CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023192	Bifidobacterium breve strain NRBB08 chromosome, complete genome	4 crisprs	cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	0	17	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023192_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023192_1

1660338-1661313

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	PILER-CR

14 spacers

cas2,cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of NZ_CP023192_1

>merge|NZ_CP023192|1|1660338-1661313|CRISPRCasFinder,CRT,PILER-CR
ATAGGAACCCACGCTCCCCAGATGGGGAGCGACGCTGGATTTGAGGGCTGCGCGGGGTATGGGGGCTTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCAGCCCTCGCTGCCGGTCTGAGCCTTGCCGTACAGATTTCAATCCACGCTCCCCGAATGGGGAGCGACTGTCCCGCTCCTTAGTACCAGTTGTGGGCGAGCCAATTTCAATCCACGCTCCCCGGATGGGGATCGACCGGTTCGGACGGCGCCATCGACCAGTGGGTGGACATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTCCGATGCCTGCTGACAAGGACAGGAAAGCACTATTTCAATCCACGCTCCCCGGATGGGGAGCGACTAGTAGATTTCCGCACCGTTGGCCTGCGACTCGAAATTTCAATCCACGCCCCCCGGATGGGGAGCGACAACGGGATGGGAGCCGTGTTCAACTGGCTGTACCTATTTCAATCCACGCTCCCCGGATGGGGAGCGACAGAATCGGAAGCGTCGTTCCAATCAGATGAAAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACATCCGGGTGTGATTTTGAAGACCCTGCTTGACGAATTTCAATCCACGTTCCCCGGATGGGGAGCGACATACACGTCGCCTTTGCCGTACATTGACGCGTAATTTCAATCCACGCTCCCCGGATGGGGAGCGACACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTTGTCGAAGTTGGGGATGCGTCCCACGTTGGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACATGTTCAGGGCGGCGTTCATGTCCCGGTCGTGCAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCGGGTTTCGGGTTCGTCTCCCTGTCGTACGCGTTATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP023192|1|1|1660338-1661313|CRISPRCasFinder
ATAGGAACCCACGCTCCCCAGATGGGGAGCGAC	GCTGGATTTGAGGGCTGCGCGGGGTATGGGGGCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGCCCTCGCTGCCGGTCTGAGCCTTGCCGTACAG
ATTTCAATCCACGCTCCCCGAATGGGGAGCGAC	TGTCCCGCTCCTTAGTACCAGTTGTGGGCGAGCCA
ATTTCAATCCACGCTCCCCGGATGGGGATCGAC	CGGTTCGGACGGCGCCATCGACCAGTGGGTGGAC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTCCGATGCCTGCTGACAAGGACAGGAAAGCACT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TAGTAGATTTCCGCACCGTTGGCCTGCGACTCGAA
ATTTCAATCCACGCCCCCCGGATGGGGAGCGAC	AACGGGATGGGAGCCGTGTTCAACTGGCTGTACCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGAATCGGAAGCGTCGTTCCAATCAGATGAAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATCCGGGTGTGATTTTGAAGACCCTGCTTGACGA
ATTTCAATCCACGTTCCCCGGATGGGGAGCGAC	ATACACGTCGCCTTTGCCGTACATTGACGCGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGTCGAAGTTGGGGATGCGTCCCACGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGTTCAGGGCGGCGTTCATGTCCCGGTCGTGCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGTTTCGGGTTCGTCTCCCTGTCGTACGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP023192|1|1|1660338-1661313|CRT
ATAGGAACCCACGCTCCCCAGATGGGGAGCGAC	GCTGGATTTGAGGGCTGCGCGGGGTATGGGGGCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGCCCTCGCTGCCGGTCTGAGCCTTGCCGTACAG
ATTTCAATCCACGCTCCCCGAATGGGGAGCGAC	TGTCCCGCTCCTTAGTACCAGTTGTGGGCGAGCCA
ATTTCAATCCACGCTCCCCGGATGGGGATCGAC	CGGTTCGGACGGCGCCATCGACCAGTGGGTGGAC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTCCGATGCCTGCTGACAAGGACAGGAAAGCACT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TAGTAGATTTCCGCACCGTTGGCCTGCGACTCGAA
ATTTCAATCCACGCCCCCCGGATGGGGAGCGAC	AACGGGATGGGAGCCGTGTTCAACTGGCTGTACCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGAATCGGAAGCGTCGTTCCAATCAGATGAAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATCCGGGTGTGATTTTGAAGACCCTGCTTGACGA
ATTTCAATCCACGTTCCCCGGATGGGGAGCGAC	ATACACGTCGCCTTTGCCGTACATTGACGCGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGTCGAAGTTGGGGATGCGTCCCACGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGTTCAGGGCGGCGTTCATGTCCCGGTCGTGCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGTTTCGGGTTCGTCTCCCTGTCGTACGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP023192|1|1|1660407-1661313|PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGCCCTCGCTGCCGGTCTGAGCCTTGCCGTACAG
ATTTCAATCCACGCTCCCCGAATGGGGAGCGAC	TGTCCCGCTCCTTAGTACCAGTTGTGGGCGAGCCA
ATTTCAATCCACGCTCCCCGGATGGGGATCGAC	CGGTTCGGACGGCGCCATCGACCAGTGGGTGGAC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTCCGATGCCTGCTGACAAGGACAGGAAAGCACT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TAGTAGATTTCCGCACCGTTGGCCTGCGACTCGAA
ATTTCAATCCACGCCCCCCGGATGGGGAGCGAC	AACGGGATGGGAGCCGTGTTCAACTGGCTGTACCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGAATCGGAAGCGTCGTTCCAATCAGATGAAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATCCGGGTGTGATTTTGAAGACCCTGCTTGACGA
ATTTCAATCCACGTTCCCCGGATGGGGAGCGAC	ATACACGTCGCCTTTGCCGTACATTGACGCGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ACGGCCTGCCATGCGGTGAGGTTGCGTCCCGGTTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGTCGAAGTTGGGGATGCGTCCCACGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGTTCAGGGCGGCGTTCATGTCCCGGTCGTGCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGTTTCGGGTTCGTCTCCCTGTCGTACGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023192.1\|WP_015439067.1\|1677689_1678394_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP023192.1\|WP_003832943.1\|1654173_1655187_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP023192.1\|WP_014483316.1\|1662397_1663183_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP023192.1\|WP_052787962.1\|1675728_1677687_-\|CRISPR-associated-protein-Cas8	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP023192.1\|WP_015438265.1\|1663185_1664667_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP023192.1\|WP_014484098.1\|1674145_1674835_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP023192.1\|WP_014484097.1\|1673112_1674144_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP023192.1\|WP_106622382.1\|1647726_1649301_-\|proteasome-ATPase	unknown	unknown	gnl\|CDD\|200312
NZ_CP023192.1\|WP_003830251.1\|1657511_1657796_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP023192.1\|WP_014484096.1\|1672072_1672306_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023192.1\|WP_014484099.1\|1674873_1675725_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP023192.1\|WP_065458422.1\|1646953_1647667_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP023192.1\|WP_106622661.1\|1658081_1659302_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP023192.1\|WP_106620615.1\|1650070_1650823_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP023192.1\|WP_080988955.1\|1655482_1657345_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP023192.1\|WP_106621056.1\|1649354_1650050_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP023192.1\|WP_106622660.1\|1650870_1653180_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_CP023192.1\|WP_025341852.1\|1665472_1666234_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP023192.1\|WP_003833383.1\|1672765_1673056_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP023192.1\|WP_003832945.1\|1653329_1654034_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790

Protein	Function_ID	Function_description	E-value
NZ_CP023192.1\|WP_015439067.1\|1677689_1678394_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.78462e-83
NZ_CP023192.1\|WP_003832943.1\|1654173_1655187_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	3.09461e-130
NZ_CP023192.1\|WP_014483316.1\|1662397_1663183_-\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	2.68478e-58
NZ_CP023192.1\|WP_052787962.1\|1675728_1677687_-\|CRISPR-associated-protein-Cas8	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	6.75798e-90
NZ_CP023192.1\|WP_015438265.1\|1663185_1664667_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.9484e-14
NZ_CP023192.1\|WP_014484098.1\|1674145_1674835_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.07596e-31
NZ_CP023192.1\|WP_014484097.1\|1673112_1674144_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.77456e-177
NZ_CP023192.1\|WP_106622382.1\|1647726_1649301_-\|proteasome-ATPase	gnl\|CDD\|200312	TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP023192.1\|WP_003830251.1\|1657511_1657796_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.88678e-17
NZ_CP023192.1\|WP_014484099.1\|1674873_1675725_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.89068e-107
NZ_CP023192.1\|WP_065458422.1\|1646953_1647667_+\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.31721e-36
NZ_CP023192.1\|WP_106622661.1\|1658081_1659302_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP023192.1\|WP_106620615.1\|1650070_1650823_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.69197e-100
NZ_CP023192.1\|WP_080988955.1\|1655482_1657345_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP023192.1\|WP_106621056.1\|1649354_1650050_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	5.33368e-44
NZ_CP023192.1\|WP_106622660.1\|1650870_1653180_+\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP023192.1\|WP_025341852.1\|1665472_1666234_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.5351e-54
NZ_CP023192.1\|WP_003833383.1\|1672765_1673056_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.39737e-29
NZ_CP023192.1\|WP_003832945.1\|1653329_1654034_+\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.32725e-46

>NZ_CP023192.1|WP_106622661.1|1658081_1659302_+|methionine-adenosyltransferase
MTEEHRLISAESVTEGHPDKVCDQISDAILDDLLAQDPSSHVAVETSAATGVFLVFGEVTSEGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGAQETAASREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGKVPHLRPDGKTQVTIEYDDNDQPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVLDEVLGSKVPHDNYRQLVNPTGSFVLGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLAHKVEIQIAYAIGVADPVSINVETFGTEQGVTRGQIAAAVRKVFDLRPAAIIDELDLKRPIYLKTAAYGHFGRTDVEFPWEKTDKVEELKAAIAGE
>NZ_CP023192.1|WP_003830251.1|1657511_1657796_+|DNA-directed-RNA-polymerase-subunit-omega
MAFGTDPTPDGLANPPIDDLMQHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREIDEGLLEETLGEDDTNEGN
>NZ_CP023192.1|WP_080988955.1|1655482_1657345_-|dihydroxy-acid-dehydratase
MTEMRSAKIMSGRVFAGARALYRAAGVSGDDMGKKPIIAIANSFDEFLPGHVHLNKVGRMVSEAIREAGGIPREFNTMAVDDGIAMGHTGMLYSLPSRDIIADTVEYQCNAHCADALICIPNCDKVVPGMLMAALRLNIPTVFVSGGPMEAGTTVLADGTVKSTDLIDVMYATADDSVSDEELLNYEKTVCPTCGSCAGMFTANSMNCLTEAIGLALPGNGTILASHSYRKDLFKRAAQQVVKIAHQYYDDSDDSVLPRSIATKEAFENAMTMDVAMGGSTNTVLHILAMAQSADVDFTLDDIERISHTVPCICKASPSGKWEISDVHRAGGITGILGELERAGKLHTNVHSIDYPTLEAKLADWDIMRPTCTEEAKQMYKAAPGHIISPEPWTHTTLFDSLDRDRVNGAIHDIDHPEIHEGGLAVLRGNLAPDGCVVKTAGVPPEIWKFRGPALVVDSQEQAIEVILNDTLKPGMALVIRYEGPKGGPGMQEMLYPTSFVKGKGIGKQVAMLTDGRYSGGSSGLAIGHMAPEAANKGPVALIKNGDIIDIDIEARSVNVELTDEQLDERRRELEAGDGYVAHRDRHVSHALKAYAAFARSADKGATRDPELINKLSGLA
>NZ_CP023192.1|WP_003832943.1|1654173_1655187_+|methionyl-tRNA-formyltransferase
MLKLVFAGTPDVAVPSLQAFAADSRFEVVGVITRPDAPTGRGRKLTPSPVKAAAVELGLTVIDTKPRSPEFMEALKGLHADIAAVIAYGNILPKSVLDAVPMGWYNLHFSNLPKWRGAAPAQRAIWNGDPTTGADVFKVGEGLDDGPIIASLTIELTGRETSGELLARLAEEGAPMYVDALAAVGSGTAVFTPQPAEGLEYAHKITVEDARINWADPAEAIDRQIRACTPHPGAWTELFAEGLIADSGEANEESSNLATTAKSLTLHILAAQPADQMNPNTPIDLDPGELKVGKKNVWVGTGTGALELTQVKAQGKKAMRAADWARGARLSPAACVR
>NZ_CP023192.1|WP_003832945.1|1653329_1654034_+|HAD-family-phosphatase
MKGWPGEPDMDYDVLVADGEAAANAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDEFLDNDISGFYDVNDLMDGGTSTEEAIAIMRERKGDKWADILDYYIKNFRDSLTGIVPGARVLVDDLKAAGIGVWGLSNWEASLFHVAEEQCDILQKLDGKLVSGFVKLRKPHKEIYDAALKEFGIKADGALFIDDKAMNIVGSNAAGIRGVRFQDPVKLRELLIANGVNIPDVQ
>NZ_CP023192.1|WP_106622660.1|1650870_1653180_+|primosomal-protein-N'
MTTSDAQQLTLDGLAPRKRRKRAPAEHTPAEHDPIAQVVLDVQALHLGQTFDYFIDEKDSDAAQPGVLVRVRFGGQRVSGVIWSRTSTSDTPRSSIRYIERVLSPDVLVPASMREDIGLIANAYGGTRANILRFAVPPRVSKVETEQRLTASFQRPVGGSLPDNIQGGFAGRGTLPDGTRPSGSSFEVADSVSEGAAQGYRRIAANYGEANVLNDALHGQRFQSFVFDSLPGAQEWQRNMAWMAATSLSAGKSAVVELPTMREVEDLLPVLRNYGLKPFSPTPSGGWIGDVAVLNAQMPAADRYRAYLAVALGQVKVIIGTRAVMYAPVEGPALFAILEDAAYQNMDGMMPYPQARGVMRLRAKSHGGVFVAMSNARTVQSQWENTGPGTVETPVSGYSTAIHPLASPLKDATPWVRWLNRDELARLADATIGARVPHTAVRALSKALESGPVLLSIPQDSTSEALSCAKCHRQARCAKCSGPLQLPADRSESAPRCQWCGAAAIHWTCPGCGHERMRVVRVGAAGTAAELAGLFRSVPMVLSSKAQGLARDVPCKPMIVIATPGFEPRVRPVSNERGAAGHEYRAVAILDAWTSLYALGVDARLDTLTAWMRAVSLCAPRSRGGQALILGETDPAIAQSLMMWDSRILASKDLDERMETGMPPTVAAACVWGRRDAVMTLMQRIGALGGDWAVCGELPGMLGPVPIAQPDTVDARELEATADRVKAVVRVPQSQRAELAIRLHRETARHVASREPGELRFRIDPKDLI
>NZ_CP023192.1|WP_106620615.1|1650070_1650823_+|phosphoserine-phosphatase-SerB
MSQGFSRIESMTQEDVHFIDKSAESEVGALGGSADSVPTLAEPGLLVMDVDSTLIDEEVIDELGEAAGSGEEIAKVTERAMRGELEFCDALRARVALLEGLPVSVFDTVHDKLHFTKGALELIDTLHAHGWKVGVVSGGFHEVVDKLAAEGHIDYWIANRLEVADGRLTGKVLGEIVCKTVKLHALRKWAKQLDIPMSQTVAVGDGANDIPMIQAASLGIAFCAKPKTQLAADEAINDRDLMHVLDYLRR
>NZ_CP023192.1|WP_106621056.1|1649354_1650050_-|DedA-family-protein
MELATALAANPTPICTTSEGGLIGTITEWLITLMETIGGVGVALAIALESVFPPIPSEVILPLAGFTAARGTLSLPGAIIWATIGSLLGAWTLYGISRWVGLHRINRAADKIPGVSRKDVSKANDWFTRYGTWSVLIGRVIPVVRSLISIPAGFNRMNFLQFTGWTLLGSAVWNTILVSAGYLLGDQWCSIQGALGVFEDVVIVVVVVVIVWFAVKKVRTVVRNRKAQHNE
>NZ_CP023192.1|WP_106622382.1|1647726_1649301_-|proteasome-ATPase
MGEAENLAELNDRLMAKNHALAEALNRAGKELTKAKSQLAQLAQPPLTFATMVKIDSTHTDEDGVQHASAEVISGTRRMIVPVAANVNASRLAAGSTVMLNEKLVLVEQRDADTVGQIRVVKQILDDGRLIVADASGNPVLVRRSSALSLTAISQGDRIIVDPSVRLAIELLPNESDRDLVLEETPDVTFADIGGLDSEIGRIRDAVQLPFQHRALFERYDLKPPKGVLLYGPPGNGKTMIAKAVANALCEGGCDMDGDGSINGREQQVKGVFLSVKGPELLNKYVGESERLIRLIFQRARERAAEGKLVVVFIDEMDSLLRTRGSGVSSDVETTIVPQFLSELDGVESLDNVMVIGASNRVDMIDPAVLRPGRLDVKIRIDRPSGEAAASIVRHYLTDDLPLEQGLDADALSRVLVRDIYTRSERRHLADVRDERGTWNALFLADVVSGASLKNIVDRAKTHAVKASIASGKDVALDATLLGRAVEDEFAETRDSLLDADPVQWARVNGFDAGLVTAIRAVGR
>NZ_CP023192.1|WP_065458422.1|1646953_1647667_+|HAD-family-phosphatase
MKGWPGESELNIPFNEVIAYDAAAAHARQPIANVIFDFGNVLVDWDPQALFMPRYSEKRIEDFLDNDISGFYDACDRMDAGASPAEGIAWIRETHGERWAEMLAYYFDNFLDSLTGTIPGMRVLVHDIKTAGLGVWGLSNWQRETIGEAENAYEILRMLNGRVISSEVHMRKPDTAIYMKALESFGIDAETTVFVDDRASNVIGANRAGIRCIRFHDERGLRETLIDAGVPIPAVAE
>NZ_CP023192.1|WP_014483316.1|1662397_1663183_-|ATP-binding-protein
MGIHRPPVVMPDMKRRRASTGEKIETIMNLARRLPLTRQILADQLANATPTQMEFVEEWMNAELESRERSKRSRLLKQAGFPADKELDGYDWTPIRFPVDYGRQRIESLEFISGHEDLVLFGPPGTGKTHLAIALGRNACRRGMPVRYHTAASLVMRLLRAQTDNRLDRELAMIGRTPLLIIDELGYVPIDEEGSRLLFQVVTNAYETQSIIYTTNIEFSGWGRIFGDPNMAAAIIDRTVHHGRMIRFEGESWRKTHALMQ
>NZ_CP023192.1|WP_015438265.1|1663185_1664667_-|IS21-family-transposase
MTVPVSVQQRIRVLDAHGVSWRSIAKEVGVARDTVAKYAGREDCSPKPEHSASRPSKLDPFKATVDGWLEADRFMPRKQRHTAKRVYDRLVSERGYGGAYSSVQRYVKRWREEHRLPSDGYLELEWHPGEAQVDFGMARAVVGGDRVDVHCLVVTFPYSNMRYCAALPGENAECVCAGLRTVFEHIGAVPLTLVLDNATGAGHRVAWDRVSIVKVFELFVEHYRLETRFCNPNSGNEKGSVENAVGFLRRNIMVPLLNAESYAQLTRYMLERCDAMAKETHYRKGAPIGGLFAEEKAEMQPLPSKPYDAIRWEVRKADKDGRVQVDGNHYLAGPSWRGWTLDVALRAFDVTIRTQDGRTCARLPRVYGDSPATIRDPATLLPALGRKTNAWPDSTIRDDFPDKLRLAIDRMDAKARRNAFRLISRTSDACGFEPAVEAGEHLVEQGHPLDEASLTTMARRIASGEKPYEQTAPDLTGYDVFMQPRGTRERKEA
>NZ_CP023192.1|WP_025341852.1|1665472_1666234_+|ATP-binding-protein
MNQKNGRTGPGPLRERARSLFISQATIDETLEWATPRQLDAIDRMLATELANREASKRARLMRQARFPVTKSLDGYDFANVRLPDGYTKEQLTGLDFAAKAQDLVFYGKTGRGKTHLATALGMLAIEQGRSVRFRQTAELVLQLGKAKRDGALDSLLRDLARADLIILDEFGYVPFDIDGARLLYQIIAGSYERRSIIFTTNIEFSKWGTIFADDKLAAAIIDRIVHHGRLIEFTGPSRRVSQALMFGKTDNQ
>NZ_CP023192.1|WP_014484096.1|1672072_1672306_-|hypothetical-protein
MTMVESLPTYSSAEAEARSKGDNLISMINVYLAGYAAAGMPVDVETTGKTLHALPADTVLRTDADFDAFEHEVLGDD
>NZ_CP023192.1|WP_003833383.1|1672765_1673056_-|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVNTETPDGKRRLRSVAKTCMKYGQRVQNSVFECSVTPSDYLILKHDLAEIMDEMCDSLRYYNLGSKYASKIEHRGRQRHVPVDGVMML
>NZ_CP023192.1|WP_014484097.1|1673112_1674144_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVTSEDVYLSLKNDNVIVQQGDNTLGRIPLRSLESIISFSYKGASPALMGKCSELGVGLSFFSPRGWYYCSILGEKNRNVLLRREQFRFADDESEALPFARSFIIGKIYNCRWVLERTKRDHALRVNSERIAAQSEKLRQSLANVRNCTSIDELRGVEGLAAKDYFFTFDNLILRDKDDFFFQQRSRRPPLDRANALLSFVYSLLTSDCIAALQGVGLDPYVGFLHTDRPGRASLALDLVEEFRPAIADRFVLTLINTGVIKPSQFEVRENGGVFLSEGGRKTVLAAWQKRKQETITHPFFGEKIPWGLVPHVQALLLNRAIRGDLDAYPPFMWK
>NZ_CP023192.1|WP_014484098.1|1674145_1674835_-|CRISPR-associated-protein-Cas4
MKEPTDYPEDDWLALSGLQHFAFCRRQWALIHIEQQWQDNYLTTAGSLEHDRAHDYSESETRGNLLIMRDLRVFSRRLGITGACDVVEFRQSDEGVPLHGRAGTWLPYPVEYKHGVPKQVDADRLQLCAEAMCLEEMLACSIPEGSLFYQQTKRRERVQFDESLRGQIVAMTSEMHDLFSRGHTPKVRPSKACRACSLSDICLPKIAKTRSAHQFIEESVQAGVEGVAG
>NZ_CP023192.1|WP_014484099.1|1674873_1675725_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQHKIDFVLTFAVENANPNGDPLNGNRPRTTAEGLGEMSDVAEKRKIRNRLQDAGERIFVQSTDRTDDGEKSLSDRWKAFTKTLSKEDQKDREALSYRACEQWIDVRSFGQVFAFKGKEKEGDASVSIPVRGPFTIQSAFSLEPIAIDDVQITKSVNGETTDTNKKSSDTMGMKHRVSGRAVYVTHGSISPQLAEKTGFTEKDAEKIKEALLTLFENDESSARPAGSMEVVNLAWFTHNSKAGQYSSAKVHRTAKVDEEGVITVDTTHIPGLHYEVLEGR
>NZ_CP023192.1|WP_052787962.1|1675728_1677687_-|CRISPR-associated-protein-Cas8
MSLWSSLLQTYDAVNSSAGITPLNEDVNKTLLPLYHTTLKTQLQVTLDENGYPTIKRDNADIEIIAPCTEQSMGRSGTVLPPHPLFDQLQYIDTNYDPVKHESYLSQLASWKGDNAKLNAIYQYLSQHSIIEEARAQGIGIDPKKDSKIGVRFAVHVRHGDYEPNVWADHAIRDLWIAHEEQVRHGASLGTDLFGETLYKPSTNFPKKIVNVNGNAKLISANDNTNFTFRGRFANRDEALSIDTLTSQKIHTTLRWLAANNGTLTGSQDIVIWAIDGHPTDNVFDPTGNSRDVAEQVDDRTDSEKLIDANVQTYANYAKQFVKLLRGYGNEKVLQQMQQHSRRIVVTIFDAATSGRLSVTFYRELSQNEYIESVLQWHEDAAWYLTCFDNKNSASTDDEAPRGSKKSSDKLKPIPYIGAPSFADIINCVYSTDDHSSDSYRRFAKYVKKQLVECMFSNAGLPASLLQPAFHKVIRPLSYDSLSVWQHDFEVACSMWKKYYIDQDKRLPLNERNNITMDLDEKRTDRDYLFGQLLALADNYEYRVLLRQSGGRTPDRTTNAVKLMNNFVAKPSTTWLTLRQQLNPYIISSTNGMFFQNEVDEVMSKFKEGDFESNKPLSSLFLLGYSHKRRQLIQRADAAKQLKEQNIENKGE
>NZ_CP023192.1|WP_015439067.1|1677689_1678394_-|type-I-C-CRISPR-associated-protein-Cas5
MEKHRNSIEYVIYGDYALFSEVATRTGGEKNSYQIPTYQALKGITESIYWKPTIVWVIDAVRVMNKIQTEGKGIRPIKMSGGNDLSYYTYLKKVKYQVLAHFEWNEQREDLRVDRNENKHHNIAKRSVNLGGRRDIFLGTRECQGYVEPCEFGSGEGFYDGYGDWQFGFEFHSFIYPDENPEHDFIAQFWRPIMHDGIIQFERPDSTQLDQRIIRRNQHVKDFIEGRNFSMAEE

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Crispr_ID: NZ_CP023192_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023192_2

1668115-1671248

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRT

46 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP023192_2

>merge|NZ_CP023192|2|1668115-1671248|PILER-CR,CRISPRCasFinder,CRT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGACGACCTCGCGGACCTCATCCTCGACACCATCAGCAGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCAGCGTTCCTGGAAAGGCCGGAACTCCACTTCCAATTTCAATCCACGCTCCCCGGATGGGGAGCGACATGGTGACGCCGCGAACGTGACGGTCACGGACGTATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGGGCGCATCGGCACCTGGGTGTGGACGATCATATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGTGGCGGGAAACATCATCGGTCGTGGACAAATATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTCTTCCTGGTCTCCGGCTTCCACTCGCGTGAGGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGTGCGGCTCGCTCTGTGGGATCTCGCCTGTCGGGTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGACGTTCTTGCCCAGGCTGATCCTGCGATTGACCCTATTTCAATCCACGCTCCCCGGATGGGGAGCGACCCAGACACCACGACCCCGGCTGCGGTACACGATACGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGATCGCCGTGATCACGGAGGTCACCACGGTTAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCCCTGCCGGTCAGGTTGCCGCAATTATGATGCAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCGCCGTCCGCTCTCCCAAAGTCCGGGTTTTCGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGACGAATGGCGGAATCCACTGCCTACGCCTCAAAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTGTGGCGTGGTTCAACAACAAGGCCACGCATGAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAAATTTCAATCCACGCTCCCCGGATGGGGAGCGACAGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACGCCCGTTCCTCGCATCGGCCGCGAGCCCGCCCATATTTCAATCCACGCTCCCCGGATGGGGAGCGACGCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCGGGCTCCTGATCGTCATCATCTACTTCCAGATATTTCAATCCACGCTCCCCGGATGGGGAGCGACCATCCAGTCGAGCATGTGGCCGGTCTCGTGGAAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTGCCCGCGTCGCTGCCGATCATGCCGGCGTTGGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTCGAGGCCATGTGCCACCAGTTCGTCGAGTACGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACAGCGGCTACGGTGCGCGGCGGCAAGGGTCGTATATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCATGGAGGCCCCGCGCAACAGTGATAATTATGATATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTTAATGCTTTTAGAGGCTGTTCACGGCATTGTAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCATACACCGTCCTTGGCTGGGTTCGACTGCAAGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCACGGCTTACTGCCGTGGGGTATATTATTGTTTATATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGGGCATATCAATATCCGTCGTGCCCGAAGCGCTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCAATCGGCCTTGATAGCCGGCCTGTGTTACGAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTTTACGTTCCCCGGTTGCGATTTGTTTCACGTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCAATCGGCAGACCGTATCCTCGGTCGTTAATCTATTTCAATCCACGCTCCCCGGATGGGGAGCGACAAGTCAACCTCAGCCGCATTGTAACAGGAGGTGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGAAGCAAGACCGCGCCATGGGCCACCCGACTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTTTTAATGTGATTTAATGGGACTGTTGCTGAATTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGGAGGTTGCCACGCCCTGCTGTTCCATCTCGTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGATATGATGCAATGTATCATCCAGCCCAATGGAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCACAATGGAGTTTCGGACGCCGCTTGCAGGTCTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGAACATGCCCTTGATGGTCAAGCGATATTCTTCCGATTTCAATCCACGCTCCCCGGATGGGGAGCGACATGCTCGGTGTCCAGATGTTCCCCGGATACGATGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTCTCCATGCATTCCAGTGAGGCGGGCGGGGTGATATTTCAATCCACGCTCCCCGGATGGGGAGCGACCAGTGCGGGCGCACCCTTCCGTGCTTCGCTCTGGATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP023192|2|2|1668115-1671248|PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCAGCGTTCCTGGAAAGGCCGGAACTCCACTTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGGTGACGCCGCGAACGTGACGGTCACGGACGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGCGCATCGGCACCTGGGTGTGGACGATCAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCTTCCTGGTCTCCGGCTTCCACTCGCGTGAGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGCGGCTCGCTCTGTGGGATCTCGCCTGTCGGGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACGTTCTTGCCCAGGCTGATCCTGCGATTGACCCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAGACACCACGACCCCGGCTGCGGTACACGATACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGATCGCCGTGATCACGGAGGTCACCACGGTTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCCTGCCGGTCAGGTTGCCGCAATTATGATGCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGCCGTCCGCTCTCCCAAAGTCCGGGTTTTCGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGTGGCGTGGTTCAACAACAAGGCCACGCATGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCCCGTTCCTCGCATCGGCCGCGAGCCCGCCCAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGCTCCTGATCGTCATCATCTACTTCCAGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATCCAGTCGAGCATGTGGCCGGTCTCGTGGAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGCCCGCGTCGCTGCCGATCATGCCGGCGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCGAGGCCATGTGCCACCAGTTCGTCGAGTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGCGGCTACGGTGCGCGGCGGCAAGGGTCGTAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCATGGAGGCCCCGCGCAACAGTGATAATTATGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTAATGCTTTTAGAGGCTGTTCACGGCATTGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACGGCTTACTGCCGTGGGGTATATTATTGTTTAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGCATATCAATATCCGTCGTGCCCGAAGCGCTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCCTTGATAGCCGGCCTGTGTTACGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCAGACCGTATCCTCGGTCGTTAATCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCAACCTCAGCCGCATTGTAACAGGAGGTGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGAAGCAAGACCGCGCCATGGGCCACCCGACTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GATATGATGCAATGTATCATCCAGCCCAATGGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACAATGGAGTTTCGGACGCCGCTTGCAGGTCTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GAACATGCCCTTGATGGTCAAGCGATATTCTTCCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGCTCGGTGTCCAGATGTTCCCCGGATACGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCTCCATGCATTCCAGTGAGGCGGGCGGGGTGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGTGCGGGCGCACCCTTCCGTGCTTCGCTCTGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP023192|2|2|1668115-1671248|CRISPRCasFinder
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCAGCGTTCCTGGAAAGGCCGGAACTCCACTTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGGTGACGCCGCGAACGTGACGGTCACGGACGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGCGCATCGGCACCTGGGTGTGGACGATCAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCTTCCTGGTCTCCGGCTTCCACTCGCGTGAGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGCGGCTCGCTCTGTGGGATCTCGCCTGTCGGGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACGTTCTTGCCCAGGCTGATCCTGCGATTGACCCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAGACACCACGACCCCGGCTGCGGTACACGATACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGATCGCCGTGATCACGGAGGTCACCACGGTTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCCTGCCGGTCAGGTTGCCGCAATTATGATGCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGCCGTCCGCTCTCCCAAAGTCCGGGTTTTCGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGTGGCGTGGTTCAACAACAAGGCCACGCATGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCCCGTTCCTCGCATCGGCCGCGAGCCCGCCCAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGCTCCTGATCGTCATCATCTACTTCCAGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATCCAGTCGAGCATGTGGCCGGTCTCGTGGAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGCCCGCGTCGCTGCCGATCATGCCGGCGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCGAGGCCATGTGCCACCAGTTCGTCGAGTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGCGGCTACGGTGCGCGGCGGCAAGGGTCGTAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCATGGAGGCCCCGCGCAACAGTGATAATTATGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTAATGCTTTTAGAGGCTGTTCACGGCATTGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACGGCTTACTGCCGTGGGGTATATTATTGTTTAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGCATATCAATATCCGTCGTGCCCGAAGCGCTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCCTTGATAGCCGGCCTGTGTTACGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCAGACCGTATCCTCGGTCGTTAATCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCAACCTCAGCCGCATTGTAACAGGAGGTGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGAAGCAAGACCGCGCCATGGGCCACCCGACTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GATATGATGCAATGTATCATCCAGCCCAATGGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACAATGGAGTTTCGGACGCCGCTTGCAGGTCTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GAACATGCCCTTGATGGTCAAGCGATATTCTTCCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGCTCGGTGTCCAGATGTTCCCCGGATACGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCTCCATGCATTCCAGTGAGGCGGGCGGGGTGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGTGCGGGCGCACCCTTCCGTGCTTCGCTCTGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NZ_CP023192|2|2|1668115-1671248|CRT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCAGCGTTCCTGGAAAGGCCGGAACTCCACTTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGGTGACGCCGCGAACGTGACGGTCACGGACGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGCGCATCGGCACCTGGGTGTGGACGATCAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCTTCCTGGTCTCCGGCTTCCACTCGCGTGAGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGCGGCTCGCTCTGTGGGATCTCGCCTGTCGGGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACGTTCTTGCCCAGGCTGATCCTGCGATTGACCCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAGACACCACGACCCCGGCTGCGGTACACGATACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGATCGCCGTGATCACGGAGGTCACCACGGTTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCCTGCCGGTCAGGTTGCCGCAATTATGATGCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGCCGTCCGCTCTCCCAAAGTCCGGGTTTTCGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGTGGCGTGGTTCAACAACAAGGCCACGCATGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCCCGTTCCTCGCATCGGCCGCGAGCCCGCCCAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGGGCTCCTGATCGTCATCATCTACTTCCAGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATCCAGTCGAGCATGTGGCCGGTCTCGTGGAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGCCCGCGTCGCTGCCGATCATGCCGGCGTTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCGAGGCCATGTGCCACCAGTTCGTCGAGTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AGCGGCTACGGTGCGCGGCGGCAAGGGTCGTAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCATGGAGGCCCCGCGCAACAGTGATAATTATGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTAATGCTTTTAGAGGCTGTTCACGGCATTGTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACGGCTTACTGCCGTGGGGTATATTATTGTTTAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGCATATCAATATCCGTCGTGCCCGAAGCGCTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCCTTGATAGCCGGCCTGTGTTACGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCAGACCGTATCCTCGGTCGTTAATCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCAACCTCAGCCGCATTGTAACAGGAGGTGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGAAGCAAGACCGCGCCATGGGCCACCCGACTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GATATGATGCAATGTATCATCCAGCCCAATGGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACAATGGAGTTTCGGACGCCGCTTGCAGGTCTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GAACATGCCCTTGATGGTCAAGCGATATTCTTCCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	ATGCTCGGTGTCCAGATGTTCCCCGGATACGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCTCCATGCATTCCAGTGAGGCGGGCGGGGTGAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAGTGCGGGCGCACCCTTCCGTGCTTCGCTCTGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023192.1\|WP_015439067.1\|1677689_1678394_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP023192.1\|WP_015438265.1\|1663185_1664667_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP023192.1\|WP_014483316.1\|1662397_1663183_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP023192.1\|WP_052787962.1\|1675728_1677687_-\|CRISPR-associated-protein-Cas8	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP023192.1\|WP_131068280.1\|1681497_1682040_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379250
NZ_CP023192.1\|WP_003832943.1\|1654173_1655187_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP023192.1\|WP_014484098.1\|1674145_1674835_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP023192.1\|WP_014484097.1\|1673112_1674144_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP023192.1\|WP_014484096.1\|1672072_1672306_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023192.1\|WP_003830251.1\|1657511_1657796_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP023192.1\|WP_014484099.1\|1674873_1675725_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP023192.1\|WP_014484101.1\|1678400_1680839_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP023192.1\|WP_003832945.1\|1653329_1654034_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP023192.1\|WP_106622661.1\|1658081_1659302_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP023192.1\|WP_080988955.1\|1655482_1657345_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP023192.1\|WP_025341857.1\|1682457_1685766_-\|mupirocin-resistant-isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NZ_CP023192.1\|WP_106622660.1\|1650870_1653180_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_CP023192.1\|WP_025341852.1\|1665472_1666234_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP023192.1\|WP_003833383.1\|1672765_1673056_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP023192.1\|WP_106620615.1\|1650070_1650823_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803

Protein	Function_ID	Function_description	E-value
NZ_CP023192.1\|WP_015439067.1\|1677689_1678394_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.78462e-83
NZ_CP023192.1\|WP_015438265.1\|1663185_1664667_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.9484e-14
NZ_CP023192.1\|WP_014483316.1\|1662397_1663183_-\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	2.68478e-58
NZ_CP023192.1\|WP_052787962.1\|1675728_1677687_-\|CRISPR-associated-protein-Cas8	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	6.75798e-90
NZ_CP023192.1\|WP_131068280.1\|1681497_1682040_-\|hypothetical-protein	gnl\|CDD\|379250	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3.	8.25072e-05
NZ_CP023192.1\|WP_003832943.1\|1654173_1655187_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	3.09461e-130
NZ_CP023192.1\|WP_014484098.1\|1674145_1674835_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.07596e-31
NZ_CP023192.1\|WP_014484097.1\|1673112_1674144_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.77456e-177
NZ_CP023192.1\|WP_003830251.1\|1657511_1657796_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.88678e-17
NZ_CP023192.1\|WP_014484099.1\|1674873_1675725_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.89068e-107
NZ_CP023192.1\|WP_014484101.1\|1678400_1680839_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.5575e-49
NZ_CP023192.1\|WP_003832945.1\|1653329_1654034_+\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.32725e-46
NZ_CP023192.1\|WP_106622661.1\|1658081_1659302_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP023192.1\|WP_080988955.1\|1655482_1657345_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP023192.1\|WP_025341857.1\|1682457_1685766_-\|mupirocin-resistant-isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP023192.1\|WP_106622660.1\|1650870_1653180_+\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP023192.1\|WP_025341852.1\|1665472_1666234_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.5351e-54
NZ_CP023192.1\|WP_003833383.1\|1672765_1673056_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.39737e-29
NZ_CP023192.1\|WP_106620615.1\|1650070_1650823_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.69197e-100

>NZ_CP023192.1|WP_025341852.1|1665472_1666234_+|ATP-binding-protein
MNQKNGRTGPGPLRERARSLFISQATIDETLEWATPRQLDAIDRMLATELANREASKRARLMRQARFPVTKSLDGYDFANVRLPDGYTKEQLTGLDFAAKAQDLVFYGKTGRGKTHLATALGMLAIEQGRSVRFRQTAELVLQLGKAKRDGALDSLLRDLARADLIILDEFGYVPFDIDGARLLYQIIAGSYERRSIIFTTNIEFSKWGTIFADDKLAAAIIDRIVHHGRLIEFTGPSRRVSQALMFGKTDNQ
>NZ_CP023192.1|WP_015438265.1|1663185_1664667_-|IS21-family-transposase
MTVPVSVQQRIRVLDAHGVSWRSIAKEVGVARDTVAKYAGREDCSPKPEHSASRPSKLDPFKATVDGWLEADRFMPRKQRHTAKRVYDRLVSERGYGGAYSSVQRYVKRWREEHRLPSDGYLELEWHPGEAQVDFGMARAVVGGDRVDVHCLVVTFPYSNMRYCAALPGENAECVCAGLRTVFEHIGAVPLTLVLDNATGAGHRVAWDRVSIVKVFELFVEHYRLETRFCNPNSGNEKGSVENAVGFLRRNIMVPLLNAESYAQLTRYMLERCDAMAKETHYRKGAPIGGLFAEEKAEMQPLPSKPYDAIRWEVRKADKDGRVQVDGNHYLAGPSWRGWTLDVALRAFDVTIRTQDGRTCARLPRVYGDSPATIRDPATLLPALGRKTNAWPDSTIRDDFPDKLRLAIDRMDAKARRNAFRLISRTSDACGFEPAVEAGEHLVEQGHPLDEASLTTMARRIASGEKPYEQTAPDLTGYDVFMQPRGTRERKEA
>NZ_CP023192.1|WP_014483316.1|1662397_1663183_-|ATP-binding-protein
MGIHRPPVVMPDMKRRRASTGEKIETIMNLARRLPLTRQILADQLANATPTQMEFVEEWMNAELESRERSKRSRLLKQAGFPADKELDGYDWTPIRFPVDYGRQRIESLEFISGHEDLVLFGPPGTGKTHLAIALGRNACRRGMPVRYHTAASLVMRLLRAQTDNRLDRELAMIGRTPLLIIDELGYVPIDEEGSRLLFQVVTNAYETQSIIYTTNIEFSGWGRIFGDPNMAAAIIDRTVHHGRMIRFEGESWRKTHALMQ
>NZ_CP023192.1|WP_106622661.1|1658081_1659302_+|methionine-adenosyltransferase
MTEEHRLISAESVTEGHPDKVCDQISDAILDDLLAQDPSSHVAVETSAATGVFLVFGEVTSEGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGAQETAASREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGKVPHLRPDGKTQVTIEYDDNDQPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVLDEVLGSKVPHDNYRQLVNPTGSFVLGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLAHKVEIQIAYAIGVADPVSINVETFGTEQGVTRGQIAAAVRKVFDLRPAAIIDELDLKRPIYLKTAAYGHFGRTDVEFPWEKTDKVEELKAAIAGE
>NZ_CP023192.1|WP_003830251.1|1657511_1657796_+|DNA-directed-RNA-polymerase-subunit-omega
MAFGTDPTPDGLANPPIDDLMQHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREIDEGLLEETLGEDDTNEGN
>NZ_CP023192.1|WP_080988955.1|1655482_1657345_-|dihydroxy-acid-dehydratase
MTEMRSAKIMSGRVFAGARALYRAAGVSGDDMGKKPIIAIANSFDEFLPGHVHLNKVGRMVSEAIREAGGIPREFNTMAVDDGIAMGHTGMLYSLPSRDIIADTVEYQCNAHCADALICIPNCDKVVPGMLMAALRLNIPTVFVSGGPMEAGTTVLADGTVKSTDLIDVMYATADDSVSDEELLNYEKTVCPTCGSCAGMFTANSMNCLTEAIGLALPGNGTILASHSYRKDLFKRAAQQVVKIAHQYYDDSDDSVLPRSIATKEAFENAMTMDVAMGGSTNTVLHILAMAQSADVDFTLDDIERISHTVPCICKASPSGKWEISDVHRAGGITGILGELERAGKLHTNVHSIDYPTLEAKLADWDIMRPTCTEEAKQMYKAAPGHIISPEPWTHTTLFDSLDRDRVNGAIHDIDHPEIHEGGLAVLRGNLAPDGCVVKTAGVPPEIWKFRGPALVVDSQEQAIEVILNDTLKPGMALVIRYEGPKGGPGMQEMLYPTSFVKGKGIGKQVAMLTDGRYSGGSSGLAIGHMAPEAANKGPVALIKNGDIIDIDIEARSVNVELTDEQLDERRRELEAGDGYVAHRDRHVSHALKAYAAFARSADKGATRDPELINKLSGLA
>NZ_CP023192.1|WP_003832943.1|1654173_1655187_+|methionyl-tRNA-formyltransferase
MLKLVFAGTPDVAVPSLQAFAADSRFEVVGVITRPDAPTGRGRKLTPSPVKAAAVELGLTVIDTKPRSPEFMEALKGLHADIAAVIAYGNILPKSVLDAVPMGWYNLHFSNLPKWRGAAPAQRAIWNGDPTTGADVFKVGEGLDDGPIIASLTIELTGRETSGELLARLAEEGAPMYVDALAAVGSGTAVFTPQPAEGLEYAHKITVEDARINWADPAEAIDRQIRACTPHPGAWTELFAEGLIADSGEANEESSNLATTAKSLTLHILAAQPADQMNPNTPIDLDPGELKVGKKNVWVGTGTGALELTQVKAQGKKAMRAADWARGARLSPAACVR
>NZ_CP023192.1|WP_003832945.1|1653329_1654034_+|HAD-family-phosphatase
MKGWPGEPDMDYDVLVADGEAAANAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDEFLDNDISGFYDVNDLMDGGTSTEEAIAIMRERKGDKWADILDYYIKNFRDSLTGIVPGARVLVDDLKAAGIGVWGLSNWEASLFHVAEEQCDILQKLDGKLVSGFVKLRKPHKEIYDAALKEFGIKADGALFIDDKAMNIVGSNAAGIRGVRFQDPVKLRELLIANGVNIPDVQ
>NZ_CP023192.1|WP_106622660.1|1650870_1653180_+|primosomal-protein-N'
MTTSDAQQLTLDGLAPRKRRKRAPAEHTPAEHDPIAQVVLDVQALHLGQTFDYFIDEKDSDAAQPGVLVRVRFGGQRVSGVIWSRTSTSDTPRSSIRYIERVLSPDVLVPASMREDIGLIANAYGGTRANILRFAVPPRVSKVETEQRLTASFQRPVGGSLPDNIQGGFAGRGTLPDGTRPSGSSFEVADSVSEGAAQGYRRIAANYGEANVLNDALHGQRFQSFVFDSLPGAQEWQRNMAWMAATSLSAGKSAVVELPTMREVEDLLPVLRNYGLKPFSPTPSGGWIGDVAVLNAQMPAADRYRAYLAVALGQVKVIIGTRAVMYAPVEGPALFAILEDAAYQNMDGMMPYPQARGVMRLRAKSHGGVFVAMSNARTVQSQWENTGPGTVETPVSGYSTAIHPLASPLKDATPWVRWLNRDELARLADATIGARVPHTAVRALSKALESGPVLLSIPQDSTSEALSCAKCHRQARCAKCSGPLQLPADRSESAPRCQWCGAAAIHWTCPGCGHERMRVVRVGAAGTAAELAGLFRSVPMVLSSKAQGLARDVPCKPMIVIATPGFEPRVRPVSNERGAAGHEYRAVAILDAWTSLYALGVDARLDTLTAWMRAVSLCAPRSRGGQALILGETDPAIAQSLMMWDSRILASKDLDERMETGMPPTVAAACVWGRRDAVMTLMQRIGALGGDWAVCGELPGMLGPVPIAQPDTVDARELEATADRVKAVVRVPQSQRAELAIRLHRETARHVASREPGELRFRIDPKDLI
>NZ_CP023192.1|WP_106620615.1|1650070_1650823_+|phosphoserine-phosphatase-SerB
MSQGFSRIESMTQEDVHFIDKSAESEVGALGGSADSVPTLAEPGLLVMDVDSTLIDEEVIDELGEAAGSGEEIAKVTERAMRGELEFCDALRARVALLEGLPVSVFDTVHDKLHFTKGALELIDTLHAHGWKVGVVSGGFHEVVDKLAAEGHIDYWIANRLEVADGRLTGKVLGEIVCKTVKLHALRKWAKQLDIPMSQTVAVGDGANDIPMIQAASLGIAFCAKPKTQLAADEAINDRDLMHVLDYLRR
>NZ_CP023192.1|WP_014484096.1|1672072_1672306_-|hypothetical-protein
MTMVESLPTYSSAEAEARSKGDNLISMINVYLAGYAAAGMPVDVETTGKTLHALPADTVLRTDADFDAFEHEVLGDD
>NZ_CP023192.1|WP_003833383.1|1672765_1673056_-|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVNTETPDGKRRLRSVAKTCMKYGQRVQNSVFECSVTPSDYLILKHDLAEIMDEMCDSLRYYNLGSKYASKIEHRGRQRHVPVDGVMML
>NZ_CP023192.1|WP_014484097.1|1673112_1674144_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVTSEDVYLSLKNDNVIVQQGDNTLGRIPLRSLESIISFSYKGASPALMGKCSELGVGLSFFSPRGWYYCSILGEKNRNVLLRREQFRFADDESEALPFARSFIIGKIYNCRWVLERTKRDHALRVNSERIAAQSEKLRQSLANVRNCTSIDELRGVEGLAAKDYFFTFDNLILRDKDDFFFQQRSRRPPLDRANALLSFVYSLLTSDCIAALQGVGLDPYVGFLHTDRPGRASLALDLVEEFRPAIADRFVLTLINTGVIKPSQFEVRENGGVFLSEGGRKTVLAAWQKRKQETITHPFFGEKIPWGLVPHVQALLLNRAIRGDLDAYPPFMWK
>NZ_CP023192.1|WP_014484098.1|1674145_1674835_-|CRISPR-associated-protein-Cas4
MKEPTDYPEDDWLALSGLQHFAFCRRQWALIHIEQQWQDNYLTTAGSLEHDRAHDYSESETRGNLLIMRDLRVFSRRLGITGACDVVEFRQSDEGVPLHGRAGTWLPYPVEYKHGVPKQVDADRLQLCAEAMCLEEMLACSIPEGSLFYQQTKRRERVQFDESLRGQIVAMTSEMHDLFSRGHTPKVRPSKACRACSLSDICLPKIAKTRSAHQFIEESVQAGVEGVAG
>NZ_CP023192.1|WP_014484099.1|1674873_1675725_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQHKIDFVLTFAVENANPNGDPLNGNRPRTTAEGLGEMSDVAEKRKIRNRLQDAGERIFVQSTDRTDDGEKSLSDRWKAFTKTLSKEDQKDREALSYRACEQWIDVRSFGQVFAFKGKEKEGDASVSIPVRGPFTIQSAFSLEPIAIDDVQITKSVNGETTDTNKKSSDTMGMKHRVSGRAVYVTHGSISPQLAEKTGFTEKDAEKIKEALLTLFENDESSARPAGSMEVVNLAWFTHNSKAGQYSSAKVHRTAKVDEEGVITVDTTHIPGLHYEVLEGR
>NZ_CP023192.1|WP_052787962.1|1675728_1677687_-|CRISPR-associated-protein-Cas8
MSLWSSLLQTYDAVNSSAGITPLNEDVNKTLLPLYHTTLKTQLQVTLDENGYPTIKRDNADIEIIAPCTEQSMGRSGTVLPPHPLFDQLQYIDTNYDPVKHESYLSQLASWKGDNAKLNAIYQYLSQHSIIEEARAQGIGIDPKKDSKIGVRFAVHVRHGDYEPNVWADHAIRDLWIAHEEQVRHGASLGTDLFGETLYKPSTNFPKKIVNVNGNAKLISANDNTNFTFRGRFANRDEALSIDTLTSQKIHTTLRWLAANNGTLTGSQDIVIWAIDGHPTDNVFDPTGNSRDVAEQVDDRTDSEKLIDANVQTYANYAKQFVKLLRGYGNEKVLQQMQQHSRRIVVTIFDAATSGRLSVTFYRELSQNEYIESVLQWHEDAAWYLTCFDNKNSASTDDEAPRGSKKSSDKLKPIPYIGAPSFADIINCVYSTDDHSSDSYRRFAKYVKKQLVECMFSNAGLPASLLQPAFHKVIRPLSYDSLSVWQHDFEVACSMWKKYYIDQDKRLPLNERNNITMDLDEKRTDRDYLFGQLLALADNYEYRVLLRQSGGRTPDRTTNAVKLMNNFVAKPSTTWLTLRQQLNPYIISSTNGMFFQNEVDEVMSKFKEGDFESNKPLSSLFLLGYSHKRRQLIQRADAAKQLKEQNIENKGE
>NZ_CP023192.1|WP_015439067.1|1677689_1678394_-|type-I-C-CRISPR-associated-protein-Cas5
MEKHRNSIEYVIYGDYALFSEVATRTGGEKNSYQIPTYQALKGITESIYWKPTIVWVIDAVRVMNKIQTEGKGIRPIKMSGGNDLSYYTYLKKVKYQVLAHFEWNEQREDLRVDRNENKHHNIAKRSVNLGGRRDIFLGTRECQGYVEPCEFGSGEGFYDGYGDWQFGFEFHSFIYPDENPEHDFIAQFWRPIMHDGIIQFERPDSTQLDQRIIRRNQHVKDFIEGRNFSMAEE
>NZ_CP023192.1|WP_014484101.1|1678400_1680839_-|CRISPR-associated-helicase/endonuclease-Cas3
MGHALMPKDLLLARKDDDGNTQTLYDHLHNTAKLAAGFEKRSSVTAFAAGLLHDSGKATDDFKRYLLTGNRKRGEVVHAKQGAFIVDDCAADFPSSAASMITAEVLELAIANHHGHLPDCLDACGGTAYFRKLTGENKKAEQYHYQEVLSHVSSLNLDINTNFANSVAETNRLLETVDSCGISPRNTRNSRSFFLGLYAKYIYSRLVDADRVDAANFTAHQPYTSQTPNWEELTRRLENAISGFDTSSKISKIRMRISEDCLAASTRDTGIYRLGVPTGGGKTLASLRFALHHAQETGKHHIIYITPYLSITEQTVQVFRNVLDLDKDDEILLEHYSSVVPDKDDEKEQQRRLAAERWDKPIIVTTMVQFLETVMSAKATKLRKFHNLADSVIVFDEVQALPTNTINVFNEVVSFLSKILGSTILLCSATQPLLEQTDRRNLLLSDKPDLIDPDNDYAEQLRRTNIVASSQGLTLDDFAAEIYSKALDNGNCLAVVNLKGEAKQLYQLVKELDVDHRFTLVHLSTAMCGAHRKNQLAVLKKCLPKKTGDSGQPVICISTQLIEAGVDISFSCVIRAMAGLDSILQAAGRCNRNGESQMPRNVYVYPIKDESGLRYLPEIQLGKEITDQLIHDYPEQDLLSAFMIEEYYRAYLIRYPKLVDSKSRNIGTMDYSILGGEETVYDLLSFNRRRRGLYCNRVGEQYPYAFAQAFQTVGDSFHVIPGGTTDVVVHYGQAMELIDQLSGEGDFASKIKILRSLQEYTVSLFDYEFKALDKSKSIGEANGDFGILVLNEENYSQDFGFLLKAEMPLLMK
>NZ_CP023192.1|WP_131068280.1|1681497_1682040_-|hypothetical-protein
MRQMWGAWPAVRPAGRAPLAASRHRLRQAPAGARAPEGRLRGARGDRRDGAVARRKSAYTRDFERQVAWLSVHAPRSAVSALMRVDWKSVGPICRRVPLGHRGVLEARREDRPPPLRHPAHHPVRTIQRSPGGRQQQDQDHHQDRLRLQEPRQPHRPGHAQMRRPQPPTPRTPITRKPDQ
>NZ_CP023192.1|WP_025341857.1|1682457_1685766_-|mupirocin-resistant-isoleucine--tRNA-ligase
MSENVYPKANEGGETAHVAPNPSFPQMEETVLNYWDKDDTFQKSVERNPSGDHSQNEFVFFDGPPFANGLPHYGHLLTGYAKDVIPRYQTMKGRKVNRVFGWDTHGLPAELEAQKELGIDSVDQIEKMGIDKFNDACRASVLKYTHEWQDYVHRQARWVDFEHGYKTLNIPYMESVMWAFKQLYDKGLAYQGYRVLPYCPKDQTPLSAHELRMDADVYQDRQDTTVSVAVKMRDEEDAYAVFWTTTPWTVPTNFAIVVGADIDYVEVRPTEGKFAGKKFYFGKPLLEHYTKELGENYEVVRELKGSELAGRRYYPVFPYFAGEKAETEGNVPGPNGYTIFTADYVDTVEGTGLVHQAPYGEDDMNTLNAHGVKSTDVLDAGCRFTSQCPEYEGMYVFDANLPILRNLRAGDGPLAEIPEDQRAILFQEKSYVHSYPHCWRCATPLIYKPVSSWFVSVTKIKPRLLELNQQINWIPENVKGGQFGKWLANARDWSISRNRFWGSPIPVWVSDDPKYPRVDVYGSLEELKADFGDYPRDKDGNVNMHRPWIDNLTRVNPDDPTGKSHMHRISDVLDCWFESGSMSFAQFHYPFENKEKFEQHFPADYIVEYIGQTRGWFYLLHVMATALFDRPAFKNVICHGIVLGSDGQKMSKHLRNYPDVNGVFDKYGSDAMRWFLMSSPILRGGNLIVTAEGIRDTVRQVMLPVWSSYYFFTLYANAANGGAGFDARQLRADEVAGLPQMDRYLLARTRRLVERVEKSLNEFAISDACDAVSDFIDVLTNWYIRNTRDRFWNEDATAFNTLYTVLEAFMRVLAPLAPMEAESVWRGLTGGESVHLADWPYVVDEKTGADTELGRVLVDDPVLVAAMEKVREVVSGTLSLRKSAKIRVRQPLAKLTVVAEDVDAVKAYDELLKSELNVKDIEFCTMEDAGSQGLKIVHELRVNARAAGPRLGKQVQFAIKASKSGDWSVNASGAPVVSTPSGDLELVEGEYELINRVEEENAAEAAASVSAALPTGGFVILDTALDDDLLAEGYARDAIRAVQDARKAADLDIADRISLVLTVPAADVAKVEQFKDLIAHETLATSFEVKEGAELAVEVAKA

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Crispr_ID: NZ_CP023192_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023192_3

2015989-2016135

Orphan

Consensus_repeat	Method
AATCTCCTAAAATCCTGTCACTAAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP023192_3

>merge|NZ_CP023192|3|2015989-2016135|CRISPRCasFinder
TTCGTCCTAAAATTCTGTCACTGAGTCAAAGCCAATGACAGATATTTAGGAAACCAACCCCAATCTCCTAAAATCCTGTCACTAAGACTCACTTAGCGACAGAAATTTAGGACGACTGGGATAATCTCCTAAAATCCTGTCGCTAAG

>NZ_CP023192|3|3|2015989-2016135|CRISPRCasFinder
TTCGTCCTAAAATTCTGTCACTGAG	TCAAAGCCAATGACAGATATTTAGGAAACCAACCCC
AATCTCCTAAAATCCTGTCACTAAG	ACTCACTTAGCGACAGAAATTTAGGACGACTGGGAT
AATCTCCTAAAATCCTGTCGCTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023192.1\|WP_050825168.1\|2020322_2021585_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213024
NZ_CP023192.1\|WP_106622742.1\|2025447_2028510_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|273254
NZ_CP023192.1\|WP_019727371.1\|2005445_2007068_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP023192.1\|WP_025263279.1\|2013363_2014221_+\|polyketide-synthase-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP023192.1\|WP_003831622.1\|2018418_2018646_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NZ_CP023192.1\|WP_106622699.1\|1995893_2005406_-\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|227315
NZ_CP023192.1\|WP_052790426.1\|2022920_2024612_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237045
NZ_CP023192.1\|WP_003829786.1\|2014493_2015186_-\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP023192.1\|WP_019727373.1\|2011185_2013285_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023192.1\|WP_003829785.1\|2015201_2015633_-\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP023192.1\|WP_003831625.1\|2016249_2017203_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023192.1\|WP_003829790.1\|2009453_2010053_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|376871
NZ_CP023192.1\|WP_021648773.1\|1994312_1994537_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341042
NZ_CP023192.1\|WP_025263277.1\|2007060_2008941_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP023192.1\|WP_025263280.1\|2017558_2018386_-\|transcription-termination/antitermination-factor-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP023192.1\|WP_003829776.1\|2024678_2024930_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP023192.1\|WP_014484324.1\|2024952_2025261_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP023192.1\|WP_106622436.1\|2010054_2011014_-\|biotin--acetyl-CoA-carboxylase-ligase	unknown	unknown	gnl\|CDD\|223417
NZ_CP023192.1\|WP_025300059.1\|2018975_2020181_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP023192.1\|WP_015439254.1\|2021680_2022814_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460

Protein	Function_ID	Function_description	E-value
NZ_CP023192.1\|WP_050825168.1\|2020322_2021585_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213024	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins. This family contains an uncharacterized protein yadE from Escherichia coli and its bacterial homologs. Although its molecular function remains unknown, yadE shows high sequence similarity with the catalytic NodB homology domain of outer membrane lipoprotein PgaB and the surface-attached protein intercellular adhesion protein IcaB. Both PgaB and IcaB are essential in bacterial biofilm formation.	8.38399e-62
NZ_CP023192.1\|WP_106622742.1\|2025447_2028510_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	2.21534e-152
NZ_CP023192.1\|WP_019727371.1\|2005445_2007068_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP023192.1\|WP_025263279.1\|2013363_2014221_+\|polyketide-synthase-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	8.39972e-17
NZ_CP023192.1\|WP_106622699.1\|1995893_2005406_-\|type-I-polyketide-synthase	gnl\|CDD\|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0
NZ_CP023192.1\|WP_003831622.1\|2018418_2018646_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	4.48776e-12
NZ_CP023192.1\|WP_052790426.1\|2022920_2024612_-\|GTPase-ObgE	gnl\|CDD\|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
NZ_CP023192.1\|WP_003829786.1\|2014493_2015186_-\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.72993e-143
NZ_CP023192.1\|WP_003829785.1\|2015201_2015633_-\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	8.69761e-91
NZ_CP023192.1\|WP_003829790.1\|2009453_2010053_+\|biotin-transporter-BioY	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	6.07077e-28
NZ_CP023192.1\|WP_021648773.1\|1994312_1994537_-\|hypothetical-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.00218998
NZ_CP023192.1\|WP_025263277.1\|2007060_2008941_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP023192.1\|WP_025263280.1\|2017558_2018386_-\|transcription-termination/antitermination-factor-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.35103e-66
NZ_CP023192.1\|WP_003829776.1\|2024678_2024930_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	5.68869e-49
NZ_CP023192.1\|WP_014484324.1\|2024952_2025261_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	4.17736e-35
NZ_CP023192.1\|WP_106622436.1\|2010054_2011014_-\|biotin--acetyl-CoA-carboxylase-ligase	gnl\|CDD\|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	2.57451e-30
NZ_CP023192.1\|WP_025300059.1\|2018975_2020181_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP023192.1\|WP_015439254.1\|2021680_2022814_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	1.3328e-175

>NZ_CP023192.1|WP_003829785.1|2015201_2015633_-|50S-ribosomal-protein-L11
MAPKKKVSALIKLQIQAGKANPAPPLGPALGSHGVNIMDFCKAYNAQTQDKMGQVIPVEITVYEDRSFTFVLKTPPAAALLKKAAGIEKGTENPLTHKVGSVTKAQVREIAETKMEDLSARDIEAGMKIIEGTARSMGITVTD
>NZ_CP023192.1|WP_003829786.1|2014493_2015186_-|50S-ribosomal-protein-L1
MVKRSKKYREAAERVDRNNLYTANEAIALLKSMPSYNFDQTVEAVFRLSVDPRKADQLVRGTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGVPVDPNTLA
>NZ_CP023192.1|WP_025263279.1|2013363_2014221_+|polyketide-synthase-regulator
MSDFLELLAADAANSSDFTDRSGISATDRARTVLFECLFNHLADDRVASLFTILGFEHDFTCYAIAGYPARSAARSRVDIEKIVADFGGTCLTAERPITGLTGADNGTGRTAVVALIRPVGAATPEIICNTIAPAFDADRPIALGPQRTGAEGAMRSVQATLYCLKAAPALAATAQSLPRPLRTDDALPERALTGDEDARDELIRVVYGSLTAAGPDDPTLLTVSTFLKYGGSLETCAKELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRMATAQ
>NZ_CP023192.1|WP_019727373.1|2011185_2013285_+|hypothetical-protein
MTSPASSLPAAAAHPRLARVGAAARWMLAVLACLWLALCTAVGPLYWDFENGTIANWNWTNTAFFVLSFAIYLGLIVIMVRFAAGQRVLPRAISGRLSRAGQQHSNQALEPSQSQSVVADSNVSKRHATAASRFATLGRWITRGTNRFWKLALVFFIGWLWVPTTLLAAFGADIRSQIREFSWAWNQWTGLQQPYIGFFSFVPMDIYPTAHYMWPPDSTYLTDQHNVVLTVFYGAVAAFSRYLTGSNDAGIVALAAGQMLLAVFCCAATANRFLNRPWMGVAQSTKDKNGSSTGNVSSTTSARIAQDAAPQLAGGRARFLILAFFLCCPLAVFATISITKSPLFAFSFVWWFGIWYELTQTWKPEGKRKGLTATAPIRLPRHSFVAFVLSTAVMLISAKYAWYIIALQIVLALIADRRRWTTYVVALLIPTMLIHGGISLAISSGAIIGGDPIESRGVQLQMIARVASRNPEGISEEAKKNLSDVFNLDQMADAYSQQDADPVKSSGIQAKKVSYKWRTVTPEDMTNFNKAWFEIVKDNPVIALDALLAKCFGYFNVTDQPYVSMDYYVTSDYVQKNSTWIKSYNHNWRERITGFIRSWGKIPVIGWITHGNFYVVMTLLIGAAEVIRRRWLTLMTHIPLLLLMGVMITAPANNFERHMLPVAFVFGFVVLTYWRESLVERRIARQAQSSASTTMTLPQ
>NZ_CP023192.1|WP_106622436.1|2010054_2011014_-|biotin--acetyl-CoA-carboxylase-ligase
MGGFVRFFARHRESGRANRGNVVPMMIALQAATPQLPRTKAVADQVVAVGETDSTNALAARMIGDGSLTLPERKGGTLAVGVVATDWQSAGRGRNGHTWISQPGRCSTMSYAVRIPRAIATDESVNGWLQMIAGLVTLDALNGMIKEYGAAPNKQDCFLELKWPNDVFCHGLKLGGLLSELVLLPDGEADDDVVVVFGVGLNLALGASRLPTPQSTSLQLHVSGLPSFNEMRDAVAEREVEGFRERLAAFIADPHGQAEALREEMKAVCWARGRQVEAHFTDGTTLIGEAIGLNEDASLILRTEDGTDHTVRTADVGVL
>NZ_CP023192.1|WP_003829790.1|2009453_2010053_+|biotin-transporter-BioY
MQTSHTTSSTAATASLGRRIVAASWKPALFAVLMWLSAAAGAIPIPGTPVPITLQTFVVMLAGLMLPWRQAGSAVAAYLAAGAVGLPVFAGGASTMALVGPSAGFLFGFLPGVIVIALLRGKANTSSASAAALTAGRYLLTALVGGVVVVYALGFVIQSALTGVPIAAVALASMGFVAGDAIKAVVASLAAAGLSKLGR
>NZ_CP023192.1|WP_025263277.1|2007060_2008941_-|ATP-grasp-domain-containing-protein
MAHIVKKLLIANRGEIALRVVRTAKEMGISTVAVYSEQDRNSRYVDMADEAYLLSGDTYKDTYLNEDLLIDILHKTGADAVHPGYGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPFLPEEIVSTLEEYSRRLFTTVGYVGLGTCEFMVTPNGKVYFLEVNPRLQVEHTVSEEVSGLDLVREQLNIAAGGELTRAPEPRGHSFELRITSEDPATNLTPGSGTLEKIQWPAGPGVRIDTGVEQGDTISPKFDSMMGKVIVTAQNRLDAVARVRRVLDELVIEGVPTPIPLFKEIFRNDDFTAENGHPFSVSTKWLERTYLNRTPASASSGQPASLAGAAAPAAPDKSTSETFVIEMNNRRVKLTVPLDIVENITGSARARGAKRPTQPLRGAGLHNVASGAAKANDGAKSGVIASPMQAVVTRINVSEGQQVAKGDLLVVLESMKMENYVYAPAAGEVKKIFVGPADGVEAGDTLVTLDVNAGKAKAEDSKKEGGND
>NZ_CP023192.1|WP_019727371.1|2005445_2007068_-|acyl-CoA-carboxylase-subunit-beta
MTDIMDSPAVKAVTAASATNASQPPAHQPLRAAVVKAAELARAAEERARDKQHAKGKKTARERLDLLFDTGTFEEIGRFQGGNIAGGNAGAAVITGFGQVYGRKVAVYAQDFSVKGGTLGTAEGEKICRLMDMAIDLKVPIVAIVDSGGARIQEGVAALTQYGRIFRKTCEASGFVPQLSLILGPCAGGAVYCPALTDLIIMTRENSNMFVTGPDVVKASTGETISMADLGGGEVHNRVSGVAHYLGEDESDAIDYARTVLAYLPSNSESKPPVYAYAATRAERETAKRLATIVPANERQPYDMLEVIRCIVDYGEFVQVQELFGASALVGFACIDGKPVGIVANQPNVLAGILDVDSSEKVARFVRLCDAFNLPVVTLVDVPGYKPGSDQEHAGIIRRGAKVIYAYANAQVPMVTVVLRKAFGGAYIVMGSKAIGADLNFAWPSSQIAVLGAAGAVNIIHRHDLAKAKASGQDVDALRAKYIKEYETSTVNANLSLEIGQIDGMIDPEQTREVIVESLATLATKRRIKRTTKHHGNQPL
>NZ_CP023192.1|WP_106622699.1|1995893_2005406_-|type-I-polyketide-synthase
MSTFFLNRLTTEPHALAFAGQSTPWPVALADQTTDPSLDEALRGHVAAANRLLTPAAADLLATTGRPVDLFGFTPNPARLSAAADATASVEGVALTQLGALLDLEHLGYSVAQAKPVAVLGHSQGVLAVHMTRAIEAAGSIEAAGKTLDEILAVAALIGAAGTRRVRELGLNPKYGEASPMLSVKGATREQVEALVKRVNNARGPISIAVTNSDNHHVLSGYPEDLAAFAFETEREHQHQAKLREQKLHGGTVFNPTLEYLEVTLPFHSPLMAEAVEQTVSWAGACGFDQDRTRALAEEVLLNHVDWNARVKALFNAADPAKLWIVDLGPGNTLGKLIGNVVQGTGIGVVEATTLSERSALSTLESEPERTQNWKALAPRVIETPAGAKLVTKFSKLTGKPPVLLPGMTPTTVEPEIVAAAANAGYWAELAGGGQVTAEVFDRHIAALEDELEEGRTVEFNAMFMDRYLWNLQFGSSRIVPKKRASGAPIDGVVVSAGIPELDEAVELIKNLQADGLPYVSFKPGTVDQIRQVVRIAKAVAPTTIMIQVEGGEAGGHHSWEALDDLLAATYAEVRACDNLVLVAGGGIGTPERAADYISGQWAHAYGLPDMPVDGVLIGTAAMTAKEAHTSPEVKQMLVKTPGIPADAKSDDVFAPQAAHWVPSGKSVGGMSSGLSHLHADIYELENDSAECGRLLVRVMKHPEELDSRRKEIIEALNKTAKPYFGDLASMTYLEWAQRFAELAFPWADPTYADRFQHLLQRIEARVSDTDSGEFTSKLFAADGVSADEAAAAGLLTRDGILADPAPALEKLALSYPQTAELKVVPADVAWFPVLVREYPKPMPFVPVIDNDLLRWWGQDQLWQSEDQRYSADSVRAIPGPISVAGITTVDEPIADILGRFENAAIERVKAEQNASESNDFAALGEAVSAEDFIRKSPNISWVGHIADNPAYGTALGDQYYEIRAFDAAAGKYDLDIHLDTYWDNDPDGGTSKHAVRDIVIPLIVEGTELGRVPVVDRERLIPDVYAMLAATAGIGNTAITGDKLTAMPTLSVPFDEGAVTANAVTEGETAQNRPFGTATATYTLSANLGFDHEAATGAALPATLQPSRIAPDALVGPAWPAIYTALGSVYVKGYPVIEGLLNAVHLDHLIELEVNEEDLLKHTGETITLKSWAEDYFESASGRVVTIHVTHTAADGTLLARETERFAIRGRVYSDALPADAPEFGDAEHKEIAPTPRRLLRRVKVVAPHDMTAFARTSGDFNPIHTSTRGARISGLPAPLVHGMWLSATAQHAVQALDEKGAHYEIAGWTYNMYGMVQLDDTVEISVERVGKVRHGGMTLEVTCRIDGQLVSRGTALVRAPRAAFVYPGQGIQKQGMVLDERAKSAAARDVWERADKLTRAKLGFSILGLVRDNPKELTANGVTYRHPEGLLNLTQFTQVALATVAFAQTARLREAGADIWPAYFAGHSLGEYNALSAFADVIPLETVLELVFHRGSTMHHLIERDAQGRSNYRMGALRPNQFGVDDAHVKEYVESVAKASGEFLEIVNYNLAGQQYAIAGTIAGLKALKADSARRVAAFGGKPAFMLVPGIDVPFHSTLLRKGVPEFRDKLDALLPAYIDYRGRLVDRYIPNLVASPFEMTKEFAAKILEVVPSERIKAALDDPAVWDSYAADDQKLGRLLLTELLSWQFASPVRWIETQALLFGKREQGGLGVEEYVEVGLGNAPTLANLGAKTLRLPEFAGNDTVVYNVGRDEGRVYMTDTDSLVSDDEPEETAAPVETAPAGGSAVAKLGSSAAADAAPAAVAAPAPAAPVSAAPAGAPSGAAAPAGAPSGAAVADLPFKASDGIGVLMAYAAKVRLDQIGSNDTTDTLTNGVSSRRNQLLMDISSELGVASVDGAAEATLDKLAQIVNKAAPNYKPFGAVLSEALRDRLRSLFGAAGVKQQYIRDRVANVWQLGEGWVASVLAALLLDTREGSSSRGGDLAKLPTAAVQNKPEADKLIDAAVEVVAQLKGVAVALPSAGGAAGGAVVDSAALDAFAEKVTGSNGVLAATARFVLNELGVAAPAPEESEDENAAVVAAVEAELGSDWPKQVAPRFDANKAILFDDRWASAREDLARAYYDNDPAALNGSFIGLGKTIAAEAQWFADKSNNDELKAAFQKAASEALESVTSDKNASRYANDIAIVTGVSPNSIAAQVVEGLLAGGATVVATSHSFKPSIKAWAKQAYREHATGNAKLWLVPANLSSYRDVDALVDWVGHEQKKTSGATTTILKPAWEPTLFFPFAAPPVHGTLADSGDLFESQARLMLWGVERAIAGFSHIGADTNVQHKLHVVLPGSPNRGVFGGDGAYGEVKSAFDAIVNRARAEKVWSSRVTFAHPKIGWVRGTGLMGGNDPLVAVVERHGIHTYSTAQIAAKLLDLCTAESREQALKAPLDVDLTGGLGSEPIDIKALRAEAMSDAEKEASSEKAAIEGEKPEGGAAGSTLKALPTPIVTKQASVDLADWQNVTARPEDEIVIVSVGELGPWGSGRTRTQAELGIHPDGTVDLSAGAVLELAWNMGLLTWADSPKPGWYDTDGNLVPEEDIAERYHDEVVARSGIRPFEEGMGDDYKDGADEEEAEVFLDHDVTFSVPTREVAAEYVKLDEAHTTIAPDEESGEWNVTRHAGSMIRVPRRATMTRTVGGQFPKGFDPTRWGIPASMVGDVDKIALWNIVTTVDAYLGAGFTPAEILESIHPSLVASTQGTGFGGMMSMRKLYLDRFLNHEIPTDILQEALPNVVAAHVMQSYIGGYGNMIQPVSACATAAVSLEEGVDKIALGKADFVVTGAIDDIGVESVIGFGNMNATANSEEMYGKGIDARFFSRANDRRRGGFLESQGGGTILVTRGDIAEKLGLPVAAVVGFIHSYADGAHTSIPAPGLGALAAGMGGKDSKLVRDLAKLGVSADDIAVVSKHDTSTNANDPNESELHNTLAHAIGRTDGNPLFVISQKTLTGHAKGGACIFQVNGLTQLFKSGVIPANASLDCVDPKLQRDDHMVWIRKPLRIGGGEDEFGRETAGRPVKAGLATSLGFGHVSGFVALVHPGAFEAAVAKADGEAALEAWRERANARLAAGQRHLEEGMMGRAALYEPIDNRRFHEDHRGYDHHEVEKAMLLNPDARLGADGYYEA
>NZ_CP023192.1|WP_021648773.1|1994312_1994537_-|hypothetical-protein
MANVAFGHLFACSGIANSTYYAGIDLGMSLGPIVGGLLYGNAPIQWFYLLSMLTMPAAWLLYAATANYVHGRTR
>NZ_CP023192.1|WP_003831625.1|2016249_2017203_+|hypothetical-protein
MKTHKEVAALLQTAQREQRCAIGDGGKLYTALRRRTKIGEVVSPYPNLFAATSYWKSLNVEQQSMHLIRALAKVHPTWTFAGLSAACVYQYEHSYSLHNGTVDIVSPKGANCGGASGLNRIYMARCSQYRCQGILVTSPARTLIDCASLPFDKALAIYDSALRLQHVTKLDVETLIVQTDCNETNVKRLLRYANPLRENGGESWTYARIRQLGFAEPLFQTEFDNPANPEMPYRVDFCWKLHDGRIIVVEYDGIAKYRDTSNPNRANLMAKFEYERQRDTNLKTQGVTSIKHLFYEDVSDLKRLNALLTAIGIPKIR
>NZ_CP023192.1|WP_025263280.1|2017558_2018386_-|transcription-termination/antitermination-factor-NusG
MSDELNLENLDAALENVDAAADEAPVADALAEAVESAEPVAEAPVASPETVAESAEEESEVNESEQAEETDAGQKAVDEFSKSLRTLDGKWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPGYVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDKPAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFHQVQKLD
>NZ_CP023192.1|WP_003831622.1|2018418_2018646_-|preprotein-translocase-subunit-SecE
MAKTSTNEKAVKPNVFMRIGLFIKQIIDELRKVVTPTAKELFFWSLAVFIFVLLLMALVTGMDFGLGKATLGIFG
>NZ_CP023192.1|WP_025300059.1|2018975_2020181_-|pyridoxal-phosphate-dependent-aminotransferase
MAQWQILSDRINTVAPSATLAVDSKAKAMKAAGLDVIGFGAGEPNFPTPANVVKAAADACLDPKNYKYTPTPGLPELREAIAAKVLRDSGYEVNADQVVVTNGGKQAVYEAFQILLNDGDEVIIPTPYWTSYPEAVKLADGVPVEVFAGADVNFEPSLEALEAARTERTKAIIVNSPNNPTGAVWKPETVEAIGRWAVEHHIWIISDEIYEHLNYDDARTTYIGAAVPECRDQLLVLNGVAKTYAMPGWRVGWMVAPAEVAKAATKLQGHMTSNVANISQRAALAAVSGPLDEVYEMRKAFDVRRRAIVAALNDIEGVYCPTPTGAFYAFADITALLGKPLGSNGTVCATSADFAAALLDEAHVAAVPGEAFGAPGYLRFSYALADDDLAEGMKRFKDWAK
>NZ_CP023192.1|WP_050825168.1|2020322_2021585_+|polysaccharide-deacetylase-family-protein
MAKHHESHDSRGTRRSTVEPRVAYSRNVETHSAHDRQLHYGQHASHRSATAIAAQRTRRIAVLVVAAVVAVALAITVGVVTHGWFARQSAPSTQQQLPTTAHKSLTRKTVPQLDPGNIVIGVNGSETTYVLKGEQYVEGGAHAIEPEDGVLTGNIVTTGTVDTNTPGDYTVQYTVHDSTGHEASATRTVKVVDTMDKQTGGIPVLMYHYVYDPANPPADVDANWIPTTSLEPQLQYLTQNNFYYPSWPEVRAFIDGKHSLPKNSIVMTFDDGEPHFFQYGTPLLAKYKVPATSFIIGADGEALNKMKTYATPYLEYESHSFDMHRAGGTVGHGGRISAMSHQEIVDDLKQSEQVTGSLQAFAYPFGDTTPDAIEAVRETGTLAAFTTQYGWADVGADPMNLPRVRIQGTGSLDTFIAAIQ
>NZ_CP023192.1|WP_015439254.1|2021680_2022814_-|glutamate-5-kinase
MSTPSQAEVRRMIAAAGTIVVKVGSSSLTQPSGHLDPDKLDALTAALAQVRLMGARVVLVSSGAIAAGFGPLGFDERPADVATQQATAAVGQGLLMARYEAAFGRFGIRVGQILITAEDTIRATQYRNVERTLDRLLDLGVVPIINENDSLASNEIRFGDNDRLSALVANLVRAEALVLLTDVDALYTAPPAQPGSRRVEYVPNVIDALGDIQVSGSGSKVGTGGMVTKLEAARVAAVSGIPTVLTCASNAGPAMMGDPVGTVFAPVKARGSSRRLWIGFAAEPRGTIVVDAGAAKAIRGGRASLLAAGALDVHGDFSAGDPVWIDDESGTHLARGLAGFDSEEIPQTLGRNTAQLKRFLGDQYAHPLVHRDNLVLV
>NZ_CP023192.1|WP_052790426.1|2022920_2024612_-|GTPase-ObgE
MSDFVDRVTVHVRGGDGGNGSAGIRREKYKPLAGPNGGNGGDGGSVVFVADRNATSLLDYRFMPHRTAGNGTMGLGDNKDGSKGEDLILPVPCGTVVFEARGEQGKTKHPGEQLADLRHEGDRVVVAQGGAGGLGNIALANKTRRAPGFALLGELGEERDVILELKSIADVALVGFPSAGKSSLIAAMSAAKPKIADYPFTTLVPNLGVVIAGDSRYTIADVPGLIPGASEGKGLGLEFLRHIERTEIIAHVIDCATLEPDRDPMSDYQALENELALYADKLELPLGAISIPERPRIVILNKIDVPEAKELAEFVRPEFEKLGLKVFEISTASHEGLKELNFALSELVHEMREEVASREEAEEEARVVIKPLERTGRRPRRADEGGNALDFTVERRELGNGEVFYEVRGAKPERWVMQTNFDNDEAVGYLADRLAKLGVEDELRRKGARPGDEIRIGRGDRMVEFDWDPTISAGAEMLDGSNLGARGKDLRLEEQDPRAHRRSNAERRAQYHEMMDARAAVRDAMMAERKAGHWADPTVDDDRHDETSLFGHGESADDSASEE
>NZ_CP023192.1|WP_003829776.1|2024678_2024930_-|50S-ribosomal-protein-L27
MAHKKGASSSRNGRDSSPQYLGVKKFGGEAVVAGNIIVRQRGTNFHAGQNVGMGKDHTLFALADGSVKFGVRRDRKVVDVIAA
>NZ_CP023192.1|WP_014484324.1|2024952_2025261_-|50S-ribosomal-protein-L21
MYAIVKAGGHQEKVEVGDTILVNRLDAKKGDTVEFPVALLVDGAKVTLAAADLAKVSVKAEVVNDEAKGPKINIQKYKNKTGVARRKGHRQPLTIVKITAIA
>NZ_CP023192.1|WP_106622742.1|2025447_2028510_-|Rne/Rng-family-ribonuclease
MPTENREGFVGDETDNSTVSNTESQASGASEPNAEASQPTRRRRGGRRVVRGTGAAGASLELQVQEHAAPLFEAPALPDADASASAETTDNNASDDEKHPARRTRSRRSADNADYEDRPTRRRAVADDDDEPRPVRRRRTVSDDLEEDDERPIRRRRVASDDFDEDNDRLVRRRRSVIDDLEDDDAPRSSRRRTAVDDSDEDGDRPVRRRRSTTNDRDDRDDEPRSARRTRSRRSSEDAREENPDERVLDVIDALPAGHESARRGKPMTSLLFQEPVLPDMRNDDRDDEEDDGEQRSRSSRRSRAREDEADYEERPSRSRRSSRSDHGDHDDHDDRDDSRNNRRRNETQDDFDADGQSDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDITYSPIAEEENDEESDSTRTRSRRRRRRGSRNESGASNNDSESSENNGDDSRRRRDDRDERDRDDDEEQTVTRRRRRRRGGKNAESGDEQDDQQLTRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREKEHHTQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTEEE

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Crispr_ID: NZ_CP023192_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023192_4

2182280-2182356

Orphan

Consensus_repeat	Method
GCAAATCCCCCAACCAATCGAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023192_4

>merge|NZ_CP023192|4|2182280-2182356|CRISPRCasFinder
GCAAATCCCCCAACCAATCGAAGAACCACCCCGTCCACGGACCCTCAACGGGGCAAATCCCCCAACCAACCGAAGAA

>NZ_CP023192|4|4|2182280-2182356|CRISPRCasFinder
GCAAATCCCCCAACCAATCGAAGAA	CCACCCCGTCCACGGACCCTCAACGGG
GCAAATCCCCCAACCAACCGAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023192.1\|WP_106622711.1\|2177538_2181294_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP023192.1\|WP_014484404.1\|2170301_2172131_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP023192.1\|WP_032734693.1\|2165691_2166039_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023192.1\|WP_019727598.1\|2191999_2194747_+\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP023192.1\|WP_003829589.1\|2190591_2190969_+\|DUF4235-domain-containing-protein	unknown	unknown	gnl\|CDD\|379422
NZ_CP023192.1\|WP_106622709.1\|2166158_2167199_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP023192.1\|WP_106622713.1\|2191064_2191832_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP023192.1\|WP_014484406.1\|2175761_2177285_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP023192.1\|WP_106622712.1\|2182486_2183959_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP023192.1\|WP_015439325.1\|2186833_2187850_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP023192.1\|WP_019727591.1\|2174314_2174836_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP023192.1\|WP_003829607.1\|2181303_2182005_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP023192.1\|WP_052822451.1\|2185608_2186463_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP023192.1\|WP_100199007.1\|2189806_2190505_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP023192.1\|WP_003829604.1\|2184010_2184616_-\|DUF624-domain-containing-protein	unknown	unknown	gnl\|CDD\|377412
NZ_CP023192.1\|WP_103619686.1\|2188057_2189386_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379175
NZ_CP023192.1\|WP_003829602.1\|2184766_2185609_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP023192.1\|WP_003832382.1\|2169351_2170293_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|376782
NZ_CP023192.1\|WP_106622710.1\|2167828_2169247_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|340890
NZ_CP023192.1\|WP_014484405.1\|2172262_2174131_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NZ_CP023192.1\|WP_106622711.1\|2177538_2181294_-\|FtsX-like-permease-family-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	3.74352e-21
NZ_CP023192.1\|WP_014484404.1\|2170301_2172131_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.75794e-178
NZ_CP023192.1\|WP_019727598.1\|2191999_2194747_+\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	4.15446e-89
NZ_CP023192.1\|WP_003829589.1\|2190591_2190969_+\|DUF4235-domain-containing-protein	gnl\|CDD\|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	4.09412e-11
NZ_CP023192.1\|WP_106622709.1\|2166158_2167199_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	6.8441e-106
NZ_CP023192.1\|WP_106622713.1\|2191064_2191832_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.81489e-78
NZ_CP023192.1\|WP_014484406.1\|2175761_2177285_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	4.24587e-155
NZ_CP023192.1\|WP_106622712.1\|2182486_2183959_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP023192.1\|WP_015439325.1\|2186833_2187850_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.61006e-78
NZ_CP023192.1\|WP_019727591.1\|2174314_2174836_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.67897e-15
NZ_CP023192.1\|WP_003829607.1\|2181303_2182005_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.59092e-99
NZ_CP023192.1\|WP_052822451.1\|2185608_2186463_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	6.07357e-52
NZ_CP023192.1\|WP_100199007.1\|2189806_2190505_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.05315e-50
NZ_CP023192.1\|WP_003829604.1\|2184010_2184616_-\|DUF624-domain-containing-protein	gnl\|CDD\|377412	pfam04854, DUF624, Protein of unknown function, DUF624. This family includes several uncharacterized bacterial proteins.	1.29089e-07
NZ_CP023192.1\|WP_103619686.1\|2188057_2189386_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|379175	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	3.91779e-33
NZ_CP023192.1\|WP_003829602.1\|2184766_2185609_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.68174e-62
NZ_CP023192.1\|WP_003832382.1\|2169351_2170293_+\|FAD:protein-FMN-transferase	gnl\|CDD\|376782	pfam02424, ApbE, ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. It acts as an FAD:protein FMN-transferase, catalyzing the attachment of an FMN residue to a threonine residue of a protein via a phosphoester bond in such bacterial flavoproteins.	2.74395e-23
NZ_CP023192.1\|WP_106622710.1\|2167828_2169247_-\|sodium:solute-symporter	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.94787e-43
NZ_CP023192.1\|WP_014484405.1\|2172262_2174131_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.04788e-142

>NZ_CP023192.1|WP_003829607.1|2181303_2182005_-|ABC-transporter-ATP-binding-protein
MAYIEFDKVVKEYPSGGTSIRALDEASFTADQGELTVILGQSGAGKTTALNILGGMDTATSGRVVVGERDITGLRKRDLITYRRNDVGFVFQFYNLVPNLTALENVELASQICPDHFDPAETLRKVGLGERMNNFPGQLSGGEQQRVSIARAIAKKPKLLLCDEPTGALDYETGKEVLQLLQDICRDEGMTVMIITHNSALAPMAHKVIHFRSGTVTSEEINTAPQPIADIEW
>NZ_CP023192.1|WP_106622711.1|2177538_2181294_-|FtsX-like-permease-family-protein
MATARHSHTGFPGGRPVKHLVKQRSQSVKRPVKQSESDDRGSSVSAVFVKDALRCWLRSWKRFVSIAVITLLGVAVLTGIYAGCRDAFLAASRFYDQQGLHDLQVLSTYGLTGDDAAALRRVEGVETVQPERSQTVTATVKGTKKTVTMQEIGTEGLDQPYLQQGDMPSKAGEVAVTQQFLNDSGLEIGDDLTVTPRSASSTVLVGAEDKSNSGSSKSSDGDTDTVGAAEDATTSNNEKEQSPQFPTELTITAVVLDPSDLNNPVGYSGMTAFRSTSSEDYVFFAPSDGVTGNVYTAISIAVAGASQYDTFSDDYDAAIKTVADRIESQIQTQRQKARRQQIVTSAQNTLDAKADALKQLDEGQQQIDSNRAELEANETKLAESRTQLEQNKASITDGERQIAEGRAQIASARQQIAQGRQQIADARAQLESGKAQLTSARQQLDAAQAELTANRSKVEQGIAQIDQGVAQLDQMLQLIQQADDLLSQLDPNIDVDSSTWQTVKQLLASVGITVPDVPSISSLRQQLDAKQNELQSQRSDAIKQKTELQQTLDGTIAPAQNALDQQNAQLTAKEQEAAAGEAELNAKLAELESNTAQLETQSAQLEAQAAQLASGKQQLEEGEKQLKDGEQQLEDGKQQLEDAQQELDEKRSEAESEFAKQQRRIDDVANARWYMQTRSSIDGFSSLKSDVSSIESIGRAFPVVFLLVAVLMSLTTMTRMVEEDRGLIGTYLGLGYGGVVVSLRYLLFALLACLVGGGIGLLIGFLGIPAFLLIVIKGLYILPDVRLEYDWGYGTAGILLFVVGVGVATALACRSEIRHTPAALMRPKAPKAGARILLERIRPVWSRLSFLGKVTARNIFRFKSRLLMTVGGVAGCTALIICGFAINDTVDTIGVKQYGQIYQYDLMVVSNDDDAAVMRKQVKKDGRTTETLNLRVDSAEMSNAAQESETIQLMAVPNNSLNKLNDMVTLEEAGDEGWFGLPNFFGASGGGTVTLDDSGVIVAQSAANSLGVHAGDTVTVSNGGSSRAKIKVAAVVRNLIGSDVYISERLYDQKFAARGIDSSVSDGESSTLTWNAMLAKLKGSDGEQAEYADRLGEESSVVKAVSCAHLEATFKFDLMAAVVALIVGLAGGLALVVLFTLANTNVSERVREMATLKVLGFYDREVHNYVNREMMILTGMGVVVGLPLGRWIGGLLTAALNMPSLYFEVEVHWYSYAIAVAVTLAFALLVQLFTNPVLDRIEPVSSLKSVE
>NZ_CP023192.1|WP_014484406.1|2175761_2177285_-|amino-acid-permease
MADTNANGNAQQSGSKLKSVESLDQTNAMERGLSNRHVQFIAIGGTIGTGLFLGSGKSISLTGPSIVFVYILVGVIMFFLMRAIGEMMYRDPSQHTFINFITRYLGNGWGHFAGWTYWAALVLLGMTEITAVSTYFITFFDTFGIDLTHWKWLIELCFLVSLVSVNLIAVKVFGEVEFWFSMIKITLIGAMIVTAVVMIVIGYQYPAARIHGVDHVSPAGHAGLDNLFAGFSFAPNGWMAFLMSFQMVFFAYELLEFVGVTVSETKNPREVLPKAVNEIIVRVLIFYVGALVAIMCIVPWTSFKPNEDGSFASPFIMVFQYAGLNWASALVFFVVITAASSSLNSLLYSAGRHLYQLAEESPSPMLNKIGQVSDRKVPARAILVSAVLILLSPIVNAIPGVSGAFVLFSSASSAVFLFIYILTLVAHRKYRRSDDFIPDGFVMPVWKVLNTVAIAFFVFIYLTLFLADDTRNSAIAGLVWLIGFGGFSLLRERYRSRDLKAALEHKE
>NZ_CP023192.1|WP_019727591.1|2174314_2174836_-|MarR-family-transcriptional-regulator
MGFEQEAVGELYASVWGNRSKMQREFTRGAHGEQFVLRELSFKGTQTPSQLATALQASSGRISAVLSSLEKKGWITRDIDSNDRRIIRVSLTDSGREESHRMIDEMRSAICWIFSQMGERRTREFVDLLSEFTTYMSICHPGQPRPTAEQVRGAFAERDKRVVEHMASKHAEG
>NZ_CP023192.1|WP_014484405.1|2172262_2174131_-|ABC-transporter-ATP-binding-protein
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAARVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVATAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAIMMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTEPIVKNGTKRAADIAKTEQTGTVEFRNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQVLVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTPAGRKREALQLAADAANDGKLTDEQMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAEEAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHKELLENCEVYRQIAESQLSESELTA
>NZ_CP023192.1|WP_014484404.1|2170301_2172131_-|ABC-transporter-ATP-binding-protein
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNSIDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQTLGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKVSQKYFTRQQVALGDVNGHVEEMYAGHTIVKAYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVAIVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISACKAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG
>NZ_CP023192.1|WP_003832382.1|2169351_2170293_+|FAD:protein-FMN-transferase
MTGLTEQLPHTAAFPNALGTGLLLHTASALGGDLHQHIEDLISDYENVLSRFKGDSIVGQMRVATHGGTFDFPDWTLNLFDLYDHLFSATNGAIDPCVGEDLIRLGYDKSYSSVNEPNADEHTGAIHGRATWDHAIEHHGTTLVTHGPVALDFGACGKGYLVDLIAERLGVAQSDLRYVIDAGGDLLVHTSEPITIALEDPSDPANAVGVAEISQGAFCASSPSRRHWTDAAGHQLHHLLNAIDGVPVNSVAATWVAATPPSLATAQADGLATALFTTPAAQLRAHFPFECAILTADRSAAQSPDFPGSFFMR
>NZ_CP023192.1|WP_106622710.1|2167828_2169247_-|sodium:solute-symporter
MDNATAVSATNVSGGSLQSTIKDLPIAKVWAFAVGQFGWALLSGIISNWLVYFYQPDQETISQGQTVFVPQGLVVLGLVTVVGGITAFARFFDAFVDPAVASLSDRCDSKAGRRMPFLKFAALPLAVVTVLVFWSPINGTSWVNAAFLFVTVIGYYIALTFYCTPYNALIAELGHDSKQQLTISTAISFTWVAGTAIAYVAPVIWGAFVPMMGRITAIRVTFTIMAAVAFACMLVPPLAIREKDYVNSQPTSESTIESLKQTFFDGEFRKFVCSDVVYWVAITTFQTGLPFFVTSLLKLPETTTTIYFVLMTGVSVLFYLPVNILANRVGKKRLLLIAFVIFTCAFAFAGALGSGVLALMPAMAQGLTLSVVGAIPMAAFGILPQAIVANIADASSKTAGQDRQGMFYAARTFAMKMGQSVAMLLFTGVSTIGMASGAGYRIAAVCAAVLCGLGGIVFAFYNEKKVLHVLGA
>NZ_CP023192.1|WP_106622709.1|2166158_2167199_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLFGLGNTGSMTSADELNEQRDAEQSVAQVSERNDGIDAGEPAASQTRESAVTIPAGTVVLAATPIGNVGDASARLVAFLERADIVAAEDTRRLFDLARRLGVYVNGRVIAYHDHNERDKADGLLDQVETGATVLVVSDAGMPTINDPGLAIVRRAIERGLPVTCAPGPSAVLDALALSGLPTDRFCYEGFLPRKHAERVQYLRTLLGERRTIVFYETPHRIADSMDDLLDAFGPNRPMALCRELTKDYEQIRRGPIGEIRQSVIDDPPRGEMVLVIGGASSEEAEAAAPSTLSVEDMAVLAIDRALEDGLRIKDAIAQVVQEHPLADGSLANRKQVYAAVLEIKG
>NZ_CP023192.1|WP_032734693.1|2165691_2166039_+|hypothetical-protein
MRITGRHASRRLDRLHQAQRLPRASDIQSHSPHASAAVNHDAPPSPPIALTPSVACSPDTPIEVLWHIAQHAPELRRWLIANPRADAALLEFISQAGGPGVKRALAVLLESMEEE
>NZ_CP023192.1|WP_106622712.1|2182486_2183959_+|amino-acid-permease
MSTTDAPKKPRETDDVPVPATLRKSLKNRHIQLIALGGAIGTGLFYGSSESIALAGPSILLAYLIGGFAIFMIVRALSEMSVEDPKAGAFSYYATRYWSKRAGFISGWNYWFNYILVSMVELAVVGSFVNYWLPAIPTWVSAAVFLVLITAANLLGVSKFGEFEFWFAIIKIVAVIAMIIGGLAVIIFALPTASGIKASFANWFTVGGGFFPNGLMGHTDNGWTGLLMALVVVMFSFGGTELIGITAGETEDPKTTIPRATNDIIWRILVFYIGALGVIMAVVPWNTIDGKSSPFVQIFDSVGIHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAKQGNAPAYLGKLNSKGVPVAGVLTSAVITAIAVVVVFVWPEFAFNYLMSIATIAGIINWTMIMFTEMKFRKVVEAGGAPEDSDLAGKSGQEALDAIHFKLPFAKVTPWVVLVFLALVVVLMCFSASYRIAVIAGVIWLAILFVAYQITQAKK
>NZ_CP023192.1|WP_003829604.1|2184010_2184616_-|DUF624-domain-containing-protein
MNWLAPDSKFMRAWSNLIDGVWVNILMLVTSIPIITIGAALTAGHDACRRSIEGEGKGVTANYFRSFKANFVKATLLWLPFLVVLIALAWSWIVLQFTPLLIIKFALTIIWLIGFEWVFALQARFENTVAGTLKNAFIFGISHIAMTAALVVVDAVFVALLVGSWFYMPGGLFLLVILGYGTMLMLHIPVTERVFKPYLQQ
>NZ_CP023192.1|WP_003829602.1|2184766_2185609_-|carbohydrate-ABC-transporter-permease
MNENKPVKHGALWTVLFAVVSLFWIFPIVLVLINSFKQKAYISKNAFSLPAGKAFVGFENYVRGVETTQFFASFGWTLLITVGSVILILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVPFQMVMFTLSKIADMLKLNTPWGLCIVYLGFGAGLAVFIFTGVIKGIPAELEESAMIDGASVPRIFFQIVVPIMKPSIVSVAILEAMWIWNDYLLPYLTLDLGKYKTISVAVQYLKGGYGSVDMGAMMACLVLAIIPIIVFYLVCQKYIVSGVMAGAVKG
>NZ_CP023192.1|WP_052822451.1|2185608_2186463_-|sugar-ABC-transporter-permease
MISMAGKAIRRWWALFALPTFAAFIIGFLVPFIMGVYLSFCEFTTVTDGEWMGLKNYTKALKDKEFLHALGFSTAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGIILGYIWLLLLNGVLAHWGRALTYKASYGFWGLVILVCWQQIGYMMIIYIAGLQALPTDVLEAAAVDGANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGAPSNMSEGLALNITRTFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA
>NZ_CP023192.1|WP_015439325.1|2186833_2187850_+|LacI-family-transcriptional-regulator
MTTSIQDVAQKAGVSISTVSRSFTRPDLVSTKTRERVLAIADELNFSLSRSAAALKSGRSLRIAVLMSGHIRLWFTASVIEGLNEVLHAAGYDISVFQISSIEERREFFEMLPVRRNADAVIVVSFDIDNNEITQLASADVPIIGINSVDPEVRGFTAAVNINDVQGSTLAARHLINLGHRDIAYISTDRDVSLNFSVQNRFGAFTECCRNEGIEPQVIVCKVDDAGRYQISDVVTQLMSLPKLPTAIACQEDGIALPLMFQLERNGLSVPGDVSLIGYDDSFYTDDIGLTTIRQNPVGMARKAAHMTLDLIEEKPVDEPYVVAPAHLVVRSSTAKIR
>NZ_CP023192.1|WP_103619686.1|2188057_2189386_-|ABC-transporter-substrate-binding-protein
MMNRTVKSAVAVAAIAAMSLGTLAACGSSTSGDDSKGKVYYLNFKPEAADQWAALAKEYTKEKGVDVKVQTAASGTYEQTLKSEIAKTEAPTLFQVNGPVGYQNWKKYTADMSNTDVYKELTNQDVALKDGDKVVGVPYVMETYGLIYNKDILNKYFALDGAKATSMDEIDNFDTLKAVADDMQARKDELGIKGAFTSAGFDSSSDWRFKTHLANLPLYYEFKDDNVTEQPAKIKGTYLPNYKKIFDLYITDSTTEPTQLSAKTGDDANSEFALGEAAFYQNGTWAWTDLQKAGMKAESVGMMPIYIGVKGEEKQGLATGSENYWCINDKASDADKKATEDFLSWVITSDTGKKAISQDMGFTTPFKTFDDVKFDNPLTEAAVEDQKSGKTQVSWNFTMMPSEEWKNKVGQALLEYAQGTGKWDAVKTAFVDGWASEYEASH
>NZ_CP023192.1|WP_100199007.1|2189806_2190505_-|histidine-phosphatase-family-protein
MDGTVAVDASCGKAGFLVLLRHGQTFWSESGQHTGRTNIPLTEVGRQQAMDAGARLREAFPEGFDPECVFSSPLKRACQTAELAGFAQHGILDGIAEWDYGRAEGRTRQQVSEASGFSWDVWRDGPRSLTPTLEGDWVDTLPDGEQVNVHSGAGETLDEVAARARTAIEEVTPLLQSGRNVLLVAHAHILRILTSQWLNVDPQFARLLRLDTAHYSVLSVYKGDNVIERWNA
>NZ_CP023192.1|WP_003829589.1|2190591_2190969_+|DUF4235-domain-containing-protein
MSDETSTGIASDADRVVEGLHRIDQKVDDLRNQRLNDPDSLGDKLVKSAVPALAGLVAGKLFQIAWDKGAARRNVIKGLAADAPQGLAMSLAFAAISAAFGAIVSQLSNQGSQAFVERRHRKASR
>NZ_CP023192.1|WP_106622713.1|2191064_2191832_+|NADPH-dependent-oxidoreductase
MATNATIETLLNRRSIRKFKDEPIDDDATATLETVAQHAASSQFLNDWSAIRVSDPAIKARLAEIGNQPYIATAPLLYVFVIDEHRNARIAQRKGIDPTSDEFHLKYSYRFTQAQNDAVLALHAMETAAYSLGLGGVILGSLLNDIPALIDLLNLPEYTYPVLGLALGKPDQEPTLKPRMPRSMQFFDNTYPADADGMLEQLPDFDNKVHQYYDLRQADRPVDAFSDQIVSVSRQGVNGKTLLDKAAAQGFQLDK
>NZ_CP023192.1|WP_019727598.1|2191999_2194747_+|YhgE/Pip-domain-containing-protein
MRTVWQVFLRDCKRILRNPVAAVVTLGVAVLPSLYAWFNILANWDPYSATGNLQVAVANEDRGTTNDLVGHLNAGKQVVIKLKHNDQLGWRFVSNEEQAVQGVQTGDYYAAIVLPKDFSASLVDSLTGTSKQPKIKYYVNEKKNAIAPKITDTGATTIDEQINSTFVTTVSNTVAAAISQAGDDLDQATNSTQNNVVADLGSVLSTIATVQDALTDLRTTLDRSDTALADARSTTASLQRSITAAQQASQQSGALLAETQDGSQVFAASLVSALDTSSAQLSGLTVNVNNAAGTINQSFNTAQNSVDTITNALNSPLDKTATSLDTLKDALNKAGISADTTDPTGKRIWDHINAVDDAISTQQAKINTFHEDTTRFIDSGKSATTNLSGAMSGTATGGIAALNTARSSLTGTVMPSLTSSLNSFAALNGTLGGTLTSLSGTLDQTNGLFDQLSSTIAQTRTTIGSAQDSLNQIIDDVSTVRTDVATLDSSAVYQKIRDTMHLDDKGFGEFMGSPVTLTTKVVYAIDNYGSAVTPFYTNLALWVGGFVLIAIYKLEVDRESIRRINAKQAYLGRWMLLVTIGFLQAIIATVGDLVLGIQCEHPLLFILAGIFCSFIYINIIYALAVAFRHIGKAIAVILVIVQIPGASGLYPIEMMPDFFRKLHPWLPFTYGINAMRGPIAGTYSNHYWLDMLHLFWYLPAALFVGLVVRRYAMNLNALFDRRLGDTDLMITEHNSMVNEQVSLASVFRTVSDSKELKAIITRRAHRFFARYPMMIVAGLALLTILPFVFLILLFVTQEKIAMLTSWILSIILIDAYLIVVEYTRESYAMQLGVSAMNADEFRDVMLNGYVWRRFRSHGRHEAASAESAVDTDPDIGEVTEQLTPFERTGSTDSSDSSKSSESTITDTNPAQGGAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023192_2	2.2\|1668217\|35\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1668217-1668251	35	NZ_KM406416	Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence	88215-88249	0	1.0
NZ_CP023192_2	2.4\|1668352\|33\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1668352-1668384	33	NZ_KM406416	Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence	171031-171063	2	0.939
NZ_CP023192_1	1.13\|1661179\|34\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1661179-1661212	34	NC_017767	Thermus thermophilus HB8 plasmid pVV8, complete sequence	58815-58848	6	0.824
NZ_CP023192_1	1.4\|1660576\|34\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1660576-1660609	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1174959-1174992	7	0.794
NZ_CP023192_1	1.9\|1660912\|34\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1660912-1660945	34	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	231055-231088	7	0.794
NZ_CP023192_2	2.24\|1669703\|33\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669703-1669735	33	NZ_CP013345	Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence	200364-200396	7	0.788
NZ_CP023192_2	2.25\|1669769\|35\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669769-1669803	35	NZ_CP032703	Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence	541728-541762	7	0.8
NZ_CP023192_1	1.13\|1661179\|34\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1661179-1661212	34	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	456877-456910	8	0.765
NZ_CP023192_1	1.13\|1661179\|34\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1661179-1661212	34	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	623506-623539	8	0.765
NZ_CP023192_1	1.13\|1661179\|34\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1661179-1661212	34	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	105074-105107	8	0.765
NZ_CP023192_2	2.3\|1668285\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1668285-1668318	34	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	267411-267444	8	0.765
NZ_CP023192_2	2.4\|1668352\|33\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1668352-1668384	33	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	123793-123825	8	0.758
NZ_CP023192_2	2.7\|1668552\|35\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1668552-1668586	35	NZ_CP038637	Cupriavidus oxalaticus strain X32 plasmid unnamed2, complete sequence	109705-109739	8	0.771
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP034568	Vibrio parahaemolyticus strain D3112 plasmid p2, complete sequence	92066-92099	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP033143	Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence	27712-27745	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP010885	Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence	73144-73177	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP013250	Vibrio parahaemolyticus strain FORC_022 plasmid, complete sequence	25345-25378	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP034291	Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence	67777-67810	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP021149	Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence	48573-48606	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP007006	Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence	19195-19228	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP034300	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence	33412-33445	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP034296	Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence	33869-33902	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP019298	Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence	48036-48069	8	0.765
NZ_CP023192_2	2.19\|1669367\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669367-1669400	34	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	88964-88997	8	0.765
NZ_CP023192_2	2.20\|1669434\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669434-1669467	34	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	947-980	8	0.765
NZ_CP023192_2	2.20\|1669434\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669434-1669467	34	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	947-980	8	0.765
NZ_CP023192_2	2.40\|1670779\|33\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1670779-1670811	33	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	220380-220412	8	0.758
NZ_CP023192_2	2.20\|1669434\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669434-1669467	34	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	181373-181406	9	0.735
NZ_CP023192_2	2.20\|1669434\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669434-1669467	34	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	241595-241628	9	0.735
NZ_CP023192_2	2.25\|1669769\|35\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669769-1669803	35	NZ_CP040453	Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence	55617-55651	9	0.743
NZ_CP023192_2	2.44\|1671047\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1671047-1671080	34	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	89622-89655	9	0.735
NZ_CP023192_1	1.4\|1660576\|34\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1660576-1660609	34	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	149248-149281	10	0.706
NZ_CP023192_2	2.3\|1668285\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1668285-1668318	34	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	363569-363602	10	0.706
NZ_CP023192_2	2.13\|1668963\|33\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1668963-1668995	33	NZ_CP006371	Aureimonas sp. AU20 plasmid pAU20d, complete sequence	39703-39735	10	0.697
NZ_CP023192_2	2.25\|1669769\|35\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1669769-1669803	35	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	362265-362299	10	0.714
NZ_CP023192_2	2.40\|1670779\|33\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1670779-1670811	33	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	336171-336203	10	0.697
NZ_CP023192_2	2.44\|1671047\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1671047-1671080	34	NZ_CP037914	Sphingomonas sp. AAP5 plasmid p213, complete sequence	89011-89044	10	0.706
NZ_CP023192_1	1.5\|1660643\|34\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1660643-1660676	34	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1684394-1684427	11	0.676
NZ_CP023192_1	1.5\|1660643\|34\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1660643-1660676	34	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1950643-1950676	11	0.676
NZ_CP023192_1	1.6\|1660710\|35\|NZ_CP023192\|CRISPRCasFinder,CRT,PILER-CR	1660710-1660744	35	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1371549-1371583	11	0.686
NZ_CP023192_2	2.42\|1670912\|34\|NZ_CP023192\|PILER-CR,CRISPRCasFinder,CRT	1670912-1670945	34	NZ_CP026974	Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence	354984-355017	12	0.647

1. spacer 2.2|1668217|35|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 0, identity: 1.0

tcagcgttcctggaaaggccggaactccacttcca	CRISPR spacer
tcagcgttcctggaaaggccggaactccacttcca	Protospacer
***********************************

2. spacer 2.4|1668352|33|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 2, identity: 0.939

cgggcgcatcggcacctgggtgtggacgatcat	CRISPR spacer
cgggcgcatcggcacctgggtgtgggcgatcct	Protospacer
*************************.***** *

3. spacer 1.13|1661179|34|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NC_017767 (Thermus thermophilus HB8 plasmid pVV8, complete sequence) position: , mismatch: 6, identity: 0.824

atgttcagggcggcgttcatgtcccggtcgtgca	CRISPR spacer
aggttcagggccgcgttcaggtcccggtccagct	Protospacer
* ********* ******* *********  **

4. spacer 1.4|1660576|34|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.794

cggttcggacggcgccatcgaccagtgggtggac	CRISPR spacer
tggttcggacggcgccatcgagcggtgggccatc	Protospacer
.******************** *.*****. . *

5. spacer 1.9|1660912|34|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

atccg--ggtgtgattttgaagaccctgcttgacga	CRISPR spacer
--ccggcgaggtgattttgatgaccctgcttggcgg	Protospacer
  ***  *. ********** ***********.**.

6. spacer 2.24|1669703|33|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

-catccagtcgagcatgtggccggtctcgtggaa	CRISPR spacer
gcgggc-gccgatcatgtggccggtctcgaggaa	Protospacer
 *.  * *.*** **************** ****

7. spacer 2.25|1669769|35|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

ctgcccgcgtcgctgccgatcatgccggcgttggc	CRISPR spacer
cagcctgcgtcgctgccgaccatgccggccatgat	Protospacer
* ***.*************.*********  **..

8. spacer 1.13|1661179|34|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.765

atgttcagggcggcgttcatgtcccggtcgtgca	CRISPR spacer
acggtgagcgcggcgttcatgtcccgggcgcggc	Protospacer
*.* * ** ****************** **.*

9. spacer 1.13|1661179|34|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.765

atgttcagggcggcgttcatgtcccggtcgtgca	CRISPR spacer
acggtgagcgcggcgttcatgtcccgggcgcggc	Protospacer
*.* * ** ****************** **.*

10. spacer 1.13|1661179|34|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.765

atgttcagggcggcgttcatgtcccggtcgtgca	CRISPR spacer
acggtgagcgcggcgttcatgtcccgggcgcggc	Protospacer
*.* * ** ****************** **.*

11. spacer 2.3|1668285|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.765

atggtgacgccgcgaacgtgacggtcacggacgt	CRISPR spacer
gtggtgaccccgagaacgtgacggtcttcggcga	Protospacer
.******* *** ************* . *.**

12. spacer 2.4|1668352|33|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

cgggcgcatcggcacctgggtgtggacgatcat	CRISPR spacer
ctcgctgatcgtcacctgggtgttgacgatctc	Protospacer
*  **  **** *********** ******* .

13. spacer 2.7|1668552|35|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038637 (Cupriavidus oxalaticus strain X32 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

cgttcgactgcgcggcgatgtgcgccgtgtacaag	CRISPR spacer
catgcgtctgcgcggcgatgtgcgccttgttaatc	Protospacer
*.* ** ******************* ***  *

14. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034568 (Vibrio parahaemolyticus strain D3112 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

15. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033143 (Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

16. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010885 (Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

17. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013250 (Vibrio parahaemolyticus strain FORC_022 plasmid, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

18. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034291 (Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

19. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021149 (Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

20. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007006 (Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

21. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034300 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

22. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034296 (Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

23. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019298 (Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

24. spacer 2.19|1669367|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ******

25. spacer 2.20|1669434|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.765

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggtgcgaagtgcggcggcgcttttcaaggatgc	Protospacer
 ***  * ..************ ***.*******

26. spacer 2.20|1669434|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.765

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggtgcgaagtgcggcggcgcttttcaaggatgc	Protospacer
 ***  * ..************ ***.*******

27. spacer 2.40|1670779|33|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

gggaggttgccacgccctgctgttccatctcgt	CRISPR spacer
ccgaggtggccgcgccctgctgttccaccgccg	Protospacer
  ***** ***.***************.* *

28. spacer 2.20|1669434|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 9, identity: 0.735

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggccgcgcgtgcggcgtcgctggtcgaggatgc	Protospacer
 **..*   .******* ***** **********

29. spacer 2.20|1669434|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 9, identity: 0.735

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggccgcgcgtgcggcgtcgctggtcgaggatgc	Protospacer
 **..*   .******* ***** **********

30. spacer 2.25|1669769|35|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040453 (Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ctgcccgcgtcgctgccgatcatgccggcgttggc	CRISPR spacer
cgggggctggcgctgccgctgatgccggcgttggc	Protospacer
* *    .* ******** * **************

31. spacer 2.44|1671047|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

atgctcggtgtccagatgttccccggatacgatg	CRISPR spacer
gcgctcggtgtcgagatcttccccggcttcccgg	Protospacer
..********** **** ******** * *   *

32. spacer 1.4|1660576|34|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 10, identity: 0.706

cggttcggacggcgccatcgaccagtgggtggac	CRISPR spacer
ggtttcgggcggcgccatcgacgagtggcaccgg	Protospacer
 * *****.************* *****    .

33. spacer 2.3|1668285|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 10, identity: 0.706

atggtgacgccgcgaacgtgacggtcacggacgt	CRISPR spacer
ggaccgacggagcgaacgtgacggtcacggtccc	Protospacer
. . .****  ******************* * .

34. spacer 2.13|1668963|33|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006371 (Aureimonas sp. AU20 plasmid pAU20d, complete sequence) position: , mismatch: 10, identity: 0.697

tgatcgccgtgatcacggaggtcaccacggtta	CRISPR spacer
agatcgccgtggtcgcggaggtcacggaattct	Protospacer
 **********.**.********** . . *.

35. spacer 2.25|1669769|35|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.714

ctgcccgcgtcgctgccgatcatgccggcgttggc	CRISPR spacer
agaaccgcatcgctgccgatcatgcgggcgtacct	Protospacer
  . ****.**************** *****   .

36. spacer 2.40|1670779|33|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

gggaggttgccacgccctgctgttccatctcgt	CRISPR spacer
gctgacgtgccacgccctgctgctccaactcca	Protospacer
*  ..  ***************.**** ***

37. spacer 2.44|1671047|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037914 (Sphingomonas sp. AAP5 plasmid p213, complete sequence) position: , mismatch: 10, identity: 0.706

atgctcggtgtccagatgttccccggatacgatg	CRISPR spacer
gtactcggtgtccagatcttgcccggaagcttca	Protospacer
.*.************** ** ****** .*  ..

38. spacer 1.5|1660643|34|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
ttccggtgcctgctcacaaggacagacgaagctc	Protospacer
 ****.******** **********. .*.  ..

39. spacer 1.5|1660643|34|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccgatgcctgctgacaaggacaggaaagcact	CRISPR spacer
ttccggtgcctgctcacaaggacagacgaagctc	Protospacer
 ****.******** **********. .*.  ..

40. spacer 1.6|1660710|35|NZ_CP023192|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 11, identity: 0.686

tagtagatttccgcaccgttggcctgcgactcgaa	CRISPR spacer
ccgaccatttccgcaccgtcggcctgggacttttc	Protospacer
. *   *************.****** ****.

41. spacer 2.42|1670912|34|NZ_CP023192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026974 (Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

cacaatggagtttcggacgccgcttgcaggtctt	CRISPR spacer
atggttggggtttgggacgccgcttgcagtcaag	Protospacer
   . ***.**** *************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

344826 : 400358

Mycobacterium_phage(22.22%)

integrase,transposase,tRNA

attL 344934:344950|attR 400550:400566

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080560846.1\|344826_345993_-\|transposase	IS256-like element ISBibr1 family transposase	NA	NA	NA	NA
344934:344950	attL	NA	NA	NA	NA
WP_025221100.1\|346503_347196_-	hypothetical protein	NA	NA	NA	NA
WP_014483389.1\|347221_347926_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.6e-24	31.0
WP_025262718.1\|348510_349113_+	response regulator transcription factor	NA	NA	NA	NA
WP_015438334.1\|349124_350291_+	Two-component sensor protein	NA	NA	NA	NA
WP_025262719.1\|350928_351150_+\|transposase	transposase	NA	NA	NA	NA
WP_014483392.1\|351783_352989_+	MFS transporter	NA	NA	NA	NA
WP_003828131.1\|353154_353466_+	hypothetical protein	NA	NA	NA	NA
WP_003828132.1\|353481_353847_+	hypothetical protein	NA	NA	NA	NA
WP_074525445.1\|353893_354055_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_003828134.1\|354088_354766_-\|integrase	site-specific integrase	A0A2D1G8E2	Mycobacterium_phage	6.6e-22	33.5
WP_014483394.1\|355204_355939_+	aquaporin family protein	NA	NA	NA	NA
WP_025262721.1\|356022_358659_-	HAD-IC family P-type ATPase	E4ZFI9	Streptococcus_phage	4.8e-44	25.5
WP_015438337.1\|358768_359050_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA
WP_106622466.1\|359197_360604_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_106622723.1\|360672_361230_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_025262724.1\|361318_362257_+	RNA methyltransferase	NA	NA	NA	NA
WP_015438340.1\|362457_363396_+	ATP-binding cassette domain-containing protein	M1HS04	Acanthocystis_turfacea_Chlorella_virus	5.4e-06	27.6
WP_025262725.1\|363392_364439_+	tetraspanin family protein	NA	NA	NA	NA
WP_025262726.1\|364514_365477_-	hypothetical protein	NA	NA	NA	NA
WP_011068473.1\|366280_366580_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_025262727.1\|366583_368125_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_016462139.1\|368149_369649_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_106622724.1\|369816_370836_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003828150.1\|370842_371157_+	DUF2469 domain-containing protein	NA	NA	NA	NA
WP_014483403.1\|371327_372941_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014483404.1\|373300_375277_+	transcription termination factor Rho	NA	NA	NA	NA
WP_003828155.1\|375522_375852_+	aminotransferase class IV	NA	NA	NA	NA
WP_131068293.1\|375873_376902_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.0e-06	23.6
WP_003828158.1\|377630_378506_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003828159.1\|378767_380090_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003828160.1\|380267_381080_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_003828161.1\|381081_381951_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_014483407.1\|381993_383796_+	alpha-galactosidase	NA	NA	NA	NA
WP_015438349.1\|384195_384585_+	chorismate mutase	NA	NA	NA	NA
WP_015438351.1\|386748_389484_-\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	1.0e-158	37.1
WP_038426893.1\|389604_391134_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019727750.1\|391168_391837_-	endonuclease III	NA	NA	NA	NA
WP_095256841.1\|391861_392650_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.5e-13	34.0
WP_019727752.1\|392804_393509_-	hypothetical protein	NA	NA	NA	NA
WP_015438356.1\|393568_394147_-	manganese efflux pump	NA	NA	NA	NA
WP_015438357.1\|394380_394875_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	2.4e-29	46.7
WP_025262730.1\|394960_397189_-	alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase	NA	NA	NA	NA
WP_021649325.1\|397435_399370_+	hypothetical protein	NA	NA	NA	NA
WP_106622534.1\|399533_400358_+\|integrase	tyrosine-type recombinase/integrase	A0A2D1G8E2	Mycobacterium_phage	5.4e-50	42.0
400550:400566	attR	NA	NA	NA	NA

DBSCAN-SWA_2

556420 : 564723

Streptococcus_phage(66.67%)

integrase

attL 550650:550665|attR 573186:573201

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
550650:550665	attL	NA	NA	NA	NA
WP_106622561.1\|556420_557800_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	7.7e-17	27.6
WP_106622727.1\|557873_559196_+	ABC transporter permease	NA	NA	NA	NA
WP_106622562.1\|559208_560519_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_002347235.1\|560532_561165_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.8e-22	34.8
WP_106622563.1\|561330_561690_-	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	2.3e-21	45.0
WP_106622564.1\|562210_562630_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	4.0e-25	46.7
WP_106622565.1\|562626_562860_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_106622566.1\|563250_563454_+	excisionase	A0A1S5SF07	Streptococcus_phage	2.8e-24	80.6
WP_106622567.1\|563532_564723_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	2.6e-154	66.8
573186:573201	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023192

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection