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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP023198 Bifidobacterium breve strain DRBB29 chromosome, complete genome 5 crisprs DEDDh,cas3,WYL 0 8 3 0

Results visualization

1. NZ_CP023198
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023198_1 132790-133126 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023198_2 363721-363896 Orphan NA
2 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023198_3 441246-441555 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023198_4 2173362-2173507 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023198_5 2236355-2236636 Orphan NA
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP023198_2 2.1|363765|22|NZ_CP023198|PILER-CR 363765-363786 22 NC_011758 Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence 256125-256146 2 0.909
NZ_CP023198_1 1.4|132971|27|NZ_CP023198|CRISPRCasFinder 132971-132997 27 MK512531 Xanthomonas phage Cf2, complete genome 785-811 5 0.815
NZ_CP023198_3 3.3|441385|26|NZ_CP023198|CRT 441385-441410 26 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 158326-158351 5 0.808
NZ_CP023198_3 3.5|441502|26|NZ_CP023198|CRT 441502-441527 26 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 158326-158351 5 0.808
NZ_CP023198_5 5.1|2236378|29|NZ_CP023198|CRISPRCasFinder 2236378-2236406 29 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 760234-760262 6 0.793
NZ_CP023198_5 5.4|2236533|29|NZ_CP023198|CRISPRCasFinder 2236533-2236561 29 NZ_CP030127 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence 786029-786057 6 0.793
NZ_CP023198_1 1.1|132815|27|NZ_CP023198|CRISPRCasFinder 132815-132841 27 NC_010580 Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01, complete sequence 89156-89182 7 0.741
NZ_CP023198_5 5.1|2236378|29|NZ_CP023198|CRISPRCasFinder 2236378-2236406 29 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 3552499-3552527 7 0.759
NZ_CP023198_5 5.1|2236378|29|NZ_CP023198|CRISPRCasFinder 2236378-2236406 29 JQ691611 Cronobacter phage CR9, complete genome 50136-50164 7 0.759
NZ_CP023198_5 5.4|2236533|29|NZ_CP023198|CRISPRCasFinder 2236533-2236561 29 NZ_CP049157 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence 1714294-1714322 7 0.759
NZ_CP023198_5 5.4|2236533|29|NZ_CP023198|CRISPRCasFinder 2236533-2236561 29 JX131330 Pseudomonas phage MP1412, complete genome 43276-43304 7 0.759
NZ_CP023198_5 5.4|2236533|29|NZ_CP023198|CRISPRCasFinder 2236533-2236561 29 NZ_CP049317 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence 1920748-1920776 7 0.759
NZ_CP023198_3 3.6|441439|33|NZ_CP023198|PILER-CR 441439-441471 33 NZ_LR134455 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence 232231-232263 8 0.758

1. spacer 2.1|363765|22|NZ_CP023198|PILER-CR matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 2, identity: 0.909

acgcggtcaagtccgtcgcatc	CRISPR spacer
acgcggtcaagtccggcgcatt	Protospacer
*************** *****.

2. spacer 1.4|132971|27|NZ_CP023198|CRISPRCasFinder matches to MK512531 (Xanthomonas phage Cf2, complete genome) position: , mismatch: 5, identity: 0.815

ggttgcggatggtgcggagcccccatg----	CRISPR spacer
gcttgcggatggtgcggagcc----tggtgc	Protospacer
* *******************    **    

3. spacer 3.3|441385|26|NZ_CP023198|CRT matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 5, identity: 0.808

cgatttcgaggatgactacgaggatc	CRISPR spacer
cgatttcgaggatgactgcgagcgct	Protospacer
*****************.**** ...

4. spacer 3.5|441502|26|NZ_CP023198|CRT matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 5, identity: 0.808

cgatttcgaggatgactacgaggatc	CRISPR spacer
cgatttcgaggatgactgcgagcgct	Protospacer
*****************.**** ...

5. spacer 5.1|2236378|29|NZ_CP023198|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.793

ccgaagaaccaccccaccgagagccactc	CRISPR spacer
gcccagaaccaccccgccgagcgccacac	Protospacer
 *  ***********.***** ***** *

6. spacer 5.4|2236533|29|NZ_CP023198|CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

tcgaaagaccaccacgctgaaagccactc	CRISPR spacer
cggcaagaccaccacgctgaaagccatca	Protospacer
. * **********************.. 

7. spacer 1.1|132815|27|NZ_CP023198|CRISPRCasFinder matches to NC_010580 (Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01, complete sequence) position: , mismatch: 7, identity: 0.741

cgttgttagcggtacttttttaccagc	CRISPR spacer
gctggttagcggtacttttttacagat	Protospacer
  * ******************* ...

8. spacer 5.1|2236378|29|NZ_CP023198|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.759

ccgaagaaccaccccaccgagagccactc	CRISPR spacer
acgaagaacgacgccaccgagagcaccag	Protospacer
 ******** ** ***********  *  

9. spacer 5.1|2236378|29|NZ_CP023198|CRISPRCasFinder matches to JQ691611 (Cronobacter phage CR9, complete genome) position: , mismatch: 7, identity: 0.759

ccgaagaaccaccccaccgagagccactc	CRISPR spacer
gggaagaaccaccccaccaggagccgcca	Protospacer
  ****************..*****.*. 

10. spacer 5.4|2236533|29|NZ_CP023198|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 7, identity: 0.759

tcgaaagaccaccacgctgaaagccactc	CRISPR spacer
agaaaacaccaccacgcttaaagccaagc	Protospacer
  .*** *********** *******  *

11. spacer 5.4|2236533|29|NZ_CP023198|CRISPRCasFinder matches to JX131330 (Pseudomonas phage MP1412, complete genome) position: , mismatch: 7, identity: 0.759

tcgaaagaccaccacgctgaaagccactc	CRISPR spacer
gcccaagaccaccacgctgaaggcccagc	Protospacer
 *  *****************.***   *

12. spacer 5.4|2236533|29|NZ_CP023198|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 7, identity: 0.759

tcgaaagaccaccacgctgaaagccactc	CRISPR spacer
agaaaacaccaccacgcttaaagccaagc	Protospacer
  .*** *********** *******  *

13. spacer 3.6|441439|33|NZ_CP023198|PILER-CR matches to NZ_LR134455 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence) position: , mismatch: 8, identity: 0.758

cgacttcgaccgtgacgaccgcgattcccgcga	CRISPR spacer
ccgcggcgaccgtgacgacctcgagtcccgcat	Protospacer
* .*  ************** *** ******. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 352489 : 377529 27 Bifidobacterium_phage(26.67%) integrase,tail,capsid,terminase,portal,holin attL 362914:362930|attR 386280:386296
DBSCAN-SWA_2 759286 : 813439 48 Staphylococcus_phage(11.76%) capsid,terminase,portal,transposase,holin NA
DBSCAN-SWA_3 1417201 : 1473424 49 Staphylococcus_phage(25.0%) integrase,tRNA,transposase attL 1464868:1464927|attR 1473430:1473945
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage