Protospacer
*************** **.****   *.

5. spacer 1.2|47330|29|NZ_CP023399|CRISPRCasFinder matches to NZ_CP042405 (Leuconostoc mesenteroides strain CBA3628 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

taaaaacacaaaaatgtcgttttattgat	CRISPR spacer
caaaaacaaaaaaatgtggttttaaacca	Protospacer
.******* ******** ******

6. spacer 1.2|47330|29|NZ_CP023399|CRISPRCasFinder matches to NZ_CP046063 (Leuconostoc mesenteroides subsp. mesenteroides strain CBA3607 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

taaaaacacaaaaatgtcgttttattgat	CRISPR spacer
caaaaacaaaaaaatgtggttttaaacca	Protospacer
.******* ******** ******

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023398

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP023400

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP023399

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection