CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015194	Shewanella sp. Pdp11 chromosome, complete genome	3 crisprs	PrimPol,csa3,RT,cas3,PD-DExK,WYL,DinG,DEDDh	0	1	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015194_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015194_1

1578313-1578414

Unclear

Consensus_repeat	Method
AATCAACAGATCAAGCATGGATGTGGAATTAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015194_1

>merge|NZ_CP015194|1|1578313-1578414|CRISPRCasFinder
AATCAACAGATCAAGCATGGATGTGGAATTAACTCTGAAGATTTAAAAGTTGCTGACATACCCGAGGGAATCAACAGATCAAGCATGGATGTGGAATTAACT

>NZ_CP015194|1|1|1578313-1578414|CRISPRCasFinder
AATCAACAGATCAAGCATGGATGTGGAATTAACT	CTGAAGATTTAAAAGTTGCTGACATACCCGAGGG
AATCAACAGATCAAGCATGGATGTGGAATTAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015194.1\|WP_006082967.1\|1574726_1575170_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP015194.1\|WP_106649548.1\|1581638_1583234_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP015194.1\|WP_106649549.1\|1583285_1583696_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP015194.1\|WP_106649544.1\|1577710_1578223_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP015194.1\|WP_106649547.1\|1581062_1581569_+\|TAT-leader-containing-periplasmic-protein	unknown	unknown	unknown
NZ_CP015194.1\|WP_106649540.1\|1571593_1572082_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP015194.1\|WP_106649550.1\|1583773_1584235_-\|TIGR02444-family-protein	unknown	unknown	gnl\|CDD\|378196
NZ_CP015194.1\|WP_106649546.1\|1579830_1580874_-\|hydrolase	unknown	unknown	gnl\|CDD\|182883
NZ_CP015194.1\|WP_106649545.1\|1579601_1579847_-\|YheU-family-protein	unknown	unknown	gnl\|CDD\|377710
NZ_CP015194.1\|WP_011847692.1\|1578623_1579511_-\|phosphoribulokinase	unknown	unknown	gnl\|CDD\|237970
NZ_CP015194.1\|WP_106651763.1\|1572081_1573563_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
NZ_CP015194.1\|WP_106649539.1\|1570742_1571537_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP015194.1\|WP_106649538.1\|1569869_1570715_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP015194.1\|WP_106649543.1\|1576215_1577508_+\|aminopeptidase-PepB	unknown	unknown	gnl\|CDD\|235330
NZ_CP015194.1\|WP_106649551.1\|1584289_1586203_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236729
NZ_CP015194.1\|WP_106649552.1\|1587552_1587819_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015194.1\|WP_106649541.1\|1573642_1574557_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NZ_CP015194.1\|WP_106649537.1\|1568934_1569462_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015194.1\|WP_012088350.1\|1586456_1586660_+\|YheV-family-putative-metal-binding-protein	unknown	unknown	gnl\|CDD\|131496
NZ_CP015194.1\|WP_106649542.1\|1575333_1576038_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733

Protein	Function_ID	Function_description	E-value
NZ_CP015194.1\|WP_006082967.1\|1574726_1575170_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	1.27843e-78
NZ_CP015194.1\|WP_106649548.1\|1581638_1583234_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	9.03304e-56
NZ_CP015194.1\|WP_106649549.1\|1583285_1583696_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	3.38347e-36
NZ_CP015194.1\|WP_106649544.1\|1577710_1578223_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.52556e-12
NZ_CP015194.1\|WP_106649540.1\|1571593_1572082_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	4.27032e-62
NZ_CP015194.1\|WP_106649550.1\|1583773_1584235_-\|TIGR02444-family-protein	gnl\|CDD\|378196	pfam09523, DUF2390, Protein of unknown function (DUF2390). Members of this family are bacterial hypothetical proteins, about 160 amino acids in length, found in various proteobacteria, including members of the genera Pseudomonas and Vibrio. The C-terminal region is poorly conserved and is not included in the model.	4.63243e-26
NZ_CP015194.1\|WP_106649546.1\|1579830_1580874_-\|hydrolase	gnl\|CDD\|182883	PRK10985, PRK10985, putative hydrolase; Provisional.	5.625e-135
NZ_CP015194.1\|WP_106649545.1\|1579601_1579847_-\|YheU-family-protein	gnl\|CDD\|377710	pfam06794, UPF0270, Uncharacterized protein family (UPF0270).	6.45199e-17
NZ_CP015194.1\|WP_011847692.1\|1578623_1579511_-\|phosphoribulokinase	gnl\|CDD\|237970	PRK15453, PRK15453, phosphoribulokinase; Provisional.	0
NZ_CP015194.1\|WP_106649539.1\|1570742_1571537_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	7.4522e-171
NZ_CP015194.1\|WP_106649538.1\|1569869_1570715_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	1.66969e-165
NZ_CP015194.1\|WP_106649543.1\|1576215_1577508_+\|aminopeptidase-PepB	gnl\|CDD\|235330	PRK05015, PRK05015, aminopeptidase B; Provisional.	0
NZ_CP015194.1\|WP_106649551.1\|1584289_1586203_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NZ_CP015194.1\|WP_106649541.1\|1573642_1574557_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	7.10079e-156
NZ_CP015194.1\|WP_106649542.1\|1575333_1576038_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	3.84599e-146
NZ_CP015194.1\|WP_012088350.1\|1586456_1586660_+\|YheV-family-putative-metal-binding-protein	gnl\|CDD\|131496	TIGR02443, Hypothetical_protein_yheV., conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.	8.81043e-24
NZ_CP015194.1\|WP_106651763.1\|1572081_1573563_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	0

>NZ_CP015194.1|WP_106649544.1|1577710_1578223_+|GNAT-family-N-acetyltransferase
MMITIRKATKADAQVCWDIRNAAINKGCAGFYDAGDLVIWTEGELTEQFSRIVDAHFYVAELSSDESQLKTVVGTAMLDEPYAQIEALFVSPDAMGLGVGKALLQFIEAMAFNQGIAQLRLESTLNAVDFYRHCGFGGEGLEEESIYCSPRGIALECRVMYKNLGRPLAC
>NZ_CP015194.1|WP_106649543.1|1576215_1577508_+|aminopeptidase-PepB
MSELKVTELMKVQLTKEVPAAHWGKADVTYTADGAQIHLAGGDELRQIQMAARKLRSQGISSVELAGQFWDLNSQWVFAQGFATAKPGYQIYWCGDESVQAELQRRLDVATFARQLINDTPENLSPVKLAQQAAKWLADVGGDKVSYRIIEGEALLEEQWIGIHAVGRGSERPPAMLELDFNPLAADAPVSVALVGKGITFDSGGYSIKASEGMLGMKCDMGGAATVTAALGLAIKSGLNKRVKLFLCCAENLISGRAYKLGDILTYKNGVTVEVVNTDAEGRLVLADGLQAASATGAPFIIDAATLTGAAVMAVGSNYNAIFSPQADVLQLAQQKATSVAERVWPLPLDPWHKEMCPSAYADTANSRAMKGGGAGGASNAAGFLWRFVSPEAKWLHVDLAGAFEDSASAMWGAGATTHGVLTISELIKG
>NZ_CP015194.1|WP_106649542.1|1575333_1576038_-|DNA/RNA-nuclease-SfsA
MEFTPPLQQGILLRRYKRFLADVQLSDGSEITLHCPNTGSMRNCLYPGETVWFSTSDNPKRKYAHTWELMTTPNAGLIGIHSGQANTLAEEAINKGIITELTGYDSLSREVKYGDENSRIDILLQGAQKPACYIEVKSCTLLEDGQGYFPDAVSLRGQKHLRELMHMVSQGHRAVLLFVVQHSDIFSVAPAAHIDPEYAKLLKIAVLAGVEVLAYRCEMSPTEIHLAQACDVRV
>NZ_CP015194.1|WP_006082967.1|1574726_1575170_-|RNA-polymerase-binding-protein-DksA
MPEGTKKLGVLAIAGVNPYQEKPGEEYMNAKQLGHFKTILEAWRNQLREEVDRTLSHMQDEAANFPDPVDRAAQEEEFSLELRARDRERKLIKKIEKTLQKIEEDDFGFCDSCGIEIGIRRLEARPTADQCIDCKTLAEIKEKQMAG
>NZ_CP015194.1|WP_106649541.1|1573642_1574557_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MSKPLHSDLSSQHYVGRFAPSPSGALHFGSLIAALGSYLRARSQQGKWLIRIEDIDPPREVKGAADDILRTLAAYGFEWDDVPLYQSQRTAAYQAQIDSLLAQDKAYFCQCSRKQIQAMGGVYDGRCHRLPQTQARNVVKSGAVRIVNTAQVQQFDDNLMGHICVDSHFAAEDFIIKRSDGLYAYQLAVVLDDAYQGVTEVVRGCDLIEASCRQLSLYQNFGLAAPQWLHLPLACLSKGFKLSKQNHAQAIDTLNPQASLNAALAFLGQQPVETQGSVAQMLAQAVGQFQLSTIPQQSEILIEP
>NZ_CP015194.1|WP_106651763.1|1572081_1573563_-|polynucleotide-adenylyltransferase-PcnB
MFRRISQFCKQLFEDAPKTTAPTPAQIEPTTPEQSSGALSLELVPRDAHTISRKQISENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRAVRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLFAPLFPQVAALLKDDPKGTTMKMVQAIMKSTDQRVNEDKPVTPSFFYAALLWYPLRQRAEDIAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFSTPAKDIWQLQLRFDRSQGTRAFKLMEHPKFRAAYDLLLLRGEVEAGNVAKSAAWWQQFVEADETERLAIARSGSKSPNRNRNATQRRRRPRAPNADGSAPTSTPKASGTPKAKAAE
>NZ_CP015194.1|WP_106649540.1|1571593_1572082_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MPRVYVALGANLDDPKAQLDNAVTALSALALGNSLLVSPYYHSTPMGDVVQPDYVNAVVSFDTDLEPLALLDALQHIENTQGRVRLERWGPRTLDLDLLLYGNENIDIPRLKVPHYGMKERSFVLVPLAAIAPNLILPCNTAIGSLIDTKMLAELQQLGIDH
>NZ_CP015194.1|WP_106649539.1|1570742_1571537_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSKITSSTLLKYKQEGRKFTALTAYDASFASAFDSEGVDVLLVGDSLGMVLQGHDDTLPVSTADIAYHTRCVRRGIERALLIADMPFMSYATPEQAMVNATELMQAGANMVKVEGGHWLLETVTKLTERGIPVCAHLGLTPQSVHVFGGFKVQGRDAENAQRILDEAKALEAAGAQLLVVECIPAPLATAITQALTIPVIGIGAGASTDGQILVMHDVLGISSGYIPRFSKNYLKQTGEIRSAVRAYIDEVAQGTFPGDEHTFN
>NZ_CP015194.1|WP_106649538.1|1569869_1570715_-|pantoate--beta-alanine-ligase
MITSAHIDDIRTQVRAWRAKGETVAFVPTMGNLHQGHITLVKEAASKCDHVVVSIFVNPMQFGQNEDLDAYPRTLAADSGALNAAGAELLFTPTPAVMYPKGLEQQTYVEVPGISDVLCGASRPGHFRGVATIVCKLFNIVQPDVALFGNKDYQQLLVIKTMVEDLSLPIEIIGIDTIREDSGLAMSSRNGYLTAAEKAAAPALKQAIDAMATGIKQGESFEQVTEQAKAKLVAAGFTPDYLEIRHAHTLEQAQHQDQALVILAAAYIGKARLIDNLRFDR
>NZ_CP015194.1|WP_106649537.1|1568934_1569462_-|hypothetical-protein
MVRLILTLICVILPSTVQANTIYKCRKDDKIVFSQTACPQEFSQHKIEYQLGITTEVDSDKRDIPVDPLQALLNRQTISKEKLLQLLDGEIYRLKQENSYFEILRTSELQKLERKRYWQNKEKSDPEYINEMDDINTRFNALTVSNNSAMQQLKDRKSQISTEVSPEESKEPEKH
>NZ_CP015194.1|WP_011847692.1|1578623_1579511_-|phosphoribulokinase
MSAKHPIIAVTGSSGAGTTTTTTAFSHIFRQLGINAAFVEGDSFHHFTRAEMEVMIRKSQAENRNLSYFGPEANNFARLEQCFRDYSTTGQGETRSYLHTFDEAVPFNQMPGTFTQWRPLPENTDMLYYEGLHGGVVTGDANVAQHVDLLIGMVPIVNLEWIQKIIRDTSERGHSREKVMGSIVRSMDDYIKHMTPQFSRTHINFQRVPTVDTSNPFSAKDIPSLDESFVVIRFRGINNVDFPYYLNMIQGSFMSRVNTLVVPGGKMSLAMELILTPLIKDLMEKRQQLNTPEAN
>NZ_CP015194.1|WP_106649545.1|1579601_1579847_-|YheU-family-protein
MLIPYEALLQLPKETLANLIREYLLSQVEDGSFASLDEQELAQAIVQCQQALKQGKLKLEYSEDDESFAIRSADQIAQQQD
>NZ_CP015194.1|WP_106649546.1|1579830_1580874_-|hydrolase
MPNSFMPPWWAKSPHVQTILPVFTKVAKPALQRQRLELPDGDFIDLDWQDVPQSGKPIVVIIHGLEGSAQSHYARRILQACKGQQLAAVVHHHRSCSGEANRLARSYHSGDTDDLQFSLSTLKSAYPQSPLLAVGYSLGGNVLTKYQGEYQDDSLLARAVVVSAPLQLSACAKRLENGFSKVYQSYLIKQLQQKISHKLNDPDLALSMPLSQLQVDRLNTFYDFDDKVTAPLHGFDGVDDYYTRASGLPFVSRITKPTLIMHAKDDPFMTDEVIPKTNQLSGYVEYELHPYGGHVGFIEGGTPWKPRFYLERRILHFLSGDQSVDSHSADPINGDNTIQGSTDAHSL
>NZ_CP015194.1|WP_106649547.1|1581062_1581569_+|TAT-leader-containing-periplasmic-protein
MKRRTFLMGAFAGTAALALGVNLYSPEFSVPEDSESKDYRLLFSVLLPVMLDGALPDVATHKLAAQNRTLDAIKQSITVLPDEQQTELFELLDMLENRLGLLVLTSSMTPLLMRSPAELTDMLETWRHSYFALLQTAYLGLRELVMASYYACPEHWSRLHYAKPELFN
>NZ_CP015194.1|WP_106649548.1|1581638_1583234_+|GMC-family-oxidoreductase
MAIIDPIVNGLNSGWLHTDASQLQANQQFEADVIIVGTGAGGGVAAEILTQAGLSVIMIEAGPLKSSSDFNMEERVAYPNLYQQAAAMKTADKAIGIFQGRAVGGSTTVNWTTSIRTPTEALAFWAQHKSVAGLNRESLDPWFEQMEQRLNIHEWNYEPNRNNAALKQGCINLGWEYTVIKRNVAGCWNTGYCGMGCPVNAKQSMLVTTIPSALEKGAQLISRAKVTKIEHHNGQVFALKAQALDVNLRPTDVELLFKAKHYILSAGAIHTPTILMRSQVPDPHKLLGKRTFLHPTLLSGGVFADSINGHSGAPQSIYSDEFVWKNDADGELGYKLEVPPVHPILIASKTLGYGASHAELMAQFNQLQVTIALIRDGYHPDSQGGEVHLTDKGFALDYPLTDAFWRAARRAFASMAELQFSAGALKVLPISDGMPYLSSWKDAKESIAQMSLAPLRTIVASAHVMGGCPFGEDEKLSMVNSYGQSHYLENLSVMDGSIFPTSLGANPQLSIYGITARNATALAQKLTDGKA
>NZ_CP015194.1|WP_106649549.1|1583285_1583696_+|GFA-family-protein
MSENILREGGCLCGAIRYQIEGEPFDADYCHCRSCQKSTGSAFGAWMDFKITQVIWLKGQVTEFASSELIRRGFCDKCGTSLTYRHLQYPDYSTLSIASLDDANQVQPKYHIYTESQLNWLVIEDNCQRYPQARSR
>NZ_CP015194.1|WP_106649550.1|1583773_1584235_-|TIGR02444-family-protein
MAVLTQFDSQLWQWCDMSYAQNKALCLELQNSCQVNVNLLLLAQYLDITMDVSGPQQYSTKQWQTLMSAVSGWDERFLMPYRKLRKLAKSSLNEQEYQQMLAVELMMERKAQRTILNKLNELSPSGQATNLVSYLSLFGLSDIDANEIGLIAP
>NZ_CP015194.1|WP_106649551.1|1584289_1586203_-|ABC-transporter-ATP-binding-protein
MISINQAQLIRGSKTLLDETSLTIYPGHKVGLVGANGTGKSSLLALILGHLSLDKGEFSLPSGWQIATVAQETPALDVSALEYVIDGDSEYRQLEALLHKAQEDNDGNAIALLHGKIDAIGGYAIHSRAGSLLAGLGFSEAEQSNPVKSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHLDLDTMYWLEGWIKSYQGTLILISHDRDFIDEIVDEIVHVENQKLNFYKGNYSAFERIRAERMSQQQVAFERQQKERAHMQSFVDRFRYKASKAKQAQSRLKALERMTELLPSQADSPFYMEFRAPEALPNPLIKMEQVAIGYGDKPILSKVHLNLVPGARIGLLGRNGAGKSTLIKLLSGQLSPMTGLYEPNPGVNIGYFAQHQIEFLRLDDTPMQHLVRLAPNAREQELRNFLGGFGFNGDMALSPVRPFSGGEKARLVLALLVWQRPNLLLLDEPTNHLDLEMRHALTMALQTFEGAMVVVSHDRHLLRLTCSDYYLVDQGEVRAFDGDLDDYHQWLLDAAKANSNQNSTSDEIKPAADKKQQKRLEAEIRQKVSPLKRKQTKLETEQQKLSERLAELEHLLADSELYDQDNKAKLTSVLTERTSLTQTLEDSEMQWLELQEEIDAMELEVMEQQ
>NZ_CP015194.1|WP_012088350.1|1586456_1586660_+|YheV-family-putative-metal-binding-protein
MTNTKIKKRFVAGAKCPKCSAKDSILLYKENGIETVECTECDYREQQTDEKVTEKATGAVIGVFKPD
>NZ_CP015194.1|WP_106649552.1|1587552_1587819_+|hypothetical-protein
MNEVAIIFVQNSHIIFIIWLISTLIATYIGVQRGFPFLAFINGIALGPLGLLFVLIQDNHNRKACQFCAEKILKEAKVCPHCQRDVNE

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Crispr_ID: NZ_CP015194_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015194_2

3567554-3567667

Orphan

Consensus_repeat	Method
GGAGGTTAATTACCATGCCATTAAGACTGGATGTCCATTTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015194_2

>merge|NZ_CP015194|2|3567554-3567667|CRISPRCasFinder
GGAGGTTAATTACCATGCCATTAAGACTGGATGTCCATTTTTCATTCCTAAATGCTTAACCAAGCATAGTTGGAGGTTAATTACCATGCCATTAAGACTGGATGTCCATTTTTC

>NZ_CP015194|2|2|3567554-3567667|CRISPRCasFinder
GGAGGTTAATTACCATGCCATTAAGACTGGATGTCCATTTTTC	ATTCCTAAATGCTTAACCAAGCATAGTT
GGAGGTTAATTACCATGCCATTAAGACTGGATGTCCATTTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015194.1\|WP_106650850.1\|3560305_3560929_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP015194.1\|WP_106650864.1\|3588666_3589338_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP015194.1\|WP_106650851.1\|3561062_3562487_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|377314
NZ_CP015194.1\|WP_106650859.1\|3573883_3576028_-\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NZ_CP015194.1\|WP_106650844.1\|3554771_3555566_-\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP015194.1\|WP_106650858.1\|3573292_3573742_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|182510
NZ_CP015194.1\|WP_106650863.1\|3587652_3588201_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354
NZ_CP015194.1\|WP_106650854.1\|3567952_3569602_-\|dipeptidase	unknown	unknown	gnl\|CDD\|235720
NZ_CP015194.1\|WP_106650861.1\|3578986_3579745_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP015194.1\|WP_106650855.1\|3570013_3572218_+\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NZ_CP015194.1\|WP_106650860.1\|3576735_3578781_+\|bifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/3'-nucleotidase	unknown	unknown	gnl\|CDD\|236506
NZ_CP015194.1\|WP_106650857.1\|3572695_3573175_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015194.1\|WP_106650843.1\|3552504_3552849_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015194.1\|WP_106650845.1\|3555823_3556738_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP015194.1\|WP_106650862.1\|3580091_3581130_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP015194.1\|WP_106650852.1\|3562595_3564335_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|181992
NZ_CP015194.1\|WP_106650853.1\|3566537_3567515_-\|transposase	unknown	unknown	unknown
NZ_CP015194.1\|WP_106650848.1\|3559372_3559957_-\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP015194.1\|WP_106650847.1\|3558210_3559251_+\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|273528
NZ_CP015194.1\|WP_106650846.1\|3556952_3558113_+\|homogentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|226039

Protein	Function_ID	Function_description	E-value
NZ_CP015194.1\|WP_106650858.1\|3573292_3573742_+\|acetyltransferase	gnl\|CDD\|182510	PRK10514, PRK10514, putative acetyltransferase; Provisional.	8.31946e-49
NZ_CP015194.1\|WP_106650864.1\|3588666_3589338_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	9.6898e-47
NZ_CP015194.1\|WP_106650851.1\|3561062_3562487_-\|N-acetyltransferase	gnl\|CDD\|377314	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition. FemAB_like is a family of both baterial and Viridiplantae proteins with responsibility for building interpeptide bridges in peptidoglycan. Such a function is feasible for bacteria but less likely for the plant members of this family. Perhaps the plant-members are using homologous proteins to recognize bacterial peptidoglcans as part of their innate immune system.	0
NZ_CP015194.1\|WP_106650859.1\|3573883_3576028_-\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NZ_CP015194.1\|WP_106650844.1\|3554771_3555566_-\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	5.85649e-84
NZ_CP015194.1\|WP_106650850.1\|3560305_3560929_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.35587e-36
NZ_CP015194.1\|WP_106650863.1\|3587652_3588201_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	7.08274e-108
NZ_CP015194.1\|WP_106650861.1\|3578986_3579745_+\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	7.60397e-37
NZ_CP015194.1\|WP_106650855.1\|3570013_3572218_+\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NZ_CP015194.1\|WP_106650860.1\|3576735_3578781_+\|bifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/3'-nucleotidase	gnl\|CDD\|236506	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase.	0
NZ_CP015194.1\|WP_106650854.1\|3567952_3569602_-\|dipeptidase	gnl\|CDD\|235720	PRK06156, PRK06156, dipeptidase.	0
NZ_CP015194.1\|WP_106650845.1\|3555823_3556738_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.18142e-32
NZ_CP015194.1\|WP_106650862.1\|3580091_3581130_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.12049e-27
NZ_CP015194.1\|WP_106650852.1\|3562595_3564335_+\|gamma-glutamyltransferase	gnl\|CDD\|181992	PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed.	0
NZ_CP015194.1\|WP_106650848.1\|3559372_3559957_-\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.36126e-96
NZ_CP015194.1\|WP_106650847.1\|3558210_3559251_+\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|273528	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see . In some bacterial species, this enzyme has been studied as a hemolysin. [Energy metabolism, Amino acids and amines].	2.30189e-149
NZ_CP015194.1\|WP_106650846.1\|3556952_3558113_+\|homogentisate-1,2-dioxygenase	gnl\|CDD\|226039	COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	4.65583e-64

>NZ_CP015194.1|WP_106650853.1|3566537_3567515_-|transposase
MPRPRRTQISVEDTPYYHCCSRVVRRAFLCGDDAYSGKNYDHRRAWVELLLFELEAVFAIDVAAFAVMSNHLHVVLRVDVDSANRWTDREVLEQWHKLFKGDGLTQKFAKGELVEAHEVHRLKHSIAIYRSRLCDISWFMRCLNEPIARQANQEDNCTGRFWEGRFKAQALLDEAAVLTCMAYVDLNPIRAQLADTPEQSDHTSIQLRIRAALKGEQPKNLLPFIGNERDNQPNGIAFLLSDYLELVDDTGRIIRSDKRGAISINSAKLLARLNIPHDNWLKLTTEFGKLFHGPVGTLQALTDYCEHLEKRRRHFAASCQHFHSN
>NZ_CP015194.1|WP_106650852.1|3562595_3564335_+|gamma-glutamyltransferase
MRPTRPFRPLILAIAMALPLLSSPSLLAEESSIFSQMATAQPVWAKHGMVASQETLASRTGVEILKQGGNAVDAAVAVAFSLAVTLPRAGNIGGGGFMLVHIAKENKTIAIDYREMAPSKAKKDIFLDENGDAVEKLSREHGLAVGVPGTVMGMSLALEKYGTMTLAQVTAPAIKMAQEGISVTPDLAQSLAGLKRRMSQWPTTAAIFYKADGSDFQVDDILKQPELAHSLSLIAEKGTKGFYEGETATKLINAVKDAGGIMTLDDLKNYKVVEREPVRGEYRGYEVVSMPPPSSGGVHIIEMLNVLQQFPIDKLGHNTAQTIHLMAETMKHAYSDRSEYLGDPDFYKVPVKALTSKDYAQKIASQIAMNKTTPSAEIKPGKLAPYESDQTTHFSVVDKWGNAVSNTYTLNFSYGSGLVAKGTGILLNNEMDDFSAKPGVPNGYGLVGGDANAVEGNKRPLSSMSPTIVMKDGKPFLVTGSPGGSRIITTTLQIIMNVIDHGLNIAEASNAARVHHQWLPDELRVESSLNRDTISLLEAKGHKVKVQPAMGSTQSIMVTEQGIFGASDPRHSGSEAIGY
>NZ_CP015194.1|WP_106650851.1|3561062_3562487_-|N-acetyltransferase
MRQLILAFASSISDISASAWNAVMGEANPFCRHEFLLALEQSHSACAATGWTPRHLCVFDVGDRLNDVVSTDKSLSPLPAGALISRQAAKHFNPLSLVAVMPLYQKSHSYGEYVFDWAWAQAYERHGLDYYPKWVNAIPFTPVQGQRMGIHPAFDSVEQLRVAQLLLLTLNRRLTSELFRSEPSALEKSDSFFDEPEFDQSVIDQPVVESDLDSSVQSAKELGDSPISSWHSLFVTPSQTPLFAGSPNSLLKRLGTQFHWHNRGYRDFDDFLAGFSSRKRKNILKERVQLQPFNLKFHFVEGEHITVSQWQTFIQCYQLTYLKRSGHRGYLTPEFFQQLGAQLAAQVLLLVVEDAKGEMVAGALYLKGENTQGQKCLYGRYWGTTVELDGLHFEACYYQGIQYCIEHGFQMFDAGAQGEHKVLRGFEPVEMYSYHNIAHLGFRAAIADFVEQEAQQMQQYMAQMRAVLPYKKEP
>NZ_CP015194.1|WP_106650850.1|3560305_3560929_+|LysE-family-translocator
MPDFALLAVFIPTFFFVSITPGMCMTLAMTLGMSIGVRRTLWMMLGELVGVALVATAAVMGVASIMLNYPEVFQIFKWIGGIYLGFIGVQMWRARGKMAILSDDDTNPRASNVTLISQGFITAIANPKGWAFMVSLLPPFINAERDVAPQLLALLSIIMVTEFTSMLAYASGGKSLRIFLSRGDNIRWLNRIAGSLMIGVGVWLAMS
>NZ_CP015194.1|WP_106650848.1|3559372_3559957_-|sugar-O-acetyltransferase
MLENKGIEVKQTEKQKMLAGQPYKAWDDELLAERMRAKYVCHQFNLAEPTQLDARMDHLRGLLDIQHCAHIEPIFFCDYGYNIHIGKQFYANHNLTILDVCSVSIGDNVMFGPHVMISTATHPIDPIARQTTEFGAPIQIGNNVWLGGNVSVLPGVTIGDNCVIGAGSVVNKSIPANCVAAGNPCKVIKPINVE
>NZ_CP015194.1|WP_106650847.1|3558210_3559251_+|4-hydroxyphenylpyruvate-dioxygenase
MASELNPLGLLGIEFTEFASPDTDFMHKVFIDFGFSLLKKAKNKDILYYKQNDINFLLNTEREGFSAKFAKSHGPAICSMGWRVEDAGFAYRVAVERGAKPADDANKDLPYPAIYGIGDSLIYFIDTFGADNNIYAADFEDLDEQVITQEKGFIEVDHLTNNVYKGTMEHWANFYKNIFGFTEVRYFDISGVQTALVSYALRSPDGSFCIPINEGKGSDKNQIDEYLKEYNGPGVQHLAFRSRDIVKSLDAMEGSSIQCLDIIPEYYDTIFEKLPQVTENRERIKHHQILVDGDDTGYLLQIFTKNLFGPIFIEIIQRKNNLGFGEGNFTALFESIERDQMRRGVL
>NZ_CP015194.1|WP_106650846.1|3556952_3558113_+|homogentisate-1,2-dioxygenase
MPFYVKQGQIPHKRHIAFEKENGELYREELFSTHGFSNIYSNKYHHNMPTKALEVAPYSLSHGANWEDSLVQNYKLDSRDADREGNFFSARNKIFYNNDLALYTAKVSADTDEFYRNAYADEVVFIHEGEGTLYSEYGTIKVQKWDYLVIPRGTTYQLKFNDYSNVRLFVIESFSMVEVPKHFRNEYGQLLESAPYCERDLRVPTLQDAVVERGAFPLVCKFGDKYQLTTLEWHPFDLVGWDGCVYPWAFNITEYAPKVGKIHLPPSDHLVFTAHNFVICNFVPRPYDFHPKSIPAPYYHNNIDSDEVLYYVDGDFMSRTGIEAGYMTLHQKGVAHGPQPGRTEASIGKKETYEYAVMVDTFAPLKLTEHVQNCMSKDYNRSWLED
>NZ_CP015194.1|WP_106650845.1|3555823_3556738_-|LysR-family-transcriptional-regulator
MRIDIDAFNVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEEHLGVQLFSREQYRAELTQEGRVILAEGQRLLQHLANIEHLASRFSEGWEPKLELVIDGALPMEPIMTALKRMAEHQIPTKIQLNMEFLGGVQHRFERDNADLMLVKDYRTGPYYHPQPLPAITSVLVASASHPLSFIREISLSELQQHVELTIEDSSPNKSYRDEMQFGGDKVFYLSGFIMKKNALLKGLGFGWLPDFLVQEELVKGELVEIDFVGGSRYTFIPQLVSTLERPLGRAGQLFTELILEEFAKAEQFNGVGLG
>NZ_CP015194.1|WP_106650844.1|3554771_3555566_-|TIGR00266-family-protein
MSRRCHEVDYEIIGHSMQLVEVELDPNETVVAEAGAMNYLEQDISFEAKMGDGSEPESGFFGKLMGAGKRALTGESIFMTHFTNQGNQKRKVAFAAPYPGTILAIDLAEHGGELICQKDSFLAAALGTRVTMKFNRRLGTGFFGGEGFILQSLQGDGMAFIHAGGTLVKKELRGETLRVDTGCLVGFTPGIDYDIERAGSLKSMVFGGEGLFLATLKGHGTVWLQSLPFSRMADRIIAHAPSAGGSDRGEGSVLGGIGRMLDGR
>NZ_CP015194.1|WP_106650843.1|3552504_3552849_+|hypothetical-protein
MNKFTSMVVAGLVLSLMAPISVFAKDDQEHKHHKNDKDLPPGLQKKVNRGQPLPPGWQKKLHRGDVLEHDIYDRGRIIVPLDKDGIISIQVEGALIKLDNNSRKILDIVNIITE
>NZ_CP015194.1|WP_106650854.1|3567952_3569602_-|dipeptidase
MSQSGIQHARVRRALSLALLTASSWVMPQCIAAPASVTTAAHTNVPQLSPNALKVADYAVAKYDAAMVQSLTQLVSFNTQAVEGQTPDTNPAFVGFKSSLKQLSQELGLDYADHGYVVLIGLDANSAVNNESKKLGIVTHGDVQPANPALWAKSPYLLDTQSEPGKLIGRGTEDDKGAIVTAMYAMKAIKDKHIKRDRRIELLVYLAEESDWEPLKTFLASYTPADMNITIDAEYPVVTAEKGWSKISFTVPKVTHSNIEAKAGTSTQAPTLTAFSGGYFASQVPQQAEAEIEAVSPALLTKLQTRAAAQQGMKYRFENHCVDKLCNLHIFADGKAAHSSTPEDGVNAVTHLAALLSPGLNDKPWPKTSASLTVTAMNELVGLGIYAEQFGDLAYKDDFMGPLTLAPTVVVQTQKGTEVTINLRRPVGKTPELLAQQAREALALWQDKHQVQLADIESYWGEPMVMKDAPQQQPLLDVFAHFTGIVNPKPVAIGGSTNSKLFPNALSFGPAMPGVEYTGHTEKEFITHKQFMLNLKMYTAAFIELSAVK
>NZ_CP015194.1|WP_106650855.1|3570013_3572218_+|M3-family-metallopeptidase
MKGLTLKPQARTAKLTLSALALALTLGACSTQQPEASVQANAAPNAVSAQIISQNATNPFFKPYDTFMEIPAFDKIKPEHFLPAFKAGVAQQHEQIQAIVDNKAKPTFANTIEAMEFSGDLVTRVSNVFFNLTGADTTPALQALSKEVSPMLSSAEDDILLNDKLFQKVKAVYNAKDSLKLSTAQAKLLEDTYKSFTRGGANLSEQDKTKLRALNEEIGKLNLAFGDNLLAETNAFELVVDSKADLAGLPEDVIATAFETAKKRGHEGKWVFTTSRPSITPFLTYADNRELREKLYKGYIERGNNNNANDNKIILAKIAALRAERAQLMGYKTHADFVLEERTAKTPENVYGLLNKVWPAALAQAKAEVADMQAMIDAQGGKFKLQAWDWDYYADKIRVAKYSFNEQQTRPYFSLDSTLKGVFYTANRLYGLTFKERTDLPKYNAEVRTWEVYDKDGKLMAIFMGDYFTRDSKRGGAWMNSFRKQYNMNGVDSKPIIVNVLNYPRPAGNEPALLTFDEASTLFHEFGHALHGMLSNVEYRSQGGTAVPRDYVEFPSQVNENWMTQPEVLAQFAKHYKTGEVIPQELVKKIQAASKFNQGFATVEYMAATKLDLDWHTLTDTTPKDAAKFEADSLAAMGLIEEISPRYRSTYFSHIFAGGYSAGYYSYLWSDILGADAFEAFKENGIFDKATADSFRNNILSKGGSDDPMLMYKNFRGKEADIEPLLRSRGLLAE
>NZ_CP015194.1|WP_106650857.1|3572695_3573175_+|hypothetical-protein
MSDNFFEKHDLSIGVFVVGIALIMFLMFGAGAIGPLLILTIETLFGKLTNEEYGILFASSIVIMTLSIVIPNVLIIRGRPRAVKINKINVYFQLLCYLLFLFVLEHKKTWIFLCFVIFPLLENWLISSAKYLTFLAFYETLRKDPIRFRQSLANKYLSK
>NZ_CP015194.1|WP_106650858.1|3573292_3573742_+|acetyltransferase
MNIEMVEKADHLSLLDIWEASVRATHDFLAEEDLQQLKPLILEQYFDAVHLKCAKNNNGEILGFCGVHEGNIEMLFISPDARGKGIGCMLASHAIKELGATKVDVNEQNQQALGFYQHIGFSVTGRSPVDGQGKPYPLLHMALYSIEGL
>NZ_CP015194.1|WP_106650859.1|3573883_3576028_-|M3-family-metallopeptidase
MRKSVITTAVAAALLLGACSDKPAASANEAKNAVATQIAAKAEATNVLLSKSPLQDQAPQFNLIHTADYAPAFEQGIKAHDAEIAAIVNNKQAASFDNTILAMETSGELLTRVSRTFFNLAGLISDDDFQKTEADLAPKLSAHRDNIYLDPTLFARVEAVYQQKSSLNAEDQRLVEYYYEQFVRAGAKLSVEDKAKMRDFNAELATLATDFSQNSLKSFKDDVIVVTDKAQLAGLSDSEIATLAAAAKAAGKEGYLITLVNTTRQPVLSSLSNRELRQKVWETSAHRAVATNGPLIVKMAQIRAKKANLLGFDTWASYAVADQMAKTPAAVYEILDDLAPKALARAKVEAADIQAEIKKAGGDFELQPWDWAYYADKVRQEKYSLDESSIKPYFEFNTVLQDGLFFAMHKLYGISLKARTDLPVWNPDVLAFEVFDKDNSSIGLFYLDPYAREGKGGGAWMDEFVTQSGLLGTKPVVYNALNIPKPADGPTLMTFDEVTTMFHEFGHAVHGLFSQVKYPSVAGTSTARDFVEFPSQVNEDWNIDPAVIANYAKHYKTGEPIPKALLDKILASNKFGQGFDTVEYLSAALLDMEWHSISADTQISDVEQFEHQVLAKHGLDFAPIPPRYKSSYFSHAFSGGYSAGYYAYLWTEVFAADAFAYMGEQGGLKADNGDKFRKEVLSKGNSEDLMQDYIHFTGKKPTTDALLKRRGLVD
>NZ_CP015194.1|WP_106650860.1|3576735_3578781_+|bifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/3'-nucleotidase
MLNKKILAVMITAALGVSACNSDDDKVVQADLRVLETTDLHTNIMDFNYYSGKDDPTIGLARTASLIHAARSEAKNSVLVDNGDLLQGSPMGDYMAKVGLQMGDVHPAYKAMNLLDYEVGNIGNHEFNYGLDFLNKSISGADFPYINSNVYCADDKGCWKEVKKGEHLFTPYIIKQKNIIDSEGNNQTINIGYIGFVPPQILLWDKQNLTGKVTVEDIVTTAKKYVPEMKAKGADIIIAIPHSGIGSTENPGDPMAENATYALTYVDGIDAILFGHSHSIFPDAKYADLPNTDVTKGLLNGVPAVMPGRWGDNLGVVDFKLERRDDKWHVLSAKTQARPIYDGANKAPLVEADAAIHDAVAAEHQGTLAFVDEPIGVAAADMYSFLTLVQDDPTVQIVSDAQIANVKAKLPPELKGLPVLSASAPFKAGGRHGTTSDADQFVQVDKGSLTFKNAADLYLYPNTMVAVKATGAELKDWLECSANQFNQIDPTKTTPQGLINWDGHPTYNFDVLDGLTYKIDVTQPSKFDRDCAVVNANANRIVDLSYKDENGKVITGEEFAAKEFIIASNNYRAFGGKFAGTGSDHVVLELPDTNREALAAYITAQSQYNETTGKYEAMVNPSADYNWDFKTITTNVTLDVRFETQDSDKAAAFIEANKQREMKKISKDELGFAVYSINLTK
>NZ_CP015194.1|WP_106650861.1|3578986_3579745_+|DUF2057-domain-containing-protein
MKYQSILCATALLLGAVQPAMADVHLNLPKNAEVLTVNGKPAVKSSNFVLADGINQIAFRYAAQYRQQADSVHYLSDVLIVRFDASAQTLTLTLPAINSARDAKKFDESPKLTLLNAQDETVSFTSDKLIKNGIQLGRDFEHEILQYNLSNHPASLNLTMNTATTQANDIIAPVLASQPHIRQAPAVVSTSLIAPAVMSSSAAANNDKSKPTTSVSSTTTPSQAEISQMLDYWYKQANDSTKASFKAKINKE
>NZ_CP015194.1|WP_106650862.1|3580091_3581130_+|IS630-family-transposase
MKPETAESLLSLSKREKNPHKRMRLLAVSLFLQCHNRTQVASQLKVVRSSVNLWVFSYLGQGLAGLEDKPRLGKKPSLSNEQKRRLARYIEFKAQSDEGGRLTGADIQQYISSEFNVEYHPNHIYKLLKSMGFCWITSRSSHPKQTQSLQDAFKKFPLETILHAPIHIQPHQIDIWFQDEARFGQQNTTTRLWAPKGSRPRALRQQQFEYVHLFGAVCPATGETEAIITPFVNKDIMHQHLELIAKRTKPGRHAVVVMDGAGWHTNDIAADIPNLSILKLPPYSPELNPIEQVWSWLRQHYLANRCFKGYEDIVDACSQAWNSFISCTKRVVKMCSREWAKVTEL
>NZ_CP015194.1|WP_106650863.1|3587652_3588201_-|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MSRAVFLDRDGVINKDHGYVHLVDDFEYIEGVFESCLSLKEMGYKLVVVTNQSGIARGMYTEDQFHSLTEWMDWNFADKGVELDGIYYCPHHADNGIGEYKVDCDCRKPKPGMLNDAAQFLKIDLAHSVMVGDKAEDMQAAKAAGVTTRILVRSGKVIADDSDATAVLDSIADVPAYLKSLG
>NZ_CP015194.1|WP_106650864.1|3588666_3589338_+|GntR-family-transcriptional-regulator
MSRTTPIVHKTRTQLVVEVLRERILSGDIAAGEPLRQSALAEALNVSRIPVREALLQLEAEGLVKFEPHKGATATVLSVEQVTELFELRAMIETDLLAKAIPRLQDADLEKAERVLEQLESAFKHEDAVASWSELNTQFHTCLYQAANRPHTLEVVHGLNTNCDRYIRLQLLLAGGIPAAEHEHRALLNHCKLRETEKATALLRHHILHAAMTIRDLVAKQVV

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Crispr_ID: NZ_CP015194_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015194_3

3768370-3768484

Unclear

Consensus_repeat	Method
ACGAAGGGGACCCGGACATATTAATTTGAACT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP015194_3

>merge|NZ_CP015194|3|3768370-3768484|CRISPRCasFinder
ACGAAGGGGACCCGGACATATTAATTTGAACTTAATGTTCCCGTTTAACATCTACGGTGTCCTAGGCACGCTCTTCTAGAAAAACGAAGGGGACCTGGACATATTAATTTGAACT

>NZ_CP015194|3|3|3768370-3768484|CRISPRCasFinder
ACGAAGGGGACCCGGACATATTAATTTGAACT	TAATGTTCCCGTTTAACATCTACGGTGTCCTAGGCACGCTCTTCTAGAAAA
ACGAAGGGGACCTGGACATATTAATTTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015194.1\|WP_106650977.1\|3764017_3765709_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|225080
NZ_CP015194.1\|WP_006082299.1\|3779075_3780455_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP015194.1\|WP_106650979.1\|3770147_3771557_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP015194.1\|WP_006082288.1\|3761493_3761964_-\|protein-phosphatase	unknown	unknown	gnl\|CDD\|350354
NZ_CP015194.1\|WP_106650976.1\|3763367_3763925_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|234860
NZ_CP015194.1\|WP_006082297.1\|3775747_3777145_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP015194.1\|WP_106650973.1\|3759055_3760282_-\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP015194.1\|WP_106650974.1\|3760456_3761353_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151
NZ_CP015194.1\|WP_106650975.1\|3762036_3763320_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP015194.1\|WP_106651855.1\|3775016_3775748_+\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NZ_CP015194.1\|WP_106650982.1\|3780995_3781430_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP015194.1\|WP_106651854.1\|3755798_3756215_-\|DUF4279-domain-containing-protein	unknown	unknown	gnl\|CDD\|372913
NZ_CP015194.1\|WP_106650983.1\|3781526_3782465_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP015194.1\|WP_106650971.1\|3756882_3758262_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP015194.1\|WP_106650972.1\|3758455_3758980_-\|CIA30-family-protein	unknown	unknown	gnl\|CDD\|369941
NZ_CP015194.1\|WP_106650978.1\|3765880_3767710_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP015194.1\|WP_071939600.1\|3773931_3774951_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270392
NZ_CP015194.1\|WP_006082294.1\|3773234_3773465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015194.1\|WP_106650981.1\|3780536_3780986_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP015194.1\|WP_106650980.1\|3777274_3779071_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654

Protein	Function_ID	Function_description	E-value
NZ_CP015194.1\|WP_106650977.1\|3764017_3765709_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	6.64568e-54
NZ_CP015194.1\|WP_006082299.1\|3779075_3780455_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP015194.1\|WP_106650979.1\|3770147_3771557_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP015194.1\|WP_006082288.1\|3761493_3761964_-\|protein-phosphatase	gnl\|CDD\|350354	cd14504, DUSP23, dual specificity phosphatase 23. Dual specificity phosphatase 23 (DUSP23), also known as VH1-like phosphatase Z (VHZ) or low molecular mass dual specificity phosphatase 3 (LDP-3), functions as a protein-serine/threonine phosphatase (EC 3.1.3.16) and a protein-tyrosine-phosphatase (EC 3.1.3.48). It deactivates its MAPK substrates by dephosphorylating the threonine and tyrosine residues in the conserved Thr-Xaa-Tyr motif residing in their activation sites. DUSP23 is an atypical DUSP; it contains the catalytic dual specificity phosphatase domain but lacks the N-terminal Cdc25/rhodanese-like domain that is present in typical DUSPs or MKPs. It is able to enhance activation of JNK and p38 MAPK, and has been shown to dephosphorylate p44-ERK1 (MAPK3) in vitro. It has been associated with cell growth and human primary cancers. It has also been identified as a cell-cell adhesion regulatory protein; it promotes the dephosphorylation of beta-catenin at Tyr 142 and enhances the interaction between alpha- and beta-catenin.	2.11724e-43
NZ_CP015194.1\|WP_106650976.1\|3763367_3763925_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|234860	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional.	1.36108e-56
NZ_CP015194.1\|WP_006082297.1\|3775747_3777145_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	9.45149e-121
NZ_CP015194.1\|WP_106650973.1\|3759055_3760282_-\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP015194.1\|WP_106650974.1\|3760456_3761353_-\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	8.69551e-41
NZ_CP015194.1\|WP_106650975.1\|3762036_3763320_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.18212e-143
NZ_CP015194.1\|WP_106650982.1\|3780995_3781430_-\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	3.37334e-23
NZ_CP015194.1\|WP_106651854.1\|3755798_3756215_-\|DUF4279-domain-containing-protein	gnl\|CDD\|372913	pfam14106, DUF4279, Domain of unknown function (DUF4279). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 134 and 145 amino acids in length.	7.15969e-21
NZ_CP015194.1\|WP_106650983.1\|3781526_3782465_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.81304e-70
NZ_CP015194.1\|WP_106650971.1\|3756882_3758262_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	8.46681e-20
NZ_CP015194.1\|WP_106650972.1\|3758455_3758980_-\|CIA30-family-protein	gnl\|CDD\|369941	pfam08547, CIA30, Complex I intermediate-associated protein 30 (CIA30). This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation.	2.11409e-46
NZ_CP015194.1\|WP_106650978.1\|3765880_3767710_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.24559e-156
NZ_CP015194.1\|WP_071939600.1\|3773931_3774951_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270392	cd13674, PBP2_TRAP_SBP_like_1, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.9269e-161
NZ_CP015194.1\|WP_106651855.1\|3775016_3775748_+\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	1.17782e-23
NZ_CP015194.1\|WP_106650981.1\|3780536_3780986_-\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	3.16289e-28
NZ_CP015194.1\|WP_106650980.1\|3777274_3779071_+\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.08639e-162

>NZ_CP015194.1|WP_106650978.1|3765880_3767710_+|ABC-transporter-ATP-binding-protein
MFKRFESWVEALPDDEPTKPPTGVYAFCRHYTKGYELPLILMSVLTAMLAMLEVSLFGFMGQLVDWLVKKNPETLFQDEGTTLMLMGGMVLIVMPILVLLHALIMHQTLLGNYPMSIRWLAHRYLLKQSVSFYQDDFAGRIATKVMQTSLAVRETVMKLLDVLVYILVYFTSMLVMIASADLRLVIPMLIWLALYVGLQWYFVPRLKSVSTEQADARSTMTGRIVDSYTNITTVKLFAHTQKEAEYAKSSMRIFLDTVYRQMRLVTGISVSVQIINYVLAFSIAAVSIALWTDNAITVGAIAIAVSLALRLNGMSQWIMWEISSLFENIGTVTDGMNTLSKTTIIQDEPNAKPLVVNQGKIDFNQVCFHYGEQTGVIEDLNLNIKAGEKVGLVGRSGAGKSTLVNLLMRFYDVEKGQINIDDQDIKTVMQDSLRSQIGMVTQDTSLLHRTIRENILYGNPTASEEQLDSAIKQAQAYDFIKDLSDPHGNHGLDAQVGERGVKLSGGQRQRIAIARVLLKNAPILLLDEATSALDSEVEAAIQESLYELMQGKTVIAIAHRLSTIAAMDRLIVLDQGRVVEQGTHQELIDAGGIYAQLWAHQTGGFLGVD
>NZ_CP015194.1|WP_106650977.1|3764017_3765709_-|DNA-3-methyladenine-glycosylase-2-family-protein
MSTDRVPKSSNKRDEIDSVHSLESSSGQLSASICREARMSRDPRFDGKFFVGVLTTGIYCRTVCPAVAPKEQNVRYFDSVVKAAQAGLRPCLRCRPDSAPGSNPWKGTGTTLARAISLIETGALAGKSSGEPASTVTQLAERLGISSRYLNKLFTEGFGTSPKQYALYRQLLFAKQLLHQTQLPITQVALAAGFNSIRRFNEAFKQTLQLTPTQLRKSALTKAAKESMIEPLTGLSEIDSMGECVPHYGLTLYQYYRPPLDWASQLAFYRLRAVTGMEWFTPQMSHPQASDVVGDEASVVDEAKAGDNGLEYGRCFALGKMRGTVHIIHEPKLNRFKLAIALTEDSVVDELQLLVTEVRRILDLDADMQQIEQGLSTLPSLGLTPFSGLRIPGAGSLFEAVCRAILGQQVTVVQATKLLNILVEAYGERFSLNGREYRLFPTPEAIREAGLTELKMPGARKLALNALAVFICEHPEASVDDWLSVKGIGPWTIAYAKLRGLGDPNVFLHSDLIVKKHLLALYIKNNRLDETAAAAVSYPQLCEQLSQQIAPWGSYLTFQLWHQ
>NZ_CP015194.1|WP_106650976.1|3763367_3763925_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MKHAIRQLSQAPSIAEYQPCAVDTFISPAGILQLNANAYGLSHLTVVGSDRTEIALAKASEDALNQAKAYIRETQAQLADYFAGERVEFDLKLAPKGTEFQRDVWQALLNVDYGQSCSYGQIAEQIGRPKAVRAVGAANGANPIAIIVPCHRVIGKNGKLTGYAYGLAMKQQLLTLETDKHCLDI
>NZ_CP015194.1|WP_106650975.1|3762036_3763320_-|DEAD/DEAH-box-helicase
MTQASSSAASFAQLGIIAPLLNRLTELAYVSPTPVQAATIPAVLVGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNTQMQSLRAGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFPEEVRELTAKLLNDPLEYQLQSEQESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVIEKKNKLKLVREQIVGFEADDEMPVELLEQAKPVAKPEGMGKKKRKQLPAANAEFWGKKS
>NZ_CP015194.1|WP_006082288.1|3761493_3761964_-|protein-phosphatase
MQHLFWLVEGKVAGRSGPNKDPWDLQALKEAGIGAILSVNGGEGCEPSTFKKLDLRYECIPFSRNVPPQDGDVAICVAQLPKALAFIQQCEADGLPVVIHCRSGKDRTSLIMAYYLMVNGAAPLHAVSQVRSIRDIAFTADGWDQFAFDVLYALQD
>NZ_CP015194.1|WP_106650974.1|3760456_3761353_-|chemotaxis-protein-CheV
MKSKASQSQGLLLFRLSQTQVFALGTLKVRELVPYTRLSKIPQSHPTILGASTIRGHTIPIIDMAAAIGYRPIAPEEREKCYIIITDCQRMIIGFLVRGIDKIIECNWRDIEAPSSSLGKNAYLTGVTRFEDQLVQLLDVELLLSKIFPDDPQTNRAILTDVQREKLKPMNILLVDDSKVARKQLSDALDMINIPYRVTADGKEALVMMEQAALEHHPIDILVSDIEMPGLDGYELAFEVRDNPLTAKAYIILHTSLSSEISVSQAHQVGANEALTKFDAHELIDAMLRGADLALDKR
>NZ_CP015194.1|WP_106650973.1|3759055_3760282_-|serine/threonine-transporter-SstT
MKQESSLLAKLANGSLVIQIFLGIIAGVVLASFSPSSAKDIAFLGSLFVGALKAIAPILVFILVASSIANQKKNTQTNMRPIVVLYLFGTFAAALTAVLLSSIFPTNLVLVAGVEGTSPPQGIGEVIHTLLFKLVDNPVNALMTGNYIGILAWGVGLGLALHHATDSTKQVFADMSHGISQMVRFIIRLAPIGIFGLVAATFAETGFAAIAGYAQLLAVLLGAMAIIALVVNPLIVYVKIKRNPYPLVFQCLRESGVTAFFTRSSAANIPVNIALCEKLKLHEDTYSVSIPLGATINMGGAAITITVLTLAAAHTLGIQVDLLTALLLSVVAAVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVVQDAAETALNSSTDVIFTAAACEAAENKAKLS
>NZ_CP015194.1|WP_106650972.1|3758455_3758980_-|CIA30-family-protein
MIFFDFSVLDAAKPWYGINDTVMGGLSRSKMTVSPLGYGEFSGHVSLANGGGFASVRCEFSPIDVSEFTGIYIELDGDRTKDYKVNLKDVDTPQSTVYQAPMPTPTHQTFGVSSARVLNWQRIEIPFRDFKPQCRGKPISRVAIDLNQVCSLGLVIGAQQSGDFSLKIREIGYY
>NZ_CP015194.1|WP_106650971.1|3756882_3758262_+|Gfo/Idh/MocA-family-oxidoreductase
MHNIHRRNFLKAAGAATAGLVTANIALNAYASSVAPKPQVGKSVIGLIAPKMDVVRVGFIGVGERGFSHVEQFCHLQGIELKAICDTHQAVLDRAVDHIVKQNRPKPTVYTANDLSYRDLLSRDDIDIVIISTPWEWHAPMAIETMESGKHAFVEVPMALTVEECWQVVDTAERTQKNCMMMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRNGNLYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGDINTSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIAVENGGFGQSYHEWDMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRMIYCLRNGEALDQDVYDGASWSVVNILSEHSLNDRSNSVTFPDFTRGAWQTAKPLGIVGA
>NZ_CP015194.1|WP_106651854.1|3755798_3756215_-|DUF4279-domain-containing-protein
MGAFEYSQATLRIFGDDLIPEDVSNLLGGTATKSKKKGDEDVSKISGKVRIAKTGIWHFQAKKREPEDLNAQIEAILSQLTSDLAIWEKLYQRYKVDMFCGLFMGNWNDGLSLSPEIMLALGQRGIVLSLDVYSGSDD
>NZ_CP015194.1|WP_106650979.1|3770147_3771557_-|glutamate--tRNA-ligase
MTTKTRFAPSPTGFLHVGGARTALYSWLQARANNGEFVLRIEDTDIERSTQAACDAILEGMNWLGLTWDEGPYYQTKRFDRYNEIIAQMLAKGTAYKCYCSRERIDALREAQAANGEAQKYDGCCRDLPARDTDEPFVVRFKNPIGGSVVFDDHVRGRIEFSNDALDDLIIARTDGVPTYNFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPIPEYAHVSMILGDDGAKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFSLEEMKQYFKLGDINKAASAFNTDKLVWLNQHYIKSLAPEYVATHLQWHMDDQKIDMSNGPALAEVVTALAERAKTLKELAASSRYFYEDFAEFDEAQAKKHLRGVALEPLQLVQQKLAALTEWTVEAIHQAIEDTATELDVGMGKVGMPLRVAVTGAGQSPGLDITLFLIGRSRSEQRISKAIEFVADRINS
>NZ_CP015194.1|WP_006082294.1|3773234_3773465_+|hypothetical-protein
MASVSQSASLANIAAYLKHTHACDEQTALKEAREVMHNLVSMRQKGFITGWYFDEQGHLELLPSDAILKRILLDDD
>NZ_CP015194.1|WP_071939600.1|3773931_3774951_+|TRAP-transporter-substrate-binding-protein
MTLNQQTGLTRPLKTLVKMLAVASVFATSFNVFAEPIEIKFSHVVAENTPKGQMALKFKELVEQRLPGEYKVSVFPNSQLFGDNNELAALLLNDVQFVAPSLSKFERYTKRLQVFDLPFLFNDMDAVNRFQQGEAGQTLLNSMTRKGIVGLGYLHNGLKQFSANTPLKNPSDANGLKFRVMASDVLAAQFDAVGAIPVKKPFSEVFTLLQTRAIDGQENTWSNTYSQKFYEVQSQITESNHGVLDYMVVTSDTFWKGLPADKRKIIKEALDESIALGNKIAAEKDNQDKQLILDSKRSQLVTLTPAERQKWVDVMKPVWAKFEDQIGKDVIEAAVAANK
>NZ_CP015194.1|WP_106651855.1|3775016_3775748_+|TRAP-transporter-small-permease
MISRIFGYFEEGVLNLLITLMTLLVFSEVVARFFFNTGFLWIQELTLTFCGWFVLFGMSYGVKVGAHIGVDAFVKNLAPRAKKITSLVTAFVCIVYCGLFLKGSWDYLSQMYQIGVPMEDIHFPQFLLHIFNLDFLKSFADTYKDVLGQDLLTPLQNIDPDFAWNTLRIDVEDGAVPIWLSQSILIIGFSMLTWRFAELFIAILRDQVTGFQFADEAKESMHLIDESVKNANEESVSDEKETK
>NZ_CP015194.1|WP_006082297.1|3775747_3777145_+|TRAP-transporter-large-permease-subunit
MAIATLFTALLVCMFLGMPIAIALGFSSMLTILFFSNDSLASVALKLYESSSEHYTLLAIPFFILSSAFLSTGGVARRIIDFAMDSIGHVRGGLAMASVMACMLFAAVSGSSPATVAAIGSIVIVGMVKAGYPEKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGLMMGFILMIVIYIVARFKNLPSRPFPGFKQLGISSAKALGGLALILIVLGSIYGGVASPTEASAVACMYAYFIAVFGYRDIGPLKEVAWRNQGESLPKAAARNLGHMFLGLIKTPIDKDIRNVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAEHIVNMGLPAWGFLIIVNLLLLAAGNFMEPSAIVLIMAPILFPIATHLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTAGITGKSIGWVIQSVLPWLLLMLAFLTLITYVPQISLFLPEWLDSMRGY
>NZ_CP015194.1|WP_106650980.1|3777274_3779071_+|sensor-histidine-kinase
MLPMTPKAKKRLFLTVVLLAGLFATLKLTYWVHLHQGKIEIQAQSEKQLKELVSFLDGALSRYESIPHVLSTNPMLANVLNDQQNPDKIQELNLYLEEIQHVTEASDIYLIDALGIAIAASNWQQSFSFIGKDYSFRPYYTDAISGNLGRYYAVGTSSDKRGFYFSYPIYQQGGKGILGAIIVKVDISGIEQQSTSIAIAGQYQFLISDPEDIVFISSVDEWRLKSLTPLTQAKQYALNASKRYAERPIGELLMKPPYESGSQAMIYQLQTGRDHEQYMDNHQLMAKAGWRVHILAPIKPLMSSLPALMLLSASIYLLLALSILFSAERRRNLQRMQLAQSLLEQRVEERTQDLQQANHQLKDTQDELIQAAKLTVIGSLSASINHELNQPLAALRSYAQNTQTFLARNMQDKALDNIKIIIELTDRLADIVGQFKSFTRKSQGTDSATDIGRCIKQALTIVQPAIDKQGVELDVQLPNGNYQVWGDKVRLQQVFVNIMSNAIVAMQQSVKRSLVIRVTSEDKFCISIQDSGPGVRESQMEKIFEPYFTTNERHGLGLGLSISQRIIESMQGQINVANAEEGGAIFQIILPIYLLEER
>NZ_CP015194.1|WP_006082299.1|3779075_3780455_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MSVPNSIQDYSVLIIDDEPHIGTVLVQLFELEGIKALATTEPKGIAKHLHKDWAGMVISDVNMPQLDGISLMQQIRLQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHILDVVKRALDKRSLTLENRKLKKDLESQSVPGPRILGNSVGINRMRHIIDQVIDTPADVLIEGETGTGKELVARYLHDHSSRSQANFVAINCGAIPENLIESELFGAEAGAFTGVDKMRIGKFEYANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSISLDIRVIAATKVDLKSLCDTGEFRQDLLYRLNLVTVPIPPLRDRREDIPLLFLHFARVASARYHKALIALNAEQNAILTSHDWPGNVRELRNLAERFVLLGGEAAFAGTLGNTPSLHSSMSLLQRVEFFERVLIEEALSHNKGSIKQTMEQLELPRKTLYDKMRKYDLDRKQYINSDD
>NZ_CP015194.1|WP_106650981.1|3780536_3780986_-|DMT-family-transporter
MTLIMIMLAVIGGATLSMQAAINGQLGSKVGVFRSAFLTFSTGALITGLLIFYFEPPQAVTLLDVPKWQLLGAMCGVPYIVIMVLAVQRIGTAVATVAVIFGQLLMSMLIDNFGWFGNETIHFSTSRIAAVICLGIALYFIHSSNKTSA
>NZ_CP015194.1|WP_106650982.1|3780995_3781430_-|DMT-family-transporter
MQFLMIFFVVLGGAGLSVEAGLLGPLGAEVGELWATFSIFGVGAALTFILMLFFSPRNSPSFFAQPSWTLTGGVLGPIYVVILTIATPAIGIAMTMIGILAGQVAKSLLIDHYGLFGTAHRRIDTKRIVALLFIVVALVLMAQS
>NZ_CP015194.1|WP_106650983.1|3781526_3782465_+|LysR-family-transcriptional-regulator
MNDINSINMRALKFFIGVYDSKSYSVVARKEGVSPSMISRVISQLEDSLGQQLFYRNTRAIIPTESGRIFIEYARSMADQLNEVRNELLDRTIEPKGLIRINAPVFFGQRHIAPWLAGFLRRYPQVQVELTQTDDYIDPHVSAADIIFRIGTLVDSSLHSRILGSQTYHLAASKAYIALHGMPTEPADLKNYQCLVYSGSSGQNRWFFNKNKTTWLHQPITPILTSNNAETLLIAALNDMGIVLFPDWLIGDSLKNGQLISLLTDCESAIKIDQHYITAIYPNSRTPSLNVRAVIDYFLEVYGSPPYWKYQG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015194_2	2.1\|3567597\|28\|NZ_CP015194\|CRISPRCasFinder	3567597-3567624	28	MT774382	CrAssphage cr10_1, complete genome	86540-86567	7	0.75

1. spacer 2.1|3567597|28|NZ_CP015194|CRISPRCasFinder matches to MT774382 (CrAssphage cr10_1, complete genome) position: , mismatch: 7, identity: 0.75

attcctaaatgcttaaccaagcatagtt	CRISPR spacer
taagttaaatgctttaccaagcattgtt	Protospacer
    .********* ********* ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

760930 : 769425

Bacillus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106649005.1\|760930_762295_-	GHKL domain-containing protein	W8CYF6	Bacillus_phage	8.4e-08	23.6
WP_006079500.1\|762287_762983_-	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	4.0e-06	25.7
WP_106649006.1\|762985_763288_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_106649007.1\|763647_764592_+	hypothetical protein	NA	NA	NA	NA
WP_106649008.1\|764672_765146_+	peroxiredoxin	M1I839	Pelagibacter_phage	1.9e-23	48.2
WP_106649009.1\|765228_767211_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.6e-15	36.9
WP_106649010.1\|767340_768657_-	two-component system sensor histidine kinase EnvZ	W8CYF6	Bacillus_phage	8.7e-10	24.0
WP_006079507.1\|768699_769425_-	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	1.7e-31	34.7

DBSCAN-SWA_2

1342086 : 1386533

Leptospira_phage(40.0%)

transposase,integrase

attL 1345757:1345771|attR 1394965:1394979

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106651753.1\|1342086_1343208_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_106649373.1\|1343318_1346408_-	efflux RND transporter permease subunit	S5VL66	Leptospira_phage	1.3e-24	22.4
1345757:1345771	attL	NA	NA	NA	NA
WP_106649374.1\|1346411_1347494_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_106649375.1\|1347622_1348624_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_106649376.1\|1348620_1349982_-	MATE family efflux transporter	NA	NA	NA	NA
WP_006086113.1\|1350206_1350497_+	co-chaperone GroES	A0A221S322	uncultured_virus	2.0e-12	38.9
WP_106649377.1\|1350554_1352192_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.4e-179	66.4
WP_106649378.1\|1353322_1354972_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	9.7e-176	55.1
WP_106649379.1\|1355058_1355319_+	hypothetical protein	NA	NA	NA	NA
WP_106651754.1\|1355846_1356083_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_106649380.1\|1356773_1357103_+	hypothetical protein	NA	NA	NA	NA
WP_106649381.1\|1357502_1359149_+	DUF91 domain-containing protein	NA	NA	NA	NA
WP_106649382.1\|1359984_1360371_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_106649383.1\|1360546_1360798_-	DUF2999 domain-containing protein	NA	NA	NA	NA
WP_106649384.1\|1360964_1362479_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_012088215.1\|1362932_1363229_+	DUF134 domain-containing protein	NA	NA	NA	NA
WP_106649385.1\|1363225_1363741_+	dinitrogenase iron-molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
WP_106649386.1\|1363760_1364108_-	thioredoxin family protein	NA	NA	NA	NA
WP_106649387.1\|1364159_1364813_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_106649388.1\|1365221_1365608_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_106649389.1\|1365609_1366575_+	hypothetical protein	NA	NA	NA	NA
WP_106649390.1\|1366571_1368566_-	diguanylate cyclase	NA	NA	NA	NA
WP_106649391.1\|1368878_1369694_-	hypothetical protein	NA	NA	NA	NA
WP_106649392.1\|1369993_1372078_+	TonB-dependent receptor	NA	NA	NA	NA
WP_106651755.1\|1372253_1373747_+	alkaline phosphatase	NA	NA	NA	NA
WP_106649393.1\|1373787_1375425_+	alkaline phosphatase	NA	NA	NA	NA
WP_106649394.1\|1375618_1376347_+	hypothetical protein	NA	NA	NA	NA
WP_106649395.1\|1376599_1377442_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_106649396.1\|1377578_1378286_+	LysE family transporter	NA	NA	NA	NA
WP_106649397.1\|1378384_1379215_+	hypothetical protein	NA	NA	NA	NA
WP_106649398.1\|1379871_1380735_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_106649399.1\|1380713_1381832_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_106651756.1\|1382003_1382225_+	hypothetical protein	NA	NA	NA	NA
WP_106649400.1\|1382682_1383063_+	hypothetical protein	NA	NA	NA	NA
WP_106651753.1\|1383114_1384236_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_106649401.1\|1384560_1385646_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_106649402.1\|1385642_1386533_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.2e-23	30.3
1394965:1394979	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1445855 : 1477258

Vibrio_phage(38.1%)

terminase,integrase,protease,tail,portal

attL 1443629:1443642|attR 1479050:1479063

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1443629:1443642	attL	NA	NA	NA	NA
WP_106651757.1\|1445855_1446551_-	helix-turn-helix transcriptional regulator	R9TNM0	Vibrio_phage	3.9e-62	50.6
WP_106649455.1\|1446637_1446841_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_106649456.1\|1446872_1447496_+	hypothetical protein	NA	NA	NA	NA
WP_106649457.1\|1447501_1447828_+	hypothetical protein	G8CTB7	Vibrio_phage	6.4e-07	38.4
WP_106651758.1\|1447998_1448217_-	hypothetical protein	NA	NA	NA	NA
WP_106649458.1\|1448435_1449185_+	transcriptional regulator	Q8HA96	Salmonella_phage	1.9e-33	46.1
WP_106649459.1\|1449181_1449868_+	replication protein P	I6PBN0	Cronobacter_phage	2.0e-10	28.5
WP_106649460.1\|1449857_1451114_+\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	5.0e-47	33.9
WP_012586800.1\|1451169_1451388_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_106649461.1\|1451374_1451752_+	hypothetical protein	NA	NA	NA	NA
WP_106649462.1\|1451760_1452375_+	oligoribonuclease	M4M9I5	Vibrio_phage	2.2e-64	63.6
WP_106649463.1\|1453295_1453829_+	lysozyme	A0A1S5R1I9	Pseudomonas_phage	4.3e-24	38.0
WP_106649464.1\|1453809_1454313_+	hypothetical protein	NA	NA	NA	NA
WP_106649465.1\|1454423_1454780_+	hypothetical protein	NA	NA	NA	NA
WP_106649466.1\|1454733_1455267_+	DNA packaging protein	O64316	Escherichia_phage	1.7e-36	50.3
WP_106649467.1\|1455241_1457239_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	8.4e-190	49.5
WP_106649468.1\|1457267_1457474_+	hypothetical protein	NA	NA	NA	NA
WP_106649469.1\|1457523_1459098_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.3e-124	48.6
WP_106651759.1\|1459069_1461079_+\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	4.6e-220	62.4
WP_106649470.1\|1461155_1461479_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	1.3e-07	40.2
WP_106649471.1\|1461471_1461810_+	hypothetical protein	NA	NA	NA	NA
WP_106649472.1\|1461829_1462387_+	hypothetical protein	NA	NA	NA	NA
WP_106649473.1\|1462402_1462828_+	hypothetical protein	NA	NA	NA	NA
WP_106649474.1\|1462824_1463544_+	hypothetical protein	NA	NA	NA	NA
WP_106649475.1\|1463660_1464047_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012088290.1\|1464030_1464336_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_106649476.1\|1464419_1465004_-	Rha family transcriptional regulator	A0A1C9IHV9	Salmonella_phage	3.2e-17	46.4
WP_106649477.1\|1465488_1469775_+\|tail	phage tail tape measure protein	A0A2I7QRW8	Vibrio_phage	4.9e-211	41.1
WP_106649478.1\|1469812_1470184_+	hypothetical protein	A0A2I7QS24	Vibrio_phage	6.6e-24	50.5
WP_106649479.1\|1470191_1472699_+	hypothetical protein	A0A2I7S8M8	Vibrio_phage	5.4e-279	59.9
WP_106649480.1\|1472711_1473659_+	hypothetical protein	A0A088C4T9	Shewanella_sp._phage	1.5e-32	29.4
WP_106649481.1\|1473651_1473957_+	hypothetical protein	A0A2I7QRU3	Vibrio_phage	8.4e-09	40.3
WP_106649482.1\|1473953_1475714_+	hypothetical protein	A0A088C4B7	Shewanella_sp._phage	4.7e-144	59.9
WP_012586821.1\|1475739_1475952_+	hypothetical protein	A0A088C533	Shewanella_sp._phage	7.1e-15	62.9
WP_106649483.1\|1475961_1476171_-	hypothetical protein	NA	NA	NA	NA
WP_106651760.1\|1476193_1477258_-\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	5.6e-116	57.5
1479050:1479063	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2966188 : 3039322

uncultured_Caudovirales_phage(26.67%)

tRNA,transposase,integrase

attL 2968177:2968236|attR 2993589:2994834

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106650467.1\|2966188_2967484_+\|integrase	site-specific integrase	NA	NA	NA	NA
2968177:2968236	attL	NA	NA	NA	NA
WP_106651819.1\|2968279_2969434_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_106650468.1\|2969426_2970776_-	hypothetical protein	NA	NA	NA	NA
WP_106650469.1\|2970766_2971717_-	AAA family ATPase	NA	NA	NA	NA
WP_106650470.1\|2971710_2973726_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_006081615.1\|2973725_2974346_-	hypothetical protein	NA	NA	NA	NA
WP_106650471.1\|2975480_2976380_-	EamA family transporter RarD	NA	NA	NA	NA
WP_106650472.1\|2976489_2976942_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_106650473.1\|2977968_2978820_+	hypothetical protein	NA	NA	NA	NA
WP_106650474.1\|2980933_2981335_+	hypothetical protein	NA	NA	NA	NA
WP_157825775.1\|2981459_2981906_+	hypothetical protein	NA	NA	NA	NA
WP_106650476.1\|2982011_2982860_+	trypsin-like peptidase domain-containing protein	A0A2H4JE36	uncultured_Caudovirales_phage	1.2e-28	32.2
WP_106650477.1\|2985046_2985598_+	hypothetical protein	NA	NA	NA	NA
WP_106650478.1\|2985694_2985991_+	hypothetical protein	NA	NA	NA	NA
WP_106650479.1\|2986082_2986319_+	hypothetical protein	NA	NA	NA	NA
WP_106649401.1\|2986568_2987654_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_106649402.1\|2987650_2988541_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.2e-23	30.3
WP_106650480.1\|2988764_2989382_+	hypothetical protein	NA	NA	NA	NA
WP_106650481.1\|2990372_2991236_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_106650482.1\|2991330_2991696_+	hypothetical protein	NA	NA	NA	NA
WP_106650483.1\|2991726_2992452_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_106650484.1\|2993960_2994389_-	hypothetical protein	NA	NA	NA	NA
WP_106650485.1\|2994833_2995424_+	hypothetical protein	NA	NA	NA	NA
2993589:2994834	attR	NA	NA	NA	NA
WP_106650486.1\|2995585_2996131_+	hypothetical protein	NA	NA	NA	NA
WP_106650487.1\|2996426_2997236_+	hypothetical protein	NA	NA	NA	NA
WP_106651821.1\|2997712_3000124_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	1.1e-29	27.2
WP_106650488.1\|3000287_3001316_+	Abi family protein	A0A059NT88	Lactococcus_phage	1.2e-14	23.7
WP_106651822.1\|3001341_3002700_+	restriction endonuclease subunit S	A0A1V0S9X7	Catovirus	2.1e-06	31.6
WP_106650489.1\|3002692_3003715_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	5.4e-76	46.6
WP_106650490.1\|3003820_3007090_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_157825776.1\|3007129_3007312_+	hypothetical protein	NA	NA	NA	NA
WP_106650492.1\|3008435_3008702_-	EexN family lipoprotein	NA	NA	NA	NA
WP_106650493.1\|3009157_3010270_-	hypothetical protein	NA	NA	NA	NA
WP_106650494.1\|3010276_3010564_-	hypothetical protein	NA	NA	NA	NA
WP_157825777.1\|3010565_3011978_-	hypothetical protein	NA	NA	NA	NA
WP_106650496.1\|3012288_3012510_-	hypothetical protein	NA	NA	NA	NA
WP_106650497.1\|3012810_3013116_-	hypothetical protein	NA	NA	NA	NA
WP_157825778.1\|3013125_3014403_-	DNA replication protein	J7I3Z6	Enterobacteria_phage	1.0e-79	40.2
WP_106651823.1\|3014534_3014729_+	hypothetical protein	NA	NA	NA	NA
WP_106650499.1\|3015035_3015287_+	hypothetical protein	NA	NA	NA	NA
WP_106650492.1\|3015481_3015748_-	EexN family lipoprotein	NA	NA	NA	NA
WP_106650493.1\|3016203_3017316_-	hypothetical protein	NA	NA	NA	NA
WP_106650494.1\|3017322_3017610_-	hypothetical protein	NA	NA	NA	NA
WP_157825777.1\|3017611_3019024_-	hypothetical protein	NA	NA	NA	NA
WP_106650496.1\|3019334_3019556_-	hypothetical protein	NA	NA	NA	NA
WP_106650497.1\|3019856_3020162_-	hypothetical protein	NA	NA	NA	NA
WP_157825778.1\|3020171_3021449_-	DNA replication protein	J7I3Z6	Enterobacteria_phage	1.0e-79	40.2
WP_106651823.1\|3021580_3021775_+	hypothetical protein	NA	NA	NA	NA
WP_106650500.1\|3022120_3022363_+	hypothetical protein	NA	NA	NA	NA
WP_106650501.1\|3022621_3023065_-	hypothetical protein	NA	NA	NA	NA
WP_106650502.1\|3023312_3023498_-	hypothetical protein	NA	NA	NA	NA
WP_106650503.1\|3023976_3025590_+	MATE family efflux transporter	NA	NA	NA	NA
WP_106650504.1\|3025586_3026150_+	hypothetical protein	NA	NA	NA	NA
WP_106650505.1\|3026529_3027801_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.1e-16	24.8
WP_106650506.1\|3027916_3028819_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_106651753.1\|3028961_3030083_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_106650507.1\|3030484_3031144_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.9e-34	44.3
WP_106650508.1\|3031213_3031603_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.1e-18	38.6
WP_106650509.1\|3031617_3031974_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_106650510.1\|3031973_3032255_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_006081642.1\|3032248_3032587_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_006081643.1\|3032731_3032854_-	hypothetical protein	NA	NA	NA	NA
WP_106650511.1\|3032873_3034160_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.2e-100	46.0
WP_106650512.1\|3034178_3034553_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.4e-05	36.0
WP_106650513.1\|3034545_3035877_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.5e-78	39.3
WP_011846837.1\|3035885_3036512_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_106650514.1\|3036568_3039322_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	1.9e-83	48.5

DBSCAN-SWA_5

3255158 : 3262337

Megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006081848.1\|3255158_3255590_-	nucleoside-diphosphate kinase	K7YW26	Megavirus	1.1e-17	40.2
WP_106650660.1\|3255787_3255955_-	hypothetical protein	NA	NA	NA	NA
WP_106650661.1\|3256172_3256370_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_006081851.1\|3256483_3257389_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	9.4e-40	33.6
WP_006081852.1\|3257546_3257885_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_106650662.1\|3257893_3259756_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.6e-102	38.3
WP_106650663.1\|3259822_3260347_-	co-chaperone HscB	NA	NA	NA	NA
WP_006081855.1\|3260363_3260687_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.8e-22	46.3
WP_011072277.1\|3260701_3261085_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.0e-51	77.4
WP_106650664.1\|3261122_3262337_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.3e-31	30.9

DBSCAN-SWA_6

4026887 : 4098952

Vibrio_phage(15.38%)

integrase,transposase,holin,portal

attL 4035562:4035576|attR 4099056:4099070

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011790968.1\|4026887_4028138_+\|transposase	IS4-like element IS10A family transposase	Q9E8P4	Bluetongue_virus	4.2e-171	71.4
WP_106651143.1\|4028188_4028854_-	hypothetical protein	NA	NA	NA	NA
WP_106651144.1\|4029314_4030826_-	hypothetical protein	NA	NA	NA	NA
WP_106651145.1\|4031303_4032659_-	MATE family efflux transporter	NA	NA	NA	NA
WP_106651146.1\|4033059_4034601_+	MFS transporter	NA	NA	NA	NA
WP_106651147.1\|4034702_4035227_-	DUF3087 domain-containing protein	NA	NA	NA	NA
4035562:4035576	attL	NA	NA	NA	NA
WP_106651148.1\|4035618_4036380_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_106651149.1\|4036506_4037613_-	GTP-binding protein	NA	NA	NA	NA
WP_106651150.1\|4037840_4039259_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.5e-55	33.4
WP_106651151.1\|4039388_4042436_-	EAL domain-containing protein	G3MA91	Bacillus_virus	5.4e-23	37.5
WP_106651152.1\|4042572_4044186_-	glycogen synthase	NA	NA	NA	NA
WP_006080859.1\|4044272_4045535_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_106651153.1\|4045725_4048257_-	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	1.4e-16	43.7
WP_106651859.1\|4048268_4050446_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_106651860.1\|4050471_4052700_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_106651154.1\|4052833_4055260_-	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_106651155.1\|4055825_4056455_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.4e-13	34.8
WP_006080852.1\|4056582_4057059_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_106651156.1\|4057161_4057866_-	hypothetical protein	NA	NA	NA	NA
WP_106651157.1\|4057880_4059098_-\|holin	choline transporter	NA	NA	NA	NA
WP_106651158.1\|4059473_4061159_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	2.4e-49	28.4
WP_106651159.1\|4061168_4062632_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_006080847.1\|4062622_4063228_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_106651160.1\|4063838_4064987_+	L-threonine dehydrogenase	NA	NA	NA	NA
WP_028760718.1\|4065835_4066201_+	hypothetical protein	NA	NA	NA	NA
WP_106651161.1\|4066488_4066695_+	hypothetical protein	NA	NA	NA	NA
WP_006080843.1\|4066775_4067144_-	acyl-CoA thioesterase	A0A292GK23	Xanthomonas_phage	5.5e-31	54.7
WP_012588215.1\|4067692_4069018_-	isocitrate lyase	NA	NA	NA	NA
WP_106651162.1\|4069158_4070808_-	malate synthase A	NA	NA	NA	NA
WP_106651163.1\|4071668_4074110_+	TonB-dependent receptor	NA	NA	NA	NA
WP_106651164.1\|4074201_4075971_-\|portal	portal protein	NA	NA	NA	NA
WP_106651165.1\|4076311_4078057_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_063882706.1\|4078105_4078321_-	hypothetical protein	NA	NA	NA	NA
WP_106651166.1\|4078379_4079171_-	hypothetical protein	NA	NA	NA	NA
WP_106651861.1\|4079589_4080081_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_106651167.1\|4080195_4080528_-	RnfH family protein	NA	NA	NA	NA
WP_028760728.1\|4080517_4080955_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_011790147.1\|4081233_4081725_+	SsrA-binding protein SmpB	NA	NA	NA	NA
WP_106651168.1\|4082420_4083668_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.1e-115	49.9
WP_106651169.1\|4083719_4084781_-	macro domain-containing protein	A0A0B4N0V6	Escherichia_phage	1.2e-14	37.5
WP_106651170.1\|4084789_4085395_-	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_106651171.1\|4085549_4086230_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_106651172.1\|4086229_4090216_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	4.9e-64	26.1
WP_106651173.1\|4090278_4091526_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_106651174.1\|4091518_4094188_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	2.9e-73	35.2
WP_106651175.1\|4094278_4095214_-	restriction endonuclease	NA	NA	NA	NA
WP_106651862.1\|4095947_4096145_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	6.4e-10	45.9
WP_106651863.1\|4096320_4096785_+	DNA repair protein RadC	NA	NA	NA	NA
WP_106651176.1\|4096825_4097188_+	hypothetical protein	NA	NA	NA	NA
WP_106651177.1\|4097330_4097711_+	hypothetical protein	NA	NA	NA	NA
WP_106651178.1\|4097855_4098269_+	DUF2787 domain-containing protein	NA	NA	NA	NA
WP_106651864.1\|4098391_4098952_+\|integrase	tyrosine-type recombinase/integrase	W8CYP1	Bacillus_phage	5.3e-17	30.8
4099056:4099070	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4162345 : 4173528

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106651214.1\|4162345_4164970_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.8e-78	39.1
WP_106651215.1\|4165399_4165813_-	regulatory protein RecX	NA	NA	NA	NA
WP_106651216.1\|4165887_4166955_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.1e-111	62.2
WP_106651217.1\|4167357_4169928_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	3.0e-30	23.1
WP_106651218.1\|4170088_4171069_-	RNA polymerase sigma factor RpoS	M4SMP8	Cyanophage	8.4e-34	32.7
WP_106651219.1\|4171149_4172046_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_012197442.1\|4172146_4172782_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.4e-34	49.4
WP_106651220.1\|4172778_4173528_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-71	52.7

DBSCAN-SWA_8

4203502 : 4211070

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006082639.1\|4203502_4203982_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-30	47.0
WP_006082640.1\|4204112_4205216_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.5e-68	39.7
WP_106651244.1\|4205311_4205968_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.6e-27	34.0
WP_106651867.1\|4206035_4207178_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.0e-50	35.2
WP_006082643.1\|4207309_4207759_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_106651245.1\|4207959_4209213_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	7.0e-102	53.4
WP_106651246.1\|4209402_4211070_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	5.1e-39	28.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015194

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection