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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP025077 Enterococcus faecium strain LS170308 chromosome, complete genome 0 crisprs csa3,cas14j,DEDDh,cas3,DinG,cas2 0 0 193 0
NZ_CP025078 Enterococcus faecium strain LS170308 plasmid unnamed, complete sequence 0 crisprs NA 0 0 2 0

Results visualization

1. NZ_CP025077
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 4987 4 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_2 13477 : 21718 8 Streptococcus_phage(33.33%) integrase,transposase attL 13359:13392|attR 23752:23785
DBSCAN-SWA_3 24756 : 34613 9 Bacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_4 41827 : 46723 3 Klebsiella_phage(50.0%) protease NA
DBSCAN-SWA_5 61063 : 71835 5 Anomala_cuprea_entomopoxvirus(33.33%) NA NA
DBSCAN-SWA_6 83643 : 84774 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_7 91467 : 98104 5 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 104895 : 105759 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_9 114149 : 118997 4 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_10 124227 : 127035 3 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_11 132143 : 133556 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_12 137661 : 140209 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_13 144244 : 148143 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_14 153067 : 158471 5 Planktothrix_phage(25.0%) NA NA
DBSCAN-SWA_15 163921 : 173121 8 Abalone_herpesvirus(25.0%) tRNA NA
DBSCAN-SWA_16 177263 : 178829 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_17 192216 : 200124 6 Cafeteria_roenbergensis_virus(25.0%) protease,tRNA NA
DBSCAN-SWA_18 208435 : 209629 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_19 212951 : 229850 10 Bacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_20 263475 : 265848 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_21 287232 : 288542 2 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_22 299965 : 304958 5 Tupanvirus(50.0%) portal NA
DBSCAN-SWA_23 308178 : 310392 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_24 313707 : 319916 4 Orpheovirus(33.33%) tRNA NA
DBSCAN-SWA_25 326205 : 329400 1 Gordonia_phage(100.0%) NA NA
DBSCAN-SWA_26 342848 : 404645 58 Bacillus_phage(15.0%) protease,transposase,tRNA NA
DBSCAN-SWA_27 408258 : 410567 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_28 426622 : 427783 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_29 435493 : 441914 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_30 461013 : 467244 7 Lactococcus_phage(25.0%) NA NA
DBSCAN-SWA_31 476420 : 482647 4 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_32 492396 : 499190 6 Planktothrix_phage(40.0%) tRNA NA
DBSCAN-SWA_33 505327 : 511448 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_34 521782 : 598472 63 Bacillus_phage(13.33%) transposase,tRNA NA
DBSCAN-SWA_35 603346 : 603907 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_36 607150 : 648027 35 Bacillus_phage(25.0%) integrase,transposase,tRNA attL 598947:598963|attR 635119:635135
DBSCAN-SWA_37 662969 : 675546 13 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_38 679086 : 681803 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_39 685447 : 686188 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_40 706131 : 708324 2 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_41 729333 : 733707 2 Bodo_saltans_virus(50.0%) tRNA NA
DBSCAN-SWA_42 736815 : 738093 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_43 745994 : 746270 1 Lactococcus_phage(100.0%) integrase attL 745528:745541|attR 748883:748896
DBSCAN-SWA_44 754773 : 758225 4 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_45 762643 : 763864 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_46 773179 : 781332 7 uncultured_marine_virus(25.0%) NA NA
DBSCAN-SWA_47 789157 : 796632 8 Indivirus(20.0%) NA NA
DBSCAN-SWA_48 802997 : 810378 6 Streptococcus_phage(33.33%) protease NA
DBSCAN-SWA_49 818172 : 818910 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_50 826322 : 826970 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_51 834364 : 838691 3 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_52 843498 : 850093 4 Moraxella_phage(50.0%) NA NA
DBSCAN-SWA_53 855179 : 858982 3 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_54 888028 : 890286 2 Paramecium_bursaria_Chlorella_virus(50.0%) transposase NA
DBSCAN-SWA_55 894082 : 899094 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_56 902758 : 903313 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_57 909653 : 918537 6 Streptococcus_phage(75.0%) transposase NA
DBSCAN-SWA_58 925026 : 934420 10 Streptococcus_phage(60.0%) NA NA
DBSCAN-SWA_59 949625 : 959441 9 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_60 965494 : 968014 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_61 972255 : 979079 7 Paramecium_bursaria_Chlorella_virus(25.0%) NA NA
DBSCAN-SWA_62 986878 : 993291 7 Hokovirus(33.33%) tRNA NA
DBSCAN-SWA_63 998882 : 1000574 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_64 1007216 : 1008029 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_65 1012243 : 1021353 6 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_66 1038998 : 1046402 6 Chrysochromulina_ericina_virus(50.0%) NA NA
DBSCAN-SWA_67 1050168 : 1058231 6 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_68 1069002 : 1072533 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_69 1075973 : 1077224 1 Bacillus_virus(100.0%) protease NA
DBSCAN-SWA_70 1085401 : 1089689 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_71 1093008 : 1097401 4 Catovirus(33.33%) NA NA
DBSCAN-SWA_72 1100859 : 1102743 1 Herpes_simplex_virus(100.0%) NA NA
DBSCAN-SWA_73 1106477 : 1107644 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_74 1111457 : 1113194 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_75 1126754 : 1127486 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_76 1134147 : 1137674 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_77 1140860 : 1220396 91 Bacillus_phage(22.22%) capsid,transposase,terminase,integrase,portal,protease,tRNA,holin,plate,tail attL 1157307:1157324|attR 1202341:1202358
DBSCAN-SWA_78 1224625 : 1225627 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_79 1232434 : 1232635 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_80 1239013 : 1243091 5 Archaeal_BJ1_virus(50.0%) NA NA
DBSCAN-SWA_81 1268556 : 1270086 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_82 1288966 : 1292038 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_83 1295265 : 1298277 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_84 1310454 : 1311303 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_85 1322701 : 1328224 5 Bacillus_phage(66.67%) transposase NA
DBSCAN-SWA_86 1344534 : 1346763 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_87 1349937 : 1350708 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_88 1364674 : 1370976 6 Halovirus(25.0%) NA NA
DBSCAN-SWA_89 1374537 : 1374771 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_90 1377896 : 1382752 3 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_91 1387092 : 1390943 3 Emiliania_huxleyi_virus(33.33%) transposase NA
DBSCAN-SWA_92 1395441 : 1396089 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_93 1400099 : 1400798 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_94 1405689 : 1415851 9 Streptococcus_phage(16.67%) transposase NA
DBSCAN-SWA_95 1421843 : 1426054 3 Pithovirus(50.0%) NA NA
DBSCAN-SWA_96 1431197 : 1432553 1 Ugandan_cassava_brown_streak_virus(100.0%) NA NA
DBSCAN-SWA_97 1435699 : 1436437 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_98 1440295 : 1445780 3 Orpheovirus(50.0%) tRNA NA
DBSCAN-SWA_99 1449482 : 1450949 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_100 1457842 : 1461508 4 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_101 1464910 : 1469414 4 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_102 1472572 : 1475378 2 Clostridium_botulinum_C_phage(50.0%) NA NA
DBSCAN-SWA_103 1486117 : 1487890 1 Acanthamoeba_polyphaga_mimivirus(100.0%) NA NA
DBSCAN-SWA_104 1491356 : 1492763 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_105 1496988 : 1506487 7 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_106 1510503 : 1522711 12 Prochlorococcus_phage(25.0%) NA NA
DBSCAN-SWA_107 1531821 : 1536241 5 Clostridium_botulinum_C_phage(50.0%) transposase NA
DBSCAN-SWA_108 1543116 : 1544136 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_109 1549601 : 1553843 6 Oenococcus_phage(50.0%) NA NA
DBSCAN-SWA_110 1558687 : 1559653 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_111 1571032 : 1578048 3 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_112 1581310 : 1589637 7 Erwinia_phage(25.0%) protease,tRNA NA
DBSCAN-SWA_113 1595244 : 1600327 5 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_114 1603822 : 1606498 3 unidentified_phage(50.0%) tRNA NA
DBSCAN-SWA_115 1609708 : 1609984 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_116 1614512 : 1615916 1 Acanthamoeba_polyphaga_mimivirus(100.0%) NA NA
DBSCAN-SWA_117 1623381 : 1625979 4 uncultured_Mediterranean_phage(66.67%) NA NA
DBSCAN-SWA_118 1630051 : 1637259 5 Synechococcus_phage(25.0%) NA NA
DBSCAN-SWA_119 1640991 : 1645220 4 Aureococcus_anophage(50.0%) NA NA
DBSCAN-SWA_120 1651620 : 1654287 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_121 1676906 : 1678346 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_122 1687704 : 1706697 15 uncultured_virus(28.57%) tRNA NA
DBSCAN-SWA_123 1711968 : 1715845 4 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_124 1722461 : 1723160 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_125 1734469 : 1743201 9 Erwinia_phage(25.0%) NA NA
DBSCAN-SWA_126 1750646 : 1754182 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_127 1758438 : 1759341 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_128 1765847 : 1766786 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_129 1775161 : 1776742 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_130 1782346 : 1783033 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_131 1788515 : 1791397 4 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_132 1794766 : 1795063 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_133 1804209 : 1807053 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_134 1813994 : 1815293 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_135 1822021 : 1822948 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_136 1831008 : 1832376 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_137 1852535 : 1863534 9 Staphylococcus_phage(20.0%) NA NA
DBSCAN-SWA_138 1887888 : 1905204 14 Mycoplasma_phage(33.33%) NA NA
DBSCAN-SWA_139 1913131 : 1918452 6 Cafeteria_roenbergensis_virus(33.33%) tRNA NA
DBSCAN-SWA_140 1924139 : 1924889 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_141 1929849 : 1930755 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_142 1938612 : 1941494 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_143 1950989 : 1960383 6 Planktothrix_phage(25.0%) NA NA
DBSCAN-SWA_144 1969070 : 1974540 5 Lactobacillus_virus(25.0%) NA NA
DBSCAN-SWA_145 1989735 : 1993205 2 Brazilian_cedratvirus(50.0%) NA NA
DBSCAN-SWA_146 2003753 : 2004926 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_147 2008137 : 2009457 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_148 2018817 : 2019465 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_149 2026786 : 2027932 1 Oenococcus_phage(100.0%) NA NA
DBSCAN-SWA_150 2033817 : 2039242 5 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_151 2042692 : 2050297 7 Bacillus_phage(50.0%) integrase attL 2035883:2035897|attR 2049748:2049762
DBSCAN-SWA_152 2060387 : 2073155 14 Streptococcus_phage(33.33%) integrase attL 2059511:2059527|attR 2070307:2070323
DBSCAN-SWA_153 2078187 : 2079845 2 Acanthamoeba_polyphaga_mimivirus(50.0%) NA NA
DBSCAN-SWA_154 2088952 : 2097018 7 Enterococcus_phage(25.0%) NA NA
DBSCAN-SWA_155 2100985 : 2105324 6 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_156 2116496 : 2123726 8 Paenibacillus_phage(25.0%) transposase NA
DBSCAN-SWA_157 2132015 : 2132624 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_158 2136857 : 2137604 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_159 2146142 : 2147525 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_160 2162020 : 2165354 4 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_161 2172233 : 2176121 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_162 2187619 : 2188321 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_163 2193383 : 2195528 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_164 2198712 : 2199465 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_165 2205480 : 2209673 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_166 2223280 : 2228658 3 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_167 2236290 : 2241231 4 Pectobacterium_phage(50.0%) tRNA NA
DBSCAN-SWA_168 2252548 : 2257737 6 Ostreococcus_tauri_virus(33.33%) NA NA
DBSCAN-SWA_169 2272432 : 2277508 3 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_170 2301839 : 2302973 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_171 2314934 : 2373013 49 Staphylococcus_phage(26.67%) transposase,tRNA NA
DBSCAN-SWA_172 2378790 : 2380077 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_173 2389243 : 2389990 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_174 2395864 : 2398986 4 Agrobacterium_phage(50.0%) NA NA
DBSCAN-SWA_175 2423673 : 2431560 5 uncultured_Mediterranean_phage(33.33%) tRNA,holin NA
DBSCAN-SWA_176 2453592 : 2457100 4 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_177 2460192 : 2466578 6 Ostreococcus_lucimarinus_virus(33.33%) NA NA
DBSCAN-SWA_178 2473008 : 2475000 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_179 2478753 : 2479317 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_180 2484298 : 2485039 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_181 2491204 : 2501792 8 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_182 2507300 : 2509170 3 Pneumococcus_phage(33.33%) NA NA
DBSCAN-SWA_183 2512203 : 2512938 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_184 2524192 : 2526847 3 Brazilian_cedratvirus(50.0%) NA NA
DBSCAN-SWA_185 2535420 : 2536107 1 Megavirus(100.0%) NA NA
DBSCAN-SWA_186 2540164 : 2545833 5 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_187 2557519 : 2559204 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_188 2573977 : 2582899 9 Klosneuvirus(25.0%) NA NA
DBSCAN-SWA_189 2586269 : 2591620 5 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_190 2594871 : 2596437 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_191 2600600 : 2605849 5 Pandoravirus(50.0%) transposase NA
DBSCAN-SWA_192 2617111 : 2623707 4 Tupanvirus(25.0%) NA NA
DBSCAN-SWA_193 2626816 : 2627329 1 Temperate_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP025078
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1046 : 20079 19 Streptococcus_phage(76.92%) transposase NA
DBSCAN-SWA_2 24993 : 34752 10 Streptococcus_phage(57.14%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage