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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021556 Bifidobacterium breve strain 139W423 chromosome, complete genome 4 crisprs cas3,c2c9_V-U4,WYL 2 7 4 0

Results visualization

1. NZ_CP021556
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021556_1 152221-152557 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021556_2 748428-748501 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021556_3 1784958-1785733 Orphan I-C
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021556_4 2295023-2295099 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP021556_3 3.10|1785599|34|NZ_CP021556|CRISPRCasFinder 1785599-1785632 34 NZ_CP021556.1 422019-422052 1 0.971
NZ_CP021556_3 3.21|1785598|35|NZ_CP021556|CRT,PILER-CR 1785598-1785632 35 NZ_CP021556.1 422018-422052 1 0.971

1. spacer 3.10|1785599|34|NZ_CP021556|CRISPRCasFinder matches to position: 422019-422052, mismatch: 1, identity: 0.971

cggcctgccatgcggtgaggttgcgtcccggttt	CRISPR spacer
cggcctgccatgcggcgaggttgcgtcccggttt	Protospacer
***************.******************

2. spacer 3.21|1785598|35|NZ_CP021556|CRT,PILER-CR matches to position: 422018-422052, mismatch: 1, identity: 0.971

acggcctgccatgcggtgaggttgcgtcccggttt	CRISPR spacer
acggcctgccatgcggcgaggttgcgtcccggttt	Protospacer
****************.******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021556_1 1.1|152246|27|NZ_CP021556|CRISPRCasFinder 152246-152272 27 NZ_CP040452 Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence 1743549-1743575 6 0.778
NZ_CP021556_3 3.11|1785667|33|NZ_CP021556|CRISPRCasFinder 1785667-1785699 33 JQ680367 Unidentified phage clone 2203_scaffold802 genomic sequence 33341-33373 7 0.788
NZ_CP021556_3 3.11|1785667|33|NZ_CP021556|CRISPRCasFinder 1785667-1785699 33 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 889495-889527 7 0.788
NZ_CP021556_3 3.19|1785465|34|NZ_CP021556|CRT,PILER-CR 1785465-1785498 34 NZ_CP017887 Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence 231055-231088 7 0.794
NZ_CP021556_3 3.22|1785666|34|NZ_CP021556|CRT,PILER-CR 1785666-1785699 34 JQ680367 Unidentified phage clone 2203_scaffold802 genomic sequence 33341-33374 8 0.765
NZ_CP021556_3 3.22|1785666|34|NZ_CP021556|CRT,PILER-CR 1785666-1785699 34 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 889494-889527 8 0.765
NZ_CP021556_3 3.8|1785466|33|NZ_CP021556|CRISPRCasFinder 1785466-1785498 33 NZ_CP017887 Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence 231055-231087 9 0.727
NZ_CP021556_3 3.11|1785667|33|NZ_CP021556|CRISPRCasFinder 1785667-1785699 33 NZ_CP015741 Shinella sp. HZN7 plasmid pShin-05, complete sequence 103966-103998 9 0.727
NZ_CP021556_3 3.4|1785197|33|NZ_CP021556|CRISPRCasFinder 1785197-1785229 33 NZ_CP049157 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence 1684394-1684426 10 0.697
NZ_CP021556_3 3.4|1785197|33|NZ_CP021556|CRISPRCasFinder 1785197-1785229 33 NZ_CP049317 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence 1950644-1950676 10 0.697
NZ_CP021556_3 3.11|1785667|33|NZ_CP021556|CRISPRCasFinder 1785667-1785699 33 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 1530504-1530536 10 0.697
NZ_CP021556_3 3.22|1785666|34|NZ_CP021556|CRT,PILER-CR 1785666-1785699 34 NZ_CP015741 Shinella sp. HZN7 plasmid pShin-05, complete sequence 103965-103998 10 0.706
NZ_CP021556_3 3.15|1785196|34|NZ_CP021556|CRT,PILER-CR 1785196-1785229 34 NZ_CP049157 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence 1684394-1684427 11 0.676
NZ_CP021556_3 3.15|1785196|34|NZ_CP021556|CRT,PILER-CR 1785196-1785229 34 NZ_CP049317 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence 1950643-1950676 11 0.676
NZ_CP021556_3 3.22|1785666|34|NZ_CP021556|CRT,PILER-CR 1785666-1785699 34 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 1530504-1530537 11 0.676

1. spacer 1.1|152246|27|NZ_CP021556|CRISPRCasFinder matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

cgttgttagcggtgcttctttaccagc	CRISPR spacer
cgctgttagcggtgctgctttacgcca	Protospacer
**.************* ******    

2. spacer 3.11|1785667|33|NZ_CP021556|CRISPRCasFinder matches to JQ680367 (Unidentified phage clone 2203_scaffold802 genomic sequence) position: , mismatch: 7, identity: 0.788

ccccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
gccatagccgatattcaggccgatttcgtcacg	Protospacer
 ** *   ****.*** ****************

3. spacer 3.11|1785667|33|NZ_CP021556|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.788

ccccttcgcgatgttctggccgatttcgtcacg-	CRISPR spacer
aacatttgcgatgctctggccgatttcg-cgcgc	Protospacer
  * **.******.************** *.** 

4. spacer 3.19|1785465|34|NZ_CP021556|CRT,PILER-CR matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

atccg--ggtgtgattttgaagaccctgcttgacga	CRISPR spacer
--ccggcgaggtgattttgatgaccctgcttggcgg	Protospacer
  ***  *. ********** ***********.**.

5. spacer 3.22|1785666|34|NZ_CP021556|CRT,PILER-CR matches to JQ680367 (Unidentified phage clone 2203_scaffold802 genomic sequence) position: , mismatch: 8, identity: 0.765

accccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
cgccatagccgatattcaggccgatttcgtcacg	Protospacer
  ** *   ****.*** ****************

6. spacer 3.22|1785666|34|NZ_CP021556|CRT,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.765

accccttcgcgatgttctggccgatttcgtcacg-	CRISPR spacer
caacatttgcgatgctctggccgatttcg-cgcgc	Protospacer
   * **.******.************** *.** 

7. spacer 3.8|1785466|33|NZ_CP021556|CRISPRCasFinder matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tccgggtgtgattttgaagaccctgcttgacga	CRISPR spacer
cggcgaggtgattttgatgaccctgcttggcgg	Protospacer
.   *. ********** ***********.**.

8. spacer 3.11|1785667|33|NZ_CP021556|CRISPRCasFinder matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 9, identity: 0.727

ccccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
tagccgcgcgatgtcctggccgatttcgtcgat	Protospacer
.  *. ********.***************.  

9. spacer 3.4|1785197|33|NZ_CP021556|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 10, identity: 0.697

tccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
tccggtgcctgctcacaaggacagacgaagctc	Protospacer
****.******** **********. .*.  ..

10. spacer 3.4|1785197|33|NZ_CP021556|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 10, identity: 0.697

tccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
tccggtgcctgctcacaaggacagacgaagctc	Protospacer
****.******** **********. .*.  ..

11. spacer 3.11|1785667|33|NZ_CP021556|CRISPRCasFinder matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.697

ccccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
gtacttcgcgctgtgctggccgatttcgctctt	Protospacer
 . ******* *** *************.. . 

12. spacer 3.22|1785666|34|NZ_CP021556|CRT,PILER-CR matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 10, identity: 0.706

accccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
gtagccgcgcgatgtcctggccgatttcgtcgat	Protospacer
..  *. ********.***************.  

13. spacer 3.15|1785196|34|NZ_CP021556|CRT,PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
ttccggtgcctgctcacaaggacagacgaagctc	Protospacer
 ****.******** **********. .*.  ..

14. spacer 3.15|1785196|34|NZ_CP021556|CRT,PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
ttccggtgcctgctcacaaggacagacgaagctc	Protospacer
 ****.******** **********. .*.  ..

15. spacer 3.22|1785666|34|NZ_CP021556|CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 11, identity: 0.676

accccttcgcgatgttctggccgatttcgtcacg	CRISPR spacer
tgtacttcgcgctgtgctggccgatttcgctctt	Protospacer
  . ******* *** *************.. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 430340 : 483865 48 Marinomonas_phage(12.5%) transposase,head,portal,protease NA
DBSCAN-SWA_2 912220 : 981132 57 Streptococcus_phage(23.08%) transposase,tRNA,integrase attL 978443:978462|attR 993235:993254
DBSCAN-SWA_3 1044372 : 1086181 34 Agrobacterium_phage(21.43%) transposase,protease NA
DBSCAN-SWA_4 1302896 : 1325628 29 Bifidobacterium_phage(53.85%) coat,integrase,portal,terminase,holin attL 1290887:1290902|attR 1327790:1327805
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage