CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP025264	Burkholderia pseudomallei strain MSHR1435 chromosome 1, complete sequence	1 crisprs	cas3,DEDDh,csa3,DinG	0	0	7	0
NZ_CP025265	Burkholderia pseudomallei strain MSHR1435 chromosome 2, complete sequence	4 crisprs	cas3,DinG,csa3,PD-DExK	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025264_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025264_1

3985363-3985442

Orphan

Consensus_repeat	Method
ACGGAATGGGCCCCGGCATGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025264_1

>merge|NZ_CP025264|1|3985363-3985442|CRISPRCasFinder
ACGGAATGGGCCCCGGCATGATGGGCGGCGGCTACGGGCGCGGAATGATGGGCGGCTACGGAATGGGGCCCGGCATGATG

>NZ_CP025264|1|1|3985363-3985442|CRISPRCasFinder
ACGGAATGGGCCCCGGCATGATG	GGCGGCGGCTACGGGCGCGGAATGATGGGCGGCT
ACGGAATGGGGCCCGGCATGATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025264.1\|WP_004523120.1\|3991383_3992478_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	unknown	unknown	gnl\|CDD\|185333
NZ_CP025264.1\|WP_004523116.1\|3986395_3986944_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025264.1\|WP_004523107.1\|3978446_3978731_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025264.1\|WP_012729746.1\|3979765_3980323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025264.1\|WP_101329566.1\|3975743_3977297_+\|deoxycytidylate-deaminase	unknown	unknown	gnl\|CDD\|225042
NZ_CP025264.1\|WP_004524603.1\|3995105_3995666_-\|spermidine-N1-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
NZ_CP025264.1\|WP_004523114.1\|3985887_3986004_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025264.1\|WP_004523110.1\|3981780_3982893_-\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212521
NZ_CP025264.1\|WP_004523111.1\|3982921_3984016_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP025264.1\|WP_004197759.1\|3993502_3994057_-\|YaeQ-family-protein	unknown	unknown	gnl\|CDD\|377782
NZ_CP025264.1\|WP_004189258.1\|3980894_3981770_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP025264.1\|WP_004200731.1\|3977967_3978450_+\|DUF2778-domain-containing-protein	unknown	unknown	gnl\|CDD\|378506
NZ_CP025264.1\|WP_004523117.1\|3987206_3988655_+\|RNA-polymerase-sigma-factor-RpoD/SigA	unknown	unknown	gnl\|CDD\|274108
NZ_CP025264.1\|WP_004197761.1\|3992879_3993296_+\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|319916
NZ_CP025264.1\|WP_076847798.1\|3988673_3990275_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP025264.1\|WP_004523106.1\|3977280_3977484_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025264.1\|WP_004533530.1\|3994272_3994617_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025264.1\|WP_004523112.1\|3984158_3985127_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP025264.1\|WP_004523108.1\|3978804_3979818_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|222860
NZ_CP025264.1\|WP_004535730.1\|3990445_3991387_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200

Protein	Function_ID	Function_description	E-value
NZ_CP025264.1\|WP_004197759.1\|3993502_3994057_-\|YaeQ-family-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	3.23549e-104
NZ_CP025264.1\|WP_004523110.1\|3981780_3982893_-\|histone-deacetylase	gnl\|CDD\|212521	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors.	1.0559e-172
NZ_CP025264.1\|WP_101329566.1\|3975743_3977297_+\|deoxycytidylate-deaminase	gnl\|CDD\|225042	COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism].	9.15633e-28
NZ_CP025264.1\|WP_004523108.1\|3978804_3979818_-\|phage-portal-protein	gnl\|CDD\|222860	PHA02536, Q, portal vertex protein; Provisional.	0
NZ_CP025264.1\|WP_004524603.1\|3995105_3995666_-\|spermidine-N1-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	7.47948e-86
NZ_CP025264.1\|WP_004523111.1\|3982921_3984016_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.91791e-149
NZ_CP025264.1\|WP_004189258.1\|3980894_3981770_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP025264.1\|WP_004200731.1\|3977967_3978450_+\|DUF2778-domain-containing-protein	gnl\|CDD\|378506	pfam10908, DUF2778, Protein of unknown function (DUF2778). This is a bacterial family of uncharacterized proteins.	2.57059e-50
NZ_CP025264.1\|WP_004535730.1\|3990445_3991387_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	9.65357e-54
NZ_CP025264.1\|WP_004197761.1\|3992879_3993296_+\|lactoylglutathione-lyase	gnl\|CDD\|319916	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins. Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.46868e-30
NZ_CP025264.1\|WP_076847798.1\|3988673_3990275_-\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP025264.1\|WP_004523112.1\|3984158_3985127_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.17839e-71
NZ_CP025264.1\|WP_004523117.1\|3987206_3988655_+\|RNA-polymerase-sigma-factor-RpoD/SigA	gnl\|CDD\|274108	TIGR02393, RNA_polymerase_sigma_factor_RpoD, RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. [Transcription, Transcription factors].	7.15457e-88
NZ_CP025264.1\|WP_004523120.1\|3991383_3992478_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	8.19665e-122

>NZ_CP025264.1|WP_004523112.1|3984158_3985127_+|LysR-family-transcriptional-regulator
MRRIDLLSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELSLSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSNRGLLCASPGYLARRGRPTAPADLAQHDCVIYRHPTLANTWTFERGGVRARLEPKGPLVTDDYSLALAAALDGAGVLPCPQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLADSEARVARVLGDALCADLARR
>NZ_CP025264.1|WP_004523111.1|3982921_3984016_-|polyamine-ABC-transporter-substrate-binding-protein
MKRIAWLAAVLASLACAAARAADGNVLNIYNWAEYFAPDTIAGFEKETGIKVRLDVYDSNEALQTKLTTGNSGYDLVFPSNDFLARQIQAGLYRKLDKSRLPNLTNLDPAIVARAAEVDPGNQYSVPYMQGTFGLGLNVAKVKQALGGPLPANTLELIFNPAYAAKLERCGIAFNDAGSEVFPLALRYIGRDPNTTDPRDYEAALDMMKTIRPTIRQFIATPVMNDLATGDVCVVTGYSGAVLVAARRAAEAKNGQQIVYSLPSAGAPFWFDSMAIPKGAAHADHALRFIDYILRPDVVAKISNKVMYPNPNRVATPLVDRRLTANPAIYPDAATMRTLWVKRPMPPQAMRMQTRYWTRFKTGY
>NZ_CP025264.1|WP_004523110.1|3981780_3982893_-|histone-deacetylase
MIPTGLLFDPAFLSHRQGDLVYVVPHGTLNLGEHFDSPLRLAYTKQLLDAVGMTERLTRVAFARATDEQLLRVHRPEYLRQLAEACAVAGEQVVRLGDDAAGSASTEDVARLAAGAACAAVDAVMTGPLRQAYALIRPSGHHAGADFAMGYCYYNNVAIAARHAQAAHGVERVAIVDWDVHHGNGTQQAFYDDPSVLFVSLHEAANFPVDGGEARETGGGAGAGYNANVPLPSGTGDAGYRHAFDELVLPLVEAFAPQLILVSAGQDANAFDPLGRMRVQRDGFRHMARALRQAAGGACGGRIVMLQEGGYSLPYLPIATLGVLEGLVGWNAPFDDPHQFVQYPLGEGERAAVKAARAALAPYWPTLHRS
>NZ_CP025264.1|WP_004189258.1|3980894_3981770_-|N-carbamoylputrescine-amidase
MRKTTVAVTQMACDWNVDANLSRAERLVRDAAARGAQIVLLQELFETPYFCIDQHPAHLALAQPYEGHPWLMRFASLARELGVVLPVSFFERAGQTQFNSVAIFDADGRALGIYRKTHIPDGPGYTEKYYFTPGDTGFRVWDTAYGRIGVGICWDQWFPECARAMALAGAELLLYPSAIGSEPHDASIDSRAHWRNAQRGHAAANLMPVAASNRVGVERGASGEIVFYGSSFIAGADGEMIVECDRHGEAIATAEFDLDALAYRRRGWGVFRDRRPECYRALSEGAADRVR
>NZ_CP025264.1|WP_012729746.1|3979765_3980323_+|hypothetical-protein
MKTSARAGARIWRGLFLKVVAAELVTFEHAEGAVVDARRRHDDNPPKTRCLSIHRLPRGQPPQYHIAKSANADAAAISSGIPHTRCPNAARRMRPAMHNGPRAEAAASSRAIYRPPAAAHSRARHRHLAKRPACRCEPVFSVSGRSEMNRLKRILNDQTIRENRASQARPREENHLDGVPPDKGK
>NZ_CP025264.1|WP_004523108.1|3978804_3979818_-|phage-portal-protein
MRNRPRQIRAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSALFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEFAPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAELNDWLGEEVVTFDDYEIPPAPVAA
>NZ_CP025264.1|WP_004523107.1|3978446_3978731_+|hypothetical-protein
MKTIGRILLALVLTWPLLTGISSLPLLTHWFANGGEGWNALSPVFRALGSDGGEQNEEIFVGILLVISFVLALVLSFALFGLVDRLRHSTDRRA
>NZ_CP025264.1|WP_004200731.1|3977967_3978450_+|DUF2778-domain-containing-protein
MPAECTFVLNRSRLSTLTCPGFGSVPAFSGNGRYINDPGSTAVADKGPLPAGVYYIIDRQSGGHLGWFRDTVMDAALNTYRAEWFALYRIDGQIDDWTIVNGIRRGHFRLHPVGRLGESDGCITLTSRGQFDKLRAFLKAQPTTQVPGTSFRAYGKVTVK
>NZ_CP025264.1|WP_004523106.1|3977280_3977484_+|hypothetical-protein
MKMKDEKQASFDFDRPSKSTSNIQKISASKMERNFRVIRSSMERDTNAITEQDVCAINKRILDLAKQ
>NZ_CP025264.1|WP_101329566.1|3975743_3977297_+|deoxycytidylate-deaminase
MTAQAVQQVVQLKKASDSRASVKETQTEELVIALCGPIGSPIKRVGQEIAEILKHDYAYDVEIIRLSEFVREKAPEVLNKSVDGSSEYNRVQSLIQLGNDLRDKYDERVLAELAIYKIIFDRVTAAGSDSVRSSRRKCYIIDSIKNKHELEIFQLVYAEILFFVGVFSSPEQRAQNLEALGMTSAEIYALIDRDSGEDLPHGQTVSETFPKADFFIRVENNSANEIKGKVERFISLLFEGAVATPHKHESAMYAAWSAASNSACLSRQVGAAIADNEGHILSVGWNDVPKFGGGLYLSDDKSDNRCWNSGEICYNDQEKSTLINVITKELIKSKIISENRETEITKTLRENKRLQGLIEFSRAVHAEMHAIINAGRISGANIVNSSLYCTTYPCHSCARHIVAAGIKAIYYIEPYRKSLAIRLHNDALTENSSDITKVRILAYEGVSPRRYLELFEMGSTKRKNSGTLIKIPKKERKPRHEKSLAALYTLEAMVTQSLEKQGLVKKSSEGDENENER
>NZ_CP025264.1|WP_004523114.1|3985887_3986004_-|hypothetical-protein
MLVGRIMPTPEAEAEAEAEAEAEADAPTRFAGLRYTGT
>NZ_CP025264.1|WP_004523116.1|3986395_3986944_+|hypothetical-protein
MEEAYARRALLLHLGSVLQILSRLEEAPDNQSIEALLAANGMLADVPLVEYVVQDMTVREFSARALRAFCLWPQLLLEDPLDCAALALPVRKHLFAGNDAGWKAYAATLREVAPGFDTARSYAAEPHEAEFDLADERDAETGDGPVERDDEADDDGRLRERAAASVESATPAGAPVRRESYE
>NZ_CP025264.1|WP_004523117.1|3987206_3988655_+|RNA-polymerase-sigma-factor-RpoD/SigA
MKVSARELRYEQGIDRLLELAGARDDTEYADVADEFASAPSSAFAHDLGEPDSLDHQASDESAGAGSFGDKPTRPAHGDTDVDTDWRDDDAPPSGSNDAAPVDTAASTDPLALFVRRMHAVPLLTHAQEIALAAEIEAGREQVLQALAEALDRLDLASLPADPALGRARAALQRARARGDEGARACARARTAAYAALAAHGWPSAEVDAVRRAMRRLPTSPEKSDAGAQRAFADGEARISAATARMAEANLRLVLSIARKYASRGLDLADLLQEGNLGLLRAIEKFEHRRGFKFSTYATWWIRQAISRAVADRARTIRVPVHVGDEARRVRKAADRIERRSGVSASLAELSEATGLPAERLRAVLTLPREPRSLNAPLGDDDQAEFGDIVEDTSTPSLFDALAHGQMCDVVTSLLKTMSAQEADILRRRFGIGGDEPWSYEQIAARAGVSREQVRRIEKRALQTLRVTAEACNAHDFLDVQP
>NZ_CP025264.1|WP_076847798.1|3988673_3990275_-|glutamate--cysteine-ligase
MTSRQTDLLQQRLAVLSTSPTREQLPDGLRGIEKESLRVTRDGMIAFTPHPRALGSALTHPSLTTDYSEALVELITPAERDAATTLERLDELHRYVYASLGDEMLWTDSMPGLLPADDEIPIADYGTSNIGRLKTVYRRGLAYRYGRTMQCIAGIHYNYSLSEEVWRRLHAEEGSTASIVDYQSERYLALIRNFRRTSWLLMYLFGASPALDAGFLRGRAHKLDTFDAATLYRPHATSLRMSDLGYSNTTAQAALQADYNTLSGYLDALSKAVSEPYPPYEAIGTHRDGEWIQINTNVLQIENEFYSTIRPKRVTYSGERPLHALASRGVQYIEVRCLDIDPFEPTGIALDTARFLDAYLLVCALDESAPLTCDAYRESNANFGRVTMEGRKPGLELTRDGAAVPMRAWADEIFAQIEAAGRVLDDIRGDDAHARAIAAQRAKLDDPELTSSARVLRAMRENGQSFLEFARAQSAAHAAYFHGRPLDEAATRDARALAERSLAEQAELEGKNAGSFDAFVAAYRAYTLNRFSV
>NZ_CP025264.1|WP_004535730.1|3990445_3991387_-|DNA-3-methyladenine-glycosylase-2-family-protein
MSAAVEPAAVRPDSVVLELPFKSPYDWPRVLRFFAGRAIPGVEAVGDGAYRRTVDHHGAIGTLTVRKHPRKRCLVALVEGDAARHADAAFAARLSTMFDLQADPAAIGAHLARDAWFAPLVGAAPGLRVPGAWSGFELIVRAIVGQQVSVKAATTIVGRLVERAGERLAPHAPGAIGWRFPEPAALAACDVSRIGMPGKRAAALQGVARAVASGDVPLDAYASDPAGVRAALLALPGIGPWTVEYVAMRAWRDADAWPATDLVLMQAIVARDPALDRPASQRLRADAWRPWRAYAAMHLWNEIADRAGSARGG
>NZ_CP025264.1|WP_004523120.1|3991383_3992478_-|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada
MKQPPYPTDDARWAALVARDVDADGAFCYAVKTTGVFCRPSCASRLPRRENVSFFADTGAARAAGYRPCKRCRPEGLPRELDIVNRACAVLDAHRQDRFTLAQLSDAVHVSPFHLQRLFKRVVGVSPRQYQAAQRGAALRDALQSGAAVTRAAVDAGFNSPSRLYESVPRELGMSPSAFRRKGAGLKIDYATADTRLGVVLVAATSKGICKIAFGDAAAPLVDELRTGFANAQIAESPERIAPFIAQVDAYLNGTRRRFELPLDLAATEFQQRVWDALRRIPYGETRSYTQIAEALGAPRAVRAVASACASNPVALAIPCHRVVQKGGSLAGYRWGLPRKAALLDAEAQRAAGESVESAVDHAA
>NZ_CP025264.1|WP_004197761.1|3992879_3993296_+|lactoylglutathione-lyase
MKFHIHEIDHVVLRAADLAAMTRFYCDVLGCHVEKEQRELGLVQLRAGRSLIDLLAVGAPIDRAGSGAPGKGRNMDHLCLRVEPFDAAALRTHLAAHGARPGDEARRYGADGYGPSLYLFDPEGNMVELKGPPEAVAP
>NZ_CP025264.1|WP_004197759.1|3993502_3994057_-|YaeQ-family-protein
MALKSTIYKAELQIADMDRHYYADHSLTVARHPSETDERMMVRIAAFALFAHERLEFCKGLSDTDEPDLWQKDLTGAIEVWIDVGQPDERRIAKASGRAGRVNVIAYGGRTSDIWWQGARGKVERLRNVQVTTLADGVAAALGGLAERTMRLQCTIQDGAAWLSSATHDPVAIEWTTLKAREDA
>NZ_CP025264.1|WP_004533530.1|3994272_3994617_-|hypothetical-protein
MKRTGLFLALTGGIVAFSVAQANGDVSLKPQQEIQLTKNAWGCLSKDNLDSVLNHERDGKAQAKQQYFDDYRCLSVPEGQRFRVVSVDKGDVQFVSAENSDQQGLWTDARFIKQ
>NZ_CP025264.1|WP_004524603.1|3995105_3995666_-|spermidine-N1-acetyltransferase
MQIQNEQHTLALRPLERQDLRFVHELNNDAKIMRYWFEEPYETFTELSQLYDQHVHDQRERRFVAFDSDGELVGLVELIELDYIHRRGEFQIIIAPNRQGRGFATRATRLAVEYAFKVLNLRKLYLIVDKSNVAAIRVYEKCGFKHEAELIEEFFGNGQYHNALRMCIFQRDYFAAQPGAELHARE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

185019 : 219324

Burkholderia_phage(76.09%)

tail,integrase,plate,head,portal,holin,capsid,terminase

attL 184910:184969|attR 221713:221778

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
184910:184969	attL	NA	NA	NA	NA
WP_004200089.1\|185019_186129_-\|integrase	site-specific integrase	A0A1S5NNJ1	Burkholderia_phage	6.5e-168	79.9
WP_080293685.1\|185996_186446_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004556611.1\|186455_187022_-	hypothetical protein	A0A089FGR9	Burkholderia_phage	2.0e-56	91.6
WP_004556610.1\|187018_189811_-	hypothetical protein	K4NXL6	Burkholderia_phage	0.0e+00	99.4
WP_004524471.1\|189822_190077_-	hypothetical protein	K4NZY7	Burkholderia_phage	4.5e-40	100.0
WP_004556609.1\|190073_190442_-	hypothetical protein	A4JWR0	Burkholderia_virus	6.1e-62	100.0
WP_004524469.1\|190435_190642_-	hypothetical protein	K4NZT3	Burkholderia_phage	2.7e-35	100.0
WP_004524468.1\|190810_191050_-	hypothetical protein	K4PAZ5	Burkholderia_phage	2.0e-34	98.7
WP_009935901.1\|191053_191263_-	phage-encoded membrane protein	K4NXL1	Burkholderia_phage	4.5e-30	100.0
WP_004524466.1\|191291_191489_-	hypothetical protein	K4NZY3	Burkholderia_phage	1.6e-29	100.0
WP_004549898.1\|191494_191713_-	hypothetical protein	K4NXB1	Burkholderia_phage	1.1e-34	100.0
WP_004524465.1\|191728_192274_-	Bro-N domain-containing protein	K4NZS9	Burkholderia_phage	7.8e-98	100.0
WP_004549899.1\|192359_192608_-	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	3.0e-41	100.0
WP_004549900.1\|192595_192892_-	phage DNA-binding protein	E5E3P2	Burkholderia_phage	5.4e-37	84.3
WP_011204750.1\|192895_193090_-	hypothetical protein	K4NZX7	Burkholderia_phage	1.6e-26	96.9
WP_076852522.1\|193170_193674_+	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	5.4e-61	79.4
WP_004524460.1\|193726_194476_+	phage-encoded membrane protein	E5E3P5	Burkholderia_phage	4.7e-53	43.1
WP_004524459.1\|194518_195019_+	hypothetical protein	NA	NA	NA	NA
WP_004524458.1\|195026_196124_-	phage late control D family protein	K4PAY4	Burkholderia_phage	1.1e-199	99.2
WP_004524457.1\|196123_196549_-\|tail	phage tail protein	K4NXK5	Burkholderia_phage	1.2e-72	100.0
WP_076856907.1\|196566_199533_-	hypothetical protein	A4JWX4	Burkholderia_virus	0.0e+00	98.8
WP_004552648.1\|199529_199643_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-14	100.0
WP_004531064.1\|199651_199996_-\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	1.0e-55	100.0
WP_004524455.1\|200053_200563_-\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	4.9e-94	100.0
WP_004524454.1\|200578_201751_-\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	4.1e-221	99.0
WP_004524453.1\|201806_202478_-\|tail	tail assembly chaperone	A4JWS8	Burkholderia_virus	1.5e-114	98.2
WP_076856906.1\|202494_204867_-\|tail	phage tail protein	Q45YG3	Burkholderia_virus	0.0e+00	99.1
WP_004524451.1\|204868_205423_-\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	1.3e-97	97.3
WP_004524450.1\|205415_206321_-\|plate	baseplate assembly protein	A4JWT1	Burkholderia_virus	3.6e-164	100.0
WP_004556607.1\|206317_206680_-\|plate	phage baseplate assembly protein	K4PAX6	Burkholderia_phage	5.0e-61	99.2
WP_004556606.1\|206676_207357_-\|plate	phage baseplate assembly protein V	A4JWT3	Burkholderia_virus	4.3e-122	98.7
WP_038719263.1\|207530_208301_+	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	2.2e-138	96.8
WP_139341884.1\|208435_209146_-	hypothetical protein	NA	NA	NA	NA
WP_004524445.1\|209308_209776_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	7.9e-75	96.7
WP_004524444.1\|209772_210189_-\|tail	phage tail protein	A4JWT7	Burkholderia_virus	5.6e-72	99.3
WP_004524442.1\|210293_210734_-	phage-encoded lipoprotein	K4NXJ2	Burkholderia_phage	8.0e-69	97.9
WP_004524441.1\|210730_211543_-	DUF3380 domain-containing protein	A4JWZ0	Burkholderia_virus	2.2e-149	99.6
WP_004524440.1\|211539_211812_-\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_004524439.1\|211813_212158_-	membrane protein	K4NZQ3	Burkholderia_phage	2.9e-50	100.0
WP_004524438.1\|212172_212379_-\|tail	tail protein	K4PAW7	Burkholderia_phage	2.4e-31	100.0
WP_004524437.1\|212375_212627_-	hypothetical protein	K4NXI9	Burkholderia_phage	7.6e-40	100.0
WP_004524436.1\|212626_213106_-\|head	head completion/stabilization protein	A4JWU5	Burkholderia_virus	7.6e-81	99.4
WP_004524435.1\|213205_213895_-\|terminase	terminase endonuclease subunit	K4NX86	Burkholderia_phage	1.6e-116	99.6
WP_004524434.1\|213891_214905_-\|capsid	phage major capsid protein, P2 family	K4NZP8	Burkholderia_phage	3.0e-188	98.8
WP_004524433.1\|214938_215748_-\|capsid	GPO family capsid scaffolding protein	K4PAW2	Burkholderia_phage	3.3e-145	98.5
WP_004524432.1\|215891_217661_+\|terminase	terminase ATPase subunit family protein	K4NXI4	Burkholderia_phage	0.0e+00	99.7
WP_004556602.1\|217657_218713_+\|portal	phage portal protein	A4JWV0	Burkholderia_virus	5.2e-207	100.0
WP_004524431.1\|218819_219092_+	BrnT family toxin	K4NX81	Burkholderia_phage	1.0e-45	100.0
WP_004524430.1\|219051_219324_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	6.3e-48	100.0
221713:221778	attR	NA	NA	NA	NA

DBSCAN-SWA_2

446906 : 463090

Burkholderia_phage(44.44%)

plate,portal,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076856982.1\|446906_447440_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.0e-21	51.0
WP_004199888.1\|447661_448159_+\|terminase	terminase	K4NXI4	Burkholderia_phage	2.6e-55	100.0
WP_004557286.1\|448155_449211_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	1.8e-204	98.9
WP_004202809.1\|449254_449611_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_075019229.1\|449613_449937_-	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	9.1e-54	97.2
WP_004552667.1\|450577_451834_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	3.6e-21	26.2
WP_031313497.1\|451836_452454_+	DUF4276 family protein	NA	NA	NA	NA
WP_004521944.1\|453225_453552_+\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	3.6e-50	96.2
WP_076857191.1\|453853_454456_+	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	9.6e-81	87.9
WP_111952238.1\|454852_455443_+	hypothetical protein	NA	NA	NA	NA
WP_004521947.1\|455546_455912_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	3.9e-53	90.1
WP_004521948.1\|456014_456800_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004521949.1\|456796_458143_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521950.1\|458251_458866_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004531875.1\|459240_459912_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521952.1\|459948_460467_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004521953.1\|460483_461974_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004527837.1\|462046_462550_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011205263.1\|462577_463090_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

791186 : 800432

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004194034.1\|791186_793139_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2
WP_004522147.1\|793405_794536_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.6
WP_004522148.1\|794569_796576_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	4.8e-52	34.6
WP_004522149.1\|796760_797576_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	1.5e-36	33.3
WP_004532195.1\|797640_798324_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194373.1\|798320_798848_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004522151.1\|798884_800432_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2

DBSCAN-SWA_4

1135539 : 1144373

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522358.1\|1135539_1136940_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-79	38.5
WP_009921652.1\|1136971_1137895_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004190173.1\|1137953_1138946_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_004522360.1\|1139017_1139335_+	competence protein ComE	NA	NA	NA	NA
WP_076856818.1\|1139347_1139656_+	hypothetical protein	NA	NA	NA	NA
WP_004532363.1\|1139667_1140570_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_076891876.1\|1140796_1142137_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004522362.1\|1142264_1143188_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.4e-43	36.2
WP_004522363.1\|1143530_1144373_-	alpha/beta hydrolase	A7XCB7	Tanapox_virus	1.0e-16	26.6

DBSCAN-SWA_5

1660331 : 1664811

Burkholderia_virus(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196630.1\|1660331_1660595_+	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5
WP_071897863.1\|1660578_1660764_+	hypothetical protein	Q8W6S4	Burkholderia_virus	4.4e-21	85.2
WP_076804729.1\|1660784_1661096_-	hypothetical protein	A4PE26	Ralstonia_virus	4.5e-26	60.2
WP_038763587.1\|1661516_1662119_-	hypothetical protein	NA	NA	NA	NA
WP_004521248.1\|1662460_1662967_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	6.7e-19	39.4
WP_004521249.1\|1662963_1663389_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.1e-14	47.0
WP_004557051.1\|1663669_1664065_-	hypothetical protein	NA	NA	NA	NA
WP_004531416.1\|1664314_1664542_+	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_004527234.1\|1664577_1664811_-	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6

DBSCAN-SWA_6

2553986 : 2560780

Burkholderia_virus(33.33%)

integrase

attL 2545918:2545933|attR 2557573:2557588

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2545918:2545933	attL	NA	NA	NA	NA
WP_004521807.1\|2553986_2554412_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.1e-14	47.0
WP_004556864.1\|2554408_2554915_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.5e-18	39.4
WP_004521808.1\|2554907_2555381_+	hypothetical protein	NA	NA	NA	NA
WP_076853127.1\|2555352_2555859_+	hypothetical protein	NA	NA	NA	NA
WP_004521809.1\|2555867_2556581_+	hypothetical protein	A4PE26	Ralstonia_virus	1.5e-32	43.3
WP_080366950.1\|2556601_2556808_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.1e-15	86.7
WP_076804902.1\|2556758_2557202_+\|integrase	tyrosine-type recombinase/integrase	B9UDL9	Salmonella_phage	1.3e-18	42.6
WP_004521810.1\|2557495_2558326_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
2557573:2557588	attR	NA	NA	NA	NA
WP_004521811.1\|2558873_2559782_+	aldose 1-epimerase	NA	NA	NA	NA
WP_004521812.1\|2560078_2560780_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	7.6e-13	44.8

DBSCAN-SWA_7

3127027 : 3138006

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196461.1\|3127027_3129328_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1
WP_004194131.1\|3129324_3129639_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196460.1\|3130171_3130375_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004556764.1\|3130504_3132136_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_004522610.1\|3132148_3132331_+	hypothetical protein	NA	NA	NA	NA
WP_004189552.1\|3132303_3133563_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004522611.1\|3133830_3134409_+	pseudouridine synthase	NA	NA	NA	NA
WP_071810810.1\|3134671_3134890_+	hypothetical protein	NA	NA	NA	NA
WP_004185496.1\|3135081_3135591_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_004197486.1\|3135891_3138006_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP025265

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025265_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025265_1

980224-980449

Orphan

Consensus_repeat	Method
GANCGAACNCCGNACCGA	CRT

5 spacers

The CRISPR arrays of NZ_CP025265_1

>merge|NZ_CP025265|1|980224-980449|CRT
CCGCGAACGCCGAACCGAACGCCGAACCGAACGCCGGACCGAACGCCGAACCGAACGCCGAACCGAACGCCGAACCGAACGCCGGACCGAACGCCGGACCGAACGCCGGACCGAACGCCGGACCGAACGCCGGACCGAACGCCGAACCGAACACCGAACCGAACACCGGACCGAACACCGGACCGAACACCGGACCGAACACCGGACCGAGCGACCACCCGGCCGG

>NZ_CP025265|1|1|980224-980449|CRT
CCGCGAACGCCGAACCGA	ACGCCGAACCGAACGCCG
GACCGAACGCCGAACCGA	ACGCCGAACCGAACGCCGAACCGAACGCCG
GACCGAACGCCGGACCGA	ACGCCGGACCGAACGCCG
GACCGAACGCCGGACCGA	ACGCCGAACCGAACACCGAACCGAACACCG
GACCGAACACCGGACCGA	ACACCGGACCGAACACCGGACC
GAGCGACCACCCGGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025265.1\|WP_004266338.1\|994956_995850_+\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|367137
NZ_CP025265.1\|WP_004184782.1\|977055_977676_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381738
NZ_CP025265.1\|WP_076857118.1\|987213_987768_+\|acetyltransferase	unknown	unknown	unknown
NZ_CP025265.1\|WP_004523926.1\|980534_986702_-\|alpha-2-macroglobulin	unknown	unknown	gnl\|CDD\|225248
NZ_CP025265.1\|WP_004523929.1\|988860_989331_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|372719
NZ_CP025265.1\|WP_004523919.1\|970336_970615_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004551538.1\|971453_972104_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP025265.1\|WP_071898044.1\|974535_974913_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004523930.1\|991528_992449_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226607
NZ_CP025265.1\|WP_004523922.1\|972215_973598_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_038719574.1\|989327_991532_+\|class-I-tRNA-ligase-family-protein	unknown	unknown	gnl\|CDD\|223569
NZ_CP025265.1\|WP_004523932.1\|993350_994964_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_023358702.1\|992451_993354_+\|P-aminobenzoate-N-oxygenase-AurF-family-protein	unknown	unknown	gnl\|CDD\|378680
NZ_CP025265.1\|WP_004548368.1\|975277_976693_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP025265.1\|WP_004523920.1\|970674_971289_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP025265.1\|WP_038774468.1\|974017_974497_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_009947306.1\|973620_973860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004553310.1\|995813_996521_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|149273
NZ_CP025265.1\|WP_004523928.1\|988136_988721_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004528095.1\|976703_977072_+\|response-regulator	unknown	unknown	gnl\|CDD\|381124

Protein	Function_ID	Function_description	E-value
NZ_CP025265.1\|WP_004184782.1\|977055_977676_+\|hypothetical-protein	gnl\|CDD\|381738	cd17910, CheC_ClassII, chemotaxis protein CheC, Class II. This family contains class II CheC proteins found in proteobacteria, which diverge from class I CheCs in sequence conservation and lack critical well-conserved residues for CheD binding. These proteins are likely to be dedicated phosphatases. The class II cheC genes are not found in chemotaxis operons, but in operons containing more archetypical two-component signaling components, non-signaling operons, or as orphans. Thus, class II CheCs appear to be involved in non-chemotactic two component systems. Class II CheCs lack the first of the two phosphatase active sites of class I CheCs, and retain the second active site of class I CheCs.	1.4118e-51
NZ_CP025265.1\|WP_004523926.1\|980534_986702_-\|alpha-2-macroglobulin	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	2.65804e-89
NZ_CP025265.1\|WP_004523929.1\|988860_989331_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	2.86832e-19
NZ_CP025265.1\|WP_004551538.1\|971453_972104_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	4.54276e-12
NZ_CP025265.1\|WP_004523920.1\|970674_971289_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.66895e-22
NZ_CP025265.1\|WP_023358702.1\|992451_993354_+\|P-aminobenzoate-N-oxygenase-AurF-family-protein	gnl\|CDD\|378680	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF. This family is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalyzing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes.	1.59212e-20
NZ_CP025265.1\|WP_038719574.1\|989327_991532_+\|class-I-tRNA-ligase-family-protein	gnl\|CDD\|223569	COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	7.6843e-155
NZ_CP025265.1\|WP_004548368.1\|975277_976693_+\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.43034e-51
NZ_CP025265.1\|WP_004523930.1\|991528_992449_+\|hypothetical-protein	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.46532e-13
NZ_CP025265.1\|WP_004266338.1\|994956_995850_+\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|367137	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. This family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent taurine dioxygenase. This enzyme catalyzes the oxygenolytic release of sulfite from taurine. TfdA from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.	2.23041e-70
NZ_CP025265.1\|WP_004553310.1\|995813_996521_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|149273	pfam08123, DOT1, Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.	0.00013481
NZ_CP025265.1\|WP_004528095.1\|976703_977072_+\|response-regulator	gnl\|CDD\|381124	cd17593, REC_CheC-like, phosphoacceptor receiver (REC) domain of uncharacterized response regulators containing a CheC domain. This subfamily is composed of uncharacterized proteins containing an N-terminal REC domain and a C-terminal CheC domain that may function as the output/effector domain of a response regulator. CheC is a CheY-P phosphatase, affecting the level of phosphorylated CheY which controls the sense of flagella rotation and determine swimming behavior of chemotactic bacteria. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	8.01006e-55

>NZ_CP025265.1|WP_004184782.1|977055_977676_+|hypothetical-protein
MASMNDIALTEEHRDALQEISNIGMGRAGAALAKLLGAFVTLSVPDIKLVSARELLDELQRCERRADMPRPVRQSFQSDICGEALVLFGSDGRRELKELMGYDDATDDIEDEALSDIASLLVGACVHSVFEQLDRRLTFLRPTFVPPGSLASALGDERLGRWDVALLLEVHFTLEHGGFVAKLVMLLPDAAIHKMKAALEQFLDAL
>NZ_CP025265.1|WP_004528095.1|976703_977072_+|response-regulator
MALPVLVVDDSTLARKLLIKSLPSDWDVEITQASNGAEALLHYRAGKGAVIFLDLTMPVMDGFQVLEHIREEGLDAFVIVVSADIQEGAVDRVKASGAIGFVAKPVSTERIVPILKGYGLYE
>NZ_CP025265.1|WP_004548368.1|975277_976693_+|PAS-domain-containing-protein
MSESTVMQMSAAIVEQLNCGVFSVDHDMRILAWNGFMQYHTGRSRDDAIGQDLFALFPELPARWLRKKLESVFVLGVAMYTSWEHRPYLFRFDHSRPITGTIDAMRQNCSFVPLDDGRGGVAAVGVTIVDATDICIAHEVLGNREKRLTDALAELTARHAELSDLNRQLAHAHQQLLQSEKLAAIGQLAAGIAHEINNPVGFVLSNVNTLGGYLGALIAHAHAVERLVAERQPQLAPALAELARGADLDYLCEDAPALVDESKEGLARVRKIVVDLRDFSRVDSVHQWEWVDIHHCIESTLNIVRNEVKYAADLVREYASLPMVRCIPSQVNQVVLNLVVNAAQSYSSMRADGGHGDVPRGTITIRTGVDAGDCPRIWFEVIDAGCGIAPENLKRIFDPFFTTKPVGKGTGLGLSVAYGIVSAHGGEIAVSSAFGAGTTFRVTLPVERTGEPQPEAAAVSHSTPVASGIAS
>NZ_CP025265.1|WP_071898044.1|974535_974913_+|hypothetical-protein
MALGRRGGTADGRRFDARIRKGRRRRRGVGRCAAAQCSAARRAACGGSASPAARSTRRRAGASQPAGRPKRPFVFVQYGDGGRRDGADPAGMERRAARDRHDRTAGRIGVGRDAIVAARREISAV
>NZ_CP025265.1|WP_038774468.1|974017_974497_+|hypothetical-protein
MKRSRSRFRASFTVAVALGVPSGFAHAQSLPGIPDPAAVGLTPGTGQNGAPTVSACFYNYRTKVIAGFPTQIASGWIVTNQRNDPACIPPGGLPGPNWQEMTYFRDMPVGASMSACWSFSWPSNWQPVGYTSDPSKCGYYPGGQIPGAQPNVVFLKRAQ
>NZ_CP025265.1|WP_009947306.1|973620_973860_-|hypothetical-protein
MHYRQAIFGDRIPCVHDAPRNFTKQNTPENRAKRLRPSMRGSTTPSAHATRHRPRFAPHRSRARIVKNMAAWRHAAAPT
>NZ_CP025265.1|WP_004523922.1|972215_973598_-|hypothetical-protein
MAIHHRPSISGDISKQHSIDQATMFESFNKDVVDAFARNKRRLTKNAASRQVRALLDEVGASAFKLLPHPFLFPADEFEMLARRARALLRAQNKIVRHLCRHRPRADLLAQCSLNPALARYVDWDELEAGRRRVARVDILPLPDGYAVCELNFSAAVGGAELFDCHRRFMQASGWPACERGGSPYANLRALYEDTLRSMEIDRIVLLDWSSHAARGYATPELARRYLAGIANGMPVDVHTELTYPSKWLGNGRGKGILIHRNFVYDDMTVNADRFDAIHRSGATFSNGLEAELLMSKAWLALLCDARFHPLLDEDEIAAIRNHVPHTFRLDEGTFAEALAHKDEWVFKLNVSYGGVDVLIGKDHPADALADRLRRQGIANWICQAFRAVQTIRHPFDDTFVAAEHKPVLGMYLHRDDASGMALRSNRFSSVVNAGSGAGVHWAAVVTEAEKAALLAAMDG
>NZ_CP025265.1|WP_004551538.1|971453_972104_-|2OG-Fe(II)-oxygenase
METAELHFRCNEGGMADYAAQLREVGTVMLPAYVAFDAHELARIDALQARLPEEPVTAGDAGDTHDIYVRRIMVDRAGERPQLVNLPHSETILNLLGDARRTRFFGDMFGTRAEYFIRRCQINRMLKDSFIGMHLDAASNPDYEFSVVIQLGRAFDGGEFVVHPQGRPPNVFAPAYGTVIVTSCAHRHEVRTVRANERTSLVYFYSRHNGANRRAA
>NZ_CP025265.1|WP_004523920.1|970674_971289_+|GNAT-family-N-acetyltransferase
MQQQVDGGADSLAPVIETARLILSGPRLEDFDGSRALWADPDVTRLIRDEPFTSEECWLRLLRYVGHWRLLGFGYWMAREKDTGRFIGEVGFADAKRDIVPPLDDAPELGGALAPAAWGQGIAREALHAVLEWADANLTARRTVCLIGPKNRFSMRLAAEFGYREVAVAEYKGEPIRVFERPAAGPRAGETRPPADAAERGGRA
>NZ_CP025265.1|WP_004523919.1|970336_970615_+|hypothetical-protein
MRGACALAASDVSAAYAVPAFAPRFLSAWHGLQRREGAFQSLHIASRRFIPRCIAIAGARGRSFPAVRRDRPPPCATPGRALAGSRGIAVES
>NZ_CP025265.1|WP_004523926.1|980534_986702_-|alpha-2-macroglobulin
MKHDDKHNKPGHPNPSILRLLARVGAAAALGAAAALSLHADAARTVNVSPQGTVAEVRQAVVKFDEAMVAFGSASTPDPARLACADPAAARGHGRWLDEKTWAYDFENDLPPGVRCTVALNDTLRSAAGHAVTGPRRFAFQTGGPFPVAVRPGAREIEERQVFVVKLNGPADERSALASIWCEAAGIGNRIPVAPADAPTRAALLDHFHWKKDAARVLTLACAQALPAGAKMQLVYGRGVASPSGIANDTERRYDFTVRAPFAASFSCERENAKAPCTPLRPLTLSFNAPVARRAAGEIRLRGPHGAVEPFFKPDDRAEEVTSVQFAAPLPAQAALTIELPPALRDVTGRTLSNADLFPLATRTAPMPPLAKFSSGTFGIVERFAEPDSPALVPVTLRNVEADLRIAGLNAGGAQFSNLKVENDSEIRRWMQLVERFDGRAMSVESIDKLRPGLLARGQHPVYVPLAAGERAPKPQHRQIDIRSLSLLAGEPGVRTLTLPKADPKALRPFEIVGVPIDKPGFHVLELASPALGRSLLAKPAKMYVRTAVLVTNLGVHLKLGRENSVVWVTTLDKGKPVPNAQVRVSDCNGDEIAAGRTNAQGLVTIDAPLEPKRACDSSNGDGDYFVSARVDDPKTGPDMAFVRSSWNRGIESWRFNVPTDMSDTPTVRAHTVFDRTLVRAGETVSMKHFVREETLRGLAFPPRYPSRATIRHLGSGQTYRVPLAWAADHTADTRFALPAAAKLGEYSVELEDGPEDAPSASYYGGSFRVEAFRLPVFKGSIGVRDAKASPLVGAKDAPLAVQIDYVSGGGASNLPVQVSALVKRAEPPFAERYPDFGFEPYRPQTQDATADDEDTQDGENASRDTDPDATKLIADKIALTLDRTGSGALTLKGLPAVDAPKRVALEATFADPNGEVQTIRGDAMLWPAAVVAGIQAGHWVSVGQRVPVQALVVDLQGRPRASAAVEIKGVARVTTSSRKRMVGGFYAYDNQSDTRELGVLCSGKTDAQGRLACDATLSQAGNVQLIAVAKDGDGRASNASTSVWVTREDDLWFGGENTDRIDVIPEKASYEPGDTARFQVRMPFRHATALVAVERGGVMQTRVVELNGKNPTVDLKVGDTWGPNVYVSVLALRGRLRDVPWYSFFTWGWKAPLEWARAFWREGRHYEAPSALVDLSKPAFRYGLGEIKVGTGAHRLGVAVTTDAARYPVRGTAHARVKVTLPDGKPAPAGTQIALAAVDEALLELMPNRSWDLLDAMLQRRAYGVETATAQMEIVGRRHFGRKAVPAGGGGGMAPTRELFDTLLLWNPRVTLDANGSASVDVPLNDALTRFRIVAIAATGAERFGTGSATIRSTQDLQLISGLPPLVREGDAFRAQVTVRNTTERKMDVIVTPRVPGIDAAPRKISLAPDSAQEIAWDVTVPETALDAAGALDWRIEAAEQGGKRAADALALAQKVVPALPVTVQQATLAQVDGTLSVPVAPPAGAMPDARGAPRGGIAVSLQSTLADGLPGVRRWFERYPYRCLEQQASRAIGLRDAAQWQALAARMPVYLDRDGLASYFPPSSDDAHSGSPPLSAYLLVLADEASRADARFALPEDVRTQLEAGLARFVEGRIERDAWAPRQDRDLRKLAAIEALSRYGAAQGRMLGSIEIAPNQWPTSAVLDYHAILTRVKDIARRDEKRAQAEQILRARLAYQGTQLVFSTARGDDLWWLMTSNETNAARLALAFAGEAGWKDEMPRVAAGLLALQKNGAWQTTTANALGLLALERFSRTYERAPVAGATKIALGGDTRSIAWSQPAGAGGATVATGAAGATATAGAALASGASASASAAAKPAATQSRTPPPSSGTPPPSAATRAAAAHSVTLPWPRGARTPGTLSIVHEGSGRPWATIESLAAVPVRAPFAAGYRIAKTVTPVSPAVSGALTRGDVLRVRLDIDAQSDMTWVVVNDPIPAGATILGSGLGRDSEAATQGEKSPDGAWPAFVERDFDGYRAYYDYLPKGKLTVEYTVRVNNVGTFGLPPTRVEALYAPSVYGLWPNPPMTVRPAVAGKP
>NZ_CP025265.1|WP_076857118.1|987213_987768_+|acetyltransferase
MTETIVVRMAHSDDYPNILALQKANQIGNLTEAERKNGFLSTEIPEERIGALASDTGIVVAYDQAEFAGFFCISRLASWRGNAIIDALVASFEQSEEYASHRISETMCLFGPMCLNQVARGKGILEKMIGLAIESAKTQFENAISFIAVDNARSVNAVAKLGYRPVRRFTSGEREYHALIADFA
>NZ_CP025265.1|WP_004523928.1|988136_988721_+|hypothetical-protein
MDTTTQDGNRPPFDAPRGGRGDGDKNDDTRLPDCNERARRRAGVAAKRTRRALNGAASRTGLDAECRVRPKNARRRTSVSKAARAVHWRARRRAIVPIHAAQPKGGRGGARASAHPPMRPMRTRAQIPRADREPGLSGLSGSSSSSSSSGASGASGVANFDPIFFFYHRLRSHGSPQQASPTQARRTKRDRAAA
>NZ_CP025265.1|WP_004523929.1|988860_989331_+|gamma-glutamylcyclotransferase
MSQVCYFAYGSNMSAARLSERLSRFGEALIERRPGIVEGYRLTFNKVSSRQDWVGFANIEAAADCRVEGTLNAMSARALDALDSIELVPLHYRRAGVLVRDGATGRLTFAVTYVANPAMVRPNLRPTRDYLDHLLAAADVLPRAYLDHVRAVECWT
>NZ_CP025265.1|WP_038719574.1|989327_991532_+|class-I-tRNA-ligase-family-protein
MSAPHADGARHAPPYRPQALEPRWQSAWRDARLFDADPQPGRPKWFIVELPPFATGQLHMGHARNYVLADADARFRRMQGYNVLYTTGFDTFGLPTELAAREAGCAPERLARECSEAMAAQFVRLGLGHDSRRITQYHVPAYYRWVQWVFLRLFEAGHCFRRDAPVAWCPQCEVTLAASLVDDGRCWRCKRVVSTVVQPQWFVRESTFADEMLDGLDRLAGWPDEVKKIHRDWIGRREGLRLRLPVRGRAHGLALHLDDAGWLPGVRFVAVGRRHPLAAAALRDGVQPGETILLADVAQAAGAAGAVELPIIVEDAPGDAARAGRPDAVAADRALAERHALAAPSPGAGGAPAVCDLDAMLAAGQAERVVGYRLQDWNIARNRYWGPPVPIVHCAACGPVAVPEHALPVRLPEDVDLSRPGNPLEHHARFRDVRCPRCGASARRDAQTLEAYSSPWWYHWMCKRVDVDDPFNRDDANAWLPVDLMIGGADQVRTCFFHVRMIARALRGMGIADVDEPVTTLLALGMVKQDDRKMSKSAGNAVSLASIIERYGADALRLAIIGAAAPENDVNWSDDLVRRQRAFVARLWAFVHRVAETEAGIAAAHDAGDPPAAGRPDALQRRMQDWLATGGRRIAADFRRHDYHLALKNLAFLFERLQAFDAAMRRRAPPRAEDVAILAGATRQLVLFLGPFAPHVAEELWQALGGAGLVAGAAWPGADVGRSSAATAKREAFA
>NZ_CP025265.1|WP_004523930.1|991528_992449_+|hypothetical-protein
MTTVTFSGPIFDLVDGVLRDAPEYRGFRAGAQSRAEFAAFLERVRTQLVGRGVPANDVHFAKRFPVSIDAAVEHAFAELAPMGLAWPAGFPAVCARAAARIGRGFDHQGLGTYIYPEEGRLLLAIALAFQPRNAVFLGSYYGYWAAWALPAIVACGARAVLVDPDPRVAEVARRSLARLYPGARVEIVCDTGEHYLAGGGGPFDLVVLDAELPRDHVDPTRRGKGVYAHLLRAALPRLAERSLLVCHNILFRDHSGCAFFDDVIARNREELAPFLALVAREYDCFVECPTTEGVGVGMRTAPRGRA
>NZ_CP025265.1|WP_023358702.1|992451_993354_+|P-aminobenzoate-N-oxygenase-AurF-family-protein
MDAYRSPFDDWHQAASVRSMPADAWLAGGAGAWIAPQAGGVLAGLPARDARRERAAGGLLIAHLSFTVALENTLISPVARDIAARALHADYDDGVVADALRVQCDEAYHALLAQELMTRVRAATGADKPRRTPGFLRHVERLAATLPGVDAPLLRFCAAVVAETLITHTLRDDWRDEGLQPDVRTFLRRHYLDEARHSAYFSRLLTLLWPQWPAGVRDALRPLWSGLIDAFLFADARIAAEALAAAGLTACEIDCAMSACGAPDAMQRRRAQSARQTLHALRAAGALEAGESAAIALGNA
>NZ_CP025265.1|WP_004523932.1|993350_994964_+|hypothetical-protein
MSAAGIRAFPGFAFGGGDRALAFVGGGLILDSGEAENTFAFRCQDRFLVYTGLLGLPSVLLVLDDAHSRHYARLLATLDERLQGLAAVHRVAAPRLPPPVDVRCDLRTLSLSASASFDRAAHALARDGARIGFVANQVAPSTARMLGELADLLRGRGVEVDFDRAGCERVAALAHAWHNKARFLAFMREAAIRGGPPLAPSAVLAPEAFLRMREWAELAARFAAECDRRAPSSGLFLKSSQDSSGNVSAILSSANFAERAPAFAAEVRRWLLADGFDDPAHVRELRKECEQPPSMEPVSLSDATLAELRRRQARRRTGLPLIVQPALQPPADACGSPASVGASFCIEDDGRHRVVAVAAQLYRDAQRRRFLGLHVDDGLLDDRRVREWVARCGALVDALAARGYRGPVNFDGCMGADGRYWFVGDCNPRLTAVYVPLAVRTWLRAAGIDVRSVSSFGYRGEFATPAIRACVDTWSRAGLIFSRERPRGFVVLPNLACRDGHDVLAINLGVAQATAGLARMRELVAGAVPAHLGAIHV
>NZ_CP025265.1|WP_004266338.1|994956_995850_+|TauD/TfdA-family-dioxygenase
MSDGPALGIRPLSAALGARIDGIDARAELDADTVRAIRAAWLRFGLLVFRGQALDPPRLVAFTRRFGEPVVYTRACNACDGQPEVLVLSNVVKDGKPIGAALSGRYWHTDGHYLACPPAGTLLFGAEIPAVGGDTHFVNMTAAYRALPAWVRTQIDGRTFVMDRVQTLPFHYPQRPAPPPDQKQAWPDMPQPVVRTHPETGENALYIGGVVPWRIVGMEQRLSDALMAHLHAIAFDEARFGYRHRWRAGDLLMWDNRCLAHRATDYDMVRHRRTMYRTTIAGDRPRYVRGAAQPGVS
>NZ_CP025265.1|WP_004553310.1|995813_996521_-|class-I-SAM-dependent-methyltransferase
MLENPVGNLAAEARRLASAWRRGGPGLAARVALDRLCDAALEWRLRIRSGGLVPIESLVAEWHGCHDYYPSSIRAFSRVLRDLRITPDDVFVDYGSGMGRAIVIAARFPFRALIGVETSDRLHRAAQANVGRALSDADRRRIRLLHCDARRFRLPGSASVLYFYNPFHGDILRAVFADIERSLRQHPRRLRIVFNNPAHFRAIERDYGWLRRSREYAFEYPIAVYETPGCAAPRT

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Crispr_ID: NZ_CP025265_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025265_2

1289536-1289700

Orphan

Consensus_repeat	Method
GCGAGCGCGGCGAGCGCGGCCGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP025265_2

>merge|NZ_CP025265|2|1289536-1289700|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGACAGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCGGCGAGCGCGGCCGCGCGATGGGCGCCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCGGCGAGCACGGCCGCG

>NZ_CP025265|2|1|1289536-1289700|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGAC	AGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCG
GCGAGCGCGGCCGCGCGATGGGCG	CCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCG
GCGAGCACGGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025265.1\|WP_004524130.1\|1299587_1299860_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NZ_CP025265.1\|WP_004524113.1\|1281847_1282834_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP025265.1\|WP_004199294.1\|1280436_1280958_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123
NZ_CP025265.1\|WP_004198472.1\|1298699_1298948_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_043943959.1\|1292133_1293183_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP025265.1\|WP_076857048.1\|1285595_1288061_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP025265.1\|WP_004198480.1\|1283229_1283457_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004543576.1\|1293814_1294555_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP025265.1\|WP_076802513.1\|1283453_1283672_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004524112.1\|1280954_1281779_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227949
NZ_CP025265.1\|WP_154304653.1\|1293271_1293700_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004524118.1\|1288279_1289260_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321
NZ_CP025265.1\|WP_004524120.1\|1290334_1292137_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP025265.1\|WP_004524126.1\|1296803_1298267_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP025265.1\|WP_004524124.1\|1295302_1296562_-\|monooxygenase	unknown	unknown	gnl\|CDD\|173852
NZ_CP025265.1\|WP_004524116.1\|1283730_1284240_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NZ_CP025265.1\|WP_004524117.1\|1284236_1285241_+\|FecR-family-protein	unknown	unknown	gnl\|CDD\|236622
NZ_CP025265.1\|WP_004524129.1\|1299394_1299595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004524114.1\|1282873_1283233_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226765
NZ_CP025265.1\|WP_004554968.1\|1294888_1295140_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP025265.1\|WP_004524113.1\|1281847_1282834_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	5.34026e-28
NZ_CP025265.1\|WP_004199294.1\|1280436_1280958_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	2.21088e-40
NZ_CP025265.1\|WP_043943959.1\|1292133_1293183_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	7.59153e-122
NZ_CP025265.1\|WP_076857048.1\|1285595_1288061_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	8.16317e-86
NZ_CP025265.1\|WP_004543576.1\|1293814_1294555_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	2.26487e-14
NZ_CP025265.1\|WP_004524126.1\|1296803_1298267_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.24401e-36
NZ_CP025265.1\|WP_004524112.1\|1280954_1281779_+\|anti-sigma-factor	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	4.02383e-19
NZ_CP025265.1\|WP_004524130.1\|1299587_1299860_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	9.38719e-09
NZ_CP025265.1\|WP_004524118.1\|1288279_1289260_-\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	3.78293e-52
NZ_CP025265.1\|WP_004524120.1\|1290334_1292137_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.05361e-176
NZ_CP025265.1\|WP_004524124.1\|1295302_1296562_-\|monooxygenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	3.81867e-137
NZ_CP025265.1\|WP_004524116.1\|1283730_1284240_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	7.12237e-71
NZ_CP025265.1\|WP_004524117.1\|1284236_1285241_+\|FecR-family-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	2.1512e-74
NZ_CP025265.1\|WP_004524114.1\|1282873_1283233_+\|hypothetical-protein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	3.3854e-30

>NZ_CP025265.1|WP_004524118.1|1288279_1289260_-|ABC-transporter-permease
MRDATDRLSRFAALGALAAVLAFFAVAAPGFATLANVERVLVNNFALLAIAALGMTLALSIGAIDLSLGTAIDVASLAFVCALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHGVWLGVAAPLWIVAALAGALHVALERSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAPQAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRARDAGQSG
>NZ_CP025265.1|WP_076857048.1|1285595_1288061_+|TonB-dependent-siderophore-receptor
MHAPCMPQFAPQFAPRRVVARVAAAALFSACAAPGVSGAAEPAAATRGYDIPAGPLDAALTRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLLTGTGLVALRQPSGGYTLARLPAPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQQVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSLNATTDSVEVLKGPASLLYGIMDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTFDSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSLAWYGRDTQVVLSYEYRRFLMPFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNRETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGRRHDVQFGVDGEYRQVYRADMLRQPIKTPFSYLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLSERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAGIVYKWNDALSLYGSYTQSLKPTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDATNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYAGNRLWNVARHTASLAAVYDVGTVLGGDDLRIGAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQKLQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQF
>NZ_CP025265.1|WP_004524117.1|1284236_1285241_+|FecR-family-protein
MSGAKPAGGPPAVPERVARRAVQWWVELGAAPASDATRARLARWRAEHPAHDAAWRHIEAVNGRLGHVASALSARAARAALLPPRSRGRRAALKALAVLLFAGGGAWTGQAYLPWRAWGADVRTALGERRTITLADGTTVVLNTDTAIDIRFDDATRGVRLLRGEIMVTSGRDAARAVPRALVIATAHGDVRPVGTRFSVRERGDATRVDVFDGAVRIAPRRAVGRAPLITAGHGADFTRDALAGPPRVLGASAGAWVDGILVASNLRLADLLAEIDRYRPGRVRCDAAVANLRVSGTYPLDDTDRILDTLRETLPVDVEYLSRYWVTVVAARD
>NZ_CP025265.1|WP_004524116.1|1283730_1284240_+|sigma-70-family-RNA-polymerase-sigma-factor
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
>NZ_CP025265.1|WP_076802513.1|1283453_1283672_+|hypothetical-protein
MSHGRGPFVARSRRRRSRDFPPERRIGEPRSARAGRAGAPLRRGGRASRATQASRRPTDRADAFTVRLQICI
>NZ_CP025265.1|WP_004198480.1|1283229_1283457_+|hypothetical-protein
MTGKGGAAANPRAATAIVVAASGSISPASRRTALSTMKTTANATARRRDGGTMKAPKEPIASGGAVLAGSVESPV
>NZ_CP025265.1|WP_004524114.1|1282873_1283233_+|hypothetical-protein
MIRNVLIALVCAAPVAALAEPPKAAGGMIVDDDGMTLYMFDRDTMPGKSACTGGCTANWPAALADAYDKPGGDLGFIAAAGGKHQWTYKGRPLYRFSGDAKPGQHTGDGFGGMWHVARP
>NZ_CP025265.1|WP_004524113.1|1281847_1282834_+|YceI-family-protein
MDAAGSFASFAATLACALSAWLAPSAGIAQTAWPPDAPRVAGASGPPRTPGLARTPAAVTDAPGAATAGALAASPPAATRYRLDPRHSGVTFRVDNFWHAHLTMRFARMRAELSDVGDDRLASRVDVTVDAASLGANVPFVAALVKGSAMLDVARYPEIRFVGTRFERTGATTGVLTGELTIRAMTRPITLAVRFDAGRQLEPDTGARAEREGDESDESGESNPAERRAGQGRRAAELRDGRPRDAGPGVADSRDAMRRETDSGSAHRGAEPPERIARAAPDAARALAFVADGHFSRTAFGLSRWLPAVGDDVRLRIRAEFVRARADP
>NZ_CP025265.1|WP_004524112.1|1280954_1281779_+|anti-sigma-factor
MSDDPDLCVAPESDEPGLLALSAFVDGELPDAQSRAMARRLASDPRTAGIAAHYRAQRAALRALFADPVAPRHGPCVAWPVRTPWWRRAAFAGGALAAGVALGWLGGALAPRFAPSTALQWVAPAAAQRAFARDADLAYALYAPDARHPVEIAVGRDGAPLAWLSARVGRRIAAPSLREYGFALLGARLLPGAGGPAAQFMYENAAGERLALYVSASAQREAAARPWRDGGRHTFYWVSERTAYALSGQLDEGRLRTIAADVCGELGGHPQRWR
>NZ_CP025265.1|WP_004199294.1|1280436_1280958_+|sigma-70-family-RNA-polymerase-sigma-factor
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR
>NZ_CP025265.1|WP_004524120.1|1290334_1292137_-|sugar-ABC-transporter-ATP-binding-protein
MKAALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNGAGKSTLVKLLAGLHAPDEGEITVGGVPFASGGGGSRASAGAARRHSTGIGFIHQERLLPATFTVAEALFFPHPPTLGGRASRLARLLPLDVWRMRRDCRAVLHTQFGLDLAPDRLIGELSVAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDEIARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAPSAAAARADARVSARANAWGDDPHRAPAGADPARRGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGLTGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHDAVAHGIALVPENRAAHGVALTLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKVALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDRVYVMARGEIVAQCASAETTTQDVLAWATLARDARPGGGAGAHDAAARTGTPGAAGAASSAAKVAT
>NZ_CP025265.1|WP_043943959.1|1292133_1293183_-|sugar-ABC-transporter-substrate-binding-protein
MPRPLPSLARLLSMLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGAVDEVKRLGGTPIALDAGRNDSRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGIPLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGNVLVFNGFYGVPVCAIRYDQLKAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGAISAIWAAWDIPQVGATQAVDAAGRREIRTYAVDGSPEAVALVRNPTSSAAAVVAQQPALIGRTAVRNVARYLAGDRSLPAYTFVPSVLVTKDDAGVARPALGQAPAAAGLARR
>NZ_CP025265.1|WP_154304653.1|1293271_1293700_-|sugar-ABC-transporter-substrate-binding-protein
MQPFAKLPSKRAAPPPRRITRRGGLSYGFSCMPARNFALAERFREDFVSFDAARAAAFSDWPAISRFRFNGASSGLFSIALKFICDCPIPIETTRRRSRVPADIGIGIDAREAAGPASARAGRVRFPPRIFACAARAFAAIP
>NZ_CP025265.1|WP_004543576.1|1293814_1294555_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MRRTGVFAMEHEVRPSMATTRRHATATALAAAARPCAAPHADSFLGILIEVFARVVAALALGVFAYAAYLQWRLDPSRITLILLAVSTTLTVGLSLFAEPPKKRDWSPLALFFSVGGTFYYLVFQLTASRQLLPEAAGAAIQLIGLFWQLFAKVSLRKSFGILPANRGIVSRGAYRFVRHPMYLGYLIIDAGFLLTNFSTRNLIAVALQIGLQLGRIRREERLLSEDAAYRAYRRSVRYRVIPGLF
>NZ_CP025265.1|WP_004554968.1|1294888_1295140_-|hypothetical-protein
MFSTLSHVLPRVVLLGEPLANAPFVDGEITRPFRDGFWLLPYSTLCLPLAASDTVIVEPDRPGSAGALAGRQLDAGRQSPSPL
>NZ_CP025265.1|WP_004524124.1|1295302_1296562_-|monooxygenase
MSHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALRVPVHAGGAGASVPQLVQLLIELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFASGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYSTGAIFADWIDVYAQRTDDGGPVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQLFHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIALRAAQPSQRAYEARGGGDAAAEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASATRATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPPYVWQIGAGPGGPREPEQAA
>NZ_CP025265.1|WP_004524126.1|1296803_1298267_-|MFS-transporter
MSTLDLDAPISTPIRTASDVSRLINASGARANHARVIVLLALGGVFLDAYDLTTLSYGIEDVTREFGLTPALSGLVSASIMIGTILGSLLGGWFTDKVGRYRVFMADMLCFVVAAIVAGLAPNVEVLIAARFVMGLGVGIDLPVAMAFLAEFSKFGGRGNKASRLAAWCPMWYAASSVCFLIVFGLYFALPAEHARWLWRASLIFGAVPALAIIAVRGRYMNESPLWAANQGKLRDAARILRESYGIRAHAADDTPRAAPSQPPVSFRVLFRQPYLPRTLVASAMNLCIPFEYTAIAFFLPTILTQFLGAGVFETIAATLALNVLFALTGGLLGMRLAYRLPSRRVAIAGFALQAAALVTLALLGHPQTALGIGAAVLMLGLWLFAEGFGPGAQMMIYPALSYPASIRGTGLGFGRALTGIGSAFALFVLPILNARLGAGMFWIVAIAAFVPIVFLAAIRFEPTARDVDIDAGSRAQGDRARVRAAA
>NZ_CP025265.1|WP_004198472.1|1298699_1298948_-|hypothetical-protein
MKAPIIAIAFGIALAACAPLRQDSRPGEAGPPIAAPNRGGGNTPPSGARRAANEVVDYAGRPCVNQTLYVKTHPCIFPRLQR
>NZ_CP025265.1|WP_004524129.1|1299394_1299595_-|hypothetical-protein
MFIASSPSSGSLSDDSCLYFERRAVRNHERAMTNPSSARGAASAARADASMTKISCSRQRGAAAMP
>NZ_CP025265.1|WP_004524130.1|1299587_1299860_+|DUF4148-domain-containing-protein
MNTKTTIVWATAAALTALALSPAAFAQGKTRDEVRQELIRAQHEGVVPAGKNDYPPSAALVARNKELHAISVHGGKTDLALDQHDQTVAR

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Crispr_ID: NZ_CP025265_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025265_3

2485500-2485592

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025265_3

>merge|NZ_CP025265|3|2485500-2485592|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NZ_CP025265|3|1|2485500-2485592|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025265.1\|WP_004524993.1\|2474242_2475367_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP025265.1\|WP_004524984.1\|2487054_2487546_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP025265.1\|WP_004524991.1\|2477475_2477634_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004557861.1\|2482218_2483067_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP025265.1\|WP_004524985.1\|2486753_2487062_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP025265.1\|WP_004524989.1\|2479831_2480341_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004524981.1\|2489575_2489833_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_050020039.1\|2491741_2493172_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP025265.1\|WP_004524986.1\|2486055_2486757_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP025265.1\|WP_004557862.1\|2483063_2485064_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_CP025265.1\|WP_004524994.1\|2470982_2474240_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP025265.1\|WP_004198321.1\|2480978_2482004_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP025265.1\|WP_004524979.1\|2493168_2494347_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP025265.1\|WP_004524982.1\|2487987_2489604_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP025265.1\|WP_004524983.1\|2487542_2487998_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP025265.1\|WP_004188840.1\|2489964_2491758_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NZ_CP025265.1\|WP_045243597.1\|2480398_2480902_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004187193.1\|2485810_2486059_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP025265.1\|WP_004524990.1\|2477725_2479291_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP025265.1\|WP_004524992.1\|2475516_2477352_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425

Protein	Function_ID	Function_description	E-value
NZ_CP025265.1\|WP_004524993.1\|2474242_2475367_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	3.93708e-26
NZ_CP025265.1\|WP_004557861.1\|2482218_2483067_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	1.98923e-33
NZ_CP025265.1\|WP_004524985.1\|2486753_2487062_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	4.12229e-10
NZ_CP025265.1\|WP_004524990.1\|2477725_2479291_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP025265.1\|WP_004524984.1\|2487054_2487546_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	7.77353e-17
NZ_CP025265.1\|WP_050020039.1\|2491741_2493172_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP025265.1\|WP_004524994.1\|2470982_2474240_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.69206e-92
NZ_CP025265.1\|WP_004198321.1\|2480978_2482004_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP025265.1\|WP_004524979.1\|2493168_2494347_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP025265.1\|WP_004524982.1\|2487987_2489604_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP025265.1\|WP_004524983.1\|2487542_2487998_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	1.39225e-62
NZ_CP025265.1\|WP_004188840.1\|2489964_2491758_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.3979e-179
NZ_CP025265.1\|WP_004557862.1\|2483063_2485064_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP025265.1\|WP_004187193.1\|2485810_2486059_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP025265.1\|WP_004524986.1\|2486055_2486757_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	8.79986e-122
NZ_CP025265.1\|WP_004524992.1\|2475516_2477352_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.89944e-131

>NZ_CP025265.1|WP_004557862.1|2483063_2485064_-|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVDELIERIAADAAHRATAGMPAEDAAGDIDGAFGGEQARGDADRDADHGANREVSREVSPEASREVSREVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPPPDARGDAARTAPSPQGGAEANVNAAANVDAEAEARHKR
>NZ_CP025265.1|WP_004557861.1|2482218_2483067_-|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPGPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEATERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_CP025265.1|WP_004198321.1|2480978_2482004_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGATFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP025265.1|WP_045243597.1|2480398_2480902_-|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREARAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NZ_CP025265.1|WP_004524989.1|2479831_2480341_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP025265.1|WP_004524990.1|2477725_2479291_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP025265.1|WP_004524991.1|2477475_2477634_+|hypothetical-protein
MRARRSHGAGIRLGFDKPSGTHSSPHDGWVQTDIAMRLLQISLMPDQALANE
>NZ_CP025265.1|WP_004524992.1|2475516_2477352_+|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAIIERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRAKTAAARVQR
>NZ_CP025265.1|WP_004524993.1|2474242_2475367_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMDAGDFTFALDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP025265.1|WP_004524994.1|2470982_2474240_+|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAVDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRARGAATLEEAFIGYLVDASAQDAQEAQGGAGERPGAGERAAGESVAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSDVGSDVGSEVASEAGLAASAESGSERGVAHGAERAREPAADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHDLYSQFWPLAACVPVILGATILLLKKQER
>NZ_CP025265.1|WP_004187193.1|2485810_2486059_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP025265.1|WP_004524986.1|2486055_2486757_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSIGSVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP025265.1|WP_004524985.1|2486753_2487062_-|membrane-protein
MIEMWETARASFDGIAAAIGLALGFVAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP025265.1|WP_004524984.1|2487054_2487546_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREARDDAARGDARHAGAGAAPDDPRGAARRDPSPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMRAQQHGDRDD
>NZ_CP025265.1|WP_004524983.1|2487542_2487998_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARLEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP025265.1|WP_004524982.1|2487987_2489604_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDVSDVGDARDEGAGRIVAVRGAVVDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGVPGDDGAALAADVERRPIHRGAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSGTTSDPASGSAEPQGARHGR
>NZ_CP025265.1|WP_004524981.1|2489575_2489833_+|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NZ_CP025265.1|WP_004188840.1|2489964_2491758_+|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NZ_CP025265.1|WP_050020039.1|2491741_2493172_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MCSRNKECRVDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP025265.1|WP_004524979.1|2493168_2494347_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHTVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHVRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA

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Crispr_ID: NZ_CP025265_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025265_4

2936405-2936550

Orphan

Consensus_repeat	Method
GCAGAGGCGCCGCCGCCGGAATGCCCGATCATCGGGATGCTCGATCGCCGAAG	PILER-CR
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP025265_4

>merge|NZ_CP025265|4|2936405-2936550|PILER-CR,CRISPRCasFinder
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATGCCCGATCATCGGGATGCTCGATCGCCG

>NZ_CP025265|4|2|2936405-2936550|PILER-CR
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAA	TGCCCGAT
CATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAAT	GCCCGATCA
TCGGGATGCTCGATCGCCG

>NZ_CP025265|4|2|2936455-2936540|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATGCCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025265.1\|WP_011204696.1\|2930251_2930683_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004523287.1\|2930982_2932641_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP025265.1\|WP_004187137.1\|2946222_2946672_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP025265.1\|WP_004523279.1\|2942900_2943932_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP025265.1\|WP_004523286.1\|2932934_2935208_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP025265.1\|WP_004557971.1\|2926939_2927380_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP025265.1\|WP_004523278.1\|2943928_2945761_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP025265.1\|WP_076832348.1\|2925892_2926183_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004552279.1\|2938667_2940452_+\|ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|180772
NZ_CP025265.1\|WP_004523275.1\|2949893_2951699_-\|fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235730
NZ_CP025265.1\|WP_004200705.1\|2947124_2947778_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP025265.1\|WP_004187469.1\|2935340_2935736_-\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NZ_CP025265.1\|WP_076856963.1\|2926548_2926854_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240624
NZ_CP025265.1\|WP_011204702.1\|2948686_2949814_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP025265.1\|WP_004523291.1\|2929141_2930077_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP025265.1\|WP_004200700.1\|2927728_2928844_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP025265.1\|WP_004529498.1\|2947845_2948280_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP025265.1\|WP_004548540.1\|2940526_2942338_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_CP025265.1\|WP_009927403.1\|2928904_2929015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025265.1\|WP_004523284.1\|2937117_2938383_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908

Protein	Function_ID	Function_description	E-value
NZ_CP025265.1\|WP_004523287.1\|2930982_2932641_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	2.19137e-37
NZ_CP025265.1\|WP_004187137.1\|2946222_2946672_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.39507e-50
NZ_CP025265.1\|WP_004523279.1\|2942900_2943932_+\|hypothetical-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	3.7258e-30
NZ_CP025265.1\|WP_004523286.1\|2932934_2935208_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	5.00175e-57
NZ_CP025265.1\|WP_004557971.1\|2926939_2927380_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	7.66567e-25
NZ_CP025265.1\|WP_004523278.1\|2943928_2945761_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	8.23256e-107
NZ_CP025265.1\|WP_004200705.1\|2947124_2947778_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	6.31252e-20
NZ_CP025265.1\|WP_004523275.1\|2949893_2951699_-\|fatty-acid--CoA-ligase	gnl\|CDD\|235730	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP025265.1\|WP_004187469.1\|2935340_2935736_-\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP025265.1\|WP_004552279.1\|2938667_2940452_+\|ribonucleotide-reductase	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_CP025265.1\|WP_076856963.1\|2926548_2926854_-\|hypothetical-protein	gnl\|CDD\|240624	cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor. The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.	0.00562797
NZ_CP025265.1\|WP_004523291.1\|2929141_2930077_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.07132e-61
NZ_CP025265.1\|WP_011204702.1\|2948686_2949814_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	3.6975e-55
NZ_CP025265.1\|WP_004200700.1\|2927728_2928844_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11
NZ_CP025265.1\|WP_004529498.1\|2947845_2948280_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP025265.1\|WP_004548540.1\|2940526_2942338_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	4.24651e-75
NZ_CP025265.1\|WP_004523284.1\|2937117_2938383_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	1.01575e-113

>NZ_CP025265.1|WP_004187469.1|2935340_2935736_-|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP025265.1|WP_004523286.1|2932934_2935208_-|FAD-dependent-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGSHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAARKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP025265.1|WP_004523287.1|2930982_2932641_+|GMC-family-oxidoreductase
MKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_CP025265.1|WP_011204696.1|2930251_2930683_+|hypothetical-protein
MHQERRKRNADRHGTHPYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIHERIEHKARPDVRRAERPISQDVAQTPIGAAGAISPSTARSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_CP025265.1|WP_004523291.1|2929141_2930077_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCDEHAPA
>NZ_CP025265.1|WP_009927403.1|2928904_2929015_-|hypothetical-protein
MQSTGSFDISARRMIEFRSVNKSNHDCPLEKSSGLL
>NZ_CP025265.1|WP_004200700.1|2927728_2928844_-|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP025265.1|WP_004557971.1|2926939_2927380_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPARIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP025265.1|WP_076856963.1|2926548_2926854_-|hypothetical-protein
MRHDSRLRCTRDDDDIDQCHRQSGRSSLDAEPNRGCAARRLRASGGRRPRGANTEPRRRKPHARVIRQRSWRAARTRPCRRFSAACGRFGQAMARRARPPA
>NZ_CP025265.1|WP_076832348.1|2925892_2926183_+|hypothetical-protein
MRHACRACGPRVRRTRFCAMRKRGETHGRSLSLSLAHRATDARRARCPHSRHELCTRARAPARERRRCIASRISLITTINFRAVAFRPRLPKHYID
>NZ_CP025265.1|WP_004523284.1|2937117_2938383_+|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPLEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPQRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
>NZ_CP025265.1|WP_004552279.1|2938667_2940452_+|ribonucleotide-reductase
MIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP025265.1|WP_004548540.1|2940526_2942338_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELAARRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLERALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDRSDAGAAVLATQRASADPLDADERARTIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NZ_CP025265.1|WP_004523279.1|2942900_2943932_+|hypothetical-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP025265.1|WP_004523278.1|2943928_2945761_+|STAS-domain-containing-protein
MTERERAARGRNDARRGGSDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWPGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLIAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARH
>NZ_CP025265.1|WP_004187137.1|2946222_2946672_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKEVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP025265.1|WP_004200705.1|2947124_2947778_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDIYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP025265.1|WP_004529498.1|2947845_2948280_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP025265.1|WP_011204702.1|2948686_2949814_-|porin
MNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVVRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASIVLKYASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRSANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF
>NZ_CP025265.1|WP_004523275.1|2949893_2951699_-|fatty-acid--CoA-ligase
MHATDQHSALNAAPSAYVYPLLVGQLLTHARGADADRQIVYRGDVRHSYAQFRERIGRLAGALAALGVGADATVAVMDWDSHRYLESYFAIPMMGATLFTVNVRLSPRQIAHTLRDARASVVVAHADFLPLLEQVRDALGDSTCVIVACDGGAMPATSLPLAGEYERLVAAADPDYPFADFDENARAVLFYTTGTTGDPKGVCYSHRQIVLHALATAAALGAARDGQRLHRDDVYMPITPMFHVMAWGMPYIAVMLGLKIVLPGRYRAHALLDLRQAERVTFSHCVPAVLQMLLDEARLRACDLSGWKMIVGGSALPASLCRAARARRIDVFAGYGMSETGPVVALAQLRGTEGGVDVHADEDAGIDADVGAGIDVDTDVDADINANAGANASDSSVTTAAAHADDETAKRCAAGWPPPLVELRVVDAAMRDVPRDGRTPGEIVLRGPALALGYRGNPQASAALWAGGYLHTQDVAVMHGDGAIRIVDRIKDVIKTGGEWVSSLELEGLLNDIAGIRESAVVGVPDARWGERPAAVVVCERGAPLAAQDVRARLLEHVAANRISRYAVPECERIVFVDALPKTSVGKIDKKSLRRLVERID

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025265_1	1.4\|980362\|30\|NZ_CP025265\|CRT	980362-980391	30	NC_048768	Gordonia phage Chelms, complete genome	72299-72328	5	0.833
NZ_CP025265_1	1.4\|980362\|30\|NZ_CP025265\|CRT	980362-980391	30	NZ_CP035418	Leisingera sp. NJS204 plasmid unnamed1, complete sequence	8401-8430	5	0.833
NZ_CP025265_1	1.2\|980278\|30\|NZ_CP025265\|CRT	980278-980307	30	MK433264	Gordonia phage Tiamoceli, complete genome	55720-55749	6	0.8
NZ_CP025265_1	1.2\|980278\|30\|NZ_CP025265\|CRT	980278-980307	30	MT952843	Gordonia phage Twonlo, complete genome	56421-56450	6	0.8
NZ_CP025265_1	1.2\|980278\|30\|NZ_CP025265\|CRT	980278-980307	30	MK977704	Gordonia Terrae phage RoadKill, complete genome	55830-55859	6	0.8
NZ_CP025265_1	1.2\|980278\|30\|NZ_CP025265\|CRT	980278-980307	30	KR053200	Gordonia phage GTE6, complete genome	56937-56966	6	0.8
NZ_CP025265_1	1.4\|980362\|30\|NZ_CP025265\|CRT	980362-980391	30	NZ_CP038237	Leisingera sp. NJS201 plasmid unnamed3, complete sequence	122832-122861	6	0.8
NZ_CP025265_1	1.2\|980278\|30\|NZ_CP025265\|CRT	980278-980307	30	MK450421	Streptomyces phage Vash, complete genome	22111-22140	8	0.733
NZ_CP025265_1	1.4\|980362\|30\|NZ_CP025265\|CRT	980362-980391	30	MH431930	Paenibacillus phage Wanderer, complete genome	34889-34918	8	0.733
NZ_CP025265_1	1.4\|980362\|30\|NZ_CP025265\|CRT	980362-980391	30	MH454081	Paenibacillus phage LincolnB, complete genome	34879-34908	8	0.733
NZ_CP025265_1	1.4\|980362\|30\|NZ_CP025265\|CRT	980362-980391	30	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	22912-22941	8	0.733
NZ_CP025265_1	1.4\|980362\|30\|NZ_CP025265\|CRT	980362-980391	30	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	22858-22887	8	0.733
NZ_CP025265_1	1.4\|980362\|30\|NZ_CP025265\|CRT	980362-980391	30	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	114950-114979	8	0.733
NZ_CP025265_1	1.2\|980278\|30\|NZ_CP025265\|CRT	980278-980307	30	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1837149-1837178	9	0.7
NZ_CP025265_1	1.4\|980362\|30\|NZ_CP025265\|CRT	980362-980391	30	NC_049489	Arthrobacter phage DrYang, complete genome	67524-67553	9	0.7

1. spacer 1.4|980362|30|NZ_CP025265|CRT matches to NC_048768 (Gordonia phage Chelms, complete genome) position: , mismatch: 5, identity: 0.833

acgccgaaccgaacaccgaaccgaacaccg	CRISPR spacer
tgaccgaaccgaccaccgaaccgaccaccg	Protospacer
  .********* *********** *****

2. spacer 1.4|980362|30|NZ_CP025265|CRT matches to NZ_CP035418 (Leisingera sp. NJS204 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

acgccgaaccgaacaccgaaccgaacaccg	CRISPR spacer
tcgcaatcccgaacaccgaaccgaacaccg	Protospacer
 *** .  **********************

3. spacer 1.2|980278|30|NZ_CP025265|CRT matches to MK433264 (Gordonia phage Tiamoceli, complete genome) position: , mismatch: 6, identity: 0.8

acgccgaaccgaacgccgaaccgaacgccg	CRISPR spacer
acccgatgccgaaggccgaaccgaacgccg	Protospacer
** * . .***** ****************

4. spacer 1.2|980278|30|NZ_CP025265|CRT matches to MT952843 (Gordonia phage Twonlo, complete genome) position: , mismatch: 6, identity: 0.8

acgccgaaccgaacgccgaaccgaacgccg	CRISPR spacer
acccgatgccgaaggccgaaccgaacgccg	Protospacer
** * . .***** ****************

5. spacer 1.2|980278|30|NZ_CP025265|CRT matches to MK977704 (Gordonia Terrae phage RoadKill, complete genome) position: , mismatch: 6, identity: 0.8

acgccgaaccgaacgccgaaccgaacgccg	CRISPR spacer
acccgatgccgaaggccgaaccgaacgccg	Protospacer
** * . .***** ****************

6. spacer 1.2|980278|30|NZ_CP025265|CRT matches to KR053200 (Gordonia phage GTE6, complete genome) position: , mismatch: 6, identity: 0.8

acgccgaaccgaacgccgaaccgaacgccg	CRISPR spacer
acccgatgccgaaggccgaaccgaacgccg	Protospacer
** * . .***** ****************

7. spacer 1.4|980362|30|NZ_CP025265|CRT matches to NZ_CP038237 (Leisingera sp. NJS201 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

acgccgaaccgaacaccgaaccgaacaccg	CRISPR spacer
tcgcaatcccgaacaccgaaccaaacaccg	Protospacer
 *** .  **************.*******

8. spacer 1.2|980278|30|NZ_CP025265|CRT matches to MK450421 (Streptomyces phage Vash, complete genome) position: , mismatch: 8, identity: 0.733

acgccgaaccgaacgccgaaccgaacgccg	CRISPR spacer
tctgccgacggaacgccgaaccgaacgcgc	Protospacer
 *  * .** ******************

9. spacer 1.4|980362|30|NZ_CP025265|CRT matches to MH431930 (Paenibacillus phage Wanderer, complete genome) position: , mismatch: 8, identity: 0.733

acgccgaaccgaacaccgaaccgaacaccg	CRISPR spacer
tacccgaccggaacaccgaaccgaacgggg	Protospacer
   **** * ****************.  *

10. spacer 1.4|980362|30|NZ_CP025265|CRT matches to MH454081 (Paenibacillus phage LincolnB, complete genome) position: , mismatch: 8, identity: 0.733

acgccgaaccgaacaccgaaccgaacaccg	CRISPR spacer
tacccgaccggaacaccgaaccgaacgggg	Protospacer
   **** * ****************.  *

11. spacer 1.4|980362|30|NZ_CP025265|CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.733

acgccgaaccgaacaccgaaccgaacaccg	CRISPR spacer
tggccgaaccgaccaccgaaccgcgtccgg	Protospacer
  ********** ********** .. * *

12. spacer 1.4|980362|30|NZ_CP025265|CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.733

acgccgaaccgaacaccgaaccgaacaccg	CRISPR spacer
tggccgaaccgaccaccgaaccgcgtccgg	Protospacer
  ********** ********** .. * *

13. spacer 1.4|980362|30|NZ_CP025265|CRT matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.733

acgccgaaccgaacaccgaaccgaacaccg	CRISPR spacer
acgtcgaaccgaacaccgagccggccttgc	Protospacer
***.***************.***. * .

14. spacer 1.2|980278|30|NZ_CP025265|CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 9, identity: 0.7

acgccgaaccgaacgccgaaccgaacgccg	CRISPR spacer
gtctcgaaccgatcgccgcaccgaacgatc	Protospacer
.. .******** ***** ******** .

15. spacer 1.4|980362|30|NZ_CP025265|CRT matches to NC_049489 (Arthrobacter phage DrYang, complete genome) position: , mismatch: 9, identity: 0.7

acgccgaaccgaacaccgaaccgaacaccg	CRISPR spacer
cgtccgaaccgatcaccgaaccgagctatt	Protospacer
   ********* ***********.*  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46872 : 88812

Streptococcus_phage(33.33%)

protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004521261.1\|46872_48336_-\|transposase	IS1182-like element ISBma2 family transposase	A0A1X9I5T2	Streptococcus_phage	8.8e-80	38.6
WP_004523579.1\|48471_49371_-	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004523578.1\|49533_50781_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_004523576.1\|50933_51866_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004529705.1\|52404_53166_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_004557678.1\|53164_53449_+	hypothetical protein	NA	NA	NA	NA
WP_009922971.1\|53396_53507_-	hypothetical protein	NA	NA	NA	NA
WP_080110758.1\|53534_53954_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_004538869.1\|54039_54189_+	hypothetical protein	NA	NA	NA	NA
WP_004557679.1\|54394_56311_+	hypothetical protein	NA	NA	NA	NA
WP_004554724.1\|56584_59482_+	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_004523567.1\|60081_61140_+	L-tyrosine/L-tryptophan isonitrile synthase family protein	NA	NA	NA	NA
WP_004523566.1\|61136_62051_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_004523565.1\|62076_63561_+	Pyoverdin chromophore biosynthetic protein pvcC	NA	NA	NA	NA
WP_004523564.1\|63606_65475_+	asparagine synthase (glutamine-hydrolyzing)	E3T4J5	Cafeteria_roenbergensis_virus	1.0e-16	24.3
WP_004187502.1\|65503_66475_+	quinone oxidoreductase	NA	NA	NA	NA
WP_004523563.1\|66529_67456_+	dioxygenase	NA	NA	NA	NA
WP_076856935.1\|67699_68662_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_076856936.1\|68774_69125_+	hypothetical protein	NA	NA	NA	NA
WP_024429250.1\|69630_69864_-	hypothetical protein	NA	NA	NA	NA
WP_004557682.1\|69883_73960_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_076856937.1\|73988_75269_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_004523558.1\|75342_76689_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004523557.1\|76710_77214_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004188308.1\|77320_77806_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004523555.1\|77922_79422_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004523554.1\|79456_80038_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004523553.1\|80073_83025_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2I7SAX5	Vibrio_phage	1.2e-67	29.4
WP_004523552.1\|83530_84277_+	TagK domain-containing protein	NA	NA	NA	NA
WP_004523551.1\|84273_85239_+	ImpE/SciE family protein	NA	NA	NA	NA
WP_004523550.1\|85225_85807_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004523549.1\|85837_87727_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_075019198.1\|87738_88812_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

363183 : 372491

Burkholderia_virus(66.67%)

transposase,integrase

attL 358113:358129|attR 384298:384314

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
358113:358129	attL	NA	NA	NA	NA
WP_004188376.1\|363183_365166_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.8e-83	44.8
WP_004547951.1\|365263_365644_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_004525415.1\|365637_367653_+	cation acetate symporter	NA	NA	NA	NA
WP_004525416.1\|367948_369148_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	7.7e-223	99.0
WP_004542626.1\|369144_369294_-	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	7.4e-19	98.0
WP_004542548.1\|369549_370131_+	hypothetical protein	A9YX38	Burkholderia_phage	2.2e-21	100.0
WP_004557713.1\|370376_370643_+	hypothetical protein	Q8W6Q4	Burkholderia_virus	2.1e-40	95.2
WP_004525418.1\|370627_370849_-	hypothetical protein	NA	NA	NA	NA
WP_004557715.1\|370875_370983_-	hypothetical protein	Q6JIH6	Burkholderia_virus	8.2e-12	97.1
WP_009923452.1\|370984_371116_-	bacteriophage protein Gp48	Q8W6Q2	Burkholderia_virus	2.6e-15	97.7
WP_004525419.1\|371125_371401_-	hypothetical protein	Q8W6Q1	Burkholderia_virus	2.1e-43	100.0
WP_004557717.1\|371953_372223_+	BrnT family toxin	NA	NA	NA	NA
WP_004525420.1\|372206_372491_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
384298:384314	attR	NA	NA	NA	NA

DBSCAN-SWA_3

525151 : 596922

Vibrio_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004525541.1\|525151_525919_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_004206084.1\|525957_526959_-	HpnL family protein	NA	NA	NA	NA
WP_004525542.1\|526955_527729_-	hypothetical protein	NA	NA	NA	NA
WP_004188272.1\|527725_528415_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_004188420.1\|528779_530294_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_004525545.1\|532013_532952_+	hypothetical protein	NA	NA	NA	NA
WP_004202234.1\|532985_533534_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004530038.1\|533530_535042_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|535185_535713_+	hypothetical protein	NA	NA	NA	NA
WP_004190879.1\|535792_536224_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004196180.1\|536237_538100_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|538096_539086_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004525547.1\|539088_541959_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_004525548.1\|541949_544241_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004190563.1\|544406_546695_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004525549.1\|546698_548915_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004525550.1\|548914_549985_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004525551.1\|549987_550704_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|550746_551136_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004202226.1\|551141_551735_+	hypothetical protein	NA	NA	NA	NA
WP_004525552.1\|551731_553093_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004530043.1\|553118_554834_+	OmpA family protein	NA	NA	NA	NA
WP_004525554.1\|554830_558334_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190863.1\|558392_558752_+	hypothetical protein	NA	NA	NA	NA
WP_004190471.1\|558774_559200_+	hypothetical protein	NA	NA	NA	NA
WP_004530793.1\|559424_559796_+	hypothetical protein	NA	NA	NA	NA
WP_009923697.1\|559893_560067_-	hypothetical protein	NA	NA	NA	NA
WP_004524288.1\|560346_561246_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004199051.1\|561356_561485_+	hypothetical protein	NA	NA	NA	NA
WP_004524287.1\|561492_562812_+	glycosyltransferase	NA	NA	NA	NA
WP_004524286.1\|562808_564395_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_004524284.1\|564647_565643_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_038719655.1\|565768_565951_+	hypothetical protein	NA	NA	NA	NA
WP_004532078.1\|565947_567531_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004186853.1\|568275_569529_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004557340.1\|570060_571725_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	7.0e-57	31.4
WP_076856828.1\|571857_573423_-	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_004523134.1\|573611_574628_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004523135.1\|575074_576274_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_004198247.1\|576451_577477_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004523136.1\|577912_579187_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.3e-105	54.1
WP_004186989.1\|579259_580231_+	membrane dipeptidase	NA	NA	NA	NA
WP_004186987.1\|580381_580915_+	4-vinyl reductase	NA	NA	NA	NA
WP_004523137.1\|580975_583039_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004186901.1\|583041_584967_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_004523138.1\|584971_586144_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004186884.1\|586140_586926_+	drug:proton antiporter	NA	NA	NA	NA
WP_004523139.1\|586950_588219_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004523140.1\|588239_589385_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004523141.1\|589494_590358_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004523142.1\|590538_592194_+	APC family permease	NA	NA	NA	NA
WP_004186920.1\|592280_593156_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_004523143.1\|593299_594199_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004523144.1\|594334_595888_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_076856829.1\|595923_596922_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_4

2621793 : 2698204

Stx2-converting_phage(25.0%)

transposase,integrase

attL 2625518:2625536|attR 2670547:2670565

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004524867.1\|2621793_2622522_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	7.1e-22	31.2
WP_004552499.1\|2622531_2622789_-	hypothetical protein	NA	NA	NA	NA
WP_123874560.1\|2622951_2623170_-	hypothetical protein	NA	NA	NA	NA
WP_004524865.1\|2623153_2624293_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004524864.1\|2624292_2626053_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
2625518:2625536	attL	NA	NA	NA	NA
WP_004524863.1\|2626495_2635921_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_004546318.1\|2636072_2636270_-	hypothetical protein	NA	NA	NA	NA
WP_004533385.1\|2636270_2636534_-	putative Immunity protein 75	NA	NA	NA	NA
WP_004553665.1\|2636890_2637052_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_004524860.1\|2637164_2641760_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	3.8e-28	36.0
WP_004524859.1\|2641746_2643015_-	hypothetical protein	NA	NA	NA	NA
WP_004524858.1\|2643030_2645235_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.1e-41	27.7
WP_050772430.1\|2646691_2647681_-	DUF1016 domain-containing protein	A0A0U2BZN7	Salmonella_phage	6.7e-23	43.4
WP_004524854.1\|2648694_2649162_+	decarboxylase	NA	NA	NA	NA
WP_050772428.1\|2649317_2649887_+	hypothetical protein	NA	NA	NA	NA
WP_050772423.1\|2649950_2650343_+	hypothetical protein	NA	NA	NA	NA
WP_004524853.1\|2651531_2651942_-	RidA family protein	NA	NA	NA	NA
WP_011205724.1\|2652056_2653112_-	asparaginase	NA	NA	NA	NA
WP_004557904.1\|2653346_2653979_+	DNA-binding protein	NA	NA	NA	NA
WP_004524850.1\|2654874_2655312_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009941135.1\|2656050_2656236_-	hypothetical protein	NA	NA	NA	NA
WP_154218690.1\|2656211_2656358_+	hypothetical protein	NA	NA	NA	NA
WP_009941136.1\|2656548_2657628_-	porin	NA	NA	NA	NA
WP_076857146.1\|2658039_2659479_-	aldehyde dehydrogenase (NADP(+))	NA	NA	NA	NA
WP_004557909.1\|2659680_2660865_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_004557911.1\|2660875_2661772_-	aldose 1-epimerase	NA	NA	NA	NA
WP_004524844.1\|2661765_2662536_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_020850130.1\|2662550_2663414_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-13	25.4
WP_004524842.1\|2663410_2664379_-	ABC transporter permease	NA	NA	NA	NA
WP_004524841.1\|2664399_2665398_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004524840.1\|2665435_2666638_-	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	6.9e-46	31.9
WP_004557914.1\|2666648_2667362_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_004557915.1\|2667493_2668384_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_076845694.1\|2668825_2669455_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	6.4e-27	38.1
WP_004524835.1\|2669462_2671025_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.6e-149	53.3
2670547:2670565	attR	NA	NA	NA	NA
WP_004524834.1\|2671054_2671402_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-40	72.9
WP_004524833.1\|2671398_2671806_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	3.2e-11	36.5
WP_009927042.1\|2672238_2674272_-	hypothetical protein	NA	NA	NA	NA
WP_038719687.1\|2674512_2676684_-	alpha-galactosidase	NA	NA	NA	NA
WP_004524829.1\|2676688_2677540_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004544732.1\|2677540_2678494_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004524827.1\|2678526_2679768_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004524825.1\|2679803_2681048_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_075019267.1\|2681090_2683151_-	hypothetical protein	NA	NA	NA	NA
WP_004524823.1\|2683501_2684560_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_004552182.1\|2685954_2686740_+	hypothetical protein	NA	NA	NA	NA
WP_076857150.1\|2687471_2688071_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004557924.1\|2690082_2690649_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_085965894.1\|2693774_2694955_-\|transposase	IS3-like element ISBps1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.8e-60	42.9
WP_076857149.1\|2695581_2696733_+	hypothetical protein	NA	NA	NA	NA
WP_157801140.1\|2696743_2696995_-	hypothetical protein	NA	NA	NA	NA
WP_004557926.1\|2698045_2698204_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP025264

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP025265

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection