CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP025148	Klebsiella pneumoniae strain KP1766 plasmid KP1766_p2, complete sequence	0 crisprs	csa3	10
NZ_CP025146	Klebsiella pneumoniae strain KP1766 chromosome, complete genome	1 crisprs	RT,csa3,cas3,DEDDh,DinG,WYL	8
NZ_CP025147	Klebsiella pneumoniae strain KP1766 plasmid KP1766_p1, complete sequence	0 crisprs	RT,DEDDh	3

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

778 : 43817

Escherichia_phage(57.45%)

tail,head,portal,lysis,terminase,holin,transposase,plate,capsid,integrase

attL 4854:4872|attR 49407:49425

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101169249.1\|778_1804_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.1e-83	49.1
WP_000703827.1\|2516_2789_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001207227.1\|2837_4019_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	2.4e-11	28.7
WP_001151304.1\|4022_4808_-	ParA family protein	A0A1X9IGI7	Lactococcus_phage	6.1e-11	26.4
4854:4872	attL	NA	NA	NA	NA
WP_000338945.1\|4981_5293_-	hypothetical protein	NA	NA	NA	NA
WP_001043260.1\|5599_6415_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000251875.1\|6501_6804_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001445143.1\|6697_6949_-	hypothetical protein	NA	NA	NA	NA
WP_000242922.1\|7455_7893_-	DUF4102 domain-containing protein	Q858E8	Salmonella_phage	2.4e-25	69.9
WP_000058871.1\|8098_8530_-	hypothetical protein	NA	NA	NA	NA
WP_001337763.1\|8543_9791_-	site-specific DNA-methyltransferase	H8ZMF1	Synechococcus_phage	1.2e-05	20.9
WP_001258027.1\|9780_10143_-	hypothetical protein	NA	NA	NA	NA
WP_001096362.1\|10145_10388_-	hypothetical protein	NA	NA	NA	NA
WP_000268395.1\|10822_11761_-	hypothetical protein	A0A2P9HXK7	Yersinia_phage	1.5e-69	50.2
WP_000435224.1\|11877_12423_-	hypothetical protein	NA	NA	NA	NA
WP_001256128.1\|12425_12995_-	hypothetical protein	NA	NA	NA	NA
WP_000004673.1\|13006_13570_-	hypothetical protein	NA	NA	NA	NA
WP_000468308.1\|13749_13968_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_032413567.1\|14049_15213_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	3.1e-205	99.2
WP_032413566.1\|15212_15692_-\|tail	phage tail protein	O64315	Escherichia_phage	1.5e-84	99.4
WP_032413565.1\|15706_18154_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	99.1
WP_000785970.1\|18146_18266_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001461862.1\|18298_18574_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.3e-40	98.9
WP_001251408.1\|18630_19149_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001286737.1\|19161_20352_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.8e-224	99.5
WP_001322808.1\|20411_21011_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	3.4e-102	95.9
WP_001322807.1\|21035_21425_+	hypothetical protein	M1FN94	Enterobacteria_phage	5.5e-13	52.9
WP_001106830.1\|21446_21887_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.5e-54	71.0
WP_001030526.1\|21858_22461_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	2.9e-93	86.0
WP_032413564.1\|22460_23795_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.4e-177	68.7
WP_001285340.1\|23791_24403_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.7e-117	100.0
WP_064987485.1\|24395_25304_-\|plate	baseplate assembly protein	Q858V6	Yersinia_virus	5.7e-162	99.3
WP_000127164.1\|25308_25656_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	1.3e-58	100.0
WP_032413562.1\|25652_26288_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	3.2e-111	97.6
WP_032413561.1\|26354_26807_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	2.6e-75	98.7
WP_032413560.1\|26799_27267_-\|tail	phage tail protein	A0A0F7LDF5	Escherichia_phage	6.9e-79	97.4
WP_000040630.1\|27374_27800_-\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	2.3e-65	95.7
WP_021563761.1\|27787_28213_-	hypothetical protein	M1SV74	Escherichia_phage	1.2e-58	97.9
WP_001144101.1\|28227_28725_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000123123.1\|28724_29006_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_000846409.1\|29009_29213_-\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
WP_032413559.1\|29212_29722_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	2.5e-90	99.4
WP_032413558.1\|29821_30565_-\|terminase	terminase endonuclease subunit	Q94MH8	Enterobacteria_phage	6.0e-125	99.2
WP_001248583.1\|30568_31642_-\|capsid	phage major capsid protein, P2 family	Q94MK2	Enterobacteria_phage	6.7e-202	100.0
WP_001607695.1\|31700_32555_-\|capsid	GPO family capsid scaffolding protein	A0A0F7LA11	Escherichia_phage	1.7e-139	100.0
WP_032413555.1\|32728_34501_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCM8	Escherichia_phage	0.0e+00	99.3
WP_032413553.1\|34500_35535_+\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	1.6e-200	99.4
WP_000725496.1\|35929_37474_+	RNA-directed DNA polymerase	A0A0F7LCK9	Escherichia_phage	4.7e-289	99.0
WP_032413551.1\|37961_40238_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	99.5
WP_000027673.1\|40227_40503_-	hypothetical protein	S4TP00	Salmonella_phage	1.9e-44	97.8
WP_001113264.1\|40499_40724_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_001277898.1\|40726_41026_-	hypothetical protein	S4TUD1	Salmonella_phage	3.2e-45	99.0
WP_000557703.1\|41025_41250_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_000217677.1\|41313_41814_-	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	4.5e-92	100.0
WP_001081582.1\|41991_42267_-	hypothetical protein	Q1JS60	Enterobacteria_phage	1.3e-48	100.0
WP_000020919.1\|42388_42688_+	helix-turn-helix domain-containing protein	Q1JS61	Enterobacteria_phage	2.4e-48	100.0
WP_000985261.1\|42803_43817_+\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	4.1e-193	99.1
49407:49425	attR	NA	NA	NA	NA

DBSCAN-SWA_2

55545 : 95697

Escherichia_phage(46.15%)

transposase,integrase

attL 63793:63808|attR 92915:92930

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012569499.1\|55545_56526_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	98.8
WP_001167032.1\|56834_57692_-	hypothetical protein	NA	NA	NA	NA
WP_000972663.1\|57678_57909_-	hypothetical protein	NA	NA	NA	NA
WP_000210758.1\|57908_58427_-	nitrite reductase	NA	NA	NA	NA
WP_000919345.1\|58423_58870_-	Fe3+-siderophore ABC transporter permease	NA	NA	NA	NA
WP_000422768.1\|58869_59229_-	hypothetical protein	A0A076G835	Escherichia_phage	5.6e-20	49.4
WP_000591074.1\|59285_59714_-	hypothetical protein	NA	NA	NA	NA
WP_000139698.1\|59747_60608_-	DsbA family protein	NA	NA	NA	NA
WP_001326179.1\|60623_61601_-	S49 family peptidase	Q9JMP1	Wolbachia_phage	7.1e-17	31.5
WP_000539392.1\|61582_62437_-	hypothetical protein	NA	NA	NA	NA
WP_000902149.1\|62441_62756_-	hypothetical protein	NA	NA	NA	NA
WP_001326180.1\|62745_63189_-	hypothetical protein	NA	NA	NA	NA
WP_000805800.1\|63315_63837_-	hypothetical protein	NA	NA	NA	NA
63793:63808	attL	NA	NA	NA	NA
WP_077264454.1\|63839_64301_-	hypothetical protein	NA	NA	NA	NA
WP_000849071.1\|64365_64974_-	hypothetical protein	NA	NA	NA	NA
WP_000946102.1\|65242_66358_+	phosphoadenosine phosphosulfate reductase family protein	H7BVI4	unidentified_phage	6.4e-46	29.1
WP_000883925.1\|66375_66810_+	hypothetical protein	NA	NA	NA	NA
WP_000350011.1\|67846_68947_-	plasmid replication protein	NA	NA	NA	NA
WP_000375812.1\|69223_69790_-	hypothetical protein	NA	NA	NA	NA
WP_000077458.1\|70261_71245_+	ParM/StbA family protein	A7KUY1	Bacillus_phage	2.1e-08	24.4
WP_000919078.1\|71261_71555_+	hypothetical protein	NA	NA	NA	NA
WP_000651490.1\|71556_71976_+	H-NS histone family protein	NA	NA	NA	NA
WP_001020646.1\|72035_72587_-	hypothetical protein	NA	NA	NA	NA
WP_000891157.1\|72583_73192_-	hypothetical protein	NA	NA	NA	NA
WP_000790610.1\|73202_73736_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_000356489.1\|73735_74008_-	nucleotide excision repair protein	A0A2H4J3B6	uncultured_Caudovirales_phage	1.3e-08	41.0
WP_000683483.1\|74723_75086_+	hypothetical protein	NA	NA	NA	NA
WP_000534551.1\|75123_78738_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_101169250.1\|78865_79648_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.2e-138	99.2
WP_000255956.1\|79644_80667_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
WP_101134910.1\|80733_82143_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_001326396.1\|82144_83185_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000811656.1\|83295_84807_-	ATP-dependent helicase	A0A2D1GN12	Pseudoalteromonas_phage	3.6e-44	30.7
WP_000101568.1\|85093_86134_-	DNA-binding protein	NA	NA	NA	NA
WP_004152391.1\|86350_88066_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004152392.1\|88175_91205_+\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004199214.1\|91311_92337_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152394.1\|92333_93113_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
92915:92930	attR	NA	NA	NA	NA
WP_004199234.1\|93246_94128_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_101169251.1\|94377_95697_-\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	2.4e-12	23.9

DBSCAN-SWA_3

103369 : 148833

Salmonella_phage(21.43%)

transposase,integrase

attL 122713:122728|attR 151582:151597

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000935451.1\|103369_105085_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_001381192.1\|105087_106080_+	AAA family ATPase	NA	NA	NA	NA
WP_000259031.1\|106675_107515_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|107508_107856_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_015059044.1\|108083_108638_-	aminoglycoside 6'-N-acetyltransferase AAC(6')-33	NA	NA	NA	NA
WP_000381802.1\|108738_109272_-	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
WP_101169252.1\|109417_110431_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	8.9e-71	44.8
WP_001162012.1\|110736_111294_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_064987470.1\|111296_114269_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
WP_000427620.1\|114347_115352_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_001217881.1\|115793_116351_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_000027057.1\|116533_117394_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|117464_118169_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000993245.1\|118356_118569_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001446012.1\|118531_118651_+	hypothetical protein	NA	NA	NA	NA
WP_001087807.1\|118634_118871_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277466.1\|118867_119233_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000209296.1\|119250_120936_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_000522996.1\|120974_121400_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|121427_121703_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294656.1\|121718_122084_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|122155_122611_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000139718.1\|122600_123083_-	hypothetical protein	NA	NA	NA	NA
122713:122728	attL	NA	NA	NA	NA
WP_000997323.1\|123079_123949_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.5e-23	35.1
WP_000543934.1\|123953_124964_-\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
WP_000949433.1\|124966_125503_-	hypothetical protein	NA	NA	NA	NA
WP_000243801.1\|125801_126122_-	hypothetical protein	NA	NA	NA	NA
WP_000278322.1\|126344_126947_+	hypothetical protein	NA	NA	NA	NA
WP_000791469.1\|126962_127415_-	hypothetical protein	NA	NA	NA	NA
WP_000243483.1\|127581_127917_-	hypothetical protein	NA	NA	NA	NA
WP_000787563.1\|128175_128448_-	MafI family immunity protein	NA	NA	NA	NA
WP_032413490.1\|128444_132707_-	type IV secretion protein Rhs	A0A2H4JHK7	uncultured_Caudovirales_phage	5.8e-23	53.4
WP_000988732.1\|132839_133565_-	hypothetical protein	NA	NA	NA	NA
WP_001337692.1\|133678_134080_-	hypothetical protein	NA	NA	NA	NA
WP_000714162.1\|134299_134539_-	permease	NA	NA	NA	NA
WP_000268337.1\|134611_134890_-	hypothetical protein	NA	NA	NA	NA
WP_000122923.1\|134876_136604_-	hypothetical protein	A0A0P0ZFY3	Escherichia_phage	9.9e-14	32.6
WP_001077335.1\|136781_137168_-	hypothetical protein	NA	NA	NA	NA
WP_000595210.1\|137625_138477_-	hypothetical protein	A0A219UQS0	Bacillus_phage	3.6e-09	29.4
WP_000064432.1\|138551_139109_-	hypothetical protein	NA	NA	NA	NA
WP_000260293.1\|139182_139401_-	hypothetical protein	NA	NA	NA	NA
WP_000184110.1\|139414_139684_-	hypothetical protein	NA	NA	NA	NA
WP_000071870.1\|139676_140282_-	5'-deoxynucleotidase	NA	NA	NA	NA
WP_000050848.1\|140353_140557_-	hypothetical protein	NA	NA	NA	NA
WP_101134912.1\|140758_143212_-	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA
WP_000042274.1\|143299_143686_-	hypothetical protein	NA	NA	NA	NA
WP_001093868.1\|143918_144473_-	hypothetical protein	NA	NA	NA	NA
WP_015058950.1\|144546_145023_-	hypothetical protein	NA	NA	NA	NA
WP_000201432.1\|145038_146664_-	DNA cytosine methyltransferase	A0A0N9SK84	Staphylococcus_phage	1.2e-05	25.8
WP_000410925.1\|146741_147044_-	hypothetical protein	NA	NA	NA	NA
WP_000209093.1\|147121_147466_-	hypothetical protein	NA	NA	NA	NA
WP_001300563.1\|147720_148833_+\|transposase	IS4-like element IS421 family transposase	NA	NA	NA	NA
151582:151597	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP025146

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025146_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025146_1

4498568-4498662

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025146_1

>merge|NZ_CP025146|1|4498568-4498662|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP025146|1|1|4498568-4498662|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025146.1\|WP_002888323.1\|4507725_4508103_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP025146.1\|WP_004177424.1\|4487686_4489189_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP025146.1\|WP_002888347.1\|4496395_4496935_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP025146.1\|WP_002888332.1\|4501149_4501977_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP025146.1\|WP_032434232.1\|4490197_4492555_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP025146.1\|WP_002888353.1\|4489326_4490022_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP025146.1\|WP_004192048.1\|4498803_4500429_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP025146.1\|WP_002888324.1\|4506901_4507723_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP025146.1\|WP_002888348.1\|4495661_4496321_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP025146.1\|WP_002888345.1\|4497114_4498479_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP025146.1\|WP_002888320.1\|4509210_4509690_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP025146.1\|WP_004147026.1\|4502220_4504569_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP025146.1\|WP_002888373.1\|4483887_4484655_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP025146.1\|WP_002888329.1\|4504623_4505910_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP025146.1\|WP_032434230.1\|4485966_4487676_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP025146.1\|WP_004177430.1\|4505915_4506905_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP025146.1\|WP_023325085.1\|4492742_4495649_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP025146.1\|WP_004182906.1\|4500418_4501117_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP025146.1\|WP_004145972.1\|4484783_4485629_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP025146.1\|WP_002888321.1\|4508107_4508956_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208

Protein	Function_ID	Function_description	E-value
NZ_CP025146.1\|WP_002888323.1\|4507725_4508103_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP025146.1\|WP_004177424.1\|4487686_4489189_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP025146.1\|WP_002888347.1\|4496395_4496935_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP025146.1\|WP_002888332.1\|4501149_4501977_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP025146.1\|WP_032434232.1\|4490197_4492555_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP025146.1\|WP_002888353.1\|4489326_4490022_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP025146.1\|WP_004192048.1\|4498803_4500429_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	7.63459e-173
NZ_CP025146.1\|WP_002888324.1\|4506901_4507723_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP025146.1\|WP_002888348.1\|4495661_4496321_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP025146.1\|WP_002888345.1\|4497114_4498479_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP025146.1\|WP_002888320.1\|4509210_4509690_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP025146.1\|WP_004147026.1\|4502220_4504569_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP025146.1\|WP_002888373.1\|4483887_4484655_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP025146.1\|WP_002888329.1\|4504623_4505910_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP025146.1\|WP_032434230.1\|4485966_4487676_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP025146.1\|WP_004177430.1\|4505915_4506905_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP025146.1\|WP_023325085.1\|4492742_4495649_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP025146.1\|WP_004182906.1\|4500418_4501117_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.65624e-65
NZ_CP025146.1\|WP_004145972.1\|4484783_4485629_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP025146.1\|WP_002888321.1\|4508107_4508956_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0

>NZ_CP025146.1|WP_002888345.1|4497114_4498479_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP025146.1|WP_002888347.1|4496395_4496935_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP025146.1|WP_002888348.1|4495661_4496321_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP025146.1|WP_023325085.1|4492742_4495649_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP025146.1|WP_032434232.1|4490197_4492555_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQEFSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP025146.1|WP_002888353.1|4489326_4490022_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP025146.1|WP_004177424.1|4487686_4489189_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP025146.1|WP_032434230.1|4485966_4487676_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAHAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP025146.1|WP_004145972.1|4484783_4485629_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP025146.1|WP_002888373.1|4483887_4484655_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP025146.1|WP_004192048.1|4498803_4500429_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP025146.1|WP_004182906.1|4500418_4501117_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSGREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP025146.1|WP_002888332.1|4501149_4501977_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP025146.1|WP_004147026.1|4502220_4504569_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP025146.1|WP_002888329.1|4504623_4505910_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP025146.1|WP_004177430.1|4505915_4506905_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVALNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP025146.1|WP_002888324.1|4506901_4507723_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP025146.1|WP_002888323.1|4507725_4508103_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP025146.1|WP_002888321.1|4508107_4508956_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP025146.1|WP_002888320.1|4509210_4509690_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

114948 : 139707

Escherichia_phage(23.08%)

integrase,transposase,tRNA

attL 130847:130864|attR 142356:142373

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032434432.1\|114948_115638_-\|tRNA	tRNA (guanosine(18)-2'-O)-methyltransferase TrmH	NA	NA	NA	NA
WP_004150214.1\|115642_117763_-	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	A0A291L9W9	Bordetella_phage	4.8e-10	34.5
WP_000135058.1\|117781_118057_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_002922664.1\|118111_118735_-	guanylate kinase	K4JYM5	Abalone_herpesvirus	1.7e-19	35.0
WP_032434430.1\|118993_120670_+	NAD-dependent DNA ligase LigB	F8SJM3	Pseudomonas_phage	1.3e-23	24.0
WP_002922654.1\|120675_121293_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_032434427.1\|121568_122819_+	chloride channel protein	NA	NA	NA	NA
WP_032434425.1\|122874_123933_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.4e-18	33.5
WP_000608644.1\|124452_125715_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000239590.1\|125970_126846_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001393253.1\|126892_127225_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_001067855.1\|130103_130808_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
130847:130864	attL	NA	NA	NA	NA
WP_001288432.1\|131126_132560_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_085955172.1\|132801_134009_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_001389365.1\|135420_136185_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001144737.1\|136327_136594_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_004201280.1\|136814_137288_-	trimethoprim-resistant dihydrofolate reductase DfrA14	A0A140HLG8	Bacillus_phage	5.3e-18	33.8
WP_101169226.1\|137443_138457_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	6.6e-66	43.3
WP_001067855.1\|139002_139707_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
142356:142373	attR	NA	NA	NA	NA

DBSCAN-SWA_2

494283 : 527720

uncultured_Caudovirales_phage(73.33%)

tail,head,tRNA,portal,protease,integrase,capsid,terminase

attL 512070:512087|attR 528065:528082

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004150007.1\|494283_495231_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_004150006.1\|495245_495755_-	peptide deformylase	E3SLL2	Synechococcus_phage	4.4e-18	39.5
WP_032434585.1\|495883_497008_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|496979_497453_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|497479_498022_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|498026_498599_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|498602_499421_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|499417_499675_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|499650_500205_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|506179_506401_-	membrane protein	NA	NA	NA	NA
WP_004144975.1\|506693_509804_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_004144974.1\|509816_510956_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_016947472.1\|511334_511988_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
512070:512087	attL	NA	NA	NA	NA
WP_004150971.1\|512260_513487_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|513579_514521_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|514702_514987_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|514997_515777_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_106918304.1\|516228_516498_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|516490_516679_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|516671_516986_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|516982_517351_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|517347_517713_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|517712_519848_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|520190_520526_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|520574_521087_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|521350_522517_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|522568_523129_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|523130_524372_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|524368_524704_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|524700_525000_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|524999_525443_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_000113647.1\|525718_526075_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|526058_527720_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
528065:528082	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1284484 : 1331952

Salmonella_phage(20.41%)

tail,holin,integrase,coat,terminase

attL 1284374:1284388|attR 1293687:1293701

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1284374:1284388	attL	NA	NA	NA	NA
WP_023301229.1\|1284484_1285714_+\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	1.3e-238	96.3
WP_023301228.1\|1285691_1285967_-	excisionase Xis	H6WRW8	Salmonella_phage	9.2e-31	72.7
WP_071557557.1\|1286005_1286245_-	DUF4060 family protein	M9P0E0	Enterobacteria_phage	3.2e-24	71.8
WP_101134779.1\|1286252_1286561_-	hypothetical protein	I6PD68	Cronobacter_phage	9.3e-24	55.9
WP_101134887.1\|1286557_1287268_-	hypothetical protein	Q71T76	Escherichia_phage	6.0e-74	62.8
WP_101134780.1\|1287311_1288400_-	recombinase RecT	H6WRX0	Salmonella_phage	1.4e-106	56.2
WP_101134781.1\|1288413_1291515_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.2e-296	58.2
WP_016946289.1\|1291652_1291808_-	DNA breaking-rejoining protein	H6WRX3	Salmonella_phage	2.6e-14	74.5
WP_004179600.1\|1291816_1292008_-	YebW family protein	NA	NA	NA	NA
WP_101134782.1\|1292492_1292696_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.8e-20	73.1
WP_032438209.1\|1292724_1293135_-	hypothetical protein	NA	NA	NA	NA
WP_101134783.1\|1293261_1293645_-	helix-turn-helix domain-containing protein	K7PHG0	Enterobacteria_phage	2.0e-52	83.5
WP_023282398.1\|1293743_1293962_+	hypothetical protein	K7PKS2	Enterobacteria_phage	8.9e-21	64.8
1293687:1293701	attR	NA	NA	NA	NA
WP_101134784.1\|1293964_1294501_+	hypothetical protein	K7PJT7	Enterobacteria_phage	7.2e-64	70.9
WP_071785976.1\|1294588_1294777_+	hypothetical protein	NA	NA	NA	NA
WP_064179420.1\|1294791_1295700_+	hypothetical protein	V5URT9	Shigella_phage	1.7e-89	54.1
WP_023286279.1\|1295702_1296452_+	ATP-binding protein	H6WRX8	Salmonella_phage	2.2e-119	83.1
WP_023286280.1\|1296459_1296795_+	DUF977 family protein	H6WRX9	Salmonella_phage	5.8e-11	43.0
WP_101134785.1\|1296787_1297573_+	hypothetical protein	C7BGF1	Burkholderia_phage	1.6e-64	53.3
WP_101134786.1\|1297700_1298264_+	hypothetical protein	NA	NA	NA	NA
WP_101134787.1\|1298260_1298905_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	1.8e-109	78.9
WP_101134788.1\|1298901_1299333_+	ead/Ea22-like family protein	A0A077SLK5	Escherichia_phage	2.2e-10	47.2
WP_101134789.1\|1299505_1300402_+	DUF551 domain-containing protein	R9TQX3	Aeromonas_phage	2.2e-28	91.4
WP_040241897.1\|1300680_1300908_+	hypothetical protein	NA	NA	NA	NA
WP_004184503.1\|1301283_1301517_+	DinI-like family protein	K7PM44	Enterobacteria_phage	2.9e-25	68.8
WP_071557491.1\|1301621_1301870_+	hypothetical protein	K7PHG9	Enterobacteria_phage	5.0e-28	67.9
WP_101134790.1\|1301904_1302501_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.3e-90	80.1
WP_004892208.1\|1302709_1303006_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.2e-36	72.9
WP_023282412.1\|1303002_1303359_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.5e-41	64.1
WP_023287514.1\|1303474_1304296_+	antitermination protein	K7PKS8	Enterobacteria_phage	1.1e-98	67.5
WP_024940884.1\|1304551_1304851_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-47	100.0
WP_064179041.1\|1304847_1305387_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	5.7e-101	98.3
WP_023313049.1\|1305383_1305731_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.2e-40	81.7
WP_101134792.1\|1305727_1306003_+	hypothetical protein	G8C7W1	Escherichia_phage	5.2e-10	42.7
WP_072071795.1\|1306141_1306558_+	hypothetical protein	NA	NA	NA	NA
WP_073545918.1\|1306882_1307119_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.8e-17	62.8
WP_101134793.1\|1307369_1308374_+\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.3e-34	43.3
WP_064179047.1\|1308351_1309656_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.7e-146	60.0
WP_064179048.1\|1309660_1311085_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	2.9e-192	70.9
WP_101134794.1\|1311068_1312181_+	hypothetical protein	I6PD76	Cronobacter_phage	5.3e-109	53.6
WP_101134795.1\|1312284_1313049_+	hypothetical protein	G8C7P6	Escherichia_phage	8.7e-79	61.8
WP_048997557.1\|1313136_1314273_+\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	1.3e-155	74.6
WP_101134796.1\|1314322_1314607_+	hypothetical protein	NA	NA	NA	NA
WP_048271645.1\|1314610_1315021_+	hypothetical protein	A0A0H5AUF0	Pseudomonas_phage	6.6e-09	38.2
WP_065520084.1\|1315022_1315406_+	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	6.0e-20	44.4
WP_008807839.1\|1315407_1315959_+	hypothetical protein	G8C7Q1	Escherichia_phage	7.8e-29	39.9
WP_004146196.1\|1315955_1316348_+	hypothetical protein	M4SMU9	Cyanophage	7.3e-05	30.9
WP_101134797.1\|1316371_1317544_+	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	2.1e-23	26.6
WP_043906941.1\|1317598_1318081_+	hypothetical protein	NA	NA	NA	NA
WP_157829711.1\|1318218_1318416_+	hypothetical protein	NA	NA	NA	NA
WP_043906942.1\|1318592_1319123_+	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	6.1e-63	68.4
WP_050486020.1\|1319204_1319702_+	hypothetical protein	NA	NA	NA	NA
WP_029602982.1\|1319747_1320110_+	membrane protein	S4TR42	Salmonella_phage	2.3e-05	72.4
WP_101134798.1\|1320205_1323775_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	1.1e-83	31.4
WP_023313121.1\|1323774_1324248_+	hypothetical protein	A0A286S298	Klebsiella_phage	8.6e-61	68.6
WP_101134799.1\|1324234_1324717_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.3e-83	97.5
WP_017880229.1\|1324726_1325107_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	4.6e-73	100.0
WP_101134800.1\|1325103_1328172_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.6
WP_101134803.1\|1330857_1331952_+	hypothetical protein	A0A248XD67	Klebsiella_phage	3.0e-181	88.7

DBSCAN-SWA_4

1523234 : 1620729

Escherichia_phage(20.83%)

tail,head,tRNA,portal,protease,holin,plate,integrase,capsid,terminase

attL 1558443:1558467|attR 1597976:1598000

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101134808.1\|1523234_1524584_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_025368033.1\|1524580_1525270_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_032434868.1\|1525269_1526946_+	OmpA family protein	NA	NA	NA	NA
WP_025368035.1\|1526948_1527440_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_107318634.1\|1527670_1527835_+	hypothetical protein	NA	NA	NA	NA
WP_032434870.1\|1527860_1530218_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_071994657.1\|1530227_1530770_+	DUF3828 domain-containing protein	NA	NA	NA	NA
WP_032425140.1\|1530843_1531314_+	DUF3828 domain-containing protein	NA	NA	NA	NA
WP_077254137.1\|1531656_1534059_+	glycoside hydrolase family 104 protein	NA	NA	NA	NA
WP_032434872.1\|1534055_1534499_+	hypothetical protein	NA	NA	NA	NA
WP_071886200.1\|1534659_1535040_+	DUF4087 domain-containing protein	NA	NA	NA	NA
WP_123618670.1\|1535511_1535940_+	hypothetical protein	NA	NA	NA	NA
WP_025368039.1\|1536156_1536456_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_032435675.1\|1536518_1536782_+	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	1.2e-06	50.0
WP_032425487.1\|1536784_1537993_+	membrane protein	NA	NA	NA	NA
WP_032434874.1\|1537985_1541357_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_153582916.1\|1541359_1541509_+	hypothetical protein	NA	NA	NA	NA
WP_032434876.1\|1541849_1543457_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_025368043.1\|1543490_1545260_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_032425136.1\|1545223_1546306_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_032425135.1\|1546341_1546866_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_101134809.1\|1546870_1549192_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.7e-14	29.0
WP_050484908.1\|1549188_1549692_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.5e-18	40.0
WP_023317120.1\|1549685_1550030_+	hypothetical protein	NA	NA	NA	NA
WP_086472102.1\|1550062_1550800_+	hypothetical protein	NA	NA	NA	NA
WP_049107563.1\|1551042_1551525_+	hypothetical protein	NA	NA	NA	NA
WP_032434878.1\|1553408_1554293_+	glycine zipper family protein	NA	NA	NA	NA
WP_050598595.1\|1554282_1554840_+	hypothetical protein	NA	NA	NA	NA
WP_071838925.1\|1555347_1555746_+	hypothetical protein	NA	NA	NA	NA
WP_123618669.1\|1556534_1556984_+	hypothetical protein	NA	NA	NA	NA
WP_050598596.1\|1556980_1557514_+	hypothetical protein	NA	NA	NA	NA
1558443:1558467	attL	NA	NA	NA	NA
WP_032434882.1\|1558661_1559831_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	1.9e-202	86.1
WP_123618668.1\|1559935_1560778_+	hypothetical protein	NA	NA	NA	NA
WP_077254126.1\|1560879_1561080_-	hypothetical protein	G3CFG7	Escherichia_phage	1.8e-12	60.0
WP_004864289.1\|1561887_1562403_-	hypothetical protein	A0A0P0ZBM8	Stx2-converting_phage	2.9e-70	76.4
WP_021314787.1\|1562778_1563855_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	2.8e-147	74.4
WP_032434886.1\|1563982_1564768_-	hypothetical protein	A4JX52	Burkholderia_virus	2.9e-61	50.6
WP_024623196.1\|1564767_1565067_-	hypothetical protein	K7PJS4	Enterobacterial_phage	1.1e-13	48.6
WP_000690183.1\|1565695_1566391_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	2.7e-87	71.3
WP_001191665.1\|1566488_1566731_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
WP_101134810.1\|1566765_1567227_+	hypothetical protein	K7PJS5	Enterobacterial_phage	2.3e-58	89.7
WP_001208720.1\|1567464_1567644_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
WP_017880208.1\|1567633_1568587_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	6.1e-90	69.0
WP_101134811.1\|1568583_1569393_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	5.5e-108	68.5
WP_000779146.1\|1569402_1569780_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_032434890.1\|1569792_1570773_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.6e-136	67.5
WP_004899672.1\|1570786_1571365_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	7.6e-51	57.2
WP_032412064.1\|1571584_1572010_+	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	1.9e-59	83.7
WP_032434891.1\|1572006_1572162_+	DUF3927 domain-containing protein	A0A0A0YRI9	Escherichia_phage	2.5e-09	68.8
WP_017145563.1\|1572660_1573056_+	membrane protein	K7PHB9	Enterobacterial_phage	2.6e-63	98.5
WP_019705280.1\|1573042_1573324_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.9e-37	80.6
WP_032434894.1\|1573323_1573953_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	1.2e-105	90.9
WP_032434896.1\|1573960_1574236_+	hypothetical protein	G8C7W1	Escherichia_phage	1.9e-23	66.3
WP_032434899.1\|1574437_1575097_-	hypothetical protein	NA	NA	NA	NA
WP_032434901.1\|1575296_1575647_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	3.4e-46	73.7
WP_032434902.1\|1575805_1576303_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	2.5e-63	72.0
WP_000246643.1\|1576306_1578058_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	6.7e-252	72.2
WP_032434905.1\|1578205_1579432_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	3.2e-208	85.3
WP_032434907.1\|1579424_1580024_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	83.0
WP_004104235.1\|1580033_1581272_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	6.8e-158	69.2
WP_023316722.1\|1581349_1581667_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	4.8e-23	52.0
WP_031592512.1\|1581675_1582014_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.3e-38	67.9
WP_019705270.1\|1582010_1582460_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
WP_023302599.1\|1582456_1582804_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
WP_032412035.1\|1582860_1583565_+	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	9.5e-80	66.5
WP_032434909.1\|1583595_1584000_+\|tail	phage tail protein	Q9MCS5	Enterobacteria_phage	1.9e-32	56.2
WP_016530183.1\|1584002_1584308_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_016530182.1\|1584381_1584615_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_032434911.1\|1584676_1588063_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	4.0e-301	57.5
WP_004884312.1\|1588084_1588558_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.1e-55	62.7
WP_023302606.1\|1588544_1589021_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	5.3e-50	64.6
WP_032434913.1\|1589033_1589414_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.0e-60	83.3
WP_032434915.1\|1589410_1592488_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	62.2
WP_032434917.1\|1595172_1596267_+	hypothetical protein	A0A248XD67	Klebsiella_phage	1.4e-178	86.5
WP_032434919.1\|1596301_1597390_-	acyltransferase	C6ZR20	Salmonella_phage	1.8e-05	27.2
WP_004149224.1\|1598088_1599018_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	6.7e-134	81.4
1597976:1598000	attR	NA	NA	NA	NA
WP_002913362.1\|1599307_1600069_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_004149222.1\|1600130_1601459_-	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_002913359.1\|1601826_1602111_+	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_032434923.1\|1602270_1603581_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_032434925.1\|1603580_1605725_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_002913355.1\|1605934_1606420_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_002913348.1\|1606440_1606992_-	endonuclease SmrB	NA	NA	NA	NA
WP_002913346.1\|1607159_1608092_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_002913342.1\|1608133_1609219_+	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-89	46.6
WP_004174960.1\|1609221_1610046_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_002913340.1\|1610045_1610855_+	TSUP family transporter	NA	NA	NA	NA
WP_002913339.1\|1610854_1611403_+	elongation factor P hydroxylase	NA	NA	NA	NA
WP_002913338.1\|1611434_1611716_+	YfcL family protein	NA	NA	NA	NA
WP_032435686.1\|1611777_1613766_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_002913291.1\|1613924_1615145_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_004149211.1\|1615354_1616530_+	MFS transporter	NA	NA	NA	NA
WP_002913228.1\|1617703_1618840_+	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	1.6e-20	27.8
WP_002913227.1\|1618903_1619917_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_015958766.1\|1619916_1620729_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_5

1820427 : 1827332

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|1820427_1821291_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004899467.1\|1821301_1822075_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_002912636.1\|1822315_1823209_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1823454_1824816_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1825134_1825857_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_032434977.1\|1825853_1827332_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_6

1972245 : 2025071

Enterobacteria_phage(25.0%)

head,tRNA,holin,integrase,terminase

attL 1978641:1978663|attR 2025610:2025632

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151452.1\|1972245_1973979_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.4e-87	33.8
WP_002911491.1\|1974214_1974784_+	VOC family protein	NA	NA	NA	NA
WP_002911488.1\|1974860_1975604_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_032435025.1\|1975685_1976690_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_002911486.1\|1976686_1977430_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.0
WP_002911484.1\|1977469_1977865_-	membrane protein	NA	NA	NA	NA
WP_096991418.1\|1977917_1978691_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.1e-60	82.7
1978641:1978663	attL	NA	NA	NA	NA
WP_101134814.1\|1978693_1979953_-\|integrase	site-specific integrase	A0A286S1S8	Klebsiella_phage	3.0e-225	90.4
WP_023283988.1\|1979995_1980241_-	excisionase family protein	A0A286S2A4	Klebsiella_phage	1.4e-35	92.1
WP_101134815.1\|1980244_1980439_-	conjugal transfer protein TraR	A0A0K2FI84	Escherichia_phage	2.6e-11	53.6
WP_101134816.1\|1980435_1980942_-	HNH endonuclease	A0A1W6DY33	Salmonella_phage	3.5e-36	43.9
WP_101134817.1\|1981157_1981685_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	4.9e-57	61.6
WP_072044372.1\|1981681_1981840_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	1.9e-09	58.8
WP_049186040.1\|1981836_1982517_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	4.6e-124	93.4
WP_101134818.1\|1982513_1983359_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	9.0e-69	59.2
WP_085841924.1\|1983374_1983659_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	4.4e-28	60.6
WP_019725103.1\|1983747_1983942_-	hypothetical protein	NA	NA	NA	NA
WP_101134819.1\|1984590_1985427_-	hypothetical protein	A0A0R6PIN1	Moraxella_phage	2.1e-25	29.5
WP_004197930.1\|1985389_1985569_-	hypothetical protein	NA	NA	NA	NA
WP_101134820.1\|1985690_1986389_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.0e-106	83.2
WP_004201115.1\|1986500_1986728_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004141720.1\|1986767_1987088_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	3.8e-36	68.9
WP_101134821.1\|1987416_1988277_+	replication protein	K7PGT1	Enterobacteria_phage	3.9e-59	52.2
WP_101134822.1\|1988273_1989122_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	3.0e-88	60.1
WP_004151295.1\|1989118_1989412_+	protein ren	O48423	Enterobacteria_phage	3.3e-26	65.6
WP_101134823.1\|1989408_1989954_+	hypothetical protein	R9TME7	Aeromonas_phage	5.7e-08	40.2
WP_101134824.1\|1989950_1990700_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_101134889.1\|1991795_1992011_+	hypothetical protein	Q8HAA6	Salmonella_phage	5.0e-08	64.3
WP_101134825.1\|1992007_1992553_+	DUF551 domain-containing protein	S4TSR6	Salmonella_phage	1.0e-20	67.7
WP_016831923.1\|1992542_1992767_+	hypothetical protein	NA	NA	NA	NA
WP_101134826.1\|1993018_1993474_+	hypothetical protein	K7P7B8	Enterobacteria_phage	3.4e-54	68.9
WP_023342724.1\|1993473_1993644_+	hypothetical protein	G8C7V4	Escherichia_phage	5.7e-15	73.2
WP_101134827.1\|1993636_1994275_+	hypothetical protein	H6WRY9	Salmonella_phage	3.4e-76	70.3
WP_101134828.1\|1994271_1994913_+	HNH endonuclease	A0A2H4JH74	uncultured_Caudovirales_phage	8.4e-35	40.7
WP_023342726.1\|1994909_1995050_+	YlcG family protein	NA	NA	NA	NA
WP_101134829.1\|1995046_1995736_+	antiterminator	I6PDF8	Cronobacter_phage	4.5e-58	53.2
WP_019704119.1\|1996581_1996806_+\|holin	holin	M9NZI9	Enterobacteria_phage	4.0e-32	91.9
WP_019704120.1\|1996783_1997278_+	lysozyme	M9P0E5	Enterobacteria_phage	1.7e-88	95.1
WP_020804394.1\|1997274_1997625_+	hypothetical protein	A0A0K2FIW3	Enterobacter_phage	5.8e-14	42.9
WP_065242184.1\|1998856_1999483_+	hypothetical protein	I6S676	Salmonella_phage	1.1e-103	84.9
WP_065242183.1\|1999513_1999981_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.5e-57	73.8
WP_065242182.1\|1999964_2001263_+\|terminase	PBSX family phage terminase large subunit	Q5G8Y7	Enterobacteria_phage	1.5e-240	94.1
WP_065242181.1\|2001275_2002745_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.9e-148	55.9
WP_065242180.1\|2002671_2003667_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	8.0e-117	70.2
WP_112113408.1\|2003713_2004016_+	hypothetical protein	NA	NA	NA	NA
WP_020803626.1\|2004087_2005473_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	6.9e-167	64.5
WP_004178846.1\|2005476_2005908_+	hypothetical protein	F1C5E0	Cronobacter_phage	1.4e-41	60.1
WP_004178847.1\|2005919_2007017_+	hypothetical protein	F1C5E1	Cronobacter_phage	4.2e-151	73.6
WP_020803627.1\|2007026_2007284_+	hypothetical protein	NA	NA	NA	NA
WP_040229589.1\|2007286_2007667_+	hypothetical protein	F1C5E2	Cronobacter_phage	1.2e-28	54.5
WP_032752624.1\|2007666_2007840_+	hypothetical protein	I6R0P9	Salmonella_phage	5.4e-13	54.4
WP_032425728.1\|2007839_2008202_+	hypothetical protein	A0A1B1W262	Salmonella_phage	3.1e-18	45.0
WP_020804116.1\|2008204_2008573_+	hypothetical protein	F1C5E3	Cronobacter_phage	4.7e-46	79.5
WP_020804115.1\|2008569_2008953_+	hypothetical protein	NA	NA	NA	NA
WP_065242179.1\|2009010_2009775_+	immunoglobulin domain-containing protein	G0ZNE6	Cronobacter_phage	4.2e-41	43.4
WP_065242178.1\|2009843_2010557_+	hypothetical protein	G0ZNE7	Cronobacter_phage	9.6e-64	55.1
WP_020804850.1\|2010775_2011531_+	KilA-N domain protein	K7PH30	Enterobacteria_phage	2.8e-61	50.0
WP_020804851.1\|2011533_2011788_+	hypothetical protein	K7PM89	Enterobacteria_phage	2.3e-20	72.3
WP_023328739.1\|2012208_2012529_+	hypothetical protein	NA	NA	NA	NA
WP_086556004.1\|2012580_2012898_-	hypothetical protein	NA	NA	NA	NA
WP_032426034.1\|2013320_2013734_+	hypothetical protein	NA	NA	NA	NA
WP_020804808.1\|2013793_2017159_+	tape measure protein	Q5G8W8	Enterobacteria_phage	0.0e+00	75.0
WP_032426035.1\|2017158_2017404_+	hypothetical protein	NA	NA	NA	NA
WP_087588165.1\|2017503_2017923_+	hypothetical protein	A0A2P1MXB5	Escherichia_phage	6.3e-31	47.8
WP_038421573.1\|2017922_2018393_+	hypothetical protein	R9TPR6	Aeromonas_phage	3.3e-28	41.0
WP_065242176.1\|2018389_2018785_+	hypothetical protein	F1C5F2	Cronobacter_phage	2.3e-35	54.0
WP_087588163.1\|2018771_2021249_+	MoaD/ThiS family protein	R9TR21	Aeromonas_phage	2.3e-197	47.0
WP_101134803.1\|2023976_2025071_+	hypothetical protein	A0A248XD67	Klebsiella_phage	3.0e-181	88.7
2025610:2025632	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2833161 : 2844048

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020805006.1\|2833161_2836269_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004176258.1\|2836323_2837589_+	MFS transporter	NA	NA	NA	NA
WP_020805010.1\|2837619_2838708_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.8e-210	99.7
WP_004176262.1\|2838794_2839055_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_004179754.1\|2839352_2840213_+	class A beta-lactamase SHV-28	A0A077SL40	Escherichia_phage	1.7e-155	99.3
WP_002210513.1\|2840233_2840995_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|2841255_2842158_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004190239.1\|2842169_2843435_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.5
WP_002210516.1\|2843427_2844048_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_8

3513490 : 3522964

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209699.1\|3513490_3515212_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3515256_3515958_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3516311_3516530_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3516660_3518940_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3518970_3519288_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3519613_3519835_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_025368306.1\|3519911_3521852_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	5.0e-38	41.0
WP_002896440.1\|3521848_3522964_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP025148

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8568

Bacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101134916.1\|121_745_+	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	7.4e-28	35.0
WP_003032875.1\|737_2213_+	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_004178091.1\|2463_2895_+	silver-binding protein SilE	NA	NA	NA	NA
WP_085955172.1\|4323_5530_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178088.1\|6570_8568_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9

DBSCAN-SWA_2

13877 : 27299

Macacine_betaherpesvirus(37.5%)

integrase,transposase

attL 3626:3642|attR 34688:34704

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3626:3642	attL	NA	NA	NA	NA
WP_004152067.1\|13877_14801_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.1e-175	98.4
WP_071527918.1\|14865_15177_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152065.1\|15203_16151_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_001515717.1\|17294_18035_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_004152063.1\|18751_19762_-	replication initiation protein	J9Q7H0	Salmonella_phage	8.8e-87	55.9
WP_000523813.1\|20513_21680_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.4e-224	97.7
WP_004152062.1\|21679_22651_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	4.1e-150	86.6
WP_004152715.1\|25602_26874_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	5.6e-155	63.7
WP_004178083.1\|26873_27299_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.3e-31	49.6
34688:34704	attR	NA	NA	NA	NA

DBSCAN-SWA_3

30835 : 31090

Pectobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023157779.1\|30835_31090_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	8.8e-12	50.0

DBSCAN-SWA_4

34227 : 38533

Thalassomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152645.1\|34227_34791_+	methyltransferase	A8HNV9	Thalassomonas_phage	1.3e-18	34.1
WP_004152644.1\|35566_36109_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	6.0e-50	76.7
WP_001568055.1\|36157_36406_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_023287107.1\|36475_38533_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.4e-21	25.2

DBSCAN-SWA_5

42817 : 46418

Klebsiella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152717.1\|42817_43174_+	hypothetical protein	A0A248SL90	Klebsiella_phage	2.6e-25	58.1
WP_004152718.1\|43234_43447_+	hypothetical protein	NA	NA	NA	NA
WP_004152719.1\|43457_43682_+	hypothetical protein	NA	NA	NA	NA
WP_004152720.1\|43762_44083_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	6.8e-09	39.5
WP_004152721.1\|44072_44351_+	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4
WP_023287139.1\|44351_44765_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023287138.1\|45596_46418_+	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	1.2e-44	40.1

DBSCAN-SWA_6

71624 : 121549

uncultured_Caudovirales_phage(35.0%)

integrase,transposase

attL 98767:98826|attR 113935:114311

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157831193.1\|71624_72548_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	3.6e-172	96.7
WP_023287125.1\|72670_73042_+	TraT complement resistance protein	NA	NA	NA	NA
WP_017900859.1\|73540_73924_+	hypothetical protein	NA	NA	NA	NA
WP_023287124.1\|74050_76360_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_023287123.1\|76359_81618_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_009309882.1\|81707_82433_+	type-F conjugative transfer system pilin acetylase TraX	NA	NA	NA	NA
WP_009309883.1\|82587_83184_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_009309884.1\|83203_83551_+	hypothetical protein	NA	NA	NA	NA
WP_009309885.1\|84021_84666_+	hypothetical protein	NA	NA	NA	NA
WP_009309886.1\|84721_85372_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_009309887.1\|85368_85680_+	hypothetical protein	K7PKY8	Enterobacterial_phage	2.1e-15	40.0
WP_001549890.1\|86176_86509_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004118521.1\|86505_87228_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.5e-96	73.0
WP_001549888.1\|87285_87714_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
WP_001549887.1\|87763_89047_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	74.6
WP_001549886.1\|89142_89496_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
WP_001549885.1\|89979_91458_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-198	74.0
WP_004118529.1\|91476_92304_+	universal stress protein	NA	NA	NA	NA
WP_001549953.1\|92375_93572_-	MFS transporter	NA	NA	NA	NA
WP_004118534.1\|94100_94475_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0
WP_011977829.1\|94749_95898_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.7e-123	65.9
WP_004118538.1\|96251_96584_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_001067855.1\|96846_97551_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|97856_98561_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
98767:98826	attL	NA	NA	NA	NA
WP_101169254.1\|99399_101115_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004152392.1\|101224_104254_+\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004199214.1\|104360_105386_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152394.1\|105382_106162_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199234.1\|106293_107175_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_004152397.1\|107424_108744_-\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004153729.1\|109172_110000_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-20	37.6
WP_004152695.1\|109996_110860_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152694.1\|110868_111696_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152693.1\|111704_112715_+	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152692.1\|112708_113578_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000019473.1\|114786_115767_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
113935:114311	attR	NA	NA	NA	NA
WP_004118209.1\|116968_117232_-\|transposase	transposase	NA	NA	NA	NA
WP_004118208.1\|117246_117510_+	hypothetical protein	NA	NA	NA	NA
WP_004152118.1\|117753_118035_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004152117.1\|118069_118639_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152116.1\|118753_121549_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0

DBSCAN-SWA_7

130994 : 135301

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152101.1\|130994_131345_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152100.1\|131394_131757_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152099.1\|131774_133526_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152098.1\|133573_134863_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152097.1\|134875_135301_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9

DBSCAN-SWA_8

138758 : 139469

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085903505.1\|138758_139469_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0

DBSCAN-SWA_9

143987 : 146065

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152084.1\|143987_145388_-	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_001188930.1\|145384_146065_-	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4

DBSCAN-SWA_10

151158 : 158415

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118669.1\|151158_151896_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_000843497.1\|151929_152127_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004098955.1\|152167_154615_-	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000758228.1\|154741_155182_-	hypothetical protein	NA	NA	NA	NA
WP_004098958.1\|155268_158415_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP025147

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP025146

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP025148

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection