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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021391 Bifidobacterium breve strain NRBB50 chromosome, complete genome 5 crisprs DEDDh,cas3,c2c9_V-U4,WYL 1 7 4 0

Results visualization

1. NZ_CP021391
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021391_1 152207-152543 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021391_2 738187-738260 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021391_3 1789076-1789851 Orphan I-C
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021391_4 2129238-2129384 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021391_5 2292407-2292483 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP021391_4 4.1|2129263|36|NZ_CP021391|CRISPRCasFinder 2129263-2129298 36 NZ_CP021391.1 2130600-2130635 0 1.0

1. spacer 4.1|2129263|36|NZ_CP021391|CRISPRCasFinder matches to position: 2130600-2130635, mismatch: 0, identity: 1.0

tcaaagccaatgacagatatttaggaaaccaacccc	CRISPR spacer
tcaaagccaatgacagatatttaggaaaccaacccc	Protospacer
************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021391_1 1.1|152232|27|NZ_CP021391|CRISPRCasFinder 152232-152258 27 NZ_CP040452 Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence 1743549-1743575 6 0.778
NZ_CP021391_3 3.11|1789785|33|NZ_CP021391|CRISPRCasFinder 1789785-1789817 33 JQ680367 Unidentified phage clone 2203_scaffold802 genomic sequence 33341-33373 7 0.788
NZ_CP021391_3 3.11|1789785|33|NZ_CP021391|CRISPRCasFinder 1789785-1789817 33 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 889495-889527 7 0.788
NZ_CP021391_3 3.19|1789583|34|NZ_CP021391|CRT,PILER-CR 1789583-1789616 34 NZ_CP017887 Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence 231055-231088 7 0.794
NZ_CP021391_3 3.22|1789784|34|NZ_CP021391|CRT,PILER-CR 1789784-1789817 34 JQ680367 Unidentified phage clone 2203_scaffold802 genomic sequence 33341-33374 8 0.765
NZ_CP021391_3 3.22|1789784|34|NZ_CP021391|CRT,PILER-CR 1789784-1789817 34 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 889494-889527 8 0.765
NZ_CP021391_3 3.8|1789584|33|NZ_CP021391|CRISPRCasFinder 1789584-1789616 33 NZ_CP017887 Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence 231055-231087 9 0.727
NZ_CP021391_3 3.11|1789785|33|NZ_CP021391|CRISPRCasFinder 1789785-1789817 33 NZ_CP015741 Shinella sp. HZN7 plasmid pShin-05, complete sequence 103966-103998 9 0.727
NZ_CP021391_3 3.4|1789315|33|NZ_CP021391|CRISPRCasFinder 1789315-1789347 33 NZ_CP049157 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence 1684394-1684426 10 0.697
NZ_CP021391_3 3.4|1789315|33|NZ_CP021391|CRISPRCasFinder 1789315-1789347 33 NZ_CP049317 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence 1950644-1950676 10 0.697
NZ_CP021391_3 3.11|1789785|33|NZ_CP021391|CRISPRCasFinder 1789785-1789817 33 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 1530504-1530536 10 0.697
NZ_CP021391_3 3.22|1789784|34|NZ_CP021391|CRT,PILER-CR 1789784-1789817 34 NZ_CP015741 Shinella sp. HZN7 plasmid pShin-05, complete sequence 103965-103998 10 0.706
NZ_CP021391_3 3.15|1789314|34|NZ_CP021391|CRT,PILER-CR 1789314-1789347 34 NZ_CP049157 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence 1684394-1684427 11 0.676
NZ_CP021391_3 3.15|1789314|34|NZ_CP021391|CRT,PILER-CR 1789314-1789347 34 NZ_CP049317 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence 1950643-1950676 11 0.676
NZ_CP021391_3 3.22|1789784|34|NZ_CP021391|CRT,PILER-CR 1789784-1789817 34 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 1530504-1530537 11 0.676

1. spacer 1.1|152232|27|NZ_CP021391|CRISPRCasFinder matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

cgttgttagcggtgcttctttaccagc	CRISPR spacer
cgctgttagcggtgctgctttacgcca	Protospacer
**.************* ******    

2. spacer 3.11|1789785|33|NZ_CP021391|CRISPRCasFinder matches to JQ680367 (Unidentified phage clone 2203_scaffold802 genomic sequence) position: , mismatch: 7, identity: 0.788

ccccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
gccatagccgatattcaggccgatttcgtcacg	Protospacer
 ** *   ****.*** ****************

3. spacer 3.11|1789785|33|NZ_CP021391|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.788

ccccttcgcgatgttctggccgatttcgtcacg-	CRISPR spacer
aacatttgcgatgctctggccgatttcg-cgcgc	Protospacer
  * **.******.************** *.** 

4. spacer 3.19|1789583|34|NZ_CP021391|CRT,PILER-CR matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

atccg--ggtgtgattttgaagaccctgcttgacga	CRISPR spacer
--ccggcgaggtgattttgatgaccctgcttggcgg	Protospacer
  ***  *. ********** ***********.**.

5. spacer 3.22|1789784|34|NZ_CP021391|CRT,PILER-CR matches to JQ680367 (Unidentified phage clone 2203_scaffold802 genomic sequence) position: , mismatch: 8, identity: 0.765

accccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
cgccatagccgatattcaggccgatttcgtcacg	Protospacer
  ** *   ****.*** ****************

6. spacer 3.22|1789784|34|NZ_CP021391|CRT,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.765

accccttcgcgatgttctggccgatttcgtcacg-	CRISPR spacer
caacatttgcgatgctctggccgatttcg-cgcgc	Protospacer
   * **.******.************** *.** 

7. spacer 3.8|1789584|33|NZ_CP021391|CRISPRCasFinder matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tccgggtgtgattttgaagaccctgcttgacga	CRISPR spacer
cggcgaggtgattttgatgaccctgcttggcgg	Protospacer
.   *. ********** ***********.**.

8. spacer 3.11|1789785|33|NZ_CP021391|CRISPRCasFinder matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 9, identity: 0.727

ccccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
tagccgcgcgatgtcctggccgatttcgtcgat	Protospacer
.  *. ********.***************.  

9. spacer 3.4|1789315|33|NZ_CP021391|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 10, identity: 0.697

tccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
tccggtgcctgctcacaaggacagacgaagctc	Protospacer
****.******** **********. .*.  ..

10. spacer 3.4|1789315|33|NZ_CP021391|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 10, identity: 0.697

tccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
tccggtgcctgctcacaaggacagacgaagctc	Protospacer
****.******** **********. .*.  ..

11. spacer 3.11|1789785|33|NZ_CP021391|CRISPRCasFinder matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.697

ccccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
gtacttcgcgctgtgctggccgatttcgctctt	Protospacer
 . ******* *** *************.. . 

12. spacer 3.22|1789784|34|NZ_CP021391|CRT,PILER-CR matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 10, identity: 0.706

accccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
gtagccgcgcgatgtcctggccgatttcgtcgat	Protospacer
..  *. ********.***************.  

13. spacer 3.15|1789314|34|NZ_CP021391|CRT,PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
ttccggtgcctgctcacaaggacagacgaagctc	Protospacer
 ****.******** **********. .*.  ..

14. spacer 3.15|1789314|34|NZ_CP021391|CRT,PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
ttccggtgcctgctcacaaggacagacgaagctc	Protospacer
 ****.******** **********. .*.  ..

15. spacer 3.22|1789784|34|NZ_CP021391|CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 11, identity: 0.676

accccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
tgtacttcgcgctgtgctggccgatttcgctctt	Protospacer
  . ******* *** *************.. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 313682 : 376422 54 Microbacterium_phage(20.0%) integrase,portal,holin,transposase,tail,tRNA attL 332501:332517|attR 376098:376114
DBSCAN-SWA_2 390057 : 446343 65 Bifidobacterium_phage(31.58%) integrase,protease,portal,terminase,holin,tail attL 411310:411326|attR 439354:439370
DBSCAN-SWA_3 960508 : 1088566 102 Agrobacterium_phage(14.81%) protease,transposase,integrase attL 960412:960471|attR 963807:963907
DBSCAN-SWA_4 2270717 : 2362569 60 Paenibacillus_phage(22.22%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage