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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP025082 Listeria monocytogenes strain MF4626 chromosome, complete genome 3 crisprs DinG,cas3,WYL,casR,DEDDh,csa3 0 1 6 0
NZ_CP025083 Listeria monocytogenes strain MF4626 plasmid pMF4626, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. NZ_CP025082
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025082_1 210295-210446 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025082_2 543122-543410 Orphan I-A
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025082_3 2809704-2809814 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP025082_2 2.3|543281|35|NZ_CP025082|PILER-CR,CRISPRCasFinder,CRT 543281-543315 35 MH341453 Listeria phage PSU-VKH-LP041, complete genome 10139-10173 1 0.971
NZ_CP025082_2 2.3|543281|35|NZ_CP025082|PILER-CR,CRISPRCasFinder,CRT 543281-543315 35 NC_009813 Listeria phage B054, complete genome 10139-10173 2 0.943

1. spacer 2.3|543281|35|NZ_CP025082|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.971

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaa	Protospacer
*****************.*****************

2. spacer 2.3|543281|35|NZ_CP025082|PILER-CR,CRISPRCasFinder,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaa	Protospacer
*****************.**.**************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 120653 : 127178 10 Listeria_phage(33.33%) tail NA
DBSCAN-SWA_2 1122851 : 1130274 8 Hokovirus(33.33%) NA NA
DBSCAN-SWA_3 1244323 : 1323146 95 Listeria_phage(81.36%) terminase,portal,holin,protease,tRNA,capsid,integrase,tail attL 1244207:1244223|attR 1285444:1285460
DBSCAN-SWA_4 1856760 : 1865046 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 2379826 : 2421619 63 Listeria_phage(96.3%) plate,terminase,portal,holin,capsid,tail NA
DBSCAN-SWA_6 2565780 : 2573624 7 Streptococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP025083
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 40552 : 49635 9 Streptococcus_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage