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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021390 Bifidobacterium breve strain DRBB26 chromosome, complete genome 5 crisprs cas3,WYL 1 2 2 0

Results visualization

1. NZ_CP021390
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021390_1 136374-136710 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021390_2 1115368-1115453 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021390_3 1249863-1250041 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021390_4 2122888-2123034 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021390_5 2278214-2278290 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP021390_4 4.1|2122913|36|NZ_CP021390|CRISPRCasFinder 2122913-2122948 36 NZ_CP021390.1 2124250-2124285 2 0.944

1. spacer 4.1|2122913|36|NZ_CP021390|CRISPRCasFinder matches to position: 2124250-2124285, mismatch: 2, identity: 0.944

tcaaagccagtgacagaaatttaggaaatcaacccc	CRISPR spacer
tcaaagccaatgacagatatttaggaaatcaacccc	Protospacer
*********.******* ******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021390_1 1.4|136555|27|NZ_CP021390|CRISPRCasFinder 136555-136581 27 MK512531 Xanthomonas phage Cf2, complete genome 785-811 5 0.815
NZ_CP021390_1 1.1|136399|27|NZ_CP021390|CRISPRCasFinder 136399-136425 27 NC_010580 Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01, complete sequence 89156-89182 7 0.741

1. spacer 1.4|136555|27|NZ_CP021390|CRISPRCasFinder matches to MK512531 (Xanthomonas phage Cf2, complete genome) position: , mismatch: 5, identity: 0.815

ggttgcggatggtgcggagcccccatg----	CRISPR spacer
gcttgcggatggtgcggagcc----tggtgc	Protospacer
* *******************    **    

2. spacer 1.1|136399|27|NZ_CP021390|CRISPRCasFinder matches to NC_010580 (Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01, complete sequence) position: , mismatch: 7, identity: 0.741

cgttgttagcggtacttttttaccagc	CRISPR spacer
gctggttagcggtacttttttacagat	Protospacer
  * ******************* ...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 776364 : 822592 36 Streptococcus_phage(33.33%) transposase,protease NA
DBSCAN-SWA_2 1249276 : 1260255 12 Bifidobacterium_phage(77.78%) portal,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage