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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP023199 Bifidobacterium breve strain DRBB30 chromosome, complete genome 5 crisprs DEDDh,cas3,WYL 0 5 2 0

Results visualization

1. NZ_CP023199
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023199_1 130207-130543 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023199_2 383570-383745 Orphan NA
2 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023199_3 454619-454923 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023199_4 2202174-2202320 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023199_5 2364879-2364955 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP023199_2 2.1|383614|22|NZ_CP023199|PILER-CR 383614-383635 22 NC_011758 Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence 256125-256146 2 0.909
NZ_CP023199_3 3.2|454699|25|NZ_CP023199|CRISPRCasFinder 454699-454723 25 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 158326-158350 4 0.84
NZ_CP023199_3 3.4|454816|25|NZ_CP023199|CRISPRCasFinder 454816-454840 25 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 158326-158350 4 0.84
NZ_CP023199_1 1.1|130232|27|NZ_CP023199|CRISPRCasFinder 130232-130258 27 NZ_CP040452 Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence 1743549-1743575 6 0.778
NZ_CP023199_3 3.1|454642|34|NZ_CP023199|CRISPRCasFinder 454642-454675 34 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 139667-139700 6 0.824
NZ_CP023199_3 3.1|454642|34|NZ_CP023199|CRISPRCasFinder 454642-454675 34 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 1786163-1786196 7 0.794
NZ_CP023199_3 3.1|454642|34|NZ_CP023199|CRISPRCasFinder 454642-454675 34 NC_016654 Rhodococcus phage REQ3, complete genome 8845-8878 9 0.735
NZ_CP023199_3 3.1|454642|34|NZ_CP023199|CRISPRCasFinder 454642-454675 34 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 671609-671642 10 0.706
NZ_CP023199_3 3.1|454642|34|NZ_CP023199|CRISPRCasFinder 454642-454675 34 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 1652187-1652220 10 0.706
NZ_CP023199_3 3.1|454642|34|NZ_CP023199|CRISPRCasFinder 454642-454675 34 NZ_CP048421 Sphingomonas insulae strain KCTC 12872 plasmid unnamed3, complete sequence 166344-166377 11 0.676

1. spacer 2.1|383614|22|NZ_CP023199|PILER-CR matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 2, identity: 0.909

acgcggtcaagtccgtcgcatc	CRISPR spacer
acgcggtcaagtccggcgcatt	Protospacer
*************** *****.

2. spacer 3.2|454699|25|NZ_CP023199|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 4, identity: 0.84

cgatttcgaggatgactacgaggat	CRISPR spacer
cgatttcgaggatgactgcgagcgc	Protospacer
*****************.**** ..

3. spacer 3.4|454816|25|NZ_CP023199|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 4, identity: 0.84

cgatttcgaggatgactacgaggat	CRISPR spacer
cgatttcgaggatgactgcgagcgc	Protospacer
*****************.**** ..

4. spacer 1.1|130232|27|NZ_CP023199|CRISPRCasFinder matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

cgttgttagcggtgcttctttaccagc	CRISPR spacer
cgctgttagcggtgctgctttacgcca	Protospacer
**.************* ******    

5. spacer 3.1|454642|34|NZ_CP023199|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.824

ccgtg-acgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
-cgtgcgcggacgcgacttcaccgatcgcgacgac	Protospacer
 **** .**. *********. *************

6. spacer 3.1|454642|34|NZ_CP023199|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.794

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
gcgtggccatcgcgacttcgacgatcgtgctgcc	Protospacer
 ****.* *******************.* .* *

7. spacer 3.1|454642|34|NZ_CP023199|CRISPRCasFinder matches to NC_016654 (Rhodococcus phage REQ3, complete genome) position: , mismatch: 9, identity: 0.735

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
ccgtgacgaccgcgacctcgacgacgacaccacc	Protospacer
*********.******.*******. .*. *. *

8. spacer 3.1|454642|34|NZ_CP023199|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.706

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
cttttgtccccgcgacttcgacgatggcgtcgac	Protospacer
*. * ..  .*************** *** ****

9. spacer 3.1|454642|34|NZ_CP023199|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 10, identity: 0.706

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
cttttgtccccgcgacttcgacgatggcgtcgac	Protospacer
*. * ..  .*************** *** ****

10. spacer 3.1|454642|34|NZ_CP023199|CRISPRCasFinder matches to NZ_CP048421 (Sphingomonas insulae strain KCTC 12872 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

ccgtgacgatcgcgacttcgacgatcgcgacgac	CRISPR spacer
tcaaagcgatcgcgaccacgacgatcgcgatcgg	Protospacer
.*. ..**********. ************. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 351597 : 397411 63 Bifidobacterium_phage(19.23%) protease,head,tail,terminase,portal,holin,integrase attL 350982:350999|attR 401410:401427
DBSCAN-SWA_2 1560352 : 1586144 38 Bifidobacterium_phage(30.0%) capsid,protease,head,terminase,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage