CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP025281	Campylobacter coli strain YH503 chromosome, complete genome	1 crisprs	cas14j,cas2,cas1,csa3	0	8	1	0

1. NZ_CP025281

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025281_1

• CRISPR_ID: NZ_CP025281_1
• CRISPR_location: 1463247-1463942
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 10 spacers
• Cas_protein_info: cas2,cas1

Consensus repeat of NZ_CP025281_1

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

spacers of NZ_CP025281_1

>1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT
GCACCTGTTTTTGATTGAACGAAGCAACCA
>1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT
AAACTTTTTACAGCTTTGTAGAATATATAA
>1.3|1463415|30|NZ_CP025281|CRISPRCasFinder,CRT
TTATTTTCAAGTGAAAAGGAATAAAATGTT
>1.4|1463481|30|NZ_CP025281|CRISPRCasFinder,CRT
GAACCTTTAGAGTATAACGATAATCAAGTA
>1.5|1463547|30|NZ_CP025281|CRISPRCasFinder,CRT,PILER-CR
TTATGAATGTAATTTAAGTACAAGCTTTAG
>1.6|1463613|30|NZ_CP025281|CRISPRCasFinder,CRT,PILER-CR
TAAATTGCTTAATTGTGAAAACCAATTATT
>1.7|1463679|30|NZ_CP025281|CRISPRCasFinder,CRT,PILER-CR
AATCAAGAGCGCATAGGAAAAGATATATAT
>1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT
AAATAATTTCAGTAAAAACACTTGACAAAT
>1.9|1463811|30|NZ_CP025281|CRISPRCasFinder,CRT
TTTCTGCATTATCGTTCATTTTACCTATAA
>1.10|1463877|30|NZ_CP025281|CRISPRCasFinder,CRT
TCACTTGAGCTTTTTTTAAGAATAGGAGTA
>1.11|1463285|29|NZ_CP025281|PILER-CR
GCACCTGTTTTTGATTGAACGAAGCAACC
>1.12|1463351|29|NZ_CP025281|PILER-CR
AAACTTTTTACAGCTTTGTAGAATATATA

CRISPR arrays and Neighbor proteins around NZ_CP025281_1

CRISPR arrays

The CRISPR arrays of NZ_CP025281_1

>merge|NZ_CP025281|1|1463247-1463942|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGCACCTGTTTTTGATTGAACGAAGCAACCAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAAACTTTTTACAGCTTTGTAGAATATATAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTATTTTCAAGTGAAAAGGAATAAAATGTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGAACCTTTAGAGTATAACGATAATCAAGTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTATGAATGTAATTTAAGTACAAGCTTTAGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTAAATTGCTTAATTGTGAAAACCAATTATTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAATCAAGAGCGCATAGGAAAAGATATATATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAAATAATTTCAGTAAAAACACTTGACAAATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTCTGCATTATCGTTCATTTTACCTATAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTCACTTGAGCTTTTTTTAAGAATAGGAGTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP025281|1|1|1463247-1463942|CRISPRCasFinder
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCACCTGTTTTTGATTGAACGAAGCAACCA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAACTTTTTACAGCTTTGTAGAATATATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTATTTTCAAGTGAAAAGGAATAAAATGTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GAACCTTTAGAGTATAACGATAATCAAGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTATGAATGTAATTTAAGTACAAGCTTTAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAAATTGCTTAATTGTGAAAACCAATTATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AATCAAGAGCGCATAGGAAAAGATATATAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAATAATTTCAGTAAAAACACTTGACAAAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCTGCATTATCGTTCATTTTACCTATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCACTTGAGCTTTTTTTAAGAATAGGAGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP025281|1|1|1463247-1463942|CRT
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCACCTGTTTTTGATTGAACGAAGCAACCA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAACTTTTTACAGCTTTGTAGAATATATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTATTTTCAAGTGAAAAGGAATAAAATGTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GAACCTTTAGAGTATAACGATAATCAAGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTATGAATGTAATTTAAGTACAAGCTTTAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAAATTGCTTAATTGTGAAAACCAATTATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AATCAAGAGCGCATAGGAAAAGATATATAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAATAATTTCAGTAAAAACACTTGACAAAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCTGCATTATCGTTCATTTTACCTATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCACTTGAGCTTTTTTTAAGAATAGGAGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP025281|1|1|1463248-1463414|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGC	ACCTGTTTTTGATTGAACGAAGCAACCAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAA	ACTTTTTACAGCTTTGTAGAATATATAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTATTTTCAAGTGAAAAGGAATAAAATGTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGAACCTTTAGAGTATAACGATAATCAAGTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTATGAATGTAATTTAAGTACAAGCTTTAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAAATTGCTTAATTGTGAAAACCAATTATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AATCAAGAGCGCATAGGAAAAGATATATAT


>NZ_CP025281|1|2|1463511-1463744|PILER-CR
	ACCTGTTTTTGATTGAACGAAGCAACCAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAA	ACTTTTTACAGCTTTGTAGAATATATAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTATTTTCAAGTGAAAAGGAATAAAATGTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGAACCTTTAGAGTATAACGATAATCAAGTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTATGAATGTAATTTAAGTACAAGCTTTAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAAATTGCTTAATTGTGAAAACCAATTATT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AATCAAGAGCGCATAGGAAAAGATATATAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025281.1|WP_002779484.1|1457249_1457441_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|236534
NZ_CP025281.1|WP_002799307.1|1464510_1465401_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|187851
NZ_CP025281.1|WP_058001874.1|1459721_1461263_+|multicopper-oxidase-CueO	unknown	unknown	gnl|CDD|225043
NZ_CP025281.1|WP_002790275.1|1473392_1474124_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl|CDD|225539
NZ_CP025281.1|WP_002799969.1|1475281_1475866_-|DUF2974-domain-containing-protein	unknown	unknown	gnl|CDD|238382
NZ_CP025281.1|WP_002779495.1|1469978_1470956_-|hypothetical-protein	unknown	unknown	gnl|CDD|340821
NZ_CP025281.1|WP_002780988.1|1464086_1464518_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_CP025281.1|WP_002807291.1|1461264_1461486_+|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|340452
NZ_CP025281.1|WP_079264011.1|1454445_1457250_-|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239153
NZ_CP025281.1|WP_002779485.1|1457415_1458117_-|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl|CDD|376858
NZ_CP025281.1|WP_002779352.1|1453800_1454442_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NZ_CP025281.1|WP_002779498.1|1472668_1473418_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_CP025281.1|WP_058001873.1|1461936_1463127_+|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|223380
NZ_CP025281.1|WP_002790276.1|1472066_1472672_+|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620
NZ_CP025281.1|WP_002790277.1|1471016_1472006_-|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NZ_CP025281.1|WP_002781001.1|1474130_1475168_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
NZ_CP025281.1|WP_002779489.1|1461486_1461933_+|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|223391
NZ_CP025281.1|WP_058001875.1|1458449_1459598_-|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NZ_CP025281.1|WP_002779351.1|1452871_1453804_-|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl|CDD|130645
NZ_CP025281.1|WP_002790273.1|1476089_1476539_-|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP025281.1|WP_002799307.1|1464510_1465401_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	1.8e-99	327.0	9.7
NZ_CP025281.1|WP_002780988.1|1464086_1464518_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	5e-59	192.3	1.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP025281.1|WP_002779484.1|1457249_1457441_-|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00343104
NZ_CP025281.1|WP_002799307.1|1464510_1465401_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.11594e-122
NZ_CP025281.1|WP_058001874.1|1459721_1461263_+|multicopper-oxidase-CueO	gnl|CDD|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	5.18971e-122
NZ_CP025281.1|WP_002790275.1|1473392_1474124_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl|CDD|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.1922e-81
NZ_CP025281.1|WP_002799969.1|1475281_1475866_-|DUF2974-domain-containing-protein	gnl|CDD|238382	cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.	4.21373e-08
NZ_CP025281.1|WP_002779495.1|1469978_1470956_-|hypothetical-protein	gnl|CDD|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.05794e-09
NZ_CP025281.1|WP_002780988.1|1464086_1464518_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.96465e-59
NZ_CP025281.1|WP_002807291.1|1461264_1461486_+|MoaD/ThiS-family-protein	gnl|CDD|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	3.22446e-11
NZ_CP025281.1|WP_079264011.1|1454445_1457250_-|molybdopterin-dependent-oxidoreductase	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP025281.1|WP_002779485.1|1457415_1458117_-|molecular-chaperone-TorD-family-protein	gnl|CDD|376858	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit. This family is the delta subunit of the nitrate reductase enzyme, The delta subunit is not part of the nitrate reductase enzyme but is most likely needed for assembly of the multi-subunit enzyme complex. In the absence of the delta subunit the core alpha beta enzyme complex is unstable. The delta subunit is essential for enzyme activity in vivo and in vitro. The nitrate reductase enzyme, EC:1.7.99.4 catalyze the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen. This family also now contains the family TorD, a family of cytoplasmic chaperone proteins; like many prokaryotic molybdoenzymes, the TMAO reductase (TorA) of Escherichia coli requires the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. The TorD chaperone increases apoTorA activation up to four-fold, allowing maturation of most of the apoprotein. Therefore TorD is involved in the first step of TorA maturation to make it competent to receive the cofactor.	3.61703e-05
NZ_CP025281.1|WP_002779352.1|1453800_1454442_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	1.40634e-57
NZ_CP025281.1|WP_002779498.1|1472668_1473418_+|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	5.87368e-90
NZ_CP025281.1|WP_058001873.1|1461936_1463127_+|molybdopterin-molybdotransferase-MoeA	gnl|CDD|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	9.21685e-139
NZ_CP025281.1|WP_002790276.1|1472066_1472672_+|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.03063e-69
NZ_CP025281.1|WP_002790277.1|1471016_1472006_-|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP025281.1|WP_002781001.1|1474130_1475168_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.24646e-25
NZ_CP025281.1|WP_002779489.1|1461486_1461933_+|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	2.24964e-43
NZ_CP025281.1|WP_058001875.1|1458449_1459598_-|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP025281.1|WP_002779351.1|1452871_1453804_-|formate-dehydrogenase-subunit-gamma	gnl|CDD|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	3.35162e-86
NZ_CP025281.1|WP_002790273.1|1476089_1476539_-|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.36734e-47

Protein sequences

>NZ_CP025281.1|WP_058001873.1|1461936_1463127_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKASKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPEFKVENNTCVKTFTGSLMSEGSDTLVPVENIRIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVAPKECEILENESLVDIIFMP
>NZ_CP025281.1|WP_002779489.1|1461486_1461933_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP025281.1|WP_002807291.1|1461264_1461486_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELKVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP025281.1|WP_058001874.1|1459721_1461263_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMSVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGKILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILVGEERIYRFEIPQDSAGTYWYHPHPHFTTSKQVFMGLAGAFVIKAKKDALSHLKERDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKPIFKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKENVELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP025281.1|WP_058001875.1|1458449_1459598_-|carboxynorspermidine-decarboxylase
MFYENIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEMSEIAHLSHHIVFNSLYQFDKFKSLCTNNSLGLRCNLEFSFAPKELYNPCGKYSRLGILSKDLENFDLSGVEGLHFHALCEESADALEAVLKVFEEKFGKWIKQMKWVNFGGGHHITKQGYDIQKIITLCKNFSDKYGVQVYLEPGEAVGWQSGVLVASVVDIVENEKRIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDFKENEFAYLLTGNTCLAGDVMGEYAFKEELKRGDRVVFLDQIHYSIVKNTTFNGIRLPNLMLLNSKNELEMVREFSYKDYALRN
>NZ_CP025281.1|WP_002779485.1|1457415_1458117_-|molecular-chaperone-TorD-family-protein
MDLEKLRLARSLYYQCLGELFVFSFSENRLCNLKAYLEAMQESLFDESLRTSFEILLRNLQDVQDLQAFYKEYDELFLALKNTIPMTFSYIEEGFENSKALLNVRQILAKSTIRRNEKIFKEAEDSVGFCFVLMSEFLKNKEDELAKALFEKVINQSIDEFLMLIFSNSKAKLYKEIANIAAQFIEFERYCFELEKPTIKPSKKVQNDLSRSEFLRREANKQRRSREKSQGIS
>NZ_CP025281.1|WP_002779484.1|1457249_1457441_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAIALGTASLLGGASVAFGQDEERKDLVRGKSKKKEVLYQRSANWEKYYMRAE
>NZ_CP025281.1|WP_079264011.1|1454445_1457250_-|molybdopterin-dependent-oxidoreductase
MSSMNETIKLNRRSFLKMAALSSLASPLLARSETLREANADELKEAYEGSQKIKSVCTACSVGCGIIAEVQNGVWLRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLIQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDKVDNAGTSLKALVVMGNGITSTAQQAKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVIDPLYESKEDQEILFELAKKLGFYEDFTKTLRDENGKIVWPENATREIASAVRSIGLNGWSPERLKKHTLNWDKFDEVTLEGKDELAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGENLLAKNAPINSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGAIWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDQIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQKAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELASEQKIKAGDMIWVHSPEGTKIHVRVKLNPGVAKDMIFLPFHFTGVMQGVDLTYNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGV
>NZ_CP025281.1|WP_002779352.1|1453800_1454442_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCSVACDEAHELPINIRRRRVITLNEGVQGKEVSTSISCMHCDDAPCAIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPESTNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHSRLQSRGYGIANPSQSIEWKIAYIGKERL
>NZ_CP025281.1|WP_002779351.1|1452871_1453804_-|formate-dehydrogenase-subunit-gamma
MKKILITLLSTFVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAIIAVLSAFALHYMVIGPKQFSHDGKKIYAFSLFERIFHFIAAISWVILVPTGFVMMFGATFGGGVFVRVCKNLHAFATILFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRLSAIIHNFLGIICAVFFGIHIYMAVFAIKGSIHSMVSGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP025281.1|WP_002780988.1|1464086_1464518_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NZ_CP025281.1|WP_002799307.1|1464510_1465401_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSISSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKYNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP025281.1|WP_002779495.1|1469978_1470956_-|hypothetical-protein
MKNIVFHSDGFGDLLVCFKALYAIKQLYPEYKLFLLTNGLMESDFLEKIPFIDEVLIYKDDFLEKIQSKNPVIFITTRRQGLYFKKLKFLNVQKCIVFPHLISIISKNLTTPLPFFRAKKHMSEIVLKLVRMINTRHFDKNFNQIDFSKIKNLLPYDARLSDNFFKQIDTKYEKIIGINAFSNNSEYRGFNFFIKDWIGLARQLSLKYPKFLFILLNFSTNSIQYNIDQNANLKVFCNNKNIASLVSISQKLDFLITVDTGNLHLCDILQIPTLAFTSSLAAYRFGGGSYGGRFDKLIVKPAWQKEYRKIYEIFTKKAENNLENL
>NZ_CP025281.1|WP_002790277.1|1471016_1472006_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDKVVGGIGSFAGAFRMPSGFKNPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKSVVAGIAEGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFEGLKLKFDDKIEGKNLIDVLLEPTRIYVRDFLTLKPYINALAHITGGGLVENLPRVLPRGMGAVIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSRVLENSDAFIIGEICINEGIVLE
>NZ_CP025281.1|WP_002790276.1|1472066_1472672_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDKYALELAQIFSKFHKKNLLKAEGKIDRKILGEIVFQNKEAKTILENFTHPKIRAQILEQMQILEQENKPFFVEIPLFFESGAYDGLGKVILIYAPKELSLKRIIQRDNLSLEAAKARLDSQIDIEEKLKKADFIIKNTGSYADFRQECVKVIQEISKGKM
>NZ_CP025281.1|WP_002779498.1|1472668_1473418_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHKKYDFEWEFYNNDGSTASMCGNGSRAAAHFAHHINGIKPHMAFLTGAGVIKANVDNNSVEVSLGKIKNIQDAFSECEKNWQLCDTGVPHLVHFCENLDEFDLKLCKQMREKYNANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIHNQARVIPKSGEELSFKFENEELFFKGKVRYCFEANYNFS
>NZ_CP025281.1|WP_002790275.1|1473392_1474124_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKRIIIFLSFYLLPLFGNSELKNGFGEEYYKLNVEQKRQIFFTKMNAMFDKSFEEIAKERAFVEAFFYDAYKNGLRNSNQNNLEKLINLKNKYRVENLYDFTEYKKRIQKIPKSMGIAQALVESAMGTSRFAREANNLFGEWTWGEKGLIPDLRYPDKKHKIRIFDSLQDSVDSYVLNLNRHFAYEEFRNERAKFESEGKEITGLEAIKTLDSYSERKGYYINIVTKIIQRYDLERYDTPKSF
>NZ_CP025281.1|WP_002781001.1|1474130_1475168_-|ATP-binding-protein
MKVLNFFYENHPKFEISYERKVQIPLCNIIIKGPKFSGKKTLIFNYLSQFKPNEILFLNLYDTRFENQSLGHLSNFLEKNVQIKFLCIYNVEFALNLQDIKIPIIISTDKKDLHIEGFQELELDYFDFEEFVSISRKNLPINNLVGLFLQSGRSKLGEKNTLLRQNFNTLELEILKYLALNLGQQISISKLFLELKKKLKTSKDSVYHTIKELENTYIIHPISHDEKKLQKIYFRDFGLRNNLCIQKDFAHLFENLILNELFKFKQEFFYNKFFTFYSKVSKIAYISSPTLDIDLIKLRAKKILSKSLELGIFHVVFITLSSEDSFFEQGVKFEVLPFDKFSLGF
>NZ_CP025281.1|WP_002799969.1|1475281_1475866_-|DUF2974-domain-containing-protein
MFKVLTHNIFQKECVIIGKFEPLMAFYFIKRFDLLAHINEDYLDSRGGFRASLFQNKENKEFILAIAGSDLRPLKFDIGDLISDFILLNGKIPKKQFDSLLKFYTLIKKEFCFGKITLVGHSLGGHLAQLFVLDFALEVQNIYTFQAPGIAKKILKDIKNEAYIQKISYHFHTCGDFKKMHGINLILFKICILK
>NZ_CP025281.1|WP_002790273.1|1476089_1476539_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFYSIHEYTEKAYEEMAELFDNCAERALQLGEKAITCQKTLMENAKSPKVEKDCFTPVEVMELIKKDYEYLLAEFKKLNEEAEKASDTTTAAFAQENIAKYEKSLWMLASVLQNTCKM

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025281_1	1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT	1463283-1463312	30	MN530981	Campylobacter phage DA10, complete genome	13943-13972	0	1.0
NZ_CP025281_1	1.11|1463285|29|NZ_CP025281|PILER-CR	1463285-1463313	29	MN530981	Campylobacter phage DA10, complete genome	13943-13971	0	1.0
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	MN530981	Campylobacter phage DA10, complete genome	6985-7014	1	0.967
NZ_CP025281_1	1.4|1463481|30|NZ_CP025281|CRISPRCasFinder,CRT	1463481-1463510	30	MN530981	Campylobacter phage DA10, complete genome	19421-19450	1	0.967
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	MN530981	Campylobacter phage DA10, complete genome	6986-7014	1	0.966
NZ_CP025281_1	1.4|1463481|30|NZ_CP025281|CRISPRCasFinder,CRT	1463481-1463510	30	MT710307	Salmonella phage pSal-SNUABM-04, complete genome	189179-189208	5	0.833
NZ_CP025281_1	1.11|1463285|29|NZ_CP025281|PILER-CR	1463285-1463313	29	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	218689-218717	5	0.828
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	35399-35427	5	0.828
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	35398-35427	6	0.8
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	NZ_CP047653	Bombella sp. KACC 21507 plasmid unnamed1, complete sequence	42380-42409	6	0.8
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	NZ_CP049810	Acinetobacter pittii strain A1254 plasmid pA1254_4, complete sequence	2367-2396	6	0.8
NZ_CP025281_1	1.11|1463285|29|NZ_CP025281|PILER-CR	1463285-1463313	29	CP006878	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence	31816-31844	6	0.793
NZ_CP025281_1	1.11|1463285|29|NZ_CP025281|PILER-CR	1463285-1463313	29	MT334653	Buttiauxella phage vB_ButM_GuL6, complete genome	59360-59388	6	0.793
NZ_CP025281_1	1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT	1463283-1463312	30	MW117965	Synechococcus phage S-H38, complete genome	9860-9889	7	0.767
NZ_CP025281_1	1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT	1463283-1463312	30	CP006878	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence	31816-31845	7	0.767
NZ_CP025281_1	1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT	1463283-1463312	30	MT334653	Buttiauxella phage vB_ButM_GuL6, complete genome	59359-59388	7	0.767
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	KX879602	Liberibacter phage HHCA1-2, complete genome	553-582	7	0.767
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	KX879602	Liberibacter phage HHCA1-2, complete genome	37264-37293	7	0.767
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	HQ377372	Liberibacter phage SC1, complete genome	541-570	7	0.767
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	JF773396	Liberibacter phage FP2, complete genome	3458-3487	7	0.767
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	JF773396	Liberibacter phage FP2, complete genome	5736-5765	7	0.767
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	NC_019550	Liberibacter phage SC2, complete genome	553-582	7	0.767
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	NC_019550	Liberibacter phage SC2, complete genome	37272-37301	7	0.767
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	KX879600	Liberibacter phage SGCA5-1 clone contig1 genomic sequence	295-324	7	0.767
NZ_CP025281_1	1.4|1463481|30|NZ_CP025281|CRISPRCasFinder,CRT	1463481-1463510	30	NZ_AP017310	Leptolyngbya sp. NIES-3755 plasmid plasmid2 DNA, complete genome	85539-85568	7	0.767
NZ_CP025281_1	1.7|1463679|30|NZ_CP025281|CRISPRCasFinder,CRT,PILER-CR	1463679-1463708	30	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	378264-378293	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	LT906557	Escherichia coli isolate E. coli RL465 genome assembly, plasmid: II	51269-51298	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	NZ_CP014328	Halocynthiibacter arcticus strain PAMC 20958 plasmid unnamed, complete sequence	44970-44999	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	NZ_CP028198	Salmonella enterica subsp. enterica serovar Concord strain CFSAN018747 plasmid pGMI14-002_2, complete sequence	33728-33757	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	NZ_CP042620	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence	68132-68161	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	NZ_CP034790	Escherichia coli strain ECCNB20-2 plasmid pTB423, complete sequence	71742-71771	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	NC_010697	Erwinia tasmaniensis Et1/99 plasmid pET49, complete sequence	28001-28030	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	HG796577	Uncultured bacterium plasmid pRGI01704	1325-1354	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	LN881734	Escherichia phage slur11, complete genome	3144-3173	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	LN881737	Escherichia phage slur13, complete genome	24965-24994	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	LN881726	Escherichia phage slur02, complete genome	85085-85114	7	0.767
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	LN881729	Escherichia phage slur04, complete genome	166769-166798	7	0.767
NZ_CP025281_1	1.11|1463285|29|NZ_CP025281|PILER-CR	1463285-1463313	29	MW117965	Synechococcus phage S-H38, complete genome	9861-9889	7	0.759
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	KX879602	Liberibacter phage HHCA1-2, complete genome	554-582	7	0.759
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	KX879602	Liberibacter phage HHCA1-2, complete genome	37265-37293	7	0.759
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	HQ377372	Liberibacter phage SC1, complete genome	542-570	7	0.759
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	JF773396	Liberibacter phage FP2, complete genome	3459-3487	7	0.759
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	JF773396	Liberibacter phage FP2, complete genome	5737-5765	7	0.759
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	NC_019550	Liberibacter phage SC2, complete genome	554-582	7	0.759
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	NC_019550	Liberibacter phage SC2, complete genome	37273-37301	7	0.759
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	KX879600	Liberibacter phage SGCA5-1 clone contig1 genomic sequence	296-324	7	0.759
NZ_CP025281_1	1.12|1463351|29|NZ_CP025281|PILER-CR	1463351-1463379	29	NC_007772	Clostridium perfringens CPE str. F4969 plasmid pCPF4969, complete sequence	67197-67225	7	0.759
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	247539-247568	8	0.733
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	247579-247608	8	0.733
NZ_CP025281_1	1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT	1463349-1463378	30	NC_007772	Clostridium perfringens CPE str. F4969 plasmid pCPF4969, complete sequence	67196-67225	8	0.733
NZ_CP025281_1	1.3|1463415|30|NZ_CP025281|CRISPRCasFinder,CRT	1463415-1463444	30	NZ_CP019039	Bacillus velezensis strain GH1-13 plasmid unnamed, complete sequence	38821-38850	8	0.733
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	NZ_CP018939	Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence	4717-4746	8	0.733
NZ_CP025281_1	1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT	1463745-1463774	30	NZ_CP018939	Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence	46905-46934	8	0.733
NZ_CP025281_1	1.11|1463285|29|NZ_CP025281|PILER-CR	1463285-1463313	29	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	350899-350927	8	0.724
NZ_CP025281_1	1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT	1463283-1463312	30	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	350898-350927	9	0.7

1. spacer 1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
gcacctgtttttgattgaacgaagcaacca	Protospacer
******************************

2. spacer 1.11|1463285|29|NZ_CP025281|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gcacctgtttttgattgaacgaagcaacc	CRISPR spacer
gcacctgtttttgattgaacgaagcaacc	Protospacer
*****************************

3. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

aaactttttacagctttgtagaatatataa	CRISPR spacer
aaactttttacagttttgtagaatatataa	Protospacer
*************.****************

4. spacer 1.4|1463481|30|NZ_CP025281|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

gaacctttagagtataacgataatcaagta	CRISPR spacer
gaacctttagagtataacgataatcaagtt	Protospacer
***************************** 

5. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

aaactttttacagctttgtagaatatata	CRISPR spacer
aaactttttacagttttgtagaatatata	Protospacer
*************.***************

6. spacer 1.4|1463481|30|NZ_CP025281|CRISPRCasFinder,CRT matches to MT710307 (Salmonella phage pSal-SNUABM-04, complete genome) position: , mismatch: 5, identity: 0.833

gaacctttagagtataacgataatcaagta-	CRISPR spacer
gaacctctggagtataacgataat-acttac	Protospacer
******.*.*************** *  ** 

7. spacer 1.11|1463285|29|NZ_CP025281|PILER-CR matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 5, identity: 0.828

gcacctgtttttgattgaacgaagcaacc	CRISPR spacer
tcacctgtttttgattgagcgaatagacc	Protospacer
 *****************.****  .***

8. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to NC_018687 (Bacillus thuringiensis MC28 plasmid pMC189, complete sequence) position: , mismatch: 5, identity: 0.828

aaactttttacagctttgtagaatatata	CRISPR spacer
ggaattttcatagctttgtagaatatata	Protospacer
..* ****.*.******************

9. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NC_018687 (Bacillus thuringiensis MC28 plasmid pMC189, complete sequence) position: , mismatch: 6, identity: 0.8

aaactttttacagctttgtagaatatataa	CRISPR spacer
ggaattttcatagctttgtagaatatatat	Protospacer
..* ****.*.****************** 

10. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP047653 (Bombella sp. KACC 21507 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
atgtaattttagtaaaaaaacttgacagac	Protospacer
* .******.******** ********.*.

11. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP049810 (Acinetobacter pittii strain A1254 plasmid pA1254_4, complete sequence) position: , mismatch: 6, identity: 0.8

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
aaataatttcagtaaacacagttaatcaag	Protospacer
**************** *** **.*. ** 

12. spacer 1.11|1463285|29|NZ_CP025281|PILER-CR matches to CP006878 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence) position: , mismatch: 6, identity: 0.793

gcacctgtttttgattgaacgaagcaacc	CRISPR spacer
gggtccgtttccgattgaacgaagcaacc	Protospacer
* ..*.****..*****************

13. spacer 1.11|1463285|29|NZ_CP025281|PILER-CR matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 6, identity: 0.793

-gcacctgtttttgattgaacgaagcaacc	CRISPR spacer
tgta-ttgtttttgattgaatcaagcaacg	Protospacer
 *.* .**************. ******* 

14. spacer 1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT matches to MW117965 (Synechococcus phage S-H38, complete genome) position: , mismatch: 7, identity: 0.767

gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
atagaagtttttgattgaaggaaacaacca	Protospacer
..*   ************* ***.******

15. spacer 1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT matches to CP006878 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence) position: , mismatch: 7, identity: 0.767

gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
gggtccgtttccgattgaacgaagcaaccg	Protospacer
* ..*.****..*****************.

16. spacer 1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 7, identity: 0.767

-gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
tgta-ttgtttttgattgaatcaagcaacgc	Protospacer
 *.* .**************. *******  

17. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to KX879602 (Liberibacter phage HHCA1-2, complete genome) position: , mismatch: 7, identity: 0.767

aaactttttacagctttgtagaatatataa	CRISPR spacer
tggcttttttcagctttgaagaatatagca	Protospacer
 ..****** ******** ********  *

18. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to KX879602 (Liberibacter phage HHCA1-2, complete genome) position: , mismatch: 7, identity: 0.767

aaactttttacagctttgtagaatatataa	CRISPR spacer
tggcttttttcagctttgaagaatatagca	Protospacer
 ..****** ******** ********  *

19. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to HQ377372 (Liberibacter phage SC1, complete genome) position: , mismatch: 7, identity: 0.767

aaactttttacagctttgtagaatatataa	CRISPR spacer
tggcttttttcagctttgaagaatatagca	Protospacer
 ..****** ******** ********  *

20. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to JF773396 (Liberibacter phage FP2, complete genome) position: , mismatch: 7, identity: 0.767

aaactttttacagctttgtagaatatataa	CRISPR spacer
tggcttttttcagctttgaagaatatagca	Protospacer
 ..****** ******** ********  *

21. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to JF773396 (Liberibacter phage FP2, complete genome) position: , mismatch: 7, identity: 0.767

aaactttttacagctttgtagaatatataa	CRISPR spacer
tggcttttttcagctttgaagaatatagca	Protospacer
 ..****** ******** ********  *

22. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NC_019550 (Liberibacter phage SC2, complete genome) position: , mismatch: 7, identity: 0.767

aaactttttacagctttgtagaatatataa	CRISPR spacer
tggcttttttcagctttgaagaatatagca	Protospacer
 ..****** ******** ********  *

23. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NC_019550 (Liberibacter phage SC2, complete genome) position: , mismatch: 7, identity: 0.767

aaactttttacagctttgtagaatatataa	CRISPR spacer
tggcttttttcagctttgaagaatatagca	Protospacer
 ..****** ******** ********  *

24. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to KX879600 (Liberibacter phage SGCA5-1 clone contig1 genomic sequence) position: , mismatch: 7, identity: 0.767

aaactttttacagctttgtagaatatataa	CRISPR spacer
tggcttttttcagctttgaagaatatagca	Protospacer
 ..****** ******** ********  *

25. spacer 1.4|1463481|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_AP017310 (Leptolyngbya sp. NIES-3755 plasmid plasmid2 DNA, complete genome) position: , mismatch: 7, identity: 0.767

gaacctttagagtataacgataatcaagta	CRISPR spacer
gcccctttagagtattacgacaatcaaact	Protospacer
*  ************ ****.******.. 

26. spacer 1.7|1463679|30|NZ_CP025281|CRISPRCasFinder,CRT,PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 7, identity: 0.767

aatcaagagcgcataggaaaagatatatat	CRISPR spacer
cttcaagagagaataggaaaagatatagca	Protospacer
  ******* * ***************   

27. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to LT906557 (Escherichia coli isolate E. coli RL465 genome assembly, plasmid: II) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
aaataatttcggtaaaaacactaagggatt	Protospacer
**********.*********** .. .* *

28. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP014328 (Halocynthiibacter arcticus strain PAMC 20958 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
agtcgttttcagaaaaaacacttgtcaaat	Protospacer
*. .. ****** *********** *****

29. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP028198 (Salmonella enterica subsp. enterica serovar Concord strain CFSAN018747 plasmid pGMI14-002_2, complete sequence) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
aaataatttcggtaaaaacactaagggatt	Protospacer
**********.*********** .. .* *

30. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP042620 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
aaataatttcggtaaaaacactaagggatt	Protospacer
**********.*********** .. .* *

31. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP034790 (Escherichia coli strain ECCNB20-2 plasmid pTB423, complete sequence) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
aaataatttcggtaaaaacactaagggatt	Protospacer
**********.*********** .. .* *

32. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NC_010697 (Erwinia tasmaniensis Et1/99 plasmid pET49, complete sequence) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
tgagtatttcagtaaaaacacttaacgact	Protospacer
 .*  ******************.**.* *

33. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to HG796577 (Uncultured bacterium plasmid pRGI01704) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
cagacatttcagttaaaacactagacaact	Protospacer
 *.  ******** ******** ***** *

34. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to LN881734 (Escherichia phage slur11, complete genome) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
aaggtaaatcagtaaatacacttgacaaaa	Protospacer
**.  *  ******** ************ 

35. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to LN881737 (Escherichia phage slur13, complete genome) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
aaggtaaatcagtaaatacacttgacaaaa	Protospacer
**.  *  ******** ************ 

36. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to LN881726 (Escherichia phage slur02, complete genome) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
aaggtaaatcagtaaatacacttgacaaaa	Protospacer
**.  *  ******** ************ 

37. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to LN881729 (Escherichia phage slur04, complete genome) position: , mismatch: 7, identity: 0.767

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
aaggtaaatcagtaaatacacttgacaaaa	Protospacer
**.  *  ******** ************ 

38. spacer 1.11|1463285|29|NZ_CP025281|PILER-CR matches to MW117965 (Synechococcus phage S-H38, complete genome) position: , mismatch: 7, identity: 0.759

gcacctgtttttgattgaacgaagcaacc	CRISPR spacer
atagaagtttttgattgaaggaaacaacc	Protospacer
..*   ************* ***.*****

39. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to KX879602 (Liberibacter phage HHCA1-2, complete genome) position: , mismatch: 7, identity: 0.759

aaactttttacagctttgtagaatatata	CRISPR spacer
tggcttttttcagctttgaagaatatagc	Protospacer
 ..****** ******** ********  

40. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to KX879602 (Liberibacter phage HHCA1-2, complete genome) position: , mismatch: 7, identity: 0.759

aaactttttacagctttgtagaatatata	CRISPR spacer
tggcttttttcagctttgaagaatatagc	Protospacer
 ..****** ******** ********  

41. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to HQ377372 (Liberibacter phage SC1, complete genome) position: , mismatch: 7, identity: 0.759

aaactttttacagctttgtagaatatata	CRISPR spacer
tggcttttttcagctttgaagaatatagc	Protospacer
 ..****** ******** ********  

42. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to JF773396 (Liberibacter phage FP2, complete genome) position: , mismatch: 7, identity: 0.759

aaactttttacagctttgtagaatatata	CRISPR spacer
tggcttttttcagctttgaagaatatagc	Protospacer
 ..****** ******** ********  

43. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to JF773396 (Liberibacter phage FP2, complete genome) position: , mismatch: 7, identity: 0.759

aaactttttacagctttgtagaatatata	CRISPR spacer
tggcttttttcagctttgaagaatatagc	Protospacer
 ..****** ******** ********  

44. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to NC_019550 (Liberibacter phage SC2, complete genome) position: , mismatch: 7, identity: 0.759

aaactttttacagctttgtagaatatata	CRISPR spacer
tggcttttttcagctttgaagaatatagc	Protospacer
 ..****** ******** ********  

45. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to NC_019550 (Liberibacter phage SC2, complete genome) position: , mismatch: 7, identity: 0.759

aaactttttacagctttgtagaatatata	CRISPR spacer
tggcttttttcagctttgaagaatatagc	Protospacer
 ..****** ******** ********  

46. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to KX879600 (Liberibacter phage SGCA5-1 clone contig1 genomic sequence) position: , mismatch: 7, identity: 0.759

aaactttttacagctttgtagaatatata	CRISPR spacer
tggcttttttcagctttgaagaatatagc	Protospacer
 ..****** ******** ********  

47. spacer 1.12|1463351|29|NZ_CP025281|PILER-CR matches to NC_007772 (Clostridium perfringens CPE str. F4969 plasmid pCPF4969, complete sequence) position: , mismatch: 7, identity: 0.759

aaactttttacagctttgtagaatatata	CRISPR spacer
cactgttttacagttttgtagaatctatc	Protospacer
 * . ********.********** *** 

48. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 8, identity: 0.733

aaactttttacagctttgtagaatatataa	CRISPR spacer
agctaatggacagctttttagaatatataa	Protospacer
*. .  *  ******** ************

49. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 8, identity: 0.733

aaactttttacagctttgtagaatatataa	CRISPR spacer
agctaatggacagctttttagaatatataa	Protospacer
*. .  *  ******** ************

50. spacer 1.2|1463349|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NC_007772 (Clostridium perfringens CPE str. F4969 plasmid pCPF4969, complete sequence) position: , mismatch: 8, identity: 0.733

aaactttttacagctttgtagaatatataa	CRISPR spacer
cactgttttacagttttgtagaatctatct	Protospacer
 * . ********.********** ***  

51. spacer 1.3|1463415|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP019039 (Bacillus velezensis strain GH1-13 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ttattttcaagtgaaaaggaataaaatgtt	CRISPR spacer
aactattcaattgaaaaggattaaaatgaa	Protospacer
   * ***** ********* *******  

52. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP018939 (Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence) position: , mismatch: 8, identity: 0.733

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
ttagtttttcagtaaaaacactagaaaaaa	Protospacer
  *   **************** ** *** 

53. spacer 1.8|1463745|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_CP018939 (Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence) position: , mismatch: 8, identity: 0.733

aaataatttcagtaaaaacacttgacaaat	CRISPR spacer
ttagtttttcagtaaaaacactagaaaaaa	Protospacer
  *   **************** ** *** 

54. spacer 1.11|1463285|29|NZ_CP025281|PILER-CR matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 8, identity: 0.724

gcacctgtttttgattgaacgaagcaacc	CRISPR spacer
agacctgtttatgatagaacgaagcttgt	Protospacer
. ******** **** *********   .

55. spacer 1.1|1463283|30|NZ_CP025281|CRISPRCasFinder,CRT matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 9, identity: 0.7

gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
agacctgtttatgatagaacgaagcttgtg	Protospacer
. ******** **** *********   ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	903936 : 911201	12	Campylobacter_phage(85.71%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP025281|903936:911201|DBSCAN-SWA
AATGGCTTTACCTTCAATGGGACATACAGCACCCGCAACAGAAAATGTTAAGTTAAAACAATCAATATACGAAACGATTATTAAAATTGGAGCTACTGAAACACCAATTTTAAATAAAATAGGCACTTCAAAGGTTACAAATCCTTTAACCCATAGTTGGCTTACAGACACTTTTGAAGAACCAAAAAAGAATGCAAATTTGGAATTGAGCAAATTTGTAGGGGAAACAAAAAACACAGCTCAAAAAACTACAAATGCTACTCAAATATTCATTACCGAAGCCATGGTATCAAAAGCTTTATTAAAAGCAAATCAATATGGTGGAAATGAAATGGAGTATCAAATAGGCAAAAAAACCAAAGAACATAAAATGGATATGGAATATGCTTTATTTGGTCTAGGCAGAGATAGTGATGTAAAAAAATCAGTTTTCAAAGATTATGTTCAAGCACAAGAAGCAACAAGTGGAGAAATGGCTGGACTTTTTCATTATATCGCTAAAGGAAAAGATAGCTTTGCTGATGGAAAGCGTGGAAATGTATTAGCTTTTGATGAAACAGGAGATTGGAGCGGAACTGCAACAGAACTAACAGAAGATAAACTTAATCAAATTTTGCAAACCATTTGGAATAGCGGAGTTACGCCTAAAGATGTCTTTTTAGGAGCTGACTTAAAAGGAGCTATCAATAAATTTGCTACAAGAATTTTAGGCAATGAAACAAAACTAGCAGGACAAGTAGTAAGCCTTGAAACAGATTTTGGAACGGTAAATTTCCATATGCATAGATTATTAAGCCCTAAATATGGTTTGGGTGATGTTTTAATTGCTGGAGATTTTGAGTATATGAAACATGGGCTTTATATTCCTACTATGATTGAAGATGTTCCAACTGATATTACTGCAAAAGCAAAAAGATTTTATACGCAAAGCACTTTAGAAGTAAGAAATGCTGATGCTTTTGCTATAGGCGTGGGATTAACTAGTGGAAATAATGAAAAGGCTAAAGCAGTTTTAAAAGCAGCAAAAGGTGCATAATGCTTTGTATTATGGCTAAAAAACTCATTATCGCTAAAGTTAAAAATTCTTACAAAATGATAGAAGATGATGAAGTTTTGAAAGCCTATTTTATGGAAGCATTTTATTATATTTTATCAAAATGTGTTCCTAGTGTTCTTTTAAAAAATGTAGAACAAGGCGAAAAAGTTTTCAGGCAAGTTAGAAATAATCATTTTTTGATTATTCCTGATGAGCCTGATTTTGACAATGAAAAAGAACATTTAATGATAGATGAAGCACTTAGTTTTGCTGTGATTAATTATGTTTGTTATTTGATTACAAGATGCGAAGAAAAAGACTTTCTGGCATTATGTGACAAGATAATTTATGAGTATATAGCTAATGATGGCAAGGAGCTTGATGATGAAAGAACATGGTTGTGAGTGTAATTTTACAAATAAATTTAATCGAGCTTTGAGTTATAAAGACTATGTGCAAAGTATAAATAGTGCTGATTTTATAGCTTATTTAGATGATAAAAAATGGCTTTTAGCCATGGATGATCTGCTTTTCTTTTGTGAAAAGAGAATTAAAGATAGTGATTATTATGAAGGTTAAAAATGGGAACAAGCTTAAATGAGTTAAAAACAGGTAGAGAAAAACTTGAGATTATAAATCAAGTTTTGTCAAGAATTTCAAATGTTGCTACTGCTTTAGATAATACTAGAATAGAAGAAATTGTAGGACTAAAAGAACAAGTTAATAATTTTTATAATCAAATTTTAGAGCTTAAAAATTTAGTTGTAAAAAATAGCGAGCTTACTCAAAGCAATACTGATTTTACTAAAAACAAAAGAAATGAAATTGAAAAAATAAGCAATGAAATAAAAAATACTTTAAACAATATAGAAGAAATCTACAACAACATTATAAAATCAGAAAAAGATATAAGCAATGGAGTTAATTTTGTTAAAGACAAATATCCTGAACTTAATGAGTTTAATAAAAATTTTGAAATTATAAAAATAAAACTTGAAGAATATTACAACATAGCTGTTGATTTTAATGCAGGTCTTAAAAAAATAGAGGAAAACAAAAATCTTACCAAATCCTATTTAGATTTATCCATAGAACTTAAGCAACAAATCTTACAAGAATTAGAACACGCACAAAGTATTAAAGAAGATTTGCATTCTAATATAGAGCTTGTAAATAAACTTGTTTCAAATATCGTGGCAACAAAGAATGAGATTATATCTATAACCAATAATTTTAAAAATGTAAAATCAGAAGTTCAAAATATAGTTAATCATGCTGAAGCAACAATAAAGCTTAAAATAAACACTATTCTTTTTGAAAATCAAAGATTAAATCAAAATATGATTGATCTACTAAAGCGTTGCGAGAAGCTAGAGGATGAAATAGTAGGAAAATATGAAGATATTTTAAAAATAGAAGATCTTATAAACTCATCAACTGGAATTATAAATGATTTGAGAGAAGCAGTAAAACAAAGCGAACAAATAAGCGAAGATATGAGAAGTTTTACAGCTATCATCAAAGACTTTAAAACAGAAATTTCTAATCTAAAAGCAGATTTAGAAAGCTATGGCGAAAGATTAAAAGGACAACTTGATTTAAAATTAGCACAAGCAAACTCAAGTGTAGATGCTAAGATTTCAAGCATTGAGACTCTAAAAAATCAAATTGAAGCATATGTAGAAGCTAATAAAAATACCGTAGATGTGGCTTTAGCTAACTTTATAGAAAGATCTAAAATAGCTAATGAAGATTTAGGAAGATTGGCTGAAGTAGCAAGAACAGAACTCGCTAATGATAAAACAGCTATTGAAAGCTATTTGCTAGAACTTAAAAAAAGTATCGTTGATGAAATGAAAGAAGTGTCAAATAGCGTTACAGATGAAACAAGTGGAATATTAGCTCAAAAAAACCAAATAGAGCTTATCATGGCACAAGGAAAATCAGATTTAGATACTTTAATCAACAACTTTAACTCAAATTATCAAAACAAACTTAACGAATTTAATTCTAATACTAATGAGAAATTAGCTTCTATTAATTCACTCAGTGAAGAAAGTATAACAAATATACAAAATAAAACAGATGAAAATATAGGCAGATTAGATACAGCCAGCGAAGAAAAACTAGCTAAATTTGATGAAATTATAAAGGATAATTTGGGTGGAATTTATTCTCACATTTTTTCAATCGAAAATGTTTTATTTGATAAAAAAATAATTAAATTAAGTTATAAGGAGTAAAGAATGGCGGACTTAGAGCAAGTTGTAAATGATTTAAATTTGGCATCACAAAGCTTACAAGAGTTAAGAGAAAAATATGATGGTGCTTTAGATTTACTAGATAATAAAAATACAGAAATAACAGGTGCGCTAGATAGTGCAAAATCTGATGCGTTACAAGAAATACAAACTATAAGCGATACAGCTACAAGTCAAATTTCGCAGTTAAAAGACACATCCTTAAATTTGGTCAACGAAGCTAAAAATACAGCTACAACTGAAATATCAAATAAAAAGGAAGAGCATAAACAAGAGTTAGAAACTAAGAAGAATGAATATATTAATGAAATTGATGCAAAAGCTAATGAGTATAATCTTGCCAATATTAATGCGCAAGTTCAAGCTATGGATACCAAAATAACCGAGCAGATCAATGGTGCAAAAACGGAATTAAATTCGAAAATAGACAATAAGGTAACAAAAACTGGAAATGAAACTATAGCAGGCGTTAAGACATTCTCTAGTTCAATAGTAATACCAAATGCAACTGCCAATAACCATGCGACAAATTTAGGTCAATTAAATGGAAAAGTTGCAAAAACTGGAGATGAAACTATAGCAGGTGTAAAAACATTCTCAGTACCACCTGTATCAGCAACTAATCCTACTGCTAACAATCAAGTAGCAAACAAATCATATGTAGATACAGTTGGAAATAGCAAAGTTGCATTAAGCGGAAATCAAACTATAGCAGGTGTAAAAACATTCTCAGTACCACCTGTATCAGCAACTAATCCTACCGCTAACAATCAAGTAGCAAACAAATCATATGTGGATTATGGCGGCGGAATTAAGAACTTAGGAAATCAAACAGCACCGAAAATAGATTTAAGACAAGCTCAGCATTTTATCTTAACAATGACAGCCAGAGGAGCTATTGGTATAGCAAATTGGGGTGGAGCAGGTAAAAGTGGAACTATCACTGTCAATAATGCTCAAAATATCACTGCTTTTTCGGCACCTTTTAAATTTAGAGTAGCTCAAAGTGGATTTAGTGGAACTGAGACCTTTGCTTATTTTTGCATAGCAGCAAATAATATAAGATTAGTAAGGACTTAAGATGACTAGCGTACTATTATCACAAAGCCTTCATGCGATAAGCATAGGTGGAAAAGATGAGTTTTTTGCAAATAAGGATTTATCCATTCCTGTAATAAACACAAATAAAGCTTTAAACGCTAGTAAAAAATATTATTTAATTTTTGAATGTGAATTTGTTAAAAGTTTTAGCTATAAATCAGCCACTCAAGGAAGGGGAATATTTGTAGATGATAAGCTTTTCACGACAGTTGTGTCAACCAGAAGCGGAACCAAAGGACAAAAAATTACATATCAAGGATGGGTAAAAGGAAGCAAAATAAAACATGTTAATCTTGATGTAAACTGGACTTATTCTCCAGCCTCACAAAATCATATAAAAACCACTAAATTTGAACTTTATTACAACTAAAGGAGAATAAATATGTTTTACGATATTGAAAATCAGACTTTGAAATATGACAATATTTTTTACAAAAATGTCAAGTTGCAAACTCAAGAAGGTGAAATTGATGCACAGGATACTTATTTCTTAAGTGCTTGCGATGATGGGCTTTTAAAAGAGCTCGGTTTTGCTAAAGTTAAAGAAGAAGAAGCGCCAAGCTTTAATGAAAAAACACAGAAGCTTAACCAAGTTCAAAATTACGATGAAAAAAGTAATCTTTATATTATTTCTTACGAGATTAAAGAAAAAACCTTAGAAGAGTTAAAAGAATTAAAATTAGAAGAGTTAAAAGCAATAAAAGAAGAAAAGCTTTTATTTATGCCTTTTAAAAATACTACATTTCAAATTGATACTGAAGCAAAAATTAATATTAGCGGAAAAGTTAGCGAGATAATGTTAGCAAATCTCAATAATACTCCTTTGGAAAATATTGCTTGGATTGATAAAGATAATAAAATCATTACATTTAACAAAGAAGAATTTTTAGAATTTGGGGTTGGTATCGCTAAATATACTGAAAGTATTATTTTTAAAAATGATGAACTAAGAAATAAAGTGAAAAATGCCACATCTTTAGAAGAATTAAATTTAATTGCATGGGAGAGTGAAAAATGAGTACTGAAAATATAATAAAAGAAGGTGCTATACTCGGTTCTTTAAGTGGATCTGCATTATTAGGATTGATGGTTTTTGTCTTAGCTGGGATTGCATGGCATTTATATAAAACTTTACATAAAGAAGCTGGGGAAAGAACCAAAGAACTTATAAGTGAAACCAAAAATACCAATGTTCTTATTAGAGAACAAATTGCAGTATCCAGAGCAAGCAATGATAGCTTAATCAAATTTATACAAACGCATTGCTCTAAAACTAACGATAAGCTAGAAGCTATAGAAACAGATCTTATGCGAATGGATGAAAGGCTTGTTAAGCTTACTCAAATAAGAAATGATGAGTTAAGAATGATTTATAAAAGAAAGGAAAACGAATGAAAATTGCATTTTATAAAGTTAAAGAAAATGACAAATCTACTTTTCTTGATAAAGCAATAGCTTTTTTTACTTCATCTTGGAAAGAAAGATTAAATGGAGATTTTTTAAATTCCTATTCTCACTGTGAAATAATCTTAGACAATTTAATGATTAGCTCAAGTCCTAGAGATAAAGGAGTAAGAATAAAAGAATTTAAAGACAGTGGCAGATGGGATTTTATAGAAATCAATGATATAAATGAGACAAAAATAAAAGAATTTCTTTACTCTCAAATAGGAAAAAAATATGATTTTTTAGGAATTTTGGGCTTTTTCACATTCACAAAAGATAGTGAAGATAAATGGTTTTGCTCTGAAATCATAATAAGAGCGTTGCAAATAGGCGGCTTGGTTAAGCTAGGAGATATGAATGCAGGAAGCTCAAGTCCTAATAGATTATATAAAAAACTAAAGGATGCAAATGAAAATTAAAATCATTAGAAGATATACTGGAAAAACTTGCGTTATAGGTAAATTTAAGGTTTTAGATGATGAAGAAAAAATTCTTTTTGAATGTTTTTCTTTGGAAGAAGACAAAGAAGGTTTAGAAAGTGGCAAAGATTTAAGAATACCTGAAGGAAATTATAATTTAAAAAGACATAGTCCTTCACGATTTGAAAACACTTTAAGAAGTATCACAAAAAAAGATGATGATACAATGATAAATGTTTATAATGATGATGTGCCATCAAGTCGTGCAATTTTAATACACTGGGGAAACACTAACAAAGACACACAAGGTTGTATCTTGCTGGGGCATACTAAAGATAATAATAATGAAAGTATAGGTCAAAGCAGGCAGGCTTGCAAAGAATTTTACGATTTAATGTATAAGCAAGACTTATCAAAAATAAAACTTGAAATCGTAAATGATTTAGCATGAGCAACTTAATATCATTTGCTTTAAGCTTCTTTAGCGGAGACAAAAAGCTTTATATTGCTTTAGGCTTGTCTTTTATTTTGTTAGGATATTTTTATCTAAGACTTGACAGCACAAAGGCCAAATTAGAAAAAAGTCAAAGTGATTTAGCTTTGGCTTTAAAAGTCAATGAAAATAATCAAGAAAAATTAAAGGAATTAACTAAAATTCACAACGCAGAATTAAAGGCTTTAAATGAAGCAAATAATCAAAAAAATGAAGTTCAAAAAAAGGTGCAATATGTCAAAGAATATATTTATAAAAGCAATGAAAATAATATCACTAAGCTTTTTAACAATGTGGTTGATAGGTTGTGGGATGCAAACTCAACAAGTGGTAACAAAAATAGAAATTCAAAAAGTGAAAATACCACAAGAGCTACTAACATTAAGTCCTCTTGAAAAGCCAAAGGCAAAAAATGAACTAGATATTTTAAATGCTTATTCTATGCTTTTTTACAAATACAAACAGTGTGAAATTCAGATAAGCAAAATAAAGGAGCTAAATAATGAGTAA

Protein sequences of DBSCAN-SWA_1

>NZ_CP025281|903936:911201|908715_909351_+|WP_101348766.1|DBSCAN-SWA
MFYDIENQTLKYDNIFYKNVKLQTQEGEIDAQDTYFLSACDDGLLKELGFAKVKEEEAPSFNEKTQKLNQVQNYDEKSNLYIISYEIKEKTLEELKELKLEELKAIKEEKLLFMPFKNTTFQIDTEAKINISGKVSEIMLANLNNTPLENIAWIDKDNKIITFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATSLEELNLIAWESEK
>NZ_CP025281|903936:911201|908313_908703_+|WP_101348765.1|DBSCAN-SWA
MTSVLLSQSLHAISIGGKDEFFANKDLSIPVINTNKALNASKKYYLIFECEFVKSFSYKSATQGRGIFVDDKLFTTVVSTRSGTKGQKITYQGWVKGSKIKHVNLDVNWTYSPASQNHIKTTKFELYYN
>NZ_CP025281|903936:911201|904970_905375_+|WP_072238510.1|DBSCAN-SWA
MLCIMAKKLIIAKVKNSYKMIEDDEVLKAYFMEAFYYILSKCVPSVLLKNVEQGEKVFRQVRNNHFLIIPDEPDFDNEKEHLMIDEALSFAVINYVCYLITRCEEKDFLALCDKIIYEYIANDGKELDDERTWL
>NZ_CP025281|903936:911201|910187_910649_+|WP_101348768.1|DBSCAN-SWA
MKIKIIRRYTGKTCVIGKFKVLDDEEKILFECFSLEEDKEGLESGKDLRIPEGNYNLKRHSPSRFENTLRSITKKDDDTMINVYNDDVPSSRAILIHWGNTNKDTQGCILLGHTKDNNNESIGQSRQACKEFYDLMYKQDLSKIKLEIVNDLA
>NZ_CP025281|903936:911201|911003_911201_+|WP_072224811.1|DBSCAN-SWA
MQTQQVVTKIEIQKVKIPQELLTLSPLEKPKAKNELDILNAYSMLFYKYKQCEIQISKIKELNNE
>NZ_CP025281|903936:911201|907217_908312_+|WP_101348764.1|DBSCAN-SWA
MADLEQVVNDLNLASQSLQELREKYDGALDLLDNKNTEITGALDSAKSDALQEIQTISDTATSQISQLKDTSLNLVNEAKNTATTEISNKKEEHKQELETKKNEYINEIDAKANEYNLANINAQVQAMDTKITEQINGAKTELNSKIDNKVTKTGNETIAGVKTFSSSIVIPNATANNHATNLGQLNGKVAKTGDETIAGVKTFSVPPVSATNPTANNQVANKSYVDTVGNSKVALSGNQTIAGVKTFSVPPVSATNPTANNQVANKSYVDYGGGIKNLGNQTAPKIDLRQAQHFILTMTARGAIGIANWGGAGKSGTITVNNAQNITAFSAPFKFRVAQSGFSGTETFAYFCIAANNIRLVRT
>NZ_CP025281|903936:911201|910645_911086_+|WP_101348769.1|DBSCAN-SWA
MSNLISFALSFFSGDKKLYIALGLSFILLGYFYLRLDSTKAKLEKSQSDLALALKVNENNQEKLKELTKIHNAELKALNEANNQKNEVQKKVQYVKEYIYKSNENNITKLFNNVVDRLWDANSTSGNKNRNSKSENTTRATNIKSS
>NZ_CP025281|903936:911201|903936_904971_+|WP_004286856.1|DBSCAN-SWA
MALPSMGHTAPATENVKLKQSIYETIIKIGATETPILNKIGTSKVTNPLTHSWLTDTFEEPKKNANLELSKFVGETKNTAQKTTNATQIFITEAMVSKALLKANQYGGNEMEYQIGKKTKEHKMDMEYALFGLGRDSDVKKSVFKDYVQAQEATSGEMAGLFHYIAKGKDSFADGKRGNVLAFDETGDWSGTATELTEDKLNQILQTIWNSGVTPKDVFLGADLKGAINKFATRILGNETKLAGQVVSLETDFGTVNFHMHRLLSPKYGLGDVLIAGDFEYMKHGLYIPTMIEDVPTDITAKAKRFYTQSTLEVRNADAFAIGVGLTSGNNEKAKAVLKAAKGA
>NZ_CP025281|903936:911201|905355_905550_+|WP_044600670.1|DBSCAN-SWA
MKEHGCECNFTNKFNRALSYKDYVQSINSADFIAYLDDKKWLLAMDDLLFFCEKRIKDSDYYEG
>NZ_CP025281|903936:911201|905552_907214_+|WP_101348763.1|DBSCAN-SWA
MGTSLNELKTGREKLEIINQVLSRISNVATALDNTRIEEIVGLKEQVNNFYNQILELKNLVVKNSELTQSNTDFTKNKRNEIEKISNEIKNTLNNIEEIYNNIIKSEKDISNGVNFVKDKYPELNEFNKNFEIIKIKLEEYYNIAVDFNAGLKKIEENKNLTKSYLDLSIELKQQILQELEHAQSIKEDLHSNIELVNKLVSNIVATKNEIISITNNFKNVKSEVQNIVNHAEATIKLKINTILFENQRLNQNMIDLLKRCEKLEDEIVGKYEDILKIEDLINSSTGIINDLREAVKQSEQISEDMRSFTAIIKDFKTEISNLKADLESYGERLKGQLDLKLAQANSSVDAKISSIETLKNQIEAYVEANKNTVDVALANFIERSKIANEDLGRLAEVARTELANDKTAIESYLLELKKSIVDEMKEVSNSVTDETSGILAQKNQIELIMAQGKSDLDTLINNFNSNYQNKLNEFNSNTNEKLASINSLSEESITNIQNKTDENIGRLDTASEEKLAKFDEIIKDNLGGIYSHIFSIENVLFDKKIIKLSYKE
>NZ_CP025281|903936:911201|909347_909728_+|WP_002810252.1|DBSCAN-SWA
MSTENIIKEGAILGSLSGSALLGLMVFVLAGIAWHLYKTLHKEAGERTKELISETKNTNVLIREQIAVSRASNDSLIKFIQTHCSKTNDKLEAIETDLMRMDERLVKLTQIRNDELRMIYKRKENE
>NZ_CP025281|903936:911201|909724_910198_+|WP_101348767.1|DBSCAN-SWA
MKIAFYKVKENDKSTFLDKAIAFFTSSWKERLNGDFLNSYSHCEIILDNLMISSSPRDKGVRIKEFKDSGRWDFIEINDINETKIKEFLYSQIGKKYDFLGILGFFTFTKDSEDKWFCSEIIIRALQIGGLVKLGDMNAGSSSPNRLYKKLKDANEN

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004286856.1|903936_904971_+	DUF5309 family protein	A0A2I7SBK1	Pseudomonas_phage	2.0e-17	30.5
WP_072238510.1|904970_905375_+	hypothetical protein	NA	NA	NA	NA
WP_044600670.1|905355_905550_+	hypothetical protein	NA	NA	NA	NA
WP_101348763.1|905552_907214_+	hypothetical protein	NA	NA	NA	NA
WP_101348764.1|907217_908312_+	hypothetical protein	X2KLU0	Campylobacter_phage	2.2e-30	74.7
WP_101348765.1|908313_908703_+	hypothetical protein	NA	NA	NA	NA
WP_101348766.1|908715_909351_+	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	2.7e-86	87.7
WP_002810252.1|909347_909728_+	hypothetical protein	X2KXD5	Campylobacter_phage	5.5e-58	95.2
WP_101348767.1|909724_910198_+	hypothetical protein	NA	NA	NA	NA
WP_101348768.1|910187_910649_+	hypothetical protein	X2KRD2	Campylobacter_phage	7.8e-75	90.2
WP_101348769.1|910645_911086_+	hypothetical protein	X2KX19	Campylobacter_phage	1.3e-39	68.8
WP_072224811.1|911003_911201_+	hypothetical protein	X2KQZ7	Campylobacter_phage	4.1e-25	95.4