CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021557	Bifidobacterium breve strain 180W83 chromosome, complete genome	4 crisprs	cas3,WYL	3	4	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021557_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021557_1

1189383-1189561

Orphan

Consensus_repeat	Method
CCGGTTTTCGGGTCGATGGTGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP021557_1

>merge|NZ_CP021557|1|1189383-1189561|CRISPRCasFinder
CCGGTTTTCGAGTCGATGGTCCAGCCGTTCGCTTCGGCCACCTTGGCCAGCATGTCGCTGTTGTCCCCCTGCAGCAACCCGGTTTTCGGGTCGATGGTGGCACCTGCGGCGATGGCCATCGCATAATCGAACTGGGTCTTGTCCAGATCGAGTTTGCCGGTTTTCGGGTCGATGGTGGC

>NZ_CP021557|1|1|1189383-1189561|CRISPRCasFinder
CCGGTTTTCGAGTCGATGGTCCA	GCCGTTCGCTTCGGCCACCTTGGCCAGCATGTCGCTGTTGTCCCCCTGCAGCAAC
CCGGTTTTCGGGTCGATGGTGGC	ACCTGCGGCGATGGCCATCGCATAATCGAACTGGGTCTTGTCCAGATCGAGTTTG
CCGGTTTTCGGGTCGATGGTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021557.1\|WP_016462998.1\|1194599_1195022_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_052829194.1\|1182447_1185681_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP021557.1\|WP_060618564.1\|1180575_1181265_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_106630941.1\|1195667_1196525_-\|coat-protein	unknown	unknown	gnl\|CDD\|275180
NZ_CP021557.1\|WP_077149488.1\|1181261_1181699_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377400
NZ_CP021557.1\|WP_016463000.1\|1193795_1194212_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_106631079.1\|1197179_1198340_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_016463002.1\|1192519_1193014_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_052829195.1\|1182132_1182429_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_106622479.1\|1194208_1194598_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_016462997.1\|1195018_1195603_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_143246996.1\|1179411_1179603_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_143247959.1\|1181734_1182103_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_016463003.1\|1192151_1192448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_052829189.1\|1193189_1193723_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_052829192.1\|1186899_1187844_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_052829193.1\|1185691_1186900_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_016462995.1\|1196541_1197156_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_052829191.1\|1187903_1188800_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_157824049.1\|1179627_1180497_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|223689

>NZ_CP021557.1|WP_052829191.1|1187903_1188800_-|hypothetical-protein
MSDLWTMYPHFGELYAGGTLICRFNPDDSRSRGLYVTSNGVEGWDTMPDAKVELTERGQGDGAHDVPESDLIYSARTVTVHYEAIGLSRGELLSIMRKINRLAHRNARLRFSDGGEDTYVDGYLAQMGRSSAWHPTLENDLTLHFVCPRPERLSWTPHRCQLKPTSDGRGGLFYGGARAGLVYPLTYGRQATDSRNVGTLLNNGSSRAYPVFTVYGGFDSGVILQFSGGSSIRWTGSVGGTPLVLDCRLGTATMGGRDVSRYLMSRGFPTVQSGGSLSVSLHSAGTGYVDCLVRDTWM
>NZ_CP021557.1|WP_052829192.1|1186899_1187844_-|hypothetical-protein
MATTALGIAPDSSGAGVTPLTHRQIIRAHWANTGIVSGLDVSGRGDLTYSVGAGMAVCSRGDADGYTEAYWAGGQTPAVSATGSQPRIDCIWIRANDPTQGDADNHVVIGVTQGNASATPSVPGVPAGATRIGIRLMPASATSTSGSTMYQSATYAVPSGASLGRLAIARSTADYPIPEDRDPAGKMVYHQLLRIDFAVPTKRLVTVEWKASATVPSGSGDDANKPMGSYFMQIRLDAKVINDTPTTNPTVVGPCDEIMATRYSAPYTVSYDAEVNAGAHQVAVWVAGNADGLTYPVTIHGIHQLRVIDSGVAD
>NZ_CP021557.1|WP_052829193.1|1185691_1186900_-|hypothetical-protein
MSWRAYIADTITGQLIAPIDIPSFAWSISVSDSTLSTTKDKGAGEYDASGLTLPWTSVPGSTPAERVAMLAQDKRSIVLFWKTSLDPQDLGTPILMGSISPRTDSWQDTSFTLNSVMELLDSRILVRENTYGRAANSTTSDEFALHGSWRGIAAQVGYMCTDMKPGGRLPIDWNNRGESGNHSMDFKGFDAGNQSCRQILESIANTENGIDMQFRPYLAGNTVRFSFQAASDGDVHLGQSTVHRLYCRRYGGDLENVTIDHIGPVMRVYAAGAGSDKAQLGYLAEDLSLCLQSDPWPLREMTLSNTDTDKAEQLAASARGNLNANRLPLMQIKGEVNVNDHDSTGLPVNPLGSFWPGERMEIALDGFPGMNDGIYQTRLMQMSGDETAQVKLTFDVMTDPIR
>NZ_CP021557.1|WP_052829194.1|1182447_1185681_-|hypothetical-protein
MAVHTEIVPSGDPALGIGLEALRLARMRMTSNAGSSYWPMGDGTGILAGQQAGDQGLVLVDQHGNRMPLIDTTEISQKADDAMSKANAAVDGMEQVREDAENGVKEAKDAASTAQSTAASAASKADKLATELDGTKAIVERHTTRLGEVETKVSNSVEHADQALSASTQAMQTANSVKTTADRAYDDARSALTQSSTAVQTAGEVKTTLETNYLSKKDSDAAYASKSELKQTSDGITSTVEKTYATKSALEALRNIADNAVETWTGSQKPTASSAPASTWATDQLRKQHAGDVYYDLTSGYSYRWGSTDGKTYAWSLIKDSDITKAIADAAKAQSTANGAQKGVDRLDADIPVTYSTKSELRQTSESLTAKVTEAQRVGQSALDKASTVEQTADGLKATVSEQARTIEGQTTTIGQLTAKADSLTSSLTQTNRNVNIALANSAELIRNPECNSTLGNPDGWDGGMTLSASGAPEGAPVPTYGKFSARDTTTSFRVLRRGRTYRFSAWMAHDSTAKKPAALGCFYHESNGNGRWDAAFRVPTSQSGWKQWSGDLTIPKDAREDAIVWLQIAGALNTAEVTGWYCTLLSIRDVTEAKNAQDTADTAISRASTLEQSLNGFKTTVSQNYETKSDSLAKQSALEQSLNSFKSTVSSTYSTKNELDGLSAMASKTWSFWKDASTSPRRDWVRLGTLTSNGDSSSVQIDVLTGDGWNGAPYQNSRLSIMVKDSWQSSPSTSWAFGVSVLRENCQNAQVRVMALAADECEIWCYLPWQHGSGQYTISGSYKAWSNNTASQSDAPTSGTSQDVAYRLNAEQLRSDVESTYATKSSVEQTATSIKSSVSETYATKTTVQNLSTTLTQTKESLTVSIKQAQTSADTANGNAANAQSRVGSLEACIRMTSSGVRVGQIKNGSFIGYSALVSTSGSFQVIDGNGNKVSELDSGGVFSYVNGRIAWTIREEGETVTFDSNASPLKLESADLFVPRYPKYSSNNHLACPVSGQFKGATNVNGVAVITHNLGYIPTLSITPGPWDGIGEPQGKLFRPVIWDCTTTTAQIRFVRTDTNQWIDRQPVAFHWYAI
>NZ_CP021557.1|WP_052829195.1|1182132_1182429_-|hypothetical-protein
MPDKTTEPAMQVIDLRPPDDGILAQMLRLGLRFDHSDDGSSQSWIDPERQLRADFAGVDAETVVFTDLQTRLCTEVPAANLPRISDIITWQSAQGSED
>NZ_CP021557.1|WP_143247959.1|1181734_1182103_-|hypothetical-protein
MSSPLLLLAMAVIGKLWPDTLPTFSTWLYSHVDPGKLPFDSEMNAHWAQSRELGERLDRFEANQHEVQKDTIKNTLLTLMSDSTRDHSEAIRYELDKLKAINADCWVVDAAEQYLLDRVKRS
>NZ_CP021557.1|WP_077149488.1|1181261_1181699_-|hypothetical-protein
MANTAKADHKATSNMAKLTQERVKAIVLLIVQLFSVVQTGLSLAGISQLPFTSDQVSTAITGVIAVITSIYAWWRNNNITAAAVAGQRITDRVKTGAQSSLTSIDPELMPTAIQLDASGIDPDVLTLMAANAANDTDASDVEESK
>NZ_CP021557.1|WP_060618564.1|1180575_1181265_-|hypothetical-protein
MSRFDQWAASNTGAWRDLDGAYGAQCWDLFCALCVDLMGASVSDCHTARSGKWAGWAGSLYTGFPTTDWIGRHFTRIPASQPGLKGDVILWGGDANHPCTHVAILLADVRPGASPYVLAQNAGATMNARRMWETPASLGYLRPKDRSFITGTTNKENNDMNGLACIVQLNDENGLHYFDGSRLHPLKDPDDVVALNMVAKATIGHDLPALKVGNNRAPFGTRLREAVEG
>NZ_CP021557.1|WP_157824049.1|1179627_1180497_+|S49-family-peptidase
MDEVNSREQNGEESVLDHMIRERIAAFSAKRGRNVICYYSSWLQKPNRDDTGINDLDMNGFMNAVKDMDRSKGLDLVLHTPGGAVAATESVISYLHGCFGRDMVAFVPQLAMSGGTMMACACREIYMGRQSSIGPTDPQFGGTPASGIVEEFQKAVESVRKDPGMAALWGTIIGKYPPAYIGESEKALRVSAEILSKSLKENMFAENPEKVDEVVSRLTSHADSGMHDRHFSIDTARSMGLIVKTLEDDDVIQDMVLSIHHVFMILFHQSNAVKIISSGDHAWVINASN
>NZ_CP021557.1|WP_143246996.1|1179411_1179603_+|hypothetical-protein
MDQETRMEKKLDKHEKQLLNDYRRIVPDAQWNRPSHMSARSLWEACSWNHDAGPTTASNKIGA
>NZ_CP021557.1|WP_016463003.1|1192151_1192448_-|hypothetical-protein
MERDEHRRITGYTPETEWDATEREWMLALDEYEHSLCPQCGMPISVCHDEQTPFHFTADVGICQISLMQSLKLDEWKKDHADENELKQSALTVGIKPR
>NZ_CP021557.1|WP_016463002.1|1192519_1193014_-|hypothetical-protein
MALEVKRKRVDVDLILDQEKAEKVAALGADLERAMAQHVTEGGNAAAKRIAEQIDKLRGEVKDDTVRITLEALPLSQWRQVLEANTVTENGVPKQRIEDICADAVRLMVRKTVPETPVDDLANVMTELSDGQISPIWYAIRDLNAKLIDPKDALESASRIIRRQ
>NZ_CP021557.1|WP_052829189.1|1193189_1193723_-|hypothetical-protein
MTLKLGTEIPGTSADGNITTLWVPTIKDIKAPTMAELEAGTDISNYVMLGGWSFDPSQDAVSDQRENAVQDFGAPGRKSAGDISIEVIDNTNTEHQEQNKAVTLMHEGASGYIVRRRGIATDTPLAVGQKLTVVSVICGEKQVINPDASTMIRSKIPLFAKAPGWESETAEISNPKG
>NZ_CP021557.1|WP_016463000.1|1193795_1194212_-|hypothetical-protein
MSVMDLTNAVLDLLPSMPSGVKVYRQEEPLESEMPPWIIARVSTDRHVAAETMRFTAHSALLEVRAVSTTVDSVNIWCDDMLIPALANRSPTRPSGYTVGQLTLYEDSGAYAAGLTADDTARRYQVRVLRFRFTWSRP
>NZ_CP021557.1|WP_106622479.1|1194208_1194598_-|hypothetical-protein
MTIDASELTSFGRRIAAAHAKASIAVAKAVKKGAQNVKESIQEDVAGSGNAGIRKVQVAYEMGSTGTTVYADVSPRDGGASDLANIAFFGTAKGGGTHDFYEHAETELPTLAEYVGDAADDMLIGAIGL
>NZ_CP021557.1|WP_016462998.1|1194599_1195022_-|hypothetical-protein
MNVQHILNRGRQLAESLMTDQCRVTHMGKPVTDPETGLVAPDVNTVYEGKCKVQTSGGLAAENTEGGIVEALGAVTPVWSMYVHFPYGTTGLLPGDVCELTEAADPNLKGRKLRLLNMQSEKSHATACRWNVKEVGNSNE
>NZ_CP021557.1|WP_016462997.1|1195018_1195603_-|hypothetical-protein
MDTLATIKDLDSYGIEYADEKLADKLLESVSAAVRDAAGCPITRGDYTVTIPGETSRRLDLPMRPVISVSRVLVDGEETGDWKLLGNALYRESLWSLPNMVPCSVTVTMLAGYDPVPPDIVRLVCSMVAAGLVQQSNGGPGAHRDESYARIDDVQIGYRQGDSEIIDALELPEGTKRALRNRFGMRGIAIGVFR
>NZ_CP021557.1|WP_106630941.1|1195667_1196525_-|coat-protein
MAITNFIPELWSANILLELQKNLVYGSAVNRDYEGDIANYGDTVHITGIAHISIGDYTAHTDITIEPATDKDAGELVINQSKYFAFEIDDVEKRQAMNNLTAAYSRDAASKLRDLTDQYLAGLMAAGAKSKLDPISGATATKAYDTIVDLATALDKQNVPDAGRWVIVTPDFYGLLRKDARFVAGAESAHSTLLNGVVGEAAGMTILKSNNAPAAKGGSTQSPTDEGNVIIAGTNAATTFAEQIAKVEATRKEKGFDDIVKGLHLYGAKVVRPEALATVHFKVGK
>NZ_CP021557.1|WP_016462995.1|1196541_1197156_-|hypothetical-protein
MDPANQNQQTGDNESKKPENTGGEDWQSKFEGQRKVNRDLEKKLNEAYAKADKVDELEKQIAALQGKEAEYEAARKEQAVKDEALAAANQRILKAEVRAAASGKLTDPADALRYLDLSKFTVTDDGGVDTQAIADSIGELLEQKPYLGKAEQAPSGANITPPSGTRDGDRHQGQLTRDDLKTMSPAEIVKAQQDGRLKDLLGAN
>NZ_CP021557.1|WP_106631079.1|1197179_1198340_-|hypothetical-protein
MELAADRAARRTWNRVDANNIQASWKSISRDFLTLFSTIQTKSAETAIDASGMMLAEQGVYVTPHALANPNAFAGWAPSGLDIASYFQSPVFAALHAIRTGSSPLEALEYGRNLLVMLTSLAVMDTARQAESLDITSRPKVGYIRVESATCCDRCMLLAGKWFRFNEGFLRHPHCHGRHVPCSHGMAKQQGWISDPMEGFKSLSREEQDKRFGANYAQAIRDGADIYQVVNSKRGMQRVGKGYTALTTSEGTTRYGWANMQYAQQSGRKMKRRLSIDGIYSLTGGDREKTIAALKANGYFVDNDWRGKVPEIRKSMWLHDNTYRQGRVELLTAAEKRVQTAKLRYEAVLEGRNPNDGRMPLTPEIAAQCEREYRRWVTSGGQIFQQ

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Crispr_ID: NZ_CP021557_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021557_2

1676508-1677148

Orphan

I-C

Consensus_repeat	Method
ATTTCAATCCACGCTCCCCGGATGGGGAGCGACA	CRISPRCasFinder
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	PILER-CR

9 spacers

The CRISPR arrays of NZ_CP021557_2

>merge|NZ_CP021557|2|1676508-1677148|CRISPRCasFinder,CRT,PILER-CR
ATAGGAACCCACGCTTCCCAGATGGGGAGCGACGCTGGATTTGAGGGCTGCGCGGGGTATGGGGGCTTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCAGCCCTCAATGCCGGTCTGAGCCTTGCCGTACAGATTTCAATCCACGCTCCCCGAATGGGGAGCGACTGTCCCTCTCCTTAGTACCAGTTGTGGGCGAGCCAATTTCAATCCACGCTCCCCGGATGGGGAGCGACAACGGGATGGGAGCCGTGTTCAACTGGCTGTACCTATTTCAATCCATGCTCCCCGGATGGGGAGCGACAGAATCGGAAGCGTCGTTCCAATCAGATGAAAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACATCCGGGTGTGATTTTGAAGACCCTGCTTGACGAATTTCAATCCACGTTCCCCGGATGGGGAGCGACATACACGTCGCCTTTGCCGTACATTGACGCGTAATTTCAATCCACGCTCCCCGGATGGGGAGCGACACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACACCCCTTCGCGATGTTCTGGCCGATTTCGTCACGATTTCAATCCACGCTCCCCGGATGGGGAGCGACA

>NZ_CP021557|2|2|1676508-1677148|CRISPRCasFinder
ATAGGAACCCACGCTTCCCAGATGGGGAGCGACG	CTGGATTTGAGGGCTGCGCGGGGTATGGGGGCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGACC	AGCCCTCAATGCCGGTCTGAGCCTTGCCGTACAG
ATTTCAATCCACGCTCCCCGAATGGGGAGCGACT	GTCCCTCTCCTTAGTACCAGTTGTGGGCGAGCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGACA	ACGGGATGGGAGCCGTGTTCAACTGGCTGTACCT
ATTTCAATCCATGCTCCCCGGATGGGGAGCGACA	GAATCGGAAGCGTCGTTCCAATCAGATGAAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGACA	TCCGGGTGTGATTTTGAAGACCCTGCTTGACGA
ATTTCAATCCACGTTCCCCGGATGGGGAGCGACA	TACACGTCGCCTTTGCCGTACATTGACGCGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGACA	CGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGACA	CCCCTTCGCGATGTTCTGGCCGATTTCGTCACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGACA

>NZ_CP021557|2|1|1676508-1677147|CRT
ATAGGAACCCACGCTTCCCAGATGGGGAGCGAC	GCTGGATTTGAGGGCTGCGCGGGGTATGGGGGCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGCCCTCAATGCCGGTCTGAGCCTTGCCGTACAG
ATTTCAATCCACGCTCCCCGAATGGGGAGCGAC	TGTCCCTCTCCTTAGTACCAGTTGTGGGCGAGCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AACGGGATGGGAGCCGTGTTCAACTGGCTGTACCT
ATTTCAATCCATGCTCCCCGGATGGGGAGCGAC	AGAATCGGAAGCGTCGTTCCAATCAGATGAAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATCCGGGTGTGATTTTGAAGACCCTGCTTGACGA
ATTTCAATCCACGTTCCCCGGATGGGGAGCGAC	ATACACGTCGCCTTTGCCGTACATTGACGCGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ACCCCTTCGCGATGTTCTGGCCGATTTCGTCACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP021557|2|1|1676577-1677147|PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGCCCTCAATGCCGGTCTGAGCCTTGCCGTACAG
ATTTCAATCCACGCTCCCCGAATGGGGAGCGAC	TGTCCCTCTCCTTAGTACCAGTTGTGGGCGAGCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AACGGGATGGGAGCCGTGTTCAACTGGCTGTACCT
ATTTCAATCCATGCTCCCCGGATGGGGAGCGAC	AGAATCGGAAGCGTCGTTCCAATCAGATGAAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATCCGGGTGTGATTTTGAAGACCCTGCTTGACGA
ATTTCAATCCACGTTCCCCGGATGGGGAGCGAC	ATACACGTCGCCTTTGCCGTACATTGACGCGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ACCCCTTCGCGATGTTCTGGCCGATTTCGTCACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021557.1\|WP_095256858.1\|1666147_1666900_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP021557.1\|WP_003833371.1\|1682300_1682696_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NZ_CP021557.1\|WP_106630998.1\|1666947_1669257_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_CP021557.1\|WP_021649100.1\|1670344_1671358_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP021557.1\|WP_153257412.1\|1688317_1688572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_021650047.1\|1677278_1680587_-\|mupirocin-resistant-isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NZ_CP021557.1\|WP_003830252.1\|1671652_1673515_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP021557.1\|WP_007054955.1\|1688924_1690370_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340868
NZ_CP021557.1\|WP_021649095.1\|1663803_1665378_-\|proteasome-ATPase	unknown	unknown	gnl\|CDD\|200312
NZ_CP021557.1\|WP_003833367.1\|1684855_1686376_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP021557.1\|WP_141563029.1\|1687799_1688135_-\|transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP021557.1\|WP_014483515.1\|1674251_1675472_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP021557.1\|WP_003830263.1\|1665431_1666127_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP021557.1\|WP_016462478.1\|1683851_1684841_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP021557.1\|WP_021649099.1\|1669501_1670206_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP021557.1\|WP_003833366.1\|1686635_1687655_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380522
NZ_CP021557.1\|WP_003833369.1\|1682827_1683775_-\|D-ribose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380546
NZ_CP021557.1\|WP_003830251.1\|1673681_1673966_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP021557.1\|WP_100218484.1\|1681259_1682225_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP021557.1\|WP_021649094.1\|1663183_1663744_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319790

Protein	Function_ID	Function_description	E-value
NZ_CP021557.1\|WP_095256858.1\|1666147_1666900_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.9082e-100
NZ_CP021557.1\|WP_003833371.1\|1682300_1682696_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	1.2579e-44
NZ_CP021557.1\|WP_106630998.1\|1666947_1669257_+\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP021557.1\|WP_021649100.1\|1670344_1671358_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	2.33225e-126
NZ_CP021557.1\|WP_021650047.1\|1677278_1680587_-\|mupirocin-resistant-isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP021557.1\|WP_003830252.1\|1671652_1673515_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP021557.1\|WP_007054955.1\|1688924_1690370_-\|MFS-transporter	gnl\|CDD\|340868	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters. This family includes Fusarium sporotrichioides trichothecene efflux pump (TRI12), which may play a role in F. sporotrichioides self-protection against trichothecenes. TRI12 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.81236e-19
NZ_CP021557.1\|WP_021649095.1\|1663803_1665378_-\|proteasome-ATPase	gnl\|CDD\|200312	TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP021557.1\|WP_003833367.1\|1684855_1686376_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP021557.1\|WP_141563029.1\|1687799_1688135_-\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	9.06014e-13
NZ_CP021557.1\|WP_014483515.1\|1674251_1675472_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP021557.1\|WP_003830263.1\|1665431_1666127_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.02095e-44
NZ_CP021557.1\|WP_016462478.1\|1683851_1684841_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.84345e-89
NZ_CP021557.1\|WP_021649099.1\|1669501_1670206_+\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.4378e-46
NZ_CP021557.1\|WP_003833366.1\|1686635_1687655_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380522	cd06299, PBP1_LacI-like, ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum produces significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	8.13343e-91
NZ_CP021557.1\|WP_003833369.1\|1682827_1683775_-\|D-ribose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380546	cd06323, PBP1_ribose_binding, periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis D-ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group belong to the type 1 periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.	3.20606e-124
NZ_CP021557.1\|WP_003830251.1\|1673681_1673966_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.88678e-17
NZ_CP021557.1\|WP_100218484.1\|1681259_1682225_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	2.2905e-104
NZ_CP021557.1\|WP_021649094.1\|1663183_1663744_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.29411e-25

>NZ_CP021557.1|WP_014483515.1|1674251_1675472_+|methionine-adenosyltransferase
MTEEHRLISAESVTEGHPDKVCDQISDAILDDLLAQDPSSHVAVETSAATGVFLVFGEVTSEGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGAQETAASREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGEVPHLRPDGKTQVTIEYDDNDQPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVLDEVLGSKVPHDNYRQLVNPTGSFILGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLAHKVEIQVAYAIGVADPVSINVETFGTEQGVTRGQIAAAVRKVFDLRPAAIIDELDLKRPIYLKTAAYGHFGRMDVEFPWEKTDKVEELKAAIAGE
>NZ_CP021557.1|WP_003830251.1|1673681_1673966_+|DNA-directed-RNA-polymerase-subunit-omega
MAFGTDPTPDGLANPPIDDLMQHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREIDEGLLEETLGEDDTNEGN
>NZ_CP021557.1|WP_003830252.1|1671652_1673515_-|dihydroxy-acid-dehydratase
MTEMRSAKIMSGRVFAGARALYRAAGVSGDDMGKKPIIAIANSFDEFLPGHVHLNKVGRIVSEAIREAGGIPREFNTMAVDDGIAMGHTGMLYSLPSRDIIADTVEYQCNAHCADALICIPNCDKVVPGMLMAALRLNIPTVFVSGGPMEAGTTVLADGTVKSTDLIDVMYATADDSVSDEELLNYEKTVCPTCGSCAGMFTANSMNCLTEAIGLALPGNGTILASHSYRKDLFKRAAQQVVKIAHQYYDDSDDSVLPRSIATKEAFENAMTMDVAMGGSTNTVLHILAMAQSADVDFTLDDIERISHTVPCICKASPSGKWEISDVHRAGGITGILGELERAGKLHTNVHSIDYPTLEAKLADWDIMRPTCTEEAKQMYKAAPGHIISPEPWTHTTLFDSLDTDRVNGAIHDINHPEIHEGGLAVLRGNLAPDGCVVKTAGVPPEIWKFRGPALVVDSQEQAIEVILNDTLKPGMALVIRYEGPKGGPGMQEMLYPTSFVKGKGIGKQVAMLTDGRYSGGSSGLAIGHMAPEAANKGPVALIKNGDIIDIDIEARSVNVELTDEQLDERRRELEAGDGYVAHRDRHVSQALKAYAAFARSADKGATRDPELINKLSGLA
>NZ_CP021557.1|WP_021649100.1|1670344_1671358_+|methionyl-tRNA-formyltransferase
MLKLVFAGTPDVAVPSLQAFAADSRFEVVGVITRPDAPTGRGRKLTPSPVKAAAVELGLTVIDAKPRSPEFMEALNGLHADIAAVIAYGNILPKSVLDAVPMGWYNLHFSNLPKWRGAAPAQRAIWNGDPTTGADVFKVGEGLDDGPIIASLTVELTGRETSGELLTRLAEEGAPMYVDALAAVGDGTAIFTPQPAEGLEYAHKITVEDARINWADPAETIDRQIRACTPHPGAWTELFAEGLIADSGEANEESADLTTAVKPLTLHILAAQPADQTNPNTPIDLDPGELKVGKKNVWAGTGTGTLELTQVKAQGKKAMRAADWARGAHLSPTACVK
>NZ_CP021557.1|WP_021649099.1|1669501_1670206_+|HAD-family-phosphatase
MKGWPGEPDMDYNVLVADGEAATNAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDAFLDNDISGFYDVNDLMDGGTSTEEAIAIMRERKGDKWADILDYYIKNFRDSLTGIVPGARVLVDDLKAAGIGVWGLSNWEASLFHVAEEQCDILQKLDGKLVSGFVKLRKPHKEIYDAALKEFGIKADGALFIDDKAMNIVGSNDAGIRGVRFQNPVKLRELLIANGVNIPDVQ
>NZ_CP021557.1|WP_106630998.1|1666947_1669257_+|primosomal-protein-N'
MTTSDAQQLTLDGLAPRKRRKRAPAEHTPAEHDPIAQVVLDVQALHLGQTFDYFIDEKDSDAAQPGVLVRVRFGGQRVSGVIWSRTSTSDTPRSSIRYIERVLSPDVLVPASMREDIGLIANAYGGTRANILRFAVPPRVAKVEAEQRLTASFRRPVGGSLPDNVQGGFASRGTLPDGTRPSGSSFEVADSVSEGAAQAYRRIAANYGEANVLNDALHGQRFQSFVFDSLPGAQEWQRNMAWMVATSLSAGKSAVVELPTMREVEDLLPVLRNYGLKPFSPTPSGGWIGDVAVLNAQMPAADRYRAYLAVALGQVKVIIGTRAVMYAPVEGPALFAILEDAAYQNMDGMMPYPQARGVMRLRAKSHGGVFVAMSNARTVQSQWENTGPGTVETPVSGYSTAIHPLASPLKDATPWVRWLNRDELARLADATIGARVPHTAVRALSKALESGPVLLSIPQDSTSGALSCAKCHRQARCAKCSGPLQLPADRSESAPRCQWCGAASIHWTCPGCGHERMRVVRVGAAGTAAELAGLFRSVPMVLSSKAQGLVRDVPCKPMIVIATPGFEPRVRPVSNERGAAGHEYRAVAILDAWTSLYALGVDARLDTLTAWMRAVSLCAPRSRGGQALILGETDPAIAQSLMMWDSRILASKDLDERMETGMPPTVAAACVWGRRDAVMTLMQRIGALGGDWAVCGELPGMLGPVPIAQPDTVDARELEATADRVKAVVRVPQSQRAELAIRLHRETARHVASREPGELRFRIDPKDLI
>NZ_CP021557.1|WP_095256858.1|1666147_1666900_+|phosphoserine-phosphatase-SerB
MSQGFSRIESMTQEDVHFIDKSAESEVGALGGSADSVPTLAEPGLLVMDVDSTLIDEEVIDELGEAAGSGEEIAKVTERAMRGELEFCDALRARVALLEGLPVSVFDTVHDKLHFTKGALELIDTLHAHGWKVGVVSGGFHEVVDKLAAEGHIDYWIANRLEVADGRLTGKVLGEIVCKTVKLHALREWAKQLDIPMSQTVAVGDGANDIPMIQAASLGIAFCAKPKTQLAADEAINDRDLMHVLDYLRR
>NZ_CP021557.1|WP_003830263.1|1665431_1666127_-|DedA-family-protein
MELATALAANPTPICTTSEGGLIGTITEWLITLMETIGGVGVALAIALESVFPPIPSEVILPLAGFTAARGTLSLPGAIIWATIGSLLGAWTLYGISRWVGLHRINRAADKIPGVSRKDVSKANDWFTRYGTWSVLIGRVIPVVRSLISIPAGFNRMNFLQFTGWTLLGSAVWNTILVSAGYLLGDQWCSIQGALGVFEDVVIVAVVVVIVWFAVKKVRTVVRNRKAQHGE
>NZ_CP021557.1|WP_021649095.1|1663803_1665378_-|proteasome-ATPase
MGEAENLAELNDRLMAKNHALAEALNRAGKELTKAKSQLAQLAQPPLTFATMVKIDSTHTDEDGVQHASAEVISGTRRMIVPVAANVNASRLAAGSTVVLNEKLVLVEQRDADTVGQIRVVKQILDDGRLIVVDASGNPVLVRRSSALSLTAISQGDRIIVDPSVRLAIELLPNEGDRDLVLEETPDVTFADIGGLDSEIGRIRDAVQLPFQHRALFERYDLKPPKGVLLYGPPGNGKTMIAKAVANALCEGGYDMDGDGSINGREQQVKGVFLSVKGPELLNKYVGESERLIRLIFQRARERAAEGKLVVVFIDEMDSLLRTRGSGVSSDVETTIVPQFLSELDGVESLDNVMVIGASNRVDMIDPAVLRPGRLDVKIRIDRPSGEAAASIVRHYLTDDLPLEQGLDADALSRVLVRDIYTRSERRHLADVRDERGTWNALFLADVVSGASLKNIVDRAKTHAVKASIASGKDVALDATLLGRAVEDEFAETRDSLLDADPVQWARVNGFDAGRVTAIRAVGR
>NZ_CP021557.1|WP_021649094.1|1663183_1663744_+|HAD-IA-family-hydrolase
MPRYSEKRIEDFLDNDISGFYDACDRMDAGASPAEGIAWIRETHGERWAEMLAYYFDNFLDSLTGTIPGMRVLVHDIKTAGLGVWGLSNWQRETIGEAENAYEILRMLNGRVISSEVHMRKPDTAIYMKALESFGIDAETTVFVDDRASNVIGANRAGIRCIRFHDERGLRETLIDAGVPIPAVAE
>NZ_CP021557.1|WP_021650047.1|1677278_1680587_-|mupirocin-resistant-isoleucine--tRNA-ligase
MSENVYPKANEGGETAHVAPNPSFPQMEETVLNYWDKDDTFQKSVERNPSGDHSQNEFVFFDGPPFANGLPHYGHLLTGYAKDVIPRYQTMKGRKVNRVFGWDTHGLPAELEAQKELGIDSVDQIEKMGIDKFNDACRASVLKYTHEWQDYVHRQARWVDFEHGYKTLNIPYMESVMWAFKQLYDKGLAYQGYRVLPYCPKDQTPLSAHELRMDADVYQDRQDTTVSVAVKMRDEEDAYAVFWTTTPWTVPTNFAIVVGADIDYVEVRPTEGKFAGKKFYFGKPLLEHYTKELGENYEVVRELKGSELAGRRYYPVFPYFAGEKAETEGNVPGPNGYTIFTADYVDTVEGTGLVHQAPYGEDDMNTLNAHGVKSTDVLDAGCRFTSQCPEYEGMYVFDANLPILRNLRAGDGPLAEIPEDQRAILFQEKSYVHSYPHCWRCATPLIYKPVSSWFVSVTKIKPRLLELNQQINWIPENVKDGQFGKWLANARDWSISRNRFWGSPIPVWVSDDPKYPRVDVYGSLEELKADFGDYPRDKDGNVNMHRPWIDNLTRVNPDDPTGKSHMHRISDVLDCWFESGSMSFAQFHYPFENKEKFEQHFPADYIVEYIGQTRGWFYLLHVMATALFDRPAFKNVICHGIVLGSDGQKMSKHLRNYPDVNGVFDKYGSDAMRWFLMSSPILRGGNLIVTAEGIRDTVRQVMLPVWSSYYFFTLYANAANGGAGFDARQLRADEVAGLPQMDRYLLARTRRLVERVEKSLNEFAISDACDAVSDFIDVLTNWYIRNTRDRFWNEDANAFNTLYTVLEAFMRVLAPLAPMEAESVWRGLTGGESVHLADWPYVVDEKTGADTELGRVLVDDPALVSAMEKVREVVSGTLSLRKAAKIRVRQPLAKLTVVAEDVDAVKAYDELLKSELNVKDIEFCTMEDAGSRGLKIVHELRVNARAAGPRLGKQVQFAIKASKSGDWSVNASGAPVVSTPSGDLELVEGEYELINRVEEENAAEAAASVSAALPTGGFVILDTALDDDLLAEGYARDAIRVVQDARKAADLDIADRISLVLTVPAVDVAKVEQFRNLIAHETLATSFEVKEGTELAVEVAKA
>NZ_CP021557.1|WP_100218484.1|1681259_1682225_-|ribokinase
MLGLLDDIVASRSRISVIGSMNVDYTVTTKRLPKPGETVNGGPLTLLPGGKSANQASAAARIGAQVRMFGAVGEDANADFLLEHLRDAGVDTSHIAAVAGPSGTTVITVDANGENTIVYSAGSNGEVSVDYVRQSSDALVAADVLGLCLESPMETVTACARLCHDAGLKVLLNDSPFVAELPAELIEASDILLVNEHEMAQLLDIAEPDDDDWDGLDWSDVARQMHDFGFNQAVITLGGDGSVVIDGDDIYRIAPVAVEAIDTTGCGDAFMGTVLAGLASGHALADSAQLASYVSAYAATGFGAQASYGTAAQIRERFGAK
>NZ_CP021557.1|WP_003833371.1|1682300_1682696_-|D-ribose-pyranase
MLTHGVINAQLAQALAGLRHKDRFVVSDAGLPVQPGIEVIDLAVAFGVPRFEQVLDAIAPELVLEEGIMAEEARGTIAEQWVKDRFDVPLSYVPHDGENGFKAKVKGVKFVIRTGETTSYSNVIFRCGVPF
>NZ_CP021557.1|WP_003833369.1|1682827_1683775_-|D-ribose-ABC-transporter-substrate-binding-protein
MMLNSTMKKTFRAALAIVCAGTLMAGTAACGSTSSSGGDKVALLVSTLNNPFFVDLRDGAQAAAKDLGVDLMVSDAQNDSSTQQNQAQNAQSQGAKAVIINPVDSDAASPAVAPLLSSSLPVISVDRSVTGEDVTSHIASDNVAGGAQAADELAKAVGEKGKVIILQGTPGAASTRDRGDGFKKEIKKYSGIEVVAEQTANFDRAEALDVTTNLMQSNPDVVGIYAENDEMALGAIQSLGSKAGADVKIFGFDGTEDGLKAVSNGTMVGTIAQQPKELGKKAVEAAVKAIKGESVEKTESIEVKTVTKGNVADFQ
>NZ_CP021557.1|WP_016462478.1|1683851_1684841_-|ABC-transporter-permease
MTAKEQKLGYDSGSVSTLDKVKRFASRNGALIGLIILCIILSIATPAFLTGPNLLNVGIQAATVAILAFGQTFVIVEAGIDLSVGSVAAVSSMLVAYTGASMGLPPILTIVVGLVTGAVFGALSGIANAFLKLPSFIATLAMMSVARGLTLVISDGRPVSTSGMVNFFGSTVLGIPIPIVMMIIMGVIASVILNFTSIGRSMYAVGGNMEASRLSGISVHKTQIMVFVLSGIFAAVAGLVIAGRLHSAQPQAASGYEMDAIASVVIGGASLSGGKGKISGTFIGAILLAVIRNGLNILNVSSFWQQVVIGLVIAFAVSFDTLRRKVDAH
>NZ_CP021557.1|WP_003833367.1|1684855_1686376_-|sugar-ABC-transporter-ATP-binding-protein
MTQLSLVGVSKIFGNSTVVDNVSVTVEPGKVHVLLGENGAGKSTVIKMMSGIYQPDKGHIEVDGQTVRIPNVEAARKLGIAVIHQELNMVPELSIMENLFLGALPTKVGFINKSAMKSKAREALKLIGLNEDVSTPMGELGVARQQMVEIAKALMQDASILILDEPTAALTRKECEQLFVIMGELKARGVGMVFISHHLDEIARVGDVVTVLRDGKYIDTIDAKAPESELVRLMVGRSIENQYPRVAQQPGKTLLEVKDLTRAGAIEHVSFDVHAGEVVGLAGLVGAGRTEVLRAVFGADSYDSGSVTVDGVQLPKASIDKTIAAGVGLVPEDRRTQGLILEASVADNLGLATMVPTSKFGFADLKGQRDRENDTARKLRIRMANIDQTAGSLSGGNQQKIVFGKWSMANVKVLLLDEPTRGVDVGARVEIYELINEITANGGAVLMASSDLPEVLGMSDRVLVMSNGKLSGEMPASEATQERVMSLAVSHMNEDFSENTTANVEK
>NZ_CP021557.1|WP_003833366.1|1686635_1687655_-|LacI-family-DNA-binding-transcriptional-regulator
MAFVTLKDVAQQAGVSAAAVSQILHDKGRFSNETRQLVLKTVEEMGYVPDQRARSMRSSATKTVGLLVPDLRNAYFAELVSSMEEGLYAHGFSTLIGTSAETVKRQDAFIKNLLGQRIDGAIVVPQGSDSPGVKSLIARDLPLVFVDRRVQGIESVPFVVSDPYTGIREAMEELVALGHRRIGYIAHSSLESYSVNEREVAFRTAAPELLHGDTGIVVDCGSTYESRCHTVDYLLECGVTAIICAYSPDAITIIGLLHDRGIELGTQMSLISFDDIAPFRLMTPKISVISQQAEQMGRQGVDLLLEAMQSGVHQGGSTIHVPTVYLSRGSVARVVVSAQ
>NZ_CP021557.1|WP_141563029.1|1687799_1688135_-|transposase
MGGARQLEELLRGLLGRPIGRAGSELKHWVFRAPRSHIPEIVEPAGKIRRRRPDILRTIGPGYPNARLEAFDNGIKVTVRVAYGFHHVTNLISLIMLRCGGLDIRLPEPVS
>NZ_CP021557.1|WP_153257412.1|1688317_1688572_+|hypothetical-protein
MDLEHGLRTQRAVDDPRGLDDHAFDVEETFEYAVHQAFSVVRFFGRKTEYAETPPTLTKPTAQRRTHTHENSNSATKQASASSS
>NZ_CP021557.1|WP_007054955.1|1688924_1690370_-|MFS-transporter
MAETAVKEKANGIPVPEEGTEEFARMNKMAKIAIPIVLIIFTMGVLQQQAFGMIYVNIGDQLGQANLAPLITSIPGIVLGIVCVIYGSLGDFVSLKKMMILGTIVFVLGSILGCFGDLSIWIVIAARTVQSAGWQVSGSIFLVLVSKYIEKKKRVIWYGVFVAVFRIAAALGVFLAGYMTLVDWRILFGIGIIAVFFIPILAKNLPDEHAKGARVDVIGFTLIGLFAGSVTMFFTDMTIFWGIAVLVTGVAFVVYINKAADPFITPEMLTNPAFAMTMIVIFVGYFFSYTLNAGCNAIGLNVYGIDSSQVSNLLVWSIILAAIMGFAAGPIIQKIGRKASIILALACMGGGLIAVAFLIPMGQIWALAVAPCIYYFGTSFFYQPIVDTATLTVEAEESGRALGFNDLMQAITGSVGVAIFGQLMANGAMSGGSLFGTESGPASTYANVFMVGGIIVLGAMVIFICSMKMIYSRSRVAEDES

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Crispr_ID: NZ_CP021557_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021557_3

2024010-2024156

Orphan

Consensus_repeat	Method
AATCTCCTAAAATCCTGTCACTAAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP021557_3

>merge|NZ_CP021557|3|2024010-2024156|CRISPRCasFinder
TTCGTCCTAAAATTCTGTCACTGAGTCAAAGCCAATGACAGATATTTAGGAAACCAACCCCAATCTCCTAAAATCCTGTCACTAAGACTCACTTAGCGACAGTAATTTAGGACGACTGGGATAATCTCCTAAAATCCTGTCGCTAAG

>NZ_CP021557|3|3|2024010-2024156|CRISPRCasFinder
TTCGTCCTAAAATTCTGTCACTGAG	TCAAAGCCAATGACAGATATTTAGGAAACCAACCCC
AATCTCCTAAAATCCTGTCACTAAG	ACTCACTTAGCGACAGTAATTTAGGACGACTGGGAT
AATCTCCTAAAATCCTGTCGCTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021557.1\|WP_077320687.1\|2002590_2003025_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223508
NZ_CP021557.1\|WP_019727371.1\|2013465_2015088_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP021557.1\|WP_106631088.1\|2033481_2036553_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|273254
NZ_CP021557.1\|WP_014484324.1\|2032986_2033295_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP021557.1\|WP_095256869.1\|2018074_2019034_-\|biotin--acetyl-CoA-carboxylase-ligase	unknown	unknown	gnl\|CDD\|223417
NZ_CP021557.1\|WP_042994335.1\|2028356_2029619_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213024
NZ_CP021557.1\|WP_003831625.1\|2024270_2025224_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_106631025.1\|2030954_2032646_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237045
NZ_CP021557.1\|WP_003829786.1\|2022514_2023207_-\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP021557.1\|WP_106631023.1\|2023222_2023654_-\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP021557.1\|WP_015439254.1\|2029714_2030848_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP021557.1\|WP_025300057.1\|2019205_2021305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021557.1\|WP_106631022.1\|2003943_2013426_-\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|227315
NZ_CP021557.1\|WP_003831622.1\|2026452_2026680_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NZ_CP021557.1\|WP_025263277.1\|2015080_2016961_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP021557.1\|WP_042994332.1\|2017473_2018073_+\|biotin-biosynthesis-protein-BioY	unknown	unknown	gnl\|CDD\|376871
NZ_CP021557.1\|WP_003831624.1\|2025592_2026420_-\|transcription-termination/antitermination-factor-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP021557.1\|WP_106631024.1\|2027009_2028215_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP021557.1\|WP_025300058.1\|2021383_2022241_+\|polyketide-synthase-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP021557.1\|WP_003829776.1\|2032712_2032964_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464

Protein	Function_ID	Function_description	E-value
NZ_CP021557.1\|WP_077320687.1\|2002590_2003025_+\|hypothetical-protein	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	6.28896e-15
NZ_CP021557.1\|WP_019727371.1\|2013465_2015088_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP021557.1\|WP_106631088.1\|2033481_2036553_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	3.882e-152
NZ_CP021557.1\|WP_014484324.1\|2032986_2033295_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	4.17736e-35
NZ_CP021557.1\|WP_042994332.1\|2017473_2018073_+\|biotin-biosynthesis-protein-BioY	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	7.31325e-28
NZ_CP021557.1\|WP_042994335.1\|2028356_2029619_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213024	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins. This family contains an uncharacterized protein yadE from Escherichia coli and its bacterial homologs. Although its molecular function remains unknown, yadE shows high sequence similarity with the catalytic NodB homology domain of outer membrane lipoprotein PgaB and the surface-attached protein intercellular adhesion protein IcaB. Both PgaB and IcaB are essential in bacterial biofilm formation.	5.84215e-62
NZ_CP021557.1\|WP_106631025.1\|2030954_2032646_-\|GTPase-ObgE	gnl\|CDD\|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
NZ_CP021557.1\|WP_003829786.1\|2022514_2023207_-\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.72993e-143
NZ_CP021557.1\|WP_106631023.1\|2023222_2023654_-\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	2.69599e-89
NZ_CP021557.1\|WP_015439254.1\|2029714_2030848_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	1.3328e-175
NZ_CP021557.1\|WP_106631022.1\|2003943_2013426_-\|type-I-polyketide-synthase	gnl\|CDD\|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0
NZ_CP021557.1\|WP_003831622.1\|2026452_2026680_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	4.48776e-12
NZ_CP021557.1\|WP_025263277.1\|2015080_2016961_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP021557.1\|WP_095256869.1\|2018074_2019034_-\|biotin--acetyl-CoA-carboxylase-ligase	gnl\|CDD\|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	8.75493e-30
NZ_CP021557.1\|WP_003831624.1\|2025592_2026420_-\|transcription-termination/antitermination-factor-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	2.33279e-66
NZ_CP021557.1\|WP_106631024.1\|2027009_2028215_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP021557.1\|WP_025300058.1\|2021383_2022241_+\|polyketide-synthase-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.77745e-16
NZ_CP021557.1\|WP_003829776.1\|2032712_2032964_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	5.68869e-49

>NZ_CP021557.1|WP_106631023.1|2023222_2023654_-|50S-ribosomal-protein-L11
MAPKKKVSALIKLQIQAGKANPAPTLGPALGSHGVNIMDFCKAYNAQTQDKMGQVIPVEITVYEDRSFTFVLKTPPAAALLKKAAGIEKGTENPLTHKVGSVTKAQVREIAETKMEDLSARDIEAGMKIIEGTARSMGITVTD
>NZ_CP021557.1|WP_003829786.1|2022514_2023207_-|50S-ribosomal-protein-L1
MVKRSKKYREAAERVDRNNLYTANEAIALLKSMPSYNFDQTVEAVFRLSVDPRKADQLVRGTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGVPVDPNTLA
>NZ_CP021557.1|WP_025300058.1|2021383_2022241_+|polyketide-synthase-regulator
MSDFLELLAADAANSSDFTDRSGISATDRARTVLFECLFNHLADDRVASLFTILGFEHDFTCYAIAGYPARSAARSRVDIEKIVADFGGTCLTAERPITGLTGADNGTGRTAVVALIRPVGAATPEIICNTIAPAFDADRPIALGSQRTGAEGAMRSVQATLYCLRAAPALAATAQSLPRPLRTDDALPERALIGDEDARDELIRVVYGSLTAAGPDDPTLLTVSTFLKYGGSLETCAKELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRMATAQ
>NZ_CP021557.1|WP_025300057.1|2019205_2021305_+|hypothetical-protein
MTSPASSLPAAAAHPRLARVGAAARWMLAVLACLWLALCTAVGPLYWDFENGTIANWNWTNTAFFVLSFAIYLGLIVIMVRFAAGQRVLPRAISGRLNRAGQQHSNQALEPSQSQSVVADSNVSKRHATAASRFATLGRWITRGTNRFWKLALVFFIGWLWVPTTLLAAFGADIRSQIREFSWAWNQWTGLQQPYIGFFSFVPMDIYPTAHYMWPPDSTYLTDQHNVVLTVFYGAVAAFSRYLTGSNDAGIVALAAGQMLLAVFCCAATANRFLNRPWMGVAQSTKDKNGSSTGNVSSTTSARIAQDAAPQLAGGHARFLILAFFLCCPLAVFATISITKSPLFAFSFVWWFGIWYELTQTWKPEGKRKGLTATAPIRLPRHSFVAFVLSTAVMLISAKYAWYIIALQIVLALIADRRRWTTYVVALLIPTMLIHGGISLAISSGAIIGGDPIESRGVQLQMIARVASRNPEGISEEAKKNLSDVFNLDQMADAYSQQDADPVKSSGIQAKKVSYKWRTVMPEDMTNFNKAWFEIVKDNPVIALDALLAKCFGYFNVTDQPYVSMDYYVTSDYVQKNSTWIKSYNHNWRERITGFTRSWGKIPVIGWITHGNFYVVMTLLIGAAEVIRRRWLTLMTHIPLLLLMGVMITAPANNFERHMLPVAFVFGFVVLTYWRESLAERRIARQAQSSASTTTTLPQ
>NZ_CP021557.1|WP_095256869.1|2018074_2019034_-|biotin--acetyl-CoA-carboxylase-ligase
MGGFVRFFARHRESGRANRGNVVPMMIALQAATPQLPRTKAVADQVVAVGETDSTNALAARMIGDGSLTLPERKGGTLAVGVVATDWQSAGRGRNGHTWISQPGRCSTMSYAVRIPRAIATDESVNGWLQMIAGLVTLDALNGMIKEYGAAPNKQDCFLELKWPNDVFCHGLKLGGLLSELVLLPDGEADDDVVVVFGVGLNLALGASRLPTPQSTSLQLHVSGLPSFNEMRDAVAEREVEGFRERLAAFIADPHGQAEALREEMKAVCWARGRQVEAHFTDSTTLIGEAIGLNEDASLILRTEDGTDHTVRTADVGVL
>NZ_CP021557.1|WP_042994332.1|2017473_2018073_+|biotin-biosynthesis-protein-BioY
MQTSHTTSSTAATASLGRRIVAASWKPALFAVLMWLSAAAGAIPIPGTPVPITLQTFVVMLAGLMLPWRQAGSAVAAYLAAGAVGLPVFAGGASTMALVGPSAGFLFGFLPGVIVIALLRGKANTSSASAAALTAGRYLLAALVGGVVVVYALGFVIQSALTGAPIAAVALASMGFVAGDTIKAVVASLAAAGLSKLGR
>NZ_CP021557.1|WP_025263277.1|2015080_2016961_-|ATP-grasp-domain-containing-protein
MAHIVKKLLIANRGEIALRVVRTAKEMGISTVAVYSEQDRNSRYVDMADEAYLLSGDTYKDTYLNEDLLIDILHKTGADAVHPGYGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPFLPEEIVSTLEEYSRRLFTTVGYVGLGTCEFMVTPNGKVYFLEVNPRLQVEHTVSEEVSGLDLVREQLNIAAGGELTRAPEPRGHSFELRITSEDPATNLTPGSGTLEKIQWPAGPGVRIDTGVEQGDTISPKFDSMMGKVIVTAQNRLDAVARVRRVLDELVIEGVPTPIPLFKEIFRNDDFTAENGHPFSVSTKWLERTYLNRTPASASSGQPASLAGAAAPAAPDKSTSETFVIEMNNRRVKLTVPLDIVENITGSARARGAKRPTQPLRGAGLHNVASGAAKANDGAKSGVIASPMQAVVTRINVSEGQQVAKGDLLVVLESMKMENYVYAPAAGEVKKIFVGPADGVEAGDTLVTLDVNAGKAKAEDSKKEGGND
>NZ_CP021557.1|WP_019727371.1|2013465_2015088_-|acyl-CoA-carboxylase-subunit-beta
MTDIMDSPAVKAVTAASATNASQPPAHQPLRAAVVKAAELARAAEERARDKQHAKGKKTARERLDLLFDTGTFEEIGRFQGGNIAGGNAGAAVITGFGQVYGRKVAVYAQDFSVKGGTLGTAEGEKICRLMDMAIDLKVPIVAIVDSGGARIQEGVAALTQYGRIFRKTCEASGFVPQLSLILGPCAGGAVYCPALTDLIIMTRENSNMFVTGPDVVKASTGETISMADLGGGEVHNRVSGVAHYLGEDESDAIDYARTVLAYLPSNSESKPPVYAYAATRAERETAKRLATIVPANERQPYDMLEVIRCIVDYGEFVQVQELFGASALVGFACIDGKPVGIVANQPNVLAGILDVDSSEKVARFVRLCDAFNLPVVTLVDVPGYKPGSDQEHAGIIRRGAKVIYAYANAQVPMVTVVLRKAFGGAYIVMGSKAIGADLNFAWPSSQIAVLGAAGAVNIIHRHDLAKAKASGQDVDALRAKYIKEYETSTVNANLSLEIGQIDGMIDPEQTREVIVESLATLATKRRIKRTTKHHGNQPL
>NZ_CP021557.1|WP_106631022.1|2003943_2013426_-|type-I-polyketide-synthase
MSTFFLNRLTTEPHALAFAGQSTPWPVALADQTTDPSLDEALRGHVAAANRLLAPAAADLLATTGRPVDLFGFTPNPARLSAAADATASVEGVALTQLGALLDLEHLGYSVAAAKPVAVLGHSQGVLAVHMTRAIEAAGSIEAAGKTLDEILAVAALIGAAGTRRVRELGLNPKYGEASPMLSVKGATREQVEALVKRVNNARGPISIAVTNSDNHHVLSGHPEDLAALALETEREHKHQAKLREQKLHGGTVFNPTLEYLEVTLPFHSPLMAEAVEQTVSWAGACGFDQDRTRALAEEVLLNHVDWNARVKALFNAADPAKLWIVDLGPGNTLGKLIGNVVQGTGIGVVEATTLSERSALSTLESEPERTQNWKALAPRVIETPAGAKLVTKFSKLTGKPPVLLPGMTPTTVEPEIVAAAANAGYWAELAGGGQVTAEVFDRHIAALEDELEEGRTVEFNAMFMDRYLWNLQFGSSRIVPKKRASGAPIDGVVVSAGIPELDEAVELIKNLQADGLPYVSFKPGTVDQIRQVVRIAKAVAPITIMIQVEGGEAGGHHSWEALDDLLAATYAEVRACDNLVLVAGGGIGTPERAADYISGQWAHAYGLPDMPVDGVLIGTAAMTAKEAHTSPEVKQMLVKTPGIPADAKSDDVFAPQAAHWVPSGKSVGGMSSGLSHLHADIYELENDSAECGRLLVRVMKHPEELDSRRKEIIEALNKTAKPYFGDLASMTYLEWAQRFAELAFPWADPTYADRFQHLLQRIEARANDTDSGEFTSKLFAADGVSADEAAAAGLLTRDGILADPAPALEKLALSYPQTAELKVVPADVAWFPVLVREYPKPMPFVPVIDNDLLRWWGQDQLWQSEDQRYSADSVRAIPGPISVAGITTVDEPIADILGRFENAAIERVKAEQNASESNDFAALGEAVSAEDFIRKSPNISWVGHIADNPAYGTALGDQYYEIRAFDAAAGKYDLDIHLDTYWDNDPDGGTSKHAVRDIVIPLIVEGTELGRLPVVDRERLIPDVYAMLAATAGIGNTAITGDKLTEMPTLSVPSDEGAVTANAVTEGETAQNRPFGTATATYTLSANLGFDHEAATGAALPATLQPSRIAPDALVGPAWPAIYTALGSVYVKGYPVIEGLLNAVHLDHLIELEVNEEDLLKHTGETITLKSWAEDYFESASGRVVTIHVTHTAADGTLLARETERFAIRGRVYSDALPADAPEFGDAEHAEVAPTPRRLLRRVKVVAPHDMTAFARTSGDFNPIHTSTRGARISGLAAPLVHGMWLSATAQHAVQALDEKGAHYEIAGWTYNMYGMVQLDDTVEISVERVGKVRHGGMTLEVTCRIGGQLVSRGTALVRAPRAAFVYPGQGIQKQGMVLDERAKSAAARDVWERADKLTRAKLGFSILGLVRDNPKELTANGVTYRHPEGLLNLTQFTQVALATVAFAQTARLREAGADIWPAYFAGHSLGEYNALSAFADVIPLETVLELVFHRGSTMHHLIERDAQGRSNYRMGALRPNQFGVDDAHVKEYVESVAKASGEFLEIVNYNLAGQQYAIAGTIAGLKALKADSARRVAAFGGKPAFMLVPGIDVPFHSTLLRKGVPEFRDKLDALLPAYIDYRGRLVDRYIPNLVASPFEMTKEFAAKILEVVPSERIKAALDDPAVWDSYAADDQKLGRLLLTELLSWQFASPVRWIETQALLFGKREQGGLGIEEYVEVGLGNAPTLANLGTKTLRLPEFAGNDTVVYNVGRDEGRVYMTDTDSLVPDDEPEETAAPVETAPAGGSAVAKLGSSAAADAAPAAAAAPAPAAPVSAAPAGTPSGAAVADLPFKASDGIGVLMAYAAKVRLDQIGSNDTTDTLTNGVSSRRNQLLMDISSELGVASVDGAAEATLDKLAQIVNKAAPNYKPFGAVLSEALRDRLRSLFGAAGVKQQYIRDRVANVWQLGEGWVASVLAALLLDTREGSSSRGGDLAKLPTAAVQNKPEADKLIDAAVEVVAQLKGVAVALPSAGGAAGGAVVDSAALDAFAEKVTGSNGVLAATARFVLNELGVAAPAPEESEDENAAVVAAVEAELGSDWPKQVAPRFDANKAILFDDRWASAREDLARAYYDNDPAALNGSFIGLGKTIAAEAQWFADKSNNDELKAAFQKAASEALESVTSDKNASRYANDIAIVTGVSPNSIAAQVVEGLLAGGATVVATSHSFKPSIKAWAKQAYREHATGNAKLWLVPANLSSYRDVDALVDWVGHEQKKTSGATTTILKPAWEPTLFFPFAAPPVHGTLADSGDLFESQARLMLWGVERAIAGFSHIGADTNVQHKLHVVLPGSPNRGVFGGDGAYGEVKSAFDAIVNRARAEKVWSSRVTFAHPKIGWVRGTGLMGGNDPLVAVVERHGIHTYSTAQIAAKLLDLCTAESREQALKAPLDVDLTGGLGSEPIDIKALRAEAMADAEKESSSEKAAIEGEKPEGGAAGSTLKALPTPIVTKQAPVDLADWQNVTARPEDEIVIVSVGELGPWGSGRTRAQAELGIHSDGTVDLSAGAVLELAWNMGLLTWVDSPKPGWYDTDGNLVPEEDIAERYHDEVVARSGIRPFEEGMGDDYKDGADEEEAEVFLDHDVTFSVPTRDVAAEYVKLDEAHTTIAPDEESGEWNVTRHAGSMIRVPRRATMTRTVGGQFPKGFDPTRWGIPASMVGDVDKIALWNIVTTVDAYLGAGFTPAEILESIHPSLVASTQGTGFGGMMSMRKLYLDRFLNHEIPTDILQEALPNVVAAHVMQSYIGGYGNMIQPVSACATAAVSLEEGVDKIALGKADFVVTGAIDDIGVESVIGFGNMNATANSEEMYGKGIDARFFSRANDRRRGGFLESQGGGTILVTRGDIAEKLGLPVAAVVGFIHSYADGAHTSIPAPGLGALAAGMGGKDSKLVRDLAKLGVSADDIAVVSKHDTSTNANDPNESELHNTLAHAIGRTDGNPLFVISQKTLTGHAKGGACIFQVNGLTQLFKSGVIPANVSLDCVDPKLQRDDHMVWIRKPLRIGGGEDEFGRETAGRPVKAGLATSLGFGHVSGFVALVHPGAFEAAVAKADGEAALEAWRERANARLAAGQRHLEEGMMGRAALYEPIDNRRFHEDHRGYDHHEVEKAMLLNPDARLGADGYYEA
>NZ_CP021557.1|WP_077320687.1|2002590_2003025_+|hypothetical-protein
MRALPTTNANPPAAVAAARKAVVEADGVWIFSPEYNYSYPGVLKNLLDWLSPPAGAVPGRVRFRDGRQEGRPVRCRRSVRRRRHARQAQRGAGLWQDRTAAHRQAGRSGSGSRGLGDTDKLTLSDEDEARLAAEADAFLALVAE
>NZ_CP021557.1|WP_003831625.1|2024270_2025224_+|hypothetical-protein
MKTHKEVAALLQTAQREQRCAIGDGGKLYTALRRRTKIGEVVSPYPNLFAATSYWKSLNVEQQSMHLIRALAKVHPTWTFAGLSAACVYQYEHSYSLHNGTVDIVSPKGANCGGASGLNRIYMARCSQYRCQGILVTSPARTLIDCASLPFDKALAIYDSALRLQHVTKLDVETLIVQTDCNETNVKRLLRYANPLRENGGESWTYARIRQLGFAEPLFQTEFDNPANPEMPYRVDFCWKLHDGRIIVVEYDGIAKYRDTSNPNRANLMAKFEYERQRDTNLKTQGVTSIKHLFYEDVSDLKRLNALLTAIGIPKIR
>NZ_CP021557.1|WP_003831624.1|2025592_2026420_-|transcription-termination/antitermination-factor-NusG
MSDELNLENLDAALENVDAAADEAPVADAPAEAVESAEPVAEAPVASPETATESAEEESEVNESEQAEETDAGQKAVDEFSKSLRTLDGKWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPGYVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDKPAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFHQVQKLD
>NZ_CP021557.1|WP_003831622.1|2026452_2026680_-|preprotein-translocase-subunit-SecE
MAKTSTNEKAVKPNVFMRIGLFIKQIIDELRKVVTPTAKELFFWSLAVFIFVLLLMALVTGMDFGLGKATLGIFG
>NZ_CP021557.1|WP_106631024.1|2027009_2028215_-|pyridoxal-phosphate-dependent-aminotransferase
MAQWQILSDRINTVAPSATLAVDSKAKAMKAAGLDVIGFGAGEPNFPTPANVVKAAADACLDPKNYKYTPTPGLPELREAIAAKVLRDSGYEVSADQVVVTNGGKQAVYEAFQILLNDGDEVIIPTPYWTSYPEAVKLADGVPVEVFAGADVNFEPSLEALEAARTERTKAIIVNSPNNPTGAVWKPETVEAIGRWAVEHHIWIISDEIYEHLNYDDARTTYIGAAVPECRDQLLVLNGVAKTYAMPGWRVGWMVAPAEVAKAATKLQGHMTSNVANISQCAALAAVSGPLDEVYEMRKAFDVRRRAIVAALNDIEGVYCPTPTGAFYAFADITALLGKPLGSNGTVCATSADFAAALLDEAHVAAVPGEAFGAPGYLRFSYALADDDLAEGMKRFKDWAK
>NZ_CP021557.1|WP_042994335.1|2028356_2029619_+|polysaccharide-deacetylase-family-protein
MAKHHESHGSRGTRRSTVEPRVAYSRHAETHSAHGSQLHYGQHASHRSAAAIAAQRTRRIAVLVVAAVVAVALVITVGVVAHGWFVRQSAPSMQQQLPTTAHKSLTRKTVPQLDPGNIVIGVNGSETTYVLKGEQYVEGGAHAIEPEDGVLTGNIVTTGTVDTNTPGDYTVQYTVHDSTGHEASATRTVKVVDTMDKQTGGIPVLMYHYVYDPANPPADVDANWIPTTSLEPQLQYLTQNNFYYPSWPEVRAFIDGKHSLPKNSIVMTFDDGEPHFFQYGTPLLAKYKVPATSFIIGADGEALNKMKTYATPYLEYESHSFDMHRAGGTVGHGGRISAMSHQEIVDDLKQSEQVTGSLQAFAYPFGDTTPDAIEAVRETGTLAAFTTQYGWADVGADPMNLPRVRIQGTGSLDTFIAAIQ
>NZ_CP021557.1|WP_015439254.1|2029714_2030848_-|glutamate-5-kinase
MSTPSQAEVRRMIAAAGTIVVKVGSSSLTQPSGHLDPDKLDALTAALAQVRLMGARVVLVSSGAIAAGFGPLGFDERPADVATQQATAAVGQGLLMARYEAAFGRFGIRVGQILITAEDTIRATQYRNVERTLDRLLDLGVVPIINENDSLASNEIRFGDNDRLSALVANLVRAEALVLLTDVDALYTAPPAQPGSRRVEYVPNVIDALGDIQVSGSGSKVGTGGMVTKLEAARVAAVSGIPTVLTCASNAGPAMMGDPVGTVFAPVKARGSSRRLWIGFAAEPRGTIVVDAGAAKAIRGGRASLLAAGALDVHGDFSAGDPVWIDDESGTHLARGLAGFDSEEIPQTLGRNTAQLKRFLGDQYAHPLVHRDNLVLV
>NZ_CP021557.1|WP_106631025.1|2030954_2032646_-|GTPase-ObgE
MSDFVDRVTVHVRGGDGGNGSAGIRREKYKPLAGPNGGNGGDGGSVVFVADRNATSLLDYRFMPHRTAGNGTMGLGDNKDGSKGEDLILPVPCGTVVFEARGEQGKTKHPGEQLADLRHEGDRVVVAQGGAGGLGNIALANKTRRAPGFALLGELGEERDVILELKSIADVALVGFPSAGKSSLIAAMSAAKPKIADYPFTTLVPNLGVVIAGDSRYTIADVPGLIPGASEGKGLGLEFLRHIERTEIIAHVIDCATLEPDRDPMSDYQALENELALYADKLELPLGAISIPERPRIVILNKIDVPEAKELAEFVRLEFEKLGLKVFEISTASHEGLKELNFALSELVHEMREEVASREEAEEEARVVIKPLERTGRRPRRADEGGNALDFTVERRELGNGEVFYEVRGAKPERWVMQTNFDNDEAVGYLADRLAKLGVEDELRRKGARPGDEIRIGRGDRMVEFDWDPTISAGAEMLDGSNLGARGKDLRLEEQDPRAHRRSNAERRAQYHEMMDARAAVRDAMMAERKAGHWADPTVDDDRHDETSLFGHGESADDSASEE
>NZ_CP021557.1|WP_003829776.1|2032712_2032964_-|50S-ribosomal-protein-L27
MAHKKGASSSRNGRDSSPQYLGVKKFGGEAVVAGNIIVRQRGTNFHAGQNVGMGKDHTLFALADGSVKFGVRRDRKVVDVIAA
>NZ_CP021557.1|WP_014484324.1|2032986_2033295_-|50S-ribosomal-protein-L21
MYAIVKAGGHQEKVEVGDTILVNRLDAKKGDTVEFPVALLVDGAKVTLAAADLAKVSVKAEVVNDEAKGPKINIQKYKNKTGVARRKGHRQPLTIVKITAIA
>NZ_CP021557.1|WP_106631088.1|2033481_2036553_-|Rne/Rng-family-ribonuclease
MPTENREGFVGDETDNSTVSNTESQASGASEPNAEASQPTRRRRGGRRVVRGTGAAGASLELQVQEHAAPLFEAPALPDADASASAETTDNNASDDEKHPARRTRSRRSADNADYEDRSTRRRAVADDDDEPRPVRRRRAVSDDLEEDDERPIRRRRVASDDFDEDNDRLVRRRRSVIDDLEDDDAPRSSRRRTAVDDSDEDGDRPVRRRRSTTNDRDDRDDEPRSARRTRSRRSSEDAREENPDERVLDVIDALPAGHESARRGKPMTSLLFQEPVLPDMRRDDRDDEEDDGEQRSRSSRRSRAREDEADYEERPSRSRRSNRSDHGDHDDRDDHDDRDDSRNNRRRNEAQDDFDADDQSDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDITYSPIAEEENDEESDSTRTRSRRRRRRGSRNESGASNNDSESSENNGDDSRRRRDDRDERDRDDDEEQTVTRRRRRRRGGKNAESGDEQDDQQLTRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREKEHHTQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPDEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTEEE

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Crispr_ID: NZ_CP021557_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021557_4

2169492-2169568

Orphan

Consensus_repeat	Method
GCAAATCCCCCAACCAATCGAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021557_4

>merge|NZ_CP021557|4|2169492-2169568|CRISPRCasFinder
GCAAATCCCCCAACCAATCGAAGAACCACCCCGTCCACGGACCCTCAACGGGGCAAATCCCCCAACCAACCGAAGAA

>NZ_CP021557|4|4|2169492-2169568|CRISPRCasFinder
GCAAATCCCCCAACCAATCGAAGAA	CCACCCCGTCCACGGACCCTCAACGGG
GCAAATCCCCCAACCAACCGAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021557.1\|WP_106621145.1\|2153374_2154424_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP021557.1\|WP_016462703.1\|2156576_2157518_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|376782
NZ_CP021557.1\|WP_065452615.1\|2178275_2179043_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP021557.1\|WP_106621146.1\|2155053_2156472_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|340890
NZ_CP021557.1\|WP_106631045.1\|2159487_2161356_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP021557.1\|WP_015439324.1\|2171222_2171828_-\|DUF624-domain-containing-protein	unknown	unknown	gnl\|CDD\|377412
NZ_CP021557.1\|WP_032740033.1\|2164746_2168505_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP021557.1\|WP_019727591.1\|2161539_2162061_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP021557.1\|WP_080568429.1\|2162636_2162864_+\|DUF1684-domain-containing-protein	unknown	unknown	gnl\|CDD\|377941
NZ_CP021557.1\|WP_100199007.1\|2177017_2177716_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP021557.1\|WP_003829589.1\|2177802_2178180_+\|DUF4235-domain-containing-protein	unknown	unknown	gnl\|CDD\|379422
NZ_CP021557.1\|WP_015439325.1\|2174044_2175061_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP021557.1\|WP_003829607.1\|2168514_2169216_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP021557.1\|WP_042994367.1\|2162970_2164494_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP021557.1\|WP_015439323.1\|2169698_2171171_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP021557.1\|WP_003829602.1\|2171977_2172820_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP021557.1\|WP_019727589.1\|2157526_2159356_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP021557.1\|WP_106631046.1\|2175268_2176597_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379175
NZ_CP021557.1\|WP_014484409.1\|2172819_2173674_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP021557.1\|WP_077420399.1\|2179209_2181957_+\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428

Protein	Function_ID	Function_description	E-value
NZ_CP021557.1\|WP_106621145.1\|2153374_2154424_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	6.41448e-106
NZ_CP021557.1\|WP_016462703.1\|2156576_2157518_+\|FAD:protein-FMN-transferase	gnl\|CDD\|376782	pfam02424, ApbE, ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. It acts as an FAD:protein FMN-transferase, catalyzing the attachment of an FMN residue to a threonine residue of a protein via a phosphoester bond in such bacterial flavoproteins.	3.23537e-23
NZ_CP021557.1\|WP_065452615.1\|2178275_2179043_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	6.52044e-79
NZ_CP021557.1\|WP_106621146.1\|2155053_2156472_-\|sodium:solute-symporter	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.91398e-45
NZ_CP021557.1\|WP_106631045.1\|2159487_2161356_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.96539e-142
NZ_CP021557.1\|WP_015439324.1\|2171222_2171828_-\|DUF624-domain-containing-protein	gnl\|CDD\|377412	pfam04854, DUF624, Protein of unknown function, DUF624. This family includes several uncharacterized bacterial proteins.	1.2616e-07
NZ_CP021557.1\|WP_032740033.1\|2164746_2168505_-\|FtsX-like-permease-family-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.91881e-21
NZ_CP021557.1\|WP_019727591.1\|2161539_2162061_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.67897e-15
NZ_CP021557.1\|WP_080568429.1\|2162636_2162864_+\|DUF1684-domain-containing-protein	gnl\|CDD\|377941	pfam07920, DUF1684, Protein of unknown function (DUF1684). The sequences featured in this family are found in hypothetical archaeal and bacterial proteins of unknown function. The region in question is approximately 200 amino acids long.	6.16352e-25
NZ_CP021557.1\|WP_100199007.1\|2177017_2177716_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.05315e-50
NZ_CP021557.1\|WP_003829589.1\|2177802_2178180_+\|DUF4235-domain-containing-protein	gnl\|CDD\|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	4.09412e-11
NZ_CP021557.1\|WP_015439325.1\|2174044_2175061_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.61006e-78
NZ_CP021557.1\|WP_003829607.1\|2168514_2169216_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.59092e-99
NZ_CP021557.1\|WP_042994367.1\|2162970_2164494_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	2.196e-154
NZ_CP021557.1\|WP_015439323.1\|2169698_2171171_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP021557.1\|WP_003829602.1\|2171977_2172820_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.68174e-62
NZ_CP021557.1\|WP_019727589.1\|2157526_2159356_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.71034e-178
NZ_CP021557.1\|WP_106631046.1\|2175268_2176597_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|379175	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	6.91998e-35
NZ_CP021557.1\|WP_014484409.1\|2172819_2173674_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.2199e-52
NZ_CP021557.1\|WP_077420399.1\|2179209_2181957_+\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	7.61509e-89

>NZ_CP021557.1|WP_003829607.1|2168514_2169216_-|ABC-transporter-ATP-binding-protein
MAYIEFDKVVKEYPSGGTSIRALDEASFTADQGELTVILGQSGAGKTTALNILGGMDTATSGRVVVGERDITGLRKRDLITYRRNDVGFVFQFYNLVPNLTALENVELASQICPDHFDPAETLRKVGLGERMNNFPGQLSGGEQQRVSIARAIAKKPKLLLCDEPTGALDYETGKEVLQLLQDICRDEGMTVMIITHNSALAPMAHKVIHFRSGTVTSEEINTAPQPIADIEW
>NZ_CP021557.1|WP_032740033.1|2164746_2168505_-|FtsX-like-permease-family-protein
MATARHSHTGFPGGRPVKHLVKQRSQSVKRPVKQSESDDRGSSVSAVFVKDALRCWLRSWKRFVSIAVITLLGVAVLTGIYAGCRDAFLAASRFYGQQGLHDVQVLSTYGLTGDDAAALRRVEGVETVQPERSQTVTATVKGTKKTVTMQEIGTEGLDQPYLQQGDMPSKAGEVAVTQQFLNDSGLEIGDDLTVTPRSASSTVLVGAEDKSNSGSSKSSDGDTGTVGAAEDATTSNNEKEQSPQFPTELTITAVVLDPSDLNNPAGYSGMTAFRSTSSEDYVFFAPSDGVTGNVYTAISIAVAGASQYDTFSDDYDAAIKTVADRIESQIQTQRQKARRQQIVTSAQNTLDAAKADALKQLDEGQQQIDSNRAELEANETKLAESRTQLEQNKASITDGERQIAEGRAQIASARQQIAQGRQQIADARAQLESGKAQLTSARQQLDAARAELTANRSKVEQGIAQIDQGVAQLDQMLQLIQQADDLLSQLDPNIDVDSSTWQTVKQLLTSLGITVPDVPSISSLRQQLDAKQNELQSQRSDAIKQKTELQQTLDGTIAPAQNALDQQNAQLTAKEQEAAAGEAELNAKLAELESNAAQLETQSAQLEAQAAQLASGKQQLEEGEKQLKDGEQQLEDGKQQLEDAQQELDEKRSEAESEFAKQQRRIDDVANARWYVQTRSSIDGFSSLKSDVSSIESIGRAFPVVFLLVAVLMSLTTMTRMVEEDRGLIGTYLGLGYGGMVVSLRYLLFALLACLVGGGIGLLVGFLGIPAFLLIVIKGLYILPDVRLEYDWGYGTAGILLFVVGVGVATALACRSEIRHTPAALMRPKAPKAGARILLERIRPVWSRLSFLGKVTARNIFRFKSRLLMTVGGVAGCTALIICGFAINDTVDTIGVKQYGQIYQYDLMVVSNDDDAAAMRKQVKKDGRTTETLNLRVDSAEMSNAAQESETIQLMAVPNNSLNKLNDMVTLEEAGDEGWFGLPNFFGASGGGTVTLDDSGVIVAQSAANSLGVHTGDTVTVSNGGSSRAKIKVAAVVRNLIGSDVYISERLYDQKFAARGIDSSASDGESSTLTWNAMLAKLKGPDGEQAEYADRLGEESSVVKAVSCAHLEATFKFDLMAAVVALIVGLAGGLALVVLFTLANTNVSERVREMATLKVLGFYDREVHNYVNREMMILTGMGVVVGLPLGRWIGGLLTAALNMPSLYFEVEVHWYSYAIAVAATLAFALLVQLFTNPVLDRIEPVSSLKSVE
>NZ_CP021557.1|WP_042994367.1|2162970_2164494_-|amino-acid-permease
MADTNANGNAQQSGSKLKSVESLDQTNAMERGLSNRHVQFIAIGGTIGTGLFLGSGKSISLTGPSIVFVYILVGVIMFFLMRAIGEMMYRDPSQHTFINFITRYLGNGWGHFAGWTYWAALVLLGMTEITAVSTYFITFFDTFGIDLTHWKWLIELCFLVSLVSVNLIAVKVFGEVEFWFSMIKITLIGAMIVTAVVMIVVGYQYPAARIHGVDHVSPAGHAGLDNLFAGFSFAPNGWMAFLMSFQMVFFAYELLEFVGVTVSETKNPRKVLPKAVNEIIVRVLVFYVGALVAIMCIVPWTSFKPNEDGSFASPFIMVFQYAGLNWASALVFFVVITAASSSLNSLLYSAGRHLYQLSEVSPSPLLNKIGQVSDRKVPARAILVSAVLILLSPIVNAIPGVSGAFVLFSSASSAVFLFIYILTLVAHRKYRRSDDFIPDGFVMPAWKVLNTVAIVFFVFIYLTLFLADDTRNSAIAGLVWLIGFGGFSLLRERYRSRDLKAALEHKE
>NZ_CP021557.1|WP_080568429.1|2162636_2162864_+|DUF1684-domain-containing-protein
MFFSDETSGTETTGIGRIYELTAADILTLDHIDFNYAFNYPCAFSLFCTCPIPSKRNHLPFAVTAGEKTPKEYQY
>NZ_CP021557.1|WP_019727591.1|2161539_2162061_-|MarR-family-transcriptional-regulator
MGFEQEAVGELYASVWGNRSKMQREFTRGAHGEQFVLRELSFKGTQTPSQLATALQASSGRISAVLSSLEKKGWITRDIDSNDRRIIRVSLTDSGREESHRMIDEMRSAICWIFSQMGERRTREFVDLLSEFTTYMSICHPGQPRPTAEQVRGAFAERDKRVVEHMASKHAEG
>NZ_CP021557.1|WP_106631045.1|2159487_2161356_-|ABC-transporter-ATP-binding-protein
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWTAGGKMLLISLGSVCCAIITGYIAARVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVATAIAVVILLVAVVILMALVMPKFKAMQGLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAIMMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTEPIVKNGTKRAADIAKTEQTGTVEFKNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQVLVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTPAGRKREALQLAADAANDGKLTDEQMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAKEAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHRELLENCEVYRQIAESQLSESELTA
>NZ_CP021557.1|WP_019727589.1|2157526_2159356_-|ABC-transporter-ATP-binding-protein
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNSIDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRVTNDVDAIGQTLGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKVSQKYFTRQQVALGDVNGHVEEMYAGHTIVKAYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVAIVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISACKAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG
>NZ_CP021557.1|WP_016462703.1|2156576_2157518_+|FAD:protein-FMN-transferase
MTGLTEQLPHTAAFPNALGTGLLLHTASALGGDLHQHIEDLISDYENVLSRFKGDSIVGQMRVATHGGTFDFPDWTLNLFDLYDHLFSATNGAIDPCVGEDLIRLGYDKSYSSVNEPNAAEHTGAIHGRATWDHAIEHHGTTLVTHGPAALDFGACGKGYLVDLIAERLGAAQNDLRYVLDAGGDLLVHTSEPITIALEDPSDPANAVGVAEISQGAFCASSPSRRHWTDAAGHQLHHLLNAIDGVPVNSVAATWVAATPPSLATTQADGLATALFTTPAAQLRAHFPFECAILTADRSAAQSPDFPGSFFMR
>NZ_CP021557.1|WP_106621146.1|2155053_2156472_-|sodium:solute-symporter
MDNATAVSATNVSGGSLQSTIKDLPIAKVWAFAVGQFGWALLSGIISNWLVYFYQPDQETVSQGQTVFVPQGLVVLGLVTVVGGITAFARFFDAFVDPAVASLSDRCDSKAGRRMPFLKFAALPLAVVTVLVFWSPINGTSWVNAAFLFVTVIGYYIALTFYCTPYNALIAELGHDSKQQLTISTAISFTWVAGTAIAYVAPVIWGAFVPMMGRITAIRVTFTIMAAVAFACMLVPPLAIREKDYVNSQPTSESTIESLKQTFSDGEFRKFVCSDVVYWVAITTFQTGLPFFVTSLLKLPETTTTIYFVLMTGVSVLFYLPVNILANRVGKKRLLLIAFVIFTCAFAFAGALGSGVLALMPAMAQGLTLSVVGAIPMAAFGILPQAIVANIADASSKTTGQDRQGMFYAARTFAMKMGQSVAMLLFTGVSTIGMASGAGYRIAAVCAAVLCGLGGIVFAFYNEKKVLHMLGA
>NZ_CP021557.1|WP_106621145.1|2153374_2154424_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLFGLGNTGSMTSADELNEQRDAEQSVAQVSERNDGNDGIDAGEPAASQTRESAVTIPAGTVVLAATPIGNVGDASARLVAFLERADIVAAEDTRRLFDLARRLGVYVNGRVVAYHDHNERDKADGLLDQVETGATVLVVSDAGMPTINDPGLAIVRRAIERGLPVTCAPGPSAVLDALALSGLPTDRFCYEGFLPRKHAERVQYLRTLLGERRTIVFYETPHRIADSMDDLLDAFGPNRPMALCRELTKDYEQIRRGPIGEIRQSVIDDPPRGEMVLVIGGASSEEAEAAAPSTLSVEDMAVLAIDRALEDGLRIKDAIAQVVQEHPLADGSLANRKQVYAAVLEIKG
>NZ_CP021557.1|WP_015439323.1|2169698_2171171_+|amino-acid-permease
MSTTDAPKKPRETDDVPVPATLRKSLKNRHIQLIALGGAIGTGLFYGSSESIALAGPSILLAYLIGGFAIFMIVRALSEMSVEDPKAGAFSYYATRYWSKRAGFISGWNYWFNYILVSMVELAVVGSFVNYWFPAIPTWVSAAVFLVLITAANLLGVSKFGEFEFWFAIIKIVAVIAMIIGGLAVIIFALPTASGIKASFANWFTVGGGFFPNGLMGHTDNGWTGLLMALVVVMFSFGGTELIGITAGETEDPKITIPRATNDIIWRILVFYIGALGVIMAVVPWNTIDGKSSPFVQIFDSVGIHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAKQGNAPAYLGKLNSKGVPVAGVLTSAVITAIAVVVVFVWPEFAFNYLMSIATIAGIINWTMIMFTEMKFRKVVEAGGAPEDSDLAGKSGQEALDAIHFKLPFAKVTPWVVLVFLALVVVLMCFSASYRIAVIAGVIWLAILFVAYQITQAKK
>NZ_CP021557.1|WP_015439324.1|2171222_2171828_-|DUF624-domain-containing-protein
MNWLAPDSKFMRAWSNLIDGIWVNILMLVTSIPIITIGAALTAGHDACRRSIEGEGKGVTANYFRSFKANFVKATLLWLPFLVVLIALAWSWIVLQFTPLLIIKFALTIIWLIGFEWVFALQARFENTVAGTLKNAFIFGISHIAMTAALVVVDAVFVALLVGSWFYMPGGLFLLVILGYGTMLMLHIPVTERVFKPYLQQ
>NZ_CP021557.1|WP_003829602.1|2171977_2172820_-|carbohydrate-ABC-transporter-permease
MNENKPVKHGALWTVLFAVVSLFWIFPIVLVLINSFKQKAYISKNAFSLPAGKAFVGFENYVRGVETTQFFASFGWTLLITVGSVILILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVPFQMVMFTLSKIADMLKLNTPWGLCIVYLGFGAGLAVFIFTGVIKGIPAELEESAMIDGASVPRIFFQIVVPIMKPSIVSVAILEAMWIWNDYLLPYLTLDLGKYKTISVAVQYLKGGYGSVDMGAMMACLVLAIIPIIVFYLVCQKYIVSGVMAGAVKG
>NZ_CP021557.1|WP_014484409.1|2172819_2173674_-|sugar-ABC-transporter-permease
MISMAGKAIRRWWALFALPTFAAFIIGFLVPFIMGVYLSFCEFTTVTDGEWIGLKNYTKALKDKEFLHALGFSTAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGIILGYIWLLLLNGVLAHWGRALTYKASYGFWGLVILVCWQQIGYMMIIYIAGLQALPTDVLEAAAVDGANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGAPSNMSEGLALNITRTFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA
>NZ_CP021557.1|WP_015439325.1|2174044_2175061_+|LacI-family-transcriptional-regulator
MTTSIQDVAQKAGVSISTVSRSFTRPDLVSTKTRERVLAIADELNFSLSRSAAALKSGRSLRIAVLMSGHIRLWFTASVIEGLNEVLHAAGYDISVFQISSIEERREFFEMLPVRRNADAVIVVSFDIDNNEITQLASADVPIIGINSVDPEVRGFTAAVNINDVQGSTLAARHLINLGHRDIAYISTDRDVSLNFSVQNRFGAFTECCRNEGIEPQVIVCKVDDAGRYQISDVVTQLMSLPKLPTAIACQEDGIALPLMFQLERNGLSVPGDVSLIGYDDSFYTDDIGLTTIRQNPVGMARKAAHMTLDLIEEKPVDEPYVVAPAHLVVRSSTAKIR
>NZ_CP021557.1|WP_106631046.1|2175268_2176597_-|ABC-transporter-substrate-binding-protein
MMNRTVKSAVAVAAIAAMSLGTLAACGSSTSGDDSKGKVYYLNFKPEAADQWAALAKEYTKEKGVEVKVQTAASGTYEQTLKSEIAKTEAPTLFQVNGPVGYQNWKKYTADMSKTDVYKELTNQDVALKDGDKVVGVPYVMETYGLIYNKDILNKYFALDGAKATSMDEIDNFDTLKAVADDMQSRKDELGIKGAFTSAGFDSSSDWRFKTHLANLPLYYEFKDDNVTEQPAKIKGTYLPNYKKIFDLYITDSTTEPTQLSAKTGDDANSEFALGEAAFYQNGTWAWTDLQKAGMKAESVGMMPIYIGVKGEEKQGLATGSENYWCINDKASDADKKATEDFLSWVITSDAGKKALSQDMGFTTPFKTFDDVKSDNPLTEAAVEDQKSGKTQVSWNFTMMPSEEWKNKIGQALLEYAQGTGNWDAVKTTFVDGWASEYEASH
>NZ_CP021557.1|WP_100199007.1|2177017_2177716_-|histidine-phosphatase-family-protein
MDGTVAVDASCGKAGFLVLLRHGQTFWSESGQHTGRTNIPLTEVGRQQAMDAGARLREAFPEGFDPECVFSSPLKRACQTAELAGFAQHGILDGIAEWDYGRAEGRTRQQVSEASGFSWDVWRDGPRSLTPTLEGDWVDTLPDGEQVNVHSGAGETLDEVAARARTAIEEVTPLLQSGRNVLLVAHAHILRILTSQWLNVDPQFARLLRLDTAHYSVLSVYKGDNVIERWNA
>NZ_CP021557.1|WP_003829589.1|2177802_2178180_+|DUF4235-domain-containing-protein
MSDETSTGIASDADRVVEGLHRIDQKVDDLRNQRLNDPDSLGDKLVKSAVPALAGLVAGKLFQIAWDKGAARRNVIKGLAADAPQGLAMSLAFAAISAAFGAIVSQLSNQGSQAFVERRHRKASR
>NZ_CP021557.1|WP_065452615.1|2178275_2179043_+|NADPH-dependent-oxidoreductase
MATNATIETLLNRRSIRKFKDEPIDDDTTATLETVAQHAASSQFLNDWSAIRVSDPAIKARLAEIGNQPYIATAPLLYVFVIDEHRNARIAQRKGIDPASDEFHLKYSYRFTQAQNDAVLALHAMETAAYSLGLGGVILGSLLNDIPALIDLLNLPEYTYPVLGLALGKPDQEPTLKPRMPRSMQFFDNTYPADADGMLEQLPDFDNKVHQYYDLRQTDRPVDAFSDQIASVSRQGISGKTLLDKAAAQGFQLDK
>NZ_CP021557.1|WP_077420399.1|2179209_2181957_+|YhgE/Pip-domain-containing-protein
MRTVWQVFLRDCKRILRNPVAAVVTLGVAVLPSLYAWFNILANWDPYSATGNLQVAVANEDRGTTNDLVGHLNAGKQVVIELKHNDQLGWRFVSNEEQAVQGVQTGDYYAAIVLPKDFSASLVDSLTGTSKQPKIKYYVNEKKNAIAPKITDTGATTIDEQINSTFVTTVSNTVAAAISQAGDDLDQATNSTQNNVVADLGSVLSTIATVQDALTDLRTTLDQSDTALADARSTTASLQRSITAAQQASQQSGALLAETQDGSQVFAASLVSALDTSSAQLSGLTVNVNNAAGTINQSFNTAQNSVDTITNALNSPLDKTATSLDTLKDALNKAGISADTTDPTGKRIWDHINAIDDAISTQQAKINTFHEDTTRFIDSGKSATTNLSGAMSGTATGGIAALNTARSSLTGTVMPSLTSSLNSFAALNGTLGGTLTSLSGTLDQTNGLFDQLSSTIAQTRTTIGSAQDSLNQIIDDVSTVRTDVATLDSSAVYQKIRDTMHLDDKGFGEFMGSPVTLTTKVVYAIDNYGSAVTPFYTNLALWVGGFVLIAIYKLEVDRESIRRINAKQAYLGRWMLLVTIGFLQAIIATVGDLVLGIQCEHPLLFILAGIFCSFIYINIIYALAVAFRHIGKAIAVILVIVQIPGASGLYPIEMMPDFFRKLHPWLPFTYGINAMRGPIAGTYSNHYWLDMLHLFWYLPAALFVGLVVRRYAMNLNALFDRRLGDTDLMITEHNSMVNEQVSLASVFRTVSDSKELKAIITRRAHRFFARYPMMIVAGLALLTILPFVFLILLFVTQEKIAMLTSWILSIILIDAYLIVVEYTRESYAMQLGVSAMNADEFRDVMLNGYVWRRFRSHGRHEAASAESAVDTDPDIGEVTEQLTPFERTGSTDSSDSSKSSESTITDTNPAQGGAR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP021557_2	2.5\|1676815\|32\|NZ_CP021557\|CRISPRCasFinder	1676815-1676846	32	NZ_CP021557.1	1323735-1323766	0	1.0
NZ_CP021557_2	2.14\|1676814\|33\|NZ_CP021557\|CRT,PILER-CR	1676814-1676846	33	NZ_CP021557.1	1323734-1323766	0	1.0
NZ_CP021557_3	3.1\|2024035\|36\|NZ_CP021557\|CRISPRCasFinder	2024035-2024070	36	NZ_CP021557.1	2025372-2025407	1	0.972

1. spacer 2.5|1676815|32|NZ_CP021557|CRISPRCasFinder matches to position: 1323735-1323766, mismatch: 0, identity: 1.0

gaatcggaagcgtcgttccaatcagatgaaag	CRISPR spacer
gaatcggaagcgtcgttccaatcagatgaaag	Protospacer
********************************

2. spacer 2.14|1676814|33|NZ_CP021557|CRT,PILER-CR matches to position: 1323734-1323766, mismatch: 0, identity: 1.0

agaatcggaagcgtcgttccaatcagatgaaag	CRISPR spacer
agaatcggaagcgtcgttccaatcagatgaaag	Protospacer
*********************************

3. spacer 3.1|2024035|36|NZ_CP021557|CRISPRCasFinder matches to position: 2025372-2025407, mismatch: 1, identity: 0.972

tcaaagccaatgacagatatttaggaaaccaacccc	CRISPR spacer
tcaaagccaatgacagatatttaggaaatcaacccc	Protospacer
****************************.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021557_2	2.9\|1677082\|33\|NZ_CP021557\|CRISPRCasFinder	1677082-1677114	33	JQ680367	Unidentified phage clone 2203_scaffold802 genomic sequence	33341-33373	7	0.788
NZ_CP021557_2	2.9\|1677082\|33\|NZ_CP021557\|CRISPRCasFinder	1677082-1677114	33	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	889495-889527	7	0.788
NZ_CP021557_2	2.15\|1676880\|34\|NZ_CP021557\|CRT,PILER-CR	1676880-1676913	34	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	231055-231088	7	0.794
NZ_CP021557_2	2.18\|1677081\|34\|NZ_CP021557\|CRT,PILER-CR	1677081-1677114	34	JQ680367	Unidentified phage clone 2203_scaffold802 genomic sequence	33341-33374	8	0.765
NZ_CP021557_2	2.18\|1677081\|34\|NZ_CP021557\|CRT,PILER-CR	1677081-1677114	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	889494-889527	8	0.765
NZ_CP021557_2	2.6\|1676881\|33\|NZ_CP021557\|CRISPRCasFinder	1676881-1676913	33	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	231055-231087	9	0.727
NZ_CP021557_2	2.9\|1677082\|33\|NZ_CP021557\|CRISPRCasFinder	1677082-1677114	33	NZ_CP015741	Shinella sp. HZN7 plasmid pShin-05, complete sequence	103966-103998	9	0.727
NZ_CP021557_2	2.9\|1677082\|33\|NZ_CP021557\|CRISPRCasFinder	1677082-1677114	33	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1530504-1530536	10	0.697
NZ_CP021557_2	2.18\|1677081\|34\|NZ_CP021557\|CRT,PILER-CR	1677081-1677114	34	NZ_CP015741	Shinella sp. HZN7 plasmid pShin-05, complete sequence	103965-103998	10	0.706
NZ_CP021557_2	2.18\|1677081\|34\|NZ_CP021557\|CRT,PILER-CR	1677081-1677114	34	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1530504-1530537	11	0.676

1. spacer 2.9|1677082|33|NZ_CP021557|CRISPRCasFinder matches to JQ680367 (Unidentified phage clone 2203_scaffold802 genomic sequence) position: , mismatch: 7, identity: 0.788

ccccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
gccatagccgatattcaggccgatttcgtcacg	Protospacer
 ** *   ****.*** ****************

2. spacer 2.9|1677082|33|NZ_CP021557|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.788

ccccttcgcgatgttctggccgatttcgtcacg-	CRISPR spacer
aacatttgcgatgctctggccgatttcg-cgcgc	Protospacer
  * **.******.************** *.**

3. spacer 2.15|1676880|34|NZ_CP021557|CRT,PILER-CR matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

atccg--ggtgtgattttgaagaccctgcttgacga	CRISPR spacer
--ccggcgaggtgattttgatgaccctgcttggcgg	Protospacer
  ***  *. ********** ***********.**.

4. spacer 2.18|1677081|34|NZ_CP021557|CRT,PILER-CR matches to JQ680367 (Unidentified phage clone 2203_scaffold802 genomic sequence) position: , mismatch: 8, identity: 0.765

accccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
cgccatagccgatattcaggccgatttcgtcacg	Protospacer
  ** *   ****.*** ****************

5. spacer 2.18|1677081|34|NZ_CP021557|CRT,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.765

accccttcgcgatgttctggccgatttcgtcacg-	CRISPR spacer
caacatttgcgatgctctggccgatttcg-cgcgc	Protospacer
   * **.******.************** *.**

6. spacer 2.6|1676881|33|NZ_CP021557|CRISPRCasFinder matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tccgggtgtgattttgaagaccctgcttgacga	CRISPR spacer
cggcgaggtgattttgatgaccctgcttggcgg	Protospacer
.   *. ********** ***********.**.

7. spacer 2.9|1677082|33|NZ_CP021557|CRISPRCasFinder matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 9, identity: 0.727

ccccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
tagccgcgcgatgtcctggccgatttcgtcgat	Protospacer
.  *. ********.***************.

8. spacer 2.9|1677082|33|NZ_CP021557|CRISPRCasFinder matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.697

ccccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
gtacttcgcgctgtgctggccgatttcgctctt	Protospacer
 . ******* *** *************.. .

9. spacer 2.18|1677081|34|NZ_CP021557|CRT,PILER-CR matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 10, identity: 0.706

accccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
gtagccgcgcgatgtcctggccgatttcgtcgat	Protospacer
..  *. ********.***************.

10. spacer 2.18|1677081|34|NZ_CP021557|CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 11, identity: 0.676

accccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
tgtacttcgcgctgtgctggccgatttcgctctt	Protospacer
  . ******* *** *************.. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1142113 : 1200428

Bifidobacterium_phage(38.1%)

portal,terminase,transposase,tail,coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041473262.1\|1142113_1143595_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_014483316.1\|1143597_1144383_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.7e-37	38.0
WP_157825923.1\|1144509_1145394_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.6e-44	38.1
WP_003829322.1\|1145533_1146457_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003829323.1\|1146497_1147127_-	HAD family phosphatase	NA	NA	NA	NA
WP_003831190.1\|1147317_1149081_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_003831188.1\|1149252_1150854_+	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	9.4e-51	29.0
WP_003829327.1\|1150915_1151623_+	SDR family NAD(P)-dependent oxidoreductase	A0A0K0KVL6	Prochlorococcus_phage	2.7e-10	32.0
WP_003829332.1\|1153278_1154469_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_095256938.1\|1154745_1157694_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	7.3e-291	52.3
WP_106630937.1\|1157850_1160265_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_106630939.1\|1160504_1161485_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_025332270.1\|1161484_1162450_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.3e-07	31.4
WP_003829339.1\|1162606_1163557_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.2e-06	20.4
WP_065458018.1\|1163715_1164921_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_025299821.1\|1165069_1165873_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_003829342.1\|1165936_1166185_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_106630940.1\|1166277_1167228_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_052829202.1\|1167224_1168076_+	HAD family hydrolase	NA	NA	NA	NA
WP_003831845.1\|1168194_1169730_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	O34035	Streptococcus_phage	3.6e-07	43.5
WP_003829346.1\|1170221_1171406_-	hypothetical protein	NA	NA	NA	NA
WP_042994084.1\|1171578_1172916_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_003829348.1\|1173262_1174366_-	transaldolase	NA	NA	NA	NA
WP_007052792.1\|1174485_1176594_-	transketolase	NA	NA	NA	NA
WP_025262978.1\|1176854_1177952_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_003829351.1\|1178006_1179152_+	molecular chaperone DnaJ	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	5.6e-21	28.9
WP_143246996.1\|1179411_1179603_+	hypothetical protein	NA	NA	NA	NA
WP_157824049.1\|1179627_1180497_+	S49 family peptidase	NA	NA	NA	NA
WP_060618564.1\|1180575_1181265_-	hypothetical protein	Q8HA43	Streptococcus_phage	1.2e-05	28.5
WP_077149488.1\|1181261_1181699_-	hypothetical protein	I3NL83	Bifidobacterium_phage	4.0e-28	62.1
WP_143247959.1\|1181734_1182103_-	hypothetical protein	NA	NA	NA	NA
WP_052829195.1\|1182132_1182429_-	hypothetical protein	NA	NA	NA	NA
WP_052829194.1\|1182447_1185681_-	hypothetical protein	NA	NA	NA	NA
WP_052829193.1\|1185691_1186900_-	hypothetical protein	NA	NA	NA	NA
WP_052829192.1\|1186899_1187844_-	hypothetical protein	NA	NA	NA	NA
WP_052829191.1\|1187903_1188800_-	hypothetical protein	NA	NA	NA	NA
WP_052829190.1\|1188796_1192135_-\|tail	phage tail tape measure protein	I3NL90	Bifidobacterium_phage	4.5e-188	48.1
WP_016463003.1\|1192151_1192448_-	hypothetical protein	I3NL91	Bifidobacterium_phage	2.3e-35	65.3
WP_016463002.1\|1192519_1193014_-	hypothetical protein	I3NL92	Bifidobacterium_phage	4.6e-57	71.2
WP_052829189.1\|1193189_1193723_-	hypothetical protein	I3NL93	Bifidobacterium_phage	3.4e-82	87.8
WP_016463000.1\|1193795_1194212_-	hypothetical protein	I3NL94	Bifidobacterium_phage	1.0e-41	61.6
WP_106622479.1\|1194208_1194598_-	hypothetical protein	I3NL95	Bifidobacterium_phage	3.2e-37	62.3
WP_016462998.1\|1194599_1195022_-	hypothetical protein	I3NL96	Bifidobacterium_phage	6.3e-39	86.4
WP_016462997.1\|1195018_1195603_-	hypothetical protein	NA	NA	NA	NA
WP_106630941.1\|1195667_1196525_-\|coat	coat protein	A0A1L2JY55	Aeribacillus_phage	1.8e-61	49.3
WP_016462995.1\|1196541_1197156_-	hypothetical protein	NA	NA	NA	NA
WP_106631079.1\|1197179_1198340_-	hypothetical protein	NA	NA	NA	NA
WP_106630942.1\|1198281_1199775_-\|portal	phage portal protein	D7NW49	Streptomyces_phage	1.1e-58	32.1
WP_106630943.1\|1199777_1200428_-\|terminase	terminase	A0A1C9EHV3	Gordonia_phage	2.2e-59	55.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021557

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection