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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021393 Bifidobacterium breve strain NRBB52 chromosome, complete genome 6 crisprs cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5 0 14 3 0

Results visualization

1. NZ_CP021393
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021393_1 136229-136565 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021393_2 414783-415087 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021393_3 1210208-1210386 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021393_4 1691346-1691923 TypeI I-C
8 spacers
cas2,cas1,cas4

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021393_5 1702130-1705157 TypeI I-C:NA
44 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021393_6 2213370-2213454 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021393_5 5.3|1702300|35|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder 1702300-1702334 35 NZ_KM406416 Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence 88215-88249 0 1.0
NZ_CP021393_5 5.4|1702368|33|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder 1702368-1702400 33 NZ_KM406416 Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence 171031-171063 2 0.939
NZ_CP021393_2 2.2|414863|25|NZ_CP021393|CRISPRCasFinder 414863-414887 25 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 158326-158350 4 0.84
NZ_CP021393_2 2.4|414980|25|NZ_CP021393|CRISPRCasFinder 414980-415004 25 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 158326-158350 4 0.84
NZ_CP021393_1 1.1|136254|27|NZ_CP021393|CRISPRCasFinder 136254-136280 27 NZ_CP040452 Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence 1743549-1743575 6 0.778
NZ_CP021393_2 2.1|414806|34|NZ_CP021393|CRISPRCasFinder 414806-414839 34 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 139667-139700 6 0.824
NZ_CP021393_5 5.34|1704415|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704415-1704447 33 NZ_CP030864 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence 125521-125553 6 0.818
NZ_CP021393_2 2.1|414806|34|NZ_CP021393|CRISPRCasFinder 414806-414839 34 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 1786163-1786196 7 0.794
NZ_CP021393_5 5.8|1702636|34|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder 1702636-1702669 34 MN693988 Marine virus AFVG_250M765, complete genome 17696-17729 7 0.794
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP021653 Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence 675842-675874 7 0.788
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP012688 Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence 675851-675883 7 0.788
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 CP047139 Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence 695150-695182 7 0.788
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 CP047137 Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence 661868-661900 7 0.788
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP050104 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence 781086-781118 7 0.788
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP025507 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence 559931-559963 7 0.788
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP050109 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence 781086-781118 7 0.788
NZ_CP021393_5 5.4|1702368|33|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder 1702368-1702400 33 NC_013856 Azospirillum sp. B510 plasmid pAB510b, complete sequence 123793-123825 8 0.758
NZ_CP021393_5 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1703472-1703504 33 NZ_CP032928 Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence 361455-361487 8 0.758
NZ_CP021393_5 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1703472-1703504 33 NZ_CP011248 Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence 179802-179834 8 0.758
NZ_CP021393_5 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1703472-1703504 33 NZ_CP032919 Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence 179563-179595 8 0.758
NZ_CP021393_5 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1703472-1703504 33 NZ_CP033029 Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence 179647-179679 8 0.758
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP035002 Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence 825570-825602 8 0.758
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 599676-599708 8 0.758
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP021033 Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence 687685-687717 8 0.758
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP020399 Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence 424697-424729 8 0.758
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 2010052-2010084 8 0.758
NZ_CP021393_2 2.1|414806|34|NZ_CP021393|CRISPRCasFinder 414806-414839 34 NC_016654 Rhodococcus phage REQ3, complete genome 8845-8878 9 0.735
NZ_CP021393_5 5.8|1702636|34|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder 1702636-1702669 34 MN693286 Marine virus AFVG_25M92, complete genome 1154-1187 9 0.735
NZ_CP021393_5 5.15|1703109|33|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder 1703109-1703141 33 NZ_CP033873 Caulobacter sp. FWC26 plasmid p1, complete sequence 158087-158119 9 0.727
NZ_CP021393_5 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1703472-1703504 33 NZ_LN907828 Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence 143666-143698 9 0.727
NZ_CP021393_5 5.40|1704819|35|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704819-1704853 35 NC_006569 Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence 75026-75060 9 0.743
NZ_CP021393_2 2.1|414806|34|NZ_CP021393|CRISPRCasFinder 414806-414839 34 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 671609-671642 10 0.706
NZ_CP021393_2 2.1|414806|34|NZ_CP021393|CRISPRCasFinder 414806-414839 34 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 1652187-1652220 10 0.706
NZ_CP021393_5 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1703472-1703504 33 NZ_CP019949 Methylocystis bryophila strain S285 plasmid p1, complete sequence 100095-100127 10 0.697
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP015867 Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence 342977-343009 10 0.697
NZ_CP021393_5 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704280-1704312 33 NZ_CP024940 Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence 122789-122821 10 0.697
NZ_CP021393_2 2.1|414806|34|NZ_CP021393|CRISPRCasFinder 414806-414839 34 NZ_CP048421 Sphingomonas insulae strain KCTC 12872 plasmid unnamed3, complete sequence 166344-166377 11 0.676
NZ_CP021393_4 4.5|1691653|34|NZ_CP021393|CRISPRCasFinder 1691653-1691686 34 NZ_CP049157 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence 1684394-1684427 11 0.676
NZ_CP021393_4 4.5|1691653|34|NZ_CP021393|CRISPRCasFinder 1691653-1691686 34 NZ_CP049317 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence 1950643-1950676 11 0.676
NZ_CP021393_5 5.8|1702636|34|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder 1702636-1702669 34 NC_021209 Sinorhizobium sp. M14 plasmid pSinA, complete sequence 81518-81551 11 0.676
NZ_CP021393_5 5.29|1704078|34|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR 1704078-1704111 34 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 60521-60554 11 0.676

1. spacer 5.3|1702300|35|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 0, identity: 1.0

tcagcgttcctggaaaggccggaactccacttcca	CRISPR spacer
tcagcgttcctggaaaggccggaactccacttcca	Protospacer
***********************************

2. spacer 5.4|1702368|33|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 2, identity: 0.939

cgggcgcatcggcacctgggtgtggacgatcat	CRISPR spacer
cgggcgcatcggcacctgggtgtgggcgatcct	Protospacer
*************************.***** *

3. spacer 2.2|414863|25|NZ_CP021393|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 4, identity: 0.84

cgatttcgaggatgactacgaggat	CRISPR spacer
cgatttcgaggatgactgcgagcgc	Protospacer
*****************.**** ..

4. spacer 2.4|414980|25|NZ_CP021393|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 4, identity: 0.84

cgatttcgaggatgactacgaggat	CRISPR spacer
cgatttcgaggatgactgcgagcgc	Protospacer
*****************.**** ..

5. spacer 1.1|136254|27|NZ_CP021393|CRISPRCasFinder matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

cgttgttagcggtgcttctttaccagc	CRISPR spacer
cgctgttagcggtgctgctttacgcca	Protospacer
**.************* ******    

6. spacer 2.1|414806|34|NZ_CP021393|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.824

ccgtg-acgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
-cgtgcgcggacgcgacttcaccgatcgcgacgac	Protospacer
 **** .**. *********. *************

7. spacer 5.34|1704415|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.818

gcggtgttcgccatgccccaggtg-tggtggcga	CRISPR spacer
gcggtgcgcgccatgccccaggtgatgacgacg-	Protospacer
******. **************** **..*.** 

8. spacer 2.1|414806|34|NZ_CP021393|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.794

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
gcgtggccatcgcgacttcgacgatcgtgctgcc	Protospacer
 ****.* *******************.* .* *

9. spacer 5.8|1702636|34|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder matches to MN693988 (Marine virus AFVG_250M765, complete genome) position: , mismatch: 7, identity: 0.794

ccatgatttacttctccttttcttcggtggcttt	CRISPR spacer
ccatgatttacttctcctattattataatgcttt	Protospacer
****************** ** **  .  *****

10. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
accccgagggcgaaccggtcgccgcgccggcgg	Protospacer
*. * .*********. ************** *

11. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
accccgagggcgaaccggtcgccgcgccggcgg	Protospacer
*. * .*********. ************** *

12. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
accccgagggcgaaccggtcgccgcgccggcgg	Protospacer
*. * .*********. ************** *

13. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
accccgagggcgaaccggtcgccgcgccggcgg	Protospacer
*. * .*********. ************** *

14. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 7, identity: 0.788

atgcgaagggcgaactcgtcgccgc-gccggccg	CRISPR spacer
gagccatgggcgaactcgtcgccgcggcccgtc-	Protospacer
. ** * ****************** *** *.* 

15. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 7, identity: 0.788

atgcgaagggcgaactcgtcgccgc-gccggccg	CRISPR spacer
gagccatgggcgaactcgtcgccgcggcccgtc-	Protospacer
. ** * ****************** *** *.* 

16. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 7, identity: 0.788

atgcgaagggcgaactcgtcgccgc-gccggccg	CRISPR spacer
gagccatgggcgaactcgtcgccgcggcccgtc-	Protospacer
. ** * ****************** *** *.* 

17. spacer 5.4|1702368|33|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

cgggcgcatcggcacctgggtgtggacgatcat	CRISPR spacer
ctcgctgatcgtcacctgggtgttgacgatctc	Protospacer
*  **  **** *********** ******* .

18. spacer 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032928 (Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence) position: , mismatch: 8, identity: 0.758

gtccatcgtcgcgcgtgatgttgcgcacgtcca	CRISPR spacer
cgccatggtcgcgcgtgatcttgcgcaggccgt	Protospacer
  **** ************ ******* *.*  

19. spacer 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP011248 (Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence) position: , mismatch: 8, identity: 0.758

gtccatcgtcgcgcgtgatgttgcgcacgtcca	CRISPR spacer
cgccatggtcgcgcgtgatcttgcgcaggccgt	Protospacer
  **** ************ ******* *.*  

20. spacer 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 8, identity: 0.758

gtccatcgtcgcgcgtgatgttgcgcacgtcca	CRISPR spacer
cgccatggtcgcgcgtgatcttgcgcaggccgt	Protospacer
  **** ************ ******* *.*  

21. spacer 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 8, identity: 0.758

gtccatcgtcgcgcgtgatgttgcgcacgtcca	CRISPR spacer
cgccatggtcgcgcgtgatcttgcgcaggccgt	Protospacer
  **** ************ ******* *.*  

22. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 8, identity: 0.758

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
gagccatgggcgaactcgtcgccgcgcccggtc	Protospacer
. ** * ********************* * . 

23. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.758

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
accagcagggcgaactcgtcgccgcccaggcgc	Protospacer
*.  * ******************* * ***  

24. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 8, identity: 0.758

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
gagccgtgcgcgaactcgtcgccgccgcggccg	Protospacer
. ** . * ****************  ******

25. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
tcgagcaccgcgatgtcgtcgccgcgccggccg	Protospacer
 .* * *  ****  ******************

26. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.758

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
ccgccatgggcgaactcgtcgccgcgtccggtg	Protospacer
 .** * *******************.* * .*

27. spacer 2.1|414806|34|NZ_CP021393|CRISPRCasFinder matches to NC_016654 (Rhodococcus phage REQ3, complete genome) position: , mismatch: 9, identity: 0.735

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
ccgtgacgaccgcgacctcgacgacgacaccacc	Protospacer
*********.******.*******. .*. *. *

28. spacer 5.8|1702636|34|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.735

ccatgatttacttctccttttcttcggtggcttt	CRISPR spacer
acataatttaattctccttttcttctaaagtttc	Protospacer
 ***.***** ************** . .*.**.

29. spacer 5.15|1703109|33|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033873 (Caulobacter sp. FWC26 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.727

gacaacaaggtggacgcggtcacg---caagtcgtg	CRISPR spacer
gacaacaatgtcgacgcggtcacgacctggatc---	Protospacer
******** ** ************   ....**   

30. spacer 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 9, identity: 0.727

gtccatcgtcgcgcgtgatgttgcgcacgtcca	CRISPR spacer
catcatcgtggcgcgtgatattgcgcatgcgaa	Protospacer
  .****** *********.*******.*.  *

31. spacer 5.40|1704819|35|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.743

tgttccagccggtgcttgaggatgacggcaccgat	CRISPR spacer
aggcgcagcaggtgctggaggatgacggcaaggac	Protospacer
 * . **** ****** *************  **.

32. spacer 2.1|414806|34|NZ_CP021393|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.706

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
cttttgtccccgcgacttcgacgatggcgtcgac	Protospacer
*. * ..  .*************** *** ****

33. spacer 2.1|414806|34|NZ_CP021393|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 10, identity: 0.706

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
cttttgtccccgcgacttcgacgatggcgtcgac	Protospacer
*. * ..  .*************** *** ****

34. spacer 5.20|1703472|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP019949 (Methylocystis bryophila strain S285 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.697

gtccatcgtcgcgcgtgatgttgcgcacgtcca	CRISPR spacer
ggaactcgtcgagcgtgatgttgcgcccgaagt	Protospacer
*    ****** ************** **    

35. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 10, identity: 0.697

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
gccaccagggcgacctcgtggccgcgccggtcc	Protospacer
..    ******* ***** **********.* 

36. spacer 5.32|1704280|33|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.697

atgcgaagggcgaactcgtcgccgcgccggccg	CRISPR spacer
agctacgccgcgaactcggcgccgcgcaggccg	Protospacer
*  .. .  ********* ******** *****

37. spacer 2.1|414806|34|NZ_CP021393|CRISPRCasFinder matches to NZ_CP048421 (Sphingomonas insulae strain KCTC 12872 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
tcaaagcgatcgcgaccacgacgatcgcgatcgg	Protospacer
.*. ..**********. ************. . 

38. spacer 4.5|1691653|34|NZ_CP021393|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
ttccggtgcctgctcacaaggacagacgaagctc	Protospacer
 ****.******** **********. .*.  ..

39. spacer 4.5|1691653|34|NZ_CP021393|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
ttccggtgcctgctcacaaggacagacgaagctc	Protospacer
 ****.******** **********. .*.  ..

40. spacer 5.8|1702636|34|NZ_CP021393|CRT,PILER-CR,CRISPRCasFinder matches to NC_021209 (Sinorhizobium sp. M14 plasmid pSinA, complete sequence) position: , mismatch: 11, identity: 0.676

ccatgatttacttctccttttcttcggtggcttt	CRISPR spacer
ccatgacttccttctccttttcttgaagaccgcg	Protospacer
******.** ************** .. . * . 

41. spacer 5.29|1704078|34|NZ_CP021393|CRT,CRISPRCasFinder,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.676

gcatgctccacgacgccgccaacctcaactactg	CRISPR spacer
tttccctccgcgacgccggcaacctcaaccatat	Protospacer
 . . ****.******** **********.*.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 299919 : 351711 44 Mycobacterium_phage(25.0%) tRNA,holin,integrase,transposase attL 341823:341839|attR 351749:351765
DBSCAN-SWA_2 1201280 : 1239923 55 Bifidobacterium_phage(50.0%) portal,tail,integrase,terminase,coat,holin attL 1201712:1201729|attR 1246643:1246660
DBSCAN-SWA_3 1642308 : 1715953 57 Lactococcus_phage(16.67%) tRNA,protease,integrase,transposase attL 1691891:1691933|attR 1702401:1702443
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage