CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP025409	Paracoccus sp. BM15 plasmid pBM151, complete sequence	0 crisprs	NA	0	0	0
NZ_CP025408	Paracoccus sp. BM15 chromosome, complete genome	2 crisprs	csa3,DEDDh,cas3,WYL	1	3	6
NZ_CP025411	Paracoccus sp. BM15 plasmid pBM153, complete sequence	0 crisprs	NA	0	0	3
NZ_CP025410	Paracoccus sp. BM15 plasmid pBM152, complete sequence	0 crisprs	csa3	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025408_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025408_1

2312921-2313072

Orphan

Consensus_repeat	Method
CCCTCAGGGAGGAGGAGGAGG	CRT

3 spacers

The CRISPR arrays of NZ_CP025408_1

>merge|NZ_CP025408|1|2312921-2313072|CRT
CCCTCAGGGAGGAGGAGGAGGGCTGCCGCCGCAACAAGATCACCCTCAGGGAGGAGGAGGAAGGCGATCCTGCTATCTGTCGGCGACACCCTCAGGGAGGAGGAGGAGGAGAGGGTGCCGCCTAAACCCTTGCCCCAGGGAGGAGGAGGGGG

>NZ_CP025408|1|1|2312921-2313072|CRT
CCCTCAGGGAGGAGGAGGAGG	GCTGCCGCCGCAACAAGATCA
CCCTCAGGGAGGAGGAGGAAG	GCGATCCTGCTATCTGTCGGCGACA
CCCTCAGGGAGGAGGAGGAGG	AGAGGGTGCCGCCTAAACCCTT
GCCCCAGGGAGGAGGAGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025408.1\|WP_101460565.1\|2315265_2315565_-\|DUF1330-domain-containing-protein	unknown	unknown	gnl\|CDD\|377765
NZ_CP025408.1\|WP_101460556.1\|2298820_2300032_+\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|236226
NZ_CP025408.1\|WP_101460564.1\|2314762_2315227_-\|TerB-family-tellurite-resistance-protein	unknown	unknown	gnl\|CDD\|143584
NZ_CP025408.1\|WP_101460563.1\|2313673_2314753_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP025408.1\|WP_101460558.1\|2304160_2305486_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP025408.1\|WP_101460567.1\|2316523_2317429_-\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NZ_CP025408.1\|WP_101462042.1\|2308408_2309371_+\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_CP025408.1\|WP_101462044.1\|2321050_2321575_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NZ_CP025408.1\|WP_157994835.1\|2305563_2306652_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025408.1\|WP_101460568.1\|2317550_2318018_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025408.1\|WP_101460566.1\|2315561_2316437_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP025408.1\|WP_101460562.1\|2311921_2312707_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NZ_CP025408.1\|WP_101460557.1\|2300102_2301179_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025408.1\|WP_101460570.1\|2319255_2320899_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP025408.1\|WP_101462040.1\|2301591_2302260_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140
NZ_CP025408.1\|WP_101460561.1\|2309485_2311876_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NZ_CP025408.1\|WP_101460560.1\|2306992_2308180_+\|O-succinylhomoserine-sulfhydrylase	unknown	unknown	gnl\|CDD\|168979
NZ_CP025408.1\|WP_157994836.1\|2318500_2319259_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025408.1\|WP_101462043.1\|2313090_2313249_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|368980
NZ_CP025408.1\|WP_101462041.1\|2302396_2304136_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654

Protein	Function_ID	Function_description	E-value
NZ_CP025408.1\|WP_101460556.1\|2298820_2300032_+\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|236226	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase.	0
NZ_CP025408.1\|WP_101462044.1\|2321050_2321575_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	6.35945e-22
NZ_CP025408.1\|WP_101460564.1\|2314762_2315227_-\|TerB-family-tellurite-resistance-protein	gnl\|CDD\|143584	cd07313, terB_like_2, tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.	3.35432e-33
NZ_CP025408.1\|WP_101460558.1\|2304160_2305486_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	9.07913e-139
NZ_CP025408.1\|WP_101460567.1\|2316523_2317429_-\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	1.15372e-147
NZ_CP025408.1\|WP_101462042.1\|2308408_2309371_+\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	9.25244e-124
NZ_CP025408.1\|WP_101460563.1\|2313673_2314753_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	5.70237e-140
NZ_CP025408.1\|WP_101460566.1\|2315561_2316437_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.70083e-76
NZ_CP025408.1\|WP_101460562.1\|2311921_2312707_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	3.61095e-74
NZ_CP025408.1\|WP_101460565.1\|2315265_2315565_-\|DUF1330-domain-containing-protein	gnl\|CDD\|377765	pfam07045, DUF1330, Domain of unknown function (DUF1330). This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.	1.54e-36
NZ_CP025408.1\|WP_101460570.1\|2319255_2320899_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP025408.1\|WP_101462040.1\|2301591_2302260_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	1.11164e-134
NZ_CP025408.1\|WP_101460561.1\|2309485_2311876_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP025408.1\|WP_101460560.1\|2306992_2308180_+\|O-succinylhomoserine-sulfhydrylase	gnl\|CDD\|168979	PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed.	0
NZ_CP025408.1\|WP_101462043.1\|2313090_2313249_-\|DUF1127-domain-containing-protein	gnl\|CDD\|368980	pfam06568, DUF1127, Domain of unknown function (DUF1127). This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.	3.49607e-05
NZ_CP025408.1\|WP_101462041.1\|2302396_2304136_+\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.46759e-126

>NZ_CP025408.1|WP_101460562.1|2311921_2312707_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MLSYQHAYHAGNLADLHKHSMLAVALDYMVRKDKAMTYIETHAGRGLYRLDSPESLKTGEAAAGIRRAESEGWLQGGHPLLAALASVRSSHGKNSYPGSPLIASYFLRPKDSVHLAELHPAEHAALSWVAGSATIHRRDGFTVAHSLCPPTPRRGLMLIDPSYEVKTEYDEIPRKIAQIARKWNVGSIALWYPILSDERHLPMLEQLSADHRDVLRSEIRFPPLRADHNMIGSGMFVINPPWGLERETRRLEGAISRALGR
>NZ_CP025408.1|WP_101460561.1|2309485_2311876_+|UvrD-helicase-domain-containing-protein
MSQFDDTDAFEAAVPLSQRAMAARPTPYLDGLNIAQREAVEALDGPVLMLAGAGTGKTRALTTRIVHLLMLGKARPGQILAVTFTNKAAREMKNRIGRLLGEAVEGMPWLGTFHSISVKILRRHAELIGDGDLHLKPSFTILDTDDQLRLMKQLIAAENLDEKRWPARQLAGLIDSWKNRCITPAKLPKGESRAFDGMGGQLYAAYQRRLLELNAVDFGDLLMHCVTLFQAHPDVLKGWQDRFRYILVDEYQDTNVAQYMWLRLLAQAHQNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGARVIRLEQNYRSTPNILAAASGLIAENAGRLGKTLWTDAEDPGEKVRLIGHWDSEAEARWIGEEIEAFQGGHRHAVGKVSLNDIAILVRASHQMRAFEDRFMTIGLPYRVIGGPRFYERQEIRDAMAYFRLVVSPADDLAFERIVNTPKRGLGDKAVQTIQTVARQNGVGLLEGARIVVEEGHLGGRGLANLREFVQGVGRWHGEALDSQSSHIELAERILDESGYTTMWQNEKTPDAPGRLDNLKELVKALEEFENLQGFLEHVALVMDRDDGDAGEEVSIMTLHAAKGLEFPIVFLPGWEDGLFPSQRSMDESGQRGLEEERRLAYVGITRAERLATISFAGNRRLYGQWQSSMPSRFVDELPGDHVEVLTPPGLYGGGYGAAMAFAGANAGTDMHDRAAKADVYNSPGWKRMQASAAGRKPPVHKVPVVIDADPAAAFSVGDRVFHQKFGNGTVMGIAEDTVTVQFPTGFKTIKAAYLQPAGSAAGDDVPF
>NZ_CP025408.1|WP_101462042.1|2308408_2309371_+|GTP-cyclohydrolase-I-FolE2
MTENRPMIPAYPALARDYDADFKVDVDYKAGLPDLQNGPASLIVGAHKPIQHVGISNFRLPIRYERRDGGDMTLETSVTGTVSLEADRKGINMSRIMRSFYEHAEKQFSLKVLEAALNDYQTDLDALDARILMRLSYPVRVDSLRSGLSGWQYYDIALEVAEQAGQRLRIVHFDYVYSSTCPCSLELSEHAREDRGRLATPHSQRSIARISVVMKGPEKIWFEDIVDLCRRAVPTETQVMVKREDEQAFAELNASNPIFVEDAVRAFAQQLMTDDRFGDFRIVASHQESLHSHDAVSVLTDGPTFAQHSLDPSLFAELRV
>NZ_CP025408.1|WP_101460560.1|2306992_2308180_+|O-succinylhomoserine-sulfhydrylase
MSDTPRKDVHPRTAAVHAGTRRSQYGEMAEAIFLTQGFVYDSAEQAEARFVEAGPDEFIYARYGNPTSRMFEERMAALEGAEDAFATASGMAAVNAALFSICAPGDHVVAARALFGSCLYVLELLAKFGVEVSYVDGTDLDQWRTAIRPDTKAVFYESMSNPTLEVIDMQAVSDLAHAAGAIVVVDNVFTTPVFSRAVALGADVVVYSATKHIDGGGRALAGVICGTRDYIRKVAEPYLKHTGGAISPFHSWVMLNGLTTMDLRVRAQADSALAIAAAMQGHPDLSQVIYPGLADHPQHDLAMAQMGSGGTMIALELRGGKQAAFNALNRLQLIRISNNLGDAKSIITHPATTTHQRLSEEERERLGITPGLLRLSIGLEGADDLIADLRQALGN
>NZ_CP025408.1|WP_157994835.1|2305563_2306652_-|hypothetical-protein
MSRFRHGNKHSNRRDHDRDDHRNNHSNDRDGRDHGANGKDHTGDNSVTDITTPATGQVTWTMSKGATTVDVVATLDGKGNVVFDYDASGGKIDLTGFYLDINNDGGRHHAANVLDWMVGRDSDGDRMDGFDFTATIGSIWGYDGNNTGDQLVVSMSKLGIDSLSDLDGAELGFNSWAGNGWCKTNVQMANTGTYTAPAEPEDLCDRPIDGENVDGKIAMQDSQITEVTLAYYIPPVIDGDDISWPGDTNGDPFYVVTVSVPAEMGEDPDAYIAELNEAVAALDPNVPGANFLKSVIVTDCDGNSENFAIWFDENGELPDTLSDGLFGVLERDGGELPADIDLAAWSEATYDLTLSGDEFLFA
>NZ_CP025408.1|WP_101460558.1|2304160_2305486_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MATKLKIAIVDDEPDMRESISQWLVLSGFQTETFASAEDALKVIGPDWPGVVVTDIRMPGMDGMAFLKRLMGIDSGLPVIMITGHGDVPMAVEAMRIGAMDFMEKPFNPDRMSELAKKATQSRRMTLDNRALRRDLSEGQQVMSKLIGTSPVMERLREDILDLGQADGHVLIDGETGTGKTLVAHALHAVGPRASKKFVPVSCAAYNDEALAVRLFGPMETGVPAVEEARGGTLCLEDIEALSDPLQARLLAFISDQGSPAETRIIAISNARGEGRKAEDSLRPDLFYRLSALKITLPPLRARGEDILSLFTRMTEQFSEEYGCEPPQVNAQEAAQLLQAPWPGNIRQLINVAERAVLQNRRGSGSIASLLMADGDDNQQATTTEGKPLKEYVESFEKMLIDNTMRRHKGSIAAVMEELCLPRRTLNEKMAKYGLQRGDYL
>NZ_CP025408.1|WP_101462041.1|2302396_2304136_+|sensor-histidine-kinase
MRAAIALILITAAAVIWVTNAWLTERFSETTRVRQELRSALYIGNLRSELQRTAVVPLLLARDPALIGSLNGNDYSTTSARLIAAQKDINVASIRLLDASGRVVGATDRLMIGSNEVMRPYFVEAMRSRDTVFSVSQNAAGANEFVYSRAVVADGKALGVIAVAADLLRLERSWASISDAVAVLDSSGTIILTTESRWRGLTLPEALQVRSAPSAIERAYQVTADWTNMPPDAYVGGRAVMQTESRVPFRGWRMVSFATYDSIRERVNAVLATEIMGFAILLAATFYILSRRERFKSAAVMRESADLRALNSRLKAEISERVRVQRELRVAEQTMQQSSKLAALGEMSAGVSHELNQPLAAMKTYLAGARLLLQRGRSEEAMSSFQRIDDLVDRMGAITRQLKSYARKGGEAVEPVDLRASVSAALTMMEPQLRGSTIRVSNNIPREKIMVLADRVRLEQVIINLLRNAVDAVKSQRDPMIDLTVSAGSRAHVSVRDNGPGVADLEKLFEPFWTTKKPGEGTGLGLAISSGIVSDFGGRLTAHNEAGGGAVFEVELPLFEPGTRQSKSDPTDGTNLAAE
>NZ_CP025408.1|WP_101462040.1|2301591_2302260_+|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MKAAVITFPGSNCDRDLAVALEQAGAQVARVWHKDQSLPDGTDLVAVPGGFSYGDYLRCGAIASHSPIAAALREHAARGGYVLGICNGFQVLTELRLLPGALMRNAGLAYVCKPVALQVVRADSSFTQGYTQGQQITLPVAHHDGNYQIDAEGLAQLQGEDRIAFRYAAGVNGSVDDIAGVLSANRRVLGMMPHPERATDPALGGRDGAAMFSALADRLVTA
>NZ_CP025408.1|WP_101460557.1|2300102_2301179_-|hypothetical-protein
MYRFPITSAALLMLSATALAAQSGPPNKVEGIFTNAFASGFPRQIEDLSQSKLETNPAKGSVFAEYGNDDNTRNVQIRLFPLPEDGIDAVLLRDVQRYSDGSEIPVNTSETQSPQGEPMDCFTRRKGELGYTVCLAEIRGRAARLQMGAVVDPDADALPADIVERDQKLAGVFVDSIHEAPESAGAAEGDAPLFPADIPALDMSGADVRPQDTPFAKALPKELGDRSLKTISVSGPDTTYKAMYRDAEDTPTQIVIYTGEGGPLQDLAEFHEGELANILGSIQKTDTTTPDGLDMRCLHAVKVETLAANTCMAEVGLGLLEIQAVARIDEGVTDVPDDVINWAQESTGTLADAVAELN
>NZ_CP025408.1|WP_101460556.1|2298820_2300032_+|NADP-dependent-isocitrate-dehydrogenase
MSKIKVENPVVELDGDEMTRIIWDFIKQKLILPYLDIDLKYYDLGIEERDSTDDQITVDAAEAIKQYGVGVKCATITPDEARVEEFGLKKMWRSPNGTIRNILGGVIFREPIICKNVPRLVPGWTQPIVVGRHAFGDQYRATDFHFPGKGTLTIKFVGEDGETIEHEVYQSPGAGVAMAMYNLDDSIRDFARASLNYGLLRNYPVYLSTKNTIMKVYDGRFKDIFQEIYDAEFADDFKKAGIHYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSQLMTPDGKIVESEAAHGTVTRHYREHQKGNATSTNSIASIFAWTGGLKHRAKLDGNDKLMEFAETLEKVTVQAVEDGFMTKDLALLVGPEQKWLTTMGYLEKVDEYLNKALN
>NZ_CP025408.1|WP_101462043.1|2313090_2313249_-|DUF1127-domain-containing-protein
MAGMQENRARNAVYRQTIRELNSLTERDLSDLGIHRSMIRRIALEAAYGTAK
>NZ_CP025408.1|WP_101460563.1|2313673_2314753_+|Mrp/NBP35-family-ATP-binding-protein
MSIDDQVALGSISQIAIPGGGTLGQADLIRAFSVEDTTVRFVLELKDAEQARAFEPVEAEARRILLALPGVEQVSIVRTAQSGGGARGGDQPPQMKLGRHPKPQAGPQQIPGVSRIIAIGSGKGGVGKSTVTSNLAVAMARAGRRVGILDADIHGPSQPRMMGASGRPASPDGQRIEPLQAHGVTLMSIGFMLNEGEAVVWRGPMLMGAMQQMLQQVNWGELDILLIDLPPGTGDVQLSLCQKAAVTGALIVSTPQDVALLDARRAIDMFGKLKTPVLGLIENMSTYICPNCGHEAHPFGHGGVATEAKALDLPFLGEIPLELEVRLGGDAGQPVALGDGAVSQAYARLADRLIKGGMA
>NZ_CP025408.1|WP_101460564.1|2314762_2315227_-|TerB-family-tellurite-resistance-protein
MFRSLLTRLFADEPAPGDIDANDAEMALAALLVRVARADDRYAKIEMRRIDQVLARRRGLSQQEAAELRAAAEMIEAEAPDTVRFTRIIKDRIALEDRFSVIAAMWEVAYSDDDRAMDEESVIRLVAGLLGVNDRDSAFARQRVLEQNGQTDNS
>NZ_CP025408.1|WP_101460565.1|2315265_2315565_-|DUF1330-domain-containing-protein
MTKGYWIAHMTIDNADAYEAYRQANAVAFEKHEGRFLVRGGPQQVTEGEARSRSVVVEFPSYQAAQDCYHSAEYQAALALRLPVCTGDLAIVEGYDEPR
>NZ_CP025408.1|WP_101460566.1|2315561_2316437_-|PhzF-family-phenazine-biosynthesis-protein
MLDFYICDVFTDRPFTGNPLAIVMDAGALSTAQMQTIARQFNLSETIFVMPPRDPAHTARVRIFFPTAEIPFAGHPTIGCALHLASGRDMQIMLEEEAGLVPVTIKGGVAQFVAPKLPVAHPGHAEPDLIAGALDLPVAALGFDNHSVGIWQGGPAFLYLPLASLDDLARARPIEPHWSRLMEAAQVDSAYLYTRDTDGYRARMLSPSAGIPEDPATGSASALLAAQLLAAGELVEGENTIALRQGIEMGRPSQIGLTAVTSGGALTEIRISGTAVPIAEGRIAIPEEVSK
>NZ_CP025408.1|WP_101460567.1|2316523_2317429_-|polyphosphate-kinase-2
MKDEPKDWLDAELQDTLDEDFELELEDAVLSTEIKRIYRENHPEQMDRRVYFQELLRLQSELIKLQDWASHYGEKIVVLFEGRDSAGKGGAIKRITQRLNPRVARVVALPAPSDREKTQWYFQRYVPHLPAGGEIVLFDRSWYNRAGVERVMGFATEDQVEQFFQDVPEFERMLVRSGIRLVKYWFSVTDEEQQMRFLIRIHDPLKQWKLSPMDLQSRVRWESYTKAKEEMFERTNIPEAPWYIVPGNDKKRARLNCMNHLLGLMPYTEVPHEEIELPNRVFNPDYERDVLPRDLYVPQKY
>NZ_CP025408.1|WP_101460568.1|2317550_2318018_-|hypothetical-protein
MRLALAAIASALLAIPAHADAPLIVIEQSQIPFDLGPAHPANKPSRMSNSPNSAWNSAANSANSSSAYENRPSNPANSERLIITGDGGVMGFYSRNAGGVLNLFDVNGRRIAYRPAKGTRSLFTTDGQWCGTVDGVRGGGFVLGVTRSCAARFNR
>NZ_CP025408.1|WP_157994836.1|2318500_2319259_-|hypothetical-protein
MKTPIHPDFRIETVRDLCWNNSEQTSFDCWVKLSSTKQELPFTASPDDTAQHGRDLFQRGVAGEFGLIKPYSSNLQQQNTHNIEIPAWYTEEFQSFLDSANLENASLSLRGSAIVLASGLEEVLRRLITSFLVDHKATDQLVKERSLTQLANLAFSLGLITRTESEHIRRYNDIRNALAHNWHSPRSMDDLDKKTLSKLQQFYEEYAAQIFHPTTDLRLFVQRGANFGIQGIFFHLWQRQSDIKDRQLAERH
>NZ_CP025408.1|WP_101460570.1|2319255_2320899_-|CTP-synthase
MARYIFITGGVVSSLGKGLASAALGALLQARGFTVRLRKLDPYLNVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFTGVHARKTDSISSGRIYSNVLEKERRGEYLGKTIQVIPHVTNEIKDFLTIGDDEVDFMLCEIGGTVGDIEGLPFFEAIRQFIHERPRGQCILMHLTLLPYLAASGELKTKPTQHSVKELQSIGLAPDVLVCRSEHPIPEKERAKIALFCNVRPDHVIPAYDLKSIYAAPLAYHSAGLDQAVLDAFGISPAPRPDMSRWDDVMDRLQNAEGEVKIAIVGKYTQLEDAYKSIAEALTHGGMANRVRVKADWVDSEKLEGEGAHLLDGYHGIIVPGGFGERGTEGMVAAARYAREKQVPYLGICLGMQMAVIEAARNLADMPDAGSEEFDHEAGKTRFTPVVYHLKEWVQGNYTVNRKLGDDKGGTMRLGAYTAVLEPGSKISEIYDGALEMEDRHRHRYEVDAKYRDQLEDAGLRFSGMSPDGKLPEVIEYPDHPWFIGVQSHPELKSKPFAPAPLFAGFVEAAKEGARLV
>NZ_CP025408.1|WP_101462044.1|2321050_2321575_-|preprotein-translocase-subunit-SecG
MQNVVLTIHLILALLLTGVVLLQRSEGGGLGMGGSGGGGGGGVMSGRQAANVFTRLTWVFGIALFVTSIALTVIAAREASTGSIIDQLGGQAQSQEEAPASNLPNLGTYTPPPTTSGQPVTPPSPQAPASAPAETAPATTAPETTAPEAAAPAADAVTPPAAETPAEPAQPATN

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Crispr_ID: NZ_CP025408_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025408_2

3538717-3538900

Orphan

Consensus_repeat	Method
GGTGCAGTTGCCCTTCATGCGGGCATGGTCCGTTAACTGG	CRISPRCasFinder
GGTGCAGTTGCCCTTCATGCGGGCATGGTCCGTTAACTGG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP025408_2

>merge|NZ_CP025408|2|3538717-3538900|CRISPRCasFinder,PILER-CR
GCCGCCGTTGCCCTTCATGCGGGCATGTTCCGTTAACACAAGCTGCTTTGCGTCGTATCGATGATGGTGTGTGGTGCAGTTGCCCTTCATGCGGGCATGGTCCGTTAACTGGACAAGTTGATCACTCGGCTCAATGTCTCAGAGGGTGCAGTTGCCCTTCATGCGGGCATGGTCCGTTAACTGG

>NZ_CP025408|2|1|3538717-3538900|CRISPRCasFinder
GCCGCCGTTGCCCTTCATGCGGGCATGTTCCGTTAACACA	AGCTGCTTTGCGTCGTATCGATGATGGTGTGT
GGTGCAGTTGCCCTTCATGCGGGCATGGTCCGTTAACTGG	ACAAGTTGATCACTCGGCTCAATGTCTCAGAG
GGTGCAGTTGCCCTTCATGCGGGCATGGTCCGTTAACTGG

>NZ_CP025408|2|1|3538720-3538900|PILER-CR
GCCGTTGCCCTTCATGCGGGCATGTTCCGTTAACACAAGC	TGCTTTGCGTCGTATCGATGATGGTGTGTGGTGCA
GTTGCCCTTCATGCGGGCATGGTCCGTTAACTGGACAAGT	TGATCACTCGGCTCAATGTCTCAGAGGGTGCA
GTTGCCCTTCATGCGGGCATGGTCCGTTAACTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025408.1\|WP_101461569.1\|3534453_3535560_-\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377472
NZ_CP025408.1\|WP_157994900.1\|3528985_3530077_-\|DUF2125-domain-containing-protein	unknown	unknown	gnl\|CDD\|370743
NZ_CP025408.1\|WP_101461577.1\|3546655_3547774_+\|aromatic-hydrocarbon-degradation-protein	unknown	unknown	gnl\|CDD\|224978
NZ_CP025408.1\|WP_101461568.1\|3534025_3534457_+\|DUF1489-domain-containing-protein	unknown	unknown	gnl\|CDD\|369333
NZ_CP025408.1\|WP_101461566.1\|3530183_3530753_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NZ_CP025408.1\|WP_101461564.1\|3528037_3528976_+\|prephenate/arogenate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|236034
NZ_CP025408.1\|WP_101461573.1\|3539944_3541156_+\|DUF3644-domain-containing-protein	unknown	unknown	gnl\|CDD\|378842
NZ_CP025408.1\|WP_101461571.1\|3537150_3538527_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|380118
NZ_CP025408.1\|WP_101461563.1\|3526946_3528041_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235064
NZ_CP025408.1\|WP_101461579.1\|3548761_3549691_+\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|235433
NZ_CP025408.1\|WP_101461572.1\|3539187_3539664_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025408.1\|WP_101461576.1\|3544770_3546219_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP025408.1\|WP_101461580.1\|3549734_3550796_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025408.1\|WP_101461574.1\|3541305_3541518_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379385
NZ_CP025408.1\|WP_157994901.1\|3542838_3543057_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223364
NZ_CP025408.1\|WP_101461567.1\|3532239_3533979_+\|peptidoglycan--binding-protein	unknown	unknown	gnl\|CDD\|181619
NZ_CP025408.1\|WP_101461570.1\|3536126_3537167_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132838
NZ_CP025408.1\|WP_101461575.1\|3543580_3544606_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|239584
NZ_CP025408.1\|WP_101461578.1\|3547896_3548760_+\|ATPase	unknown	unknown	unknown
NZ_CP025408.1\|WP_101462200.1\|3530943_3532236_+\|biopolymer-transporter-ExbB	unknown	unknown	gnl\|CDD\|306675

Protein	Function_ID	Function_description	E-value
NZ_CP025408.1\|WP_101461569.1\|3534453_3535560_-\|AbrB-family-transcriptional-regulator	gnl\|CDD\|377472	pfam05145, AbrB, Transition state regulatory protein AbrB. Bacillus subtilis respond to a multitude of environmental stimuli by using transcription factors called transition state regulators (TSRs). They play an essential role in cell survival by regulating spore formation, competence, and biofilm development. AbrB is one of the most known TSRs, acting as a pleotropic regulator for over 60 different genes where it directly binds to their promoter or regulatory regions. Many other genes are indirectly controlled by AbrB since it is a regulator of other regulatory proteins, including ScoC, Abh, SinR and SigH. Hence, AbrB is considered a global regulatory protein controlling processes such as Bacillus subtilis growth and cell division as well as production of extracellular degradative enzymes, nitrogen utilization and amino acid metabolism, motility, synthesis of antibiotics and their resistant determinants, development of competence, transport systems, oxidative stress response, phosphate metabolism, cell surface components and sporulation. AbrB is a tetramer consisting of identical 94 residue monomers. Its DNA-binding function resides solely in the N-terminal domain (AbrBN) of 53 residues. Although it does not recognize a well-defined DNA base-pairing sequence, instead, it appears to target a very weak pseudo consensus nucleotide sequence, TGGNA-5bp-TGGNA, which allows it to be rather promiscuous in binding. The N-terminal domains of very similar sequences are present in two more Bacillus subtilis proteins, Abh and SpoVT. Mutagenesis studies suggest that the role of the C-terminal domain is in forming multimers.	9.89372e-60
NZ_CP025408.1\|WP_157994900.1\|3528985_3530077_-\|DUF2125-domain-containing-protein	gnl\|CDD\|370743	pfam09898, DUF2125, Uncharacterized protein conserved in bacteria (DUF2125). This domain, found in various hypothetical prokaryotic proteins, has no known function.	5.97728e-13
NZ_CP025408.1\|WP_101461577.1\|3546655_3547774_+\|aromatic-hydrocarbon-degradation-protein	gnl\|CDD\|224978	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism].	3.74292e-32
NZ_CP025408.1\|WP_101461568.1\|3534025_3534457_+\|DUF1489-domain-containing-protein	gnl\|CDD\|369333	pfam07370, DUF1489, Protein of unknown function (DUF1489). This family consists of several hypothetical bacterial proteins of around 150 residues in length. Members of this family seem to be founds exclusively in the Class Alphaproteobacteria. The function of this family is unknown.	4.19228e-64
NZ_CP025408.1\|WP_101461566.1\|3530183_3530753_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	1.04626e-64
NZ_CP025408.1\|WP_101461564.1\|3528037_3528976_+\|prephenate/arogenate-dehydrogenase-family-protein	gnl\|CDD\|236034	PRK07502, PRK07502, prephenate/arogenate dehydrogenase family protein.	0
NZ_CP025408.1\|WP_101461573.1\|3539944_3541156_+\|DUF3644-domain-containing-protein	gnl\|CDD\|378842	pfam12358, DUF3644, Protein of unknown function (DUF3644). This domain family is found in bacteria, and is typically between 65 and 80 amino acids in length.	2.06376e-25
NZ_CP025408.1\|WP_101461571.1\|3537150_3538527_+\|nucleotidyltransferase	gnl\|CDD\|380118	pfam18134, AGS_C, Adenylyl/Guanylyl and SMODS C-terminal sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by bacterial adenylyl/guanylyl cyclase domains. The sensing of ligands by AGS-C is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	9.71367e-21
NZ_CP025408.1\|WP_101461563.1\|3526946_3528041_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235064	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated.	0
NZ_CP025408.1\|WP_101461579.1\|3548761_3549691_+\|homoserine-O-succinyltransferase	gnl\|CDD\|235433	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional.	0
NZ_CP025408.1\|WP_101461576.1\|3544770_3546219_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP025408.1\|WP_101461574.1\|3541305_3541518_-\|hypothetical-protein	gnl\|CDD\|379385	pfam13817, DDE_Tnp_IS66_C, IS66 C-terminal element.	0.00673663
NZ_CP025408.1\|WP_157994901.1\|3542838_3543057_+\|hypothetical-protein	gnl\|CDD\|223364	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism].	0.00102749
NZ_CP025408.1\|WP_101461567.1\|3532239_3533979_+\|peptidoglycan--binding-protein	gnl\|CDD\|181619	PRK09039, PRK09039, peptidoglycan -binding protein.	9.29792e-92
NZ_CP025408.1\|WP_101461570.1\|3536126_3537167_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132838	cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.	3.25897e-62
NZ_CP025408.1\|WP_101461575.1\|3543580_3544606_+\|fatty-acid-desaturase	gnl\|CDD\|239584	cd03507, Delta12-FADS-like, The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which catalyzes the hydroxylation of oleate to ricinoleate. Plastid-bound desaturases (Arabidopsis delta-12 desaturase (FAD6), omega-3 desaturase (FAD8), omega-6 desaturase (FAD6)), as well as, the cyanobacterial thylakoid-bound FADSs require oxygen, ferredoxin, and ferredoxin oxidoreductase for activity. As in higher plants, the cyanobacteria delta-12 (DesA) and omega-3 (DesB) FADSs desaturate oleate (18:1) to linoleate (18:2) and linoleate (18:2) to linolenate (18:3), respectively. Omega-3 (DesB/FAD8) and omega-6 (DesD/FAD6) desaturases catalyze reactions that introduce a double bond between carbons three and four, and carbons six and seven, respectively, from the methyl end of fatty acids. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homologue, stearoyl CoA desaturase. Mutation of any one of four of these histidines in the Synechocystis delta-12 acyl-lipid desaturase resulted in complete inactivity.	4.2763e-56
NZ_CP025408.1\|WP_101462200.1\|3530943_3532236_+\|biopolymer-transporter-ExbB	gnl\|CDD\|306675	pfam00209, SNF, Sodium:neurotransmitter symporter family. These are twelve xTM-containing region transporters.	5.99864e-05

>NZ_CP025408.1|WP_101461571.1|3537150_3538527_+|nucleotidyltransferase
MGIAANLFHNPDDRENSLAYRIRPSDDQIQQQQERWNDLADVLKEMLRDRVGKPVSSWLQGSYKFGTQIRPARMGEEFDIDLGIYVEWPGAAKDGANGACELKDHVQAILQDYASVDANDATEAAKPKPRCNRIRFGQDFHIDVPSYHLDRQDDARELATEDDKWDNSDPKAVYVWWKRQFDGAQRDRARRLARYLKMWAALTFEHEARPSSILLTVLVARALASAKTDDLSGDDEYLQAVVAEIAERLQASRVVRNPANRAEDLNRLSDVDFDDFRIKLDELLSVAERALAAVDQCDSAEIWSEAFRHFFPYPREDGAKAEVAARHAIAPLRFDPQVSVLATQNKRSWTGHNGIGPIPRNCDIRFAVVNHDELPDGAAISWTVRNEGREAEVANDLGHIGGAGTQHQERSAYRGTHNMDVVVKMNGRVIGRRRVEVQVSGLVFPQRNPARPAWVSLR
>NZ_CP025408.1|WP_101461570.1|3536126_3537167_+|patatin-like-phospholipase-family-protein
MTFRVLALSGGGYRGLYTAQVLAGIEEASGLPLHRRFDLIAGTSIGGILALALATGKSSMAATAGLMAMQGTSIFGESAPPKGAVGKIIDYARHSRGARYDPAPLKCLISGLVGQDTRIGDLKQKVIVPAVNVTKGGPQVFKTPHHPRLVRDWKLPLVDVALATSAAPSYFPLHSIGSERFADGALYANSPDDLALHEAQHFLGQELPDIHVLSIGSTTSKFSFPSSLHSNLSWFSWLLDQRLTSAMIAAQQMNTDYIIRHKLGDRYIRVDAIPSPKQLPEMTLDNASKTVATDLMGLAEASLRESLPAIKAAGFLDHEADEEDFLSREDVGNYFSELRGQNGHCG
>NZ_CP025408.1|WP_101461569.1|3534453_3535560_-|AbrB-family-transcriptional-regulator
MRFPRRVLPQGFHNPTILLTSLFATIGGALADLAGLPLGWLLGSLLVSAAAALTGWRPLGHPVQLWPGLRAWFIPVIGVAIGASFTPQILQQASAWWPSLLALCVFIPLVHALCFWLTMRDGRVDRVTAFFGTVPGGLIESVELGAERGADIAMLTMLQFLRLILVIVCVPLAFTLLTGHAVGSASGAVMGGAEAHEWGQLLILAAAGVAGVLVGAKLHFPAAIMTGPILASGLLHLLGLVEGAPPAWLIAVTQIVVGTSLGVRFAGLQRHHMLAALKLSVVNTGLALLLALVMAAALTTVQQQSAQAVFLAFAPGGIAEMSLIALSLDIGVVFVTAHHVLRIVLSIAFARALSGRVLDGTRPKSGQG
>NZ_CP025408.1|WP_101461568.1|3534025_3534457_+|DUF1489-domain-containing-protein
MDSPAPLNMMKLCVGADSPDHLAAWQKQRFGTAPACHVTRMWPKRDSEIRDGGGSIYWVFKGMMLARQKLIGFEERIGQDGIRRCALMLDRDLVRVAPVPRRAFQGWRYLEGGNAPTDLPRGAQSEPSLPPEVAARLADMGLL
>NZ_CP025408.1|WP_101461567.1|3532239_3533979_+|peptidoglycan--binding-protein
MALHRASSNRFSSTIWPGFVDAMTALLMVLMFVLTIFMIVQSVLREQITDKDTQIADQVQRLSSQDQRLEELGGQVAQLTGALTASQDETAGLQSDLAAQQAEAEALTGELDDARNQARERAARITQLTNDLTARQRDLTIGQQQLAQTAEELDRASSRITDFEAEVAALLAARERADTQSSARQAELQDQLASEQRKVSAAQLAVAAARSEIDAQAEQARLAAARREALQALVADLRSRSSGADADQARLQADLTEAEAARIAESEAAQALRGRLETADSELTAMTLALEESRKEAEETLTLLAAAQAARDELDVVAAENATEAERQAALLATAQAALAEQEELSTDGQRRVALLNEQVASLTGQLGRLQAALEAAGDDQQQAELRVEDLGQQLNAALLRTAEERQARLVLEEEARKLAEDEAADLARYRSEFFGRLSQILQGREGIEVAGDRFVFSSEVLFQQGEADLSDAGRTQVRNVAGILDTVATEIPPEIDWIIRVDGHTDDVPLSGTGRYRDNWELSQARALAVVRYMVEDLGFPEGRVAPAGFADTRPVAQGDSEEARAQNRRIELKLTER
>NZ_CP025408.1|WP_101462200.1|3530943_3532236_+|biopolymer-transporter-ExbB
MATVVKPQFSQPVRQSFLMLAVLALVITGAWFAYGRILPIFAANLWLNGLILGVFVLGVLACFWQVAQLVQSVSWIERFAARRRQALGLTPGEVTPAVDPQQAAPRLLAPLASLLGARDSTGGVISTGASRSILDSVATRIDEARDITRYLANLLIFLGLLGTFYGLATTVPAVVDTIRALAPQEGETGVEVFEKLMGGLETQLGGMGIAFSSSLLGLAGSLIVGLLELFVTHGQNRFYRELEEWMSGFTRISLAGSEGEAVDQVAIAGFLDQMAGQMDRLQQYHAERDLDRDQAAAQADERVVVMAEAVETLLRQVESERDSSVARAASMASGLNRIADGQDRLIAQGEAVARLPAQNTASERGLDLSRLESALHRIADDLNVGREEMLVELRSDLLVLTRAVRAARFGDPFRDDQLPSFRGHNPQDQG
>NZ_CP025408.1|WP_101461566.1|3530183_3530753_+|gamma-glutamylcyclotransferase
MSSLCWVFGYGSLMWDPGFRVIESTTARLDGYARSFCLRSTRYRGTAETPGLVLGLDADPDAHCTGIALRFAPEERDSILSYLRERELVTHAYREAILPIALEDGRRVEALTYVMRRDHVQYAGGLAPCEQARIISGAHGMRGPNADYLFNTTRHLAEFGMSDAALDALSEDVRRLLRDPADDNGKQRN
>NZ_CP025408.1|WP_157994900.1|3528985_3530077_-|DUF2125-domain-containing-protein
MRWLLVIVLVVAAVLGGIWLGGESWLAGRATAALDQRDDLGAAAVNPLREISRVGLRAEQVDYTGRLEDGTDLSVSLPWLELWSRPTSPQAFHATLPEQLSLVVGATPVAMLLDDAQGMLRLSPVNNLAVTRAEISVDSAEIDGQAILNGLAVDAELTGLGYDAPRAANAAYDVSLQLQSLEPAALAAFGAPQLAVPGAISAQGNLRLWLSAAPGRGMLQGRSHQVQPVGLRTDGLELGLGDLRARLVGVVSADAEGRAEGRLALYTADSREWLRAASDAGLIPESAVMLGGAMLQGLSSTPMSAEPATDSASQQDGSQLHAATEFTFPEPATDELRIPIFLRDGQAFLGAIPIGPAPQFLGG
>NZ_CP025408.1|WP_101461564.1|3528037_3528976_+|prephenate/arogenate-dehydrogenase-family-protein
MSVIYDRVVLIGLGLIAGSMAHAMRAFGLAGHVAGYARSAETRDTARRIGMCDSIHDSAAEAVAGADLIVLAVPVSAMGEVAAQIAPHLKPGATVTDVGSVKQSVVQSVGPHLPPNVHFIPGHPLAGTEHSGPLSGFASLFQNRWWLLTPPEGTDQQALARLRDLIRGMGANIEDMEPGHHDLVLAVTSHVPHLIAYTMVGVADHLRRVTESEVIQYSAAGFRDFTRIAASDPIMWRDVFMENSEATLDILGRFTEELFVLQRAIRMGDGPQLHEYFTRTRAIRRSIIEAGQDTDAPDFGRSAVQPVATPDG
>NZ_CP025408.1|WP_101461563.1|3526946_3528041_+|histidinol-phosphate-transaminase
MAGIKAQPGIMDIALYVSGESKLAGREDVLKLSANENPYGCSPAATAAFQSAAGDLHRYPATDHGPLRRAIGEVHGLDPDRIICGVGSDEVLQFVAQAYAGPGDEVITTQHGFSMYPILAHAVGALPITVAEHDRRIDVDAIINEVTGRTRIVFIANPANPTGTMLTDEELTRLAEGLPASCLLVHDGAYTEFADGFDGGASLVDRFPNVVMTRTFSKIHGLGGLRIGWGYARREVIDVLNRLRQPFNLSNAQMAAAEAAIRDTEFTAQCATENARLRRWMSEQLLQMGIDCDESHANFLLARFDSPEQAMACDAALRDAGIIVRLVASYGLPHALRITIGDEDGCRRVMAVISDFMADQRGAA
>NZ_CP025408.1|WP_101461572.1|3539187_3539664_+|hypothetical-protein
MRIIRPYGSSVTERDETGERRRIRPTAAPDQLRDVPAFAGSDQRLVIAQWISVIDKIATKPKGNGGASREQWALRTALGGACWRLIDRWRLLAPADRTEMRALWELRLHPYGNRKWKAKKRNGKFTKPPEPRGRWYAAFLGDTPFGKLQNERKRCIDR
>NZ_CP025408.1|WP_101461573.1|3539944_3541156_+|DUF3644-domain-containing-protein
MPSEVERAKKTKRRRGNTLENWEVGIVKAMIDRGGPATNDQDILAYFTRPTRSINHRLISEIRTGAKHKTIKPASEEDLDAFVSTWPDIDHQTGLSIRGDELLIKGREAMIAAVQTFNSAGLTFRAELFIVTAVIAWTYLLHAWFRREGIDYRYPGQKTKEGADKFWEAGHCLKHDRCPVKGGAAKNLQFLIEIRHEIEHRSTNRIDDALGAKLQACALNFNELLKNEFGVQYGLEKRLPLALQFVSFGAEQRTVLKQASGLPKHIEAAIDAFEHGLNDEQLKDPAYRMTYGFVPMAAKKPGAADTAVQIIGPGSEMAGEIEKIIFKEVNRERYPPGKVVEKAQAAGFPEFRMHDHTQLWKKRGAKTIGKGYGCIGDYGHWVWFDRWVDQVLEHCEAEGDRYR
>NZ_CP025408.1|WP_101461574.1|3541305_3541518_-|hypothetical-protein
MTKKNSLFAGTHETADVWAIYYSLIESARLNKVNARSYMNSVVSEIERTRGEIDYGLLMPWHCPNGHITD
>NZ_CP025408.1|WP_157994901.1|3542838_3543057_+|hypothetical-protein
MLDYTNFGELGEIIKSNWDDFADIFTDIQAVERILKNLNTLRAAIAHCTPLAEDEELRLHLSLRDWFRQQGG
>NZ_CP025408.1|WP_101461575.1|3543580_3544606_+|fatty-acid-desaturase
MLDQTPTARSAREWLSILARYREPSTPRSLFELAVTLIPFFAIWALAWMALSVSPWLSLVLALINGAFLVRIFIIQHDCGHGAFLANRKAQDWLGRSLGVLTLTPYAVWRRTHSIHHAHHGNLDQRGMGDVMTLTIDEYRGRSAFGRFSYRLYRHPFFLFAMVPSYLFILQNRLPVGLMSSGWRYWASAMGTNAVLAAILGVMIWFGGLMPVLVIFLPTSVVGATIGVWLFYVQHQFEETHWSKGEHWQLHDAALDGSSHYILPQPLKWLSGNIGIHHVHHLYSRIPFYRLPDVIRDHRELAEAQRLTMRESFAAARLHLWDDAQRRLLSFAEARARYGIA
>NZ_CP025408.1|WP_101461576.1|3544770_3546219_-|IMP-dehydrogenase
MQIREALTFDDVLLVPAASGVMPSTADVMTHVTRSIRMNIPLLSSAMDTVTESRMAIAMAQSGGMGVIHRNLTVEQQADEVRRVKRFESGIVYNPITLTPDQTLADAQALQARYNVTGFPVVDANGRVVGIVTNRDMRFASDAKTPVKVMMSSDNLAMLTEPADRGEAISLMKARRIEKLLVTDGQGHLTGLLTLKDTETAVLNPLACKDDLGRLRVAAASTVGNEGFERSQALIDAGVDMVVIDTAHGHSDSVAMAVERVKNISNEVQVVAGNVATAEATRALIDAGADAVKVGIGPGSICTTRIVAGVGVPQLTAIMDAAGAAGDIPIIADGGIKSSGDFAKAIAAGASCAMVGSAIAGTDESPGEVILYQGRSYKSYRGMGSLGAMARGSADRYFQKDAASDKLVPEGIEGQVPYKGPATAVIHQLVGGLRAAMGYTGNATVDQMRGGCNFVRITGAGLKESHVHDVQITRESPNYRLG
>NZ_CP025408.1|WP_101461577.1|3546655_3547774_+|aromatic-hydrocarbon-degradation-protein
MKFAFTGAAALLMGTTSVMAGGIERAPQSLNVLFEEGNYAELSFGAVDPTIEGTDVLGAATGDVAQGYGFVGLAYKHQFNANLSAALIIEQPFGADIRYAPFDGTNGSPVLGGTRAIVDSTTYTALMRYKWENNFSVHGGIRGSRASADVTLDGLAYGGPPPTGISGYGVSFDDSWGVGYVAGIAWEKPEIAARVSLTYNSDIEHDFDTTYSLVPGVTANTTVSTPASWTLEGQTGVAADTLVFGSIRWVDWSEFKVMPPGVGPLPSVDLVGLEDTTTFNLGVGRKFTENWSGSASFTYEKAGDDLVSPLAPTNGRKGITLAGIYTQDNLKITTGVNYTKLGDAQPQTADTARASMTDSEAWGVGVRVGYSF
>NZ_CP025408.1|WP_101461578.1|3547896_3548760_+|ATPase
MIYASGQEWRDASQRRVVLFGMSGLGKTYLASMLREQGNWFHYSVDYRIGTRYMGEYISDNLKLAAMKVPLLRELLLTDSVCVSSKISFDNLAPLSTYLGKPGSPSRGGLPFDDYCERQDQHRTAEIASLMDTDRFIRRAFDIYGINSFVCDTGGSICEVVDPDDPDDPVLSALARGLLLVWIKGSDEHTAELVRRFDRAPKPMYYQPEFLDRAWISYRAEKGLTEDQVNPDDFIRWTYARALAHRQPRYAAMAQRGVTITAEEVQKVAHPGDFIDLIATAIDRKIA
>NZ_CP025408.1|WP_101461579.1|3548761_3549691_+|homoserine-O-succinyltransferase
MPITLNESLPAYRILSDEGVMVISPGRAETQDIRPIRIGLLNLMPKKIQTENQFARLIGATPLQIDFQLIRMSEHESRNTAADHMESFYRPFREVVETDEKFDGLIITGAPIEHLPFEQVTYWDELTRVFEWTQTHVHSTMGVCWGGMAMAWHFNGVAKHALDEKAFGCFRHQNLAPASPYLRGFSDDVLLPVSRWTEMRQDEVDSKPGLITLLASEETGPCLVEDPARRAVYVFNHLEYDSTSLKDEYDRDVAAGKPISLPRNYYPNDDPSQQPANRWRSHAHLLYGNWINEIYQTTEYDMRKIGTQG
>NZ_CP025408.1|WP_101461580.1|3549734_3550796_-|hypothetical-protein
MSDAIDEYLDDLKHRHTNHDTYWALPLSTAYTTAYDNVSATLDADSKRRQAEAELIADLILLGVSIPIGGVLTARLGAAVSGKSLASKAAKMLAQRNSARASMVAGLLRTDTGAYVIGETYGAIKKHIKSSTQSKIASVLAYNPLSGLQGLGENPLILKNRLQEFNGRHYDAAASFATDVRDNKEISSNVKSEIAAVLRKSSYFTGASHTGQFSQPAALAQDIEIMMWSAYILNTDYWEQAQFDRFGKEHSDGMRKVRLGPVDGLPSNPDYGKNGPRGNTSDKNRSVFDAVTLDASPVYREPGSIIMRRIETLWSARISKSSSFAKGKYDVGELKDAEAASNVLSSRYGATTS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP025408_1	1.1\|2312942\|21\|NZ_CP025408\|CRT	2312942-2312962	21	NZ_CP025410.1	81147-81167	2	0.905

1. spacer 1.1|2312942|21|NZ_CP025408|CRT matches to position: 81147-81167, mismatch: 2, identity: 0.905

gctgccgccgcaacaagatca	CRISPR spacer
gcagccgccgcaacaagttca	Protospacer
** ************** ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025408_1	1.2\|2312984\|25\|NZ_CP025408\|CRT	2312984-2313008	25	NZ_CP037442	Klebsiella sp. PO552 plasmid p1, complete sequence	133437-133461	4	0.84
NZ_CP025408_1	1.2\|2312984\|25\|NZ_CP025408\|CRT	2312984-2313008	25	NZ_CP013712	Klebsiella pneumoniae strain J1 plasmid 1, complete sequence	10663-10687	4	0.84
NZ_CP025408_1	1.2\|2312984\|25\|NZ_CP025408\|CRT	2312984-2313008	25	NZ_CP026186	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence	327127-327151	4	0.84
NZ_CP025408_1	1.2\|2312984\|25\|NZ_CP025408\|CRT	2312984-2313008	25	NZ_CP028549	Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence	141392-141416	4	0.84
NZ_CP025408_1	1.2\|2312984\|25\|NZ_CP025408\|CRT	2312984-2313008	25	NZ_CP024507	Klebsiella pneumoniae strain KSB2_1B plasmid unnamed1, complete sequence	129566-129590	4	0.84
NZ_CP025408_1	1.2\|2312984\|25\|NZ_CP025408\|CRT	2312984-2313008	25	NZ_CP031818	Klebsiella pneumoniae strain INF235-sc-2280127 plasmid unnamed1, complete sequence	92750-92774	4	0.84
NZ_CP025408_1	1.2\|2312984\|25\|NZ_CP025408\|CRT	2312984-2313008	25	NZ_CP021958	Klebsiella pneumoniae strain AR_0139 plasmid tig00000002_u	34475-34499	4	0.84
NZ_CP025408_1	1.2\|2312984\|25\|NZ_CP025408\|CRT	2312984-2313008	25	NZ_CP017451	Klebsiella sp. LTGPAF-6F plasmid unnamed1, complete sequence	34303-34327	4	0.84
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NC_007764	Rhizobium etli CFN 42 plasmid p42c, complete sequence	109083-109114	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP020908	Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence	119501-119532	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP013597	Rhizobium sp. N741 plasmid pRspN741b, complete sequence	167077-167108	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NC_021907	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence	123875-123906	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP013501	Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence	167443-167474	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP013507	Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence	167077-167108	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP013518	Rhizobium sp. N113 plasmid pRspN113a, complete sequence	167443-167474	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP013491	Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence	167446-167477	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	188328-188359	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP013496	Rhizobium sp. N621 plasmid pRspN621a, complete sequence	167446-167477	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP013591	Rhizobium sp. N871 plasmid pRspN871a, complete sequence	167446-167477	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP013603	Rhizobium sp. N731 plasmid pRspN731b, complete sequence	188328-188359	8	0.75
NZ_CP025408_2	2.1\|3538757\|32\|NZ_CP025408\|CRISPRCasFinder	3538757-3538788	32	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	549463-549494	9	0.719
NZ_CP025408_2	2.3\|3538760\|35\|NZ_CP025408\|PILER-CR	3538760-3538794	35	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	549463-549497	9	0.743

1. spacer 1.2|2312984|25|NZ_CP025408|CRT matches to NZ_CP037442 (Klebsiella sp. PO552 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcgatcctgctatctgtcggcgaca	CRISPR spacer
gcgatcctgcactctgtcggcgagt	Protospacer
**********  ***********

2. spacer 1.2|2312984|25|NZ_CP025408|CRT matches to NZ_CP013712 (Klebsiella pneumoniae strain J1 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.84

gcgatcctgctatctgtcggcgaca	CRISPR spacer
gcgatcctgcactctgtcggcgagt	Protospacer
**********  ***********

3. spacer 1.2|2312984|25|NZ_CP025408|CRT matches to NZ_CP026186 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence) position: , mismatch: 4, identity: 0.84

gcgatcctgctatctgtcggcgaca	CRISPR spacer
gcgatcctgcactctgtcggcgagt	Protospacer
**********  ***********

4. spacer 1.2|2312984|25|NZ_CP025408|CRT matches to NZ_CP028549 (Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence) position: , mismatch: 4, identity: 0.84

gcgatcctgctatctgtcggcgaca	CRISPR spacer
gcgatcctgcactctgtcggcgagt	Protospacer
**********  ***********

5. spacer 1.2|2312984|25|NZ_CP025408|CRT matches to NZ_CP024507 (Klebsiella pneumoniae strain KSB2_1B plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcgatcctgctatctgtcggcgaca	CRISPR spacer
gcgatcctgcactctgtcggcgagt	Protospacer
**********  ***********

6. spacer 1.2|2312984|25|NZ_CP025408|CRT matches to NZ_CP031818 (Klebsiella pneumoniae strain INF235-sc-2280127 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcgatcctgctatctgtcggcgaca	CRISPR spacer
gcgatcctgcactctgtcggcgagt	Protospacer
**********  ***********

7. spacer 1.2|2312984|25|NZ_CP025408|CRT matches to NZ_CP021958 (Klebsiella pneumoniae strain AR_0139 plasmid tig00000002_u) position: , mismatch: 4, identity: 0.84

gcgatcctgctatctgtcggcgaca	CRISPR spacer
gcgatcctgcactctgtcggcgagt	Protospacer
**********  ***********

8. spacer 1.2|2312984|25|NZ_CP025408|CRT matches to NZ_CP017451 (Klebsiella sp. LTGPAF-6F plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcgatcctgctatctgtcggcgaca	CRISPR spacer
gcgatcctgcactctgtcggcgagt	Protospacer
**********  ***********

9. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NC_007764 (Rhizobium etli CFN 42 plasmid p42c, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

10. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP020908 (Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

11. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP013597 (Rhizobium sp. N741 plasmid pRspN741b, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

12. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NC_021907 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

13. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP013501 (Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

14. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP013507 (Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

15. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP013518 (Rhizobium sp. N113 plasmid pRspN113a, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

16. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP013491 (Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

17. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP013513 (Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

18. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP013496 (Rhizobium sp. N621 plasmid pRspN621a, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

19. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP013591 (Rhizobium sp. N871 plasmid pRspN871a, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

20. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP013603 (Rhizobium sp. N731 plasmid pRspN731b, complete sequence) position: , mismatch: 8, identity: 0.75

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
cggcgcttttcgtcgtatcgatggtggtcttc	Protospacer
 * .***** *************.**** * .

21. spacer 2.1|3538757|32|NZ_CP025408|CRISPRCasFinder matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 9, identity: 0.719

agctgctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
ccgcacttttcgtcgtatcgatggtggtgttc	Protospacer
   ..**** *************.****** .

22. spacer 2.3|3538760|35|NZ_CP025408|PILER-CR matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 9, identity: 0.743

acaagctg--ctttgcgtcgtatcgatgatggtgtgt	CRISPR spacer
--cggccgcacttttcgtcgtatcgatggtggtgttc	Protospacer
   .**.*  **** *************.****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

35453 : 81620

Tupanvirus(25.0%)

tRNA,capsid,transposase,head,integrase,protease,terminase

attL 71279:71328|attR 81788:81837

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101458712.1\|35453_36299_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	2.6e-23	29.0
WP_101458713.1\|36325_37455_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.9e-55	40.9
WP_157994738.1\|37879_38758_-	hypothetical protein	NA	NA	NA	NA
WP_101461744.1\|39633_40266_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA
WP_101461745.1\|40734_41166_-	glyoxalase	NA	NA	NA	NA
WP_101458715.1\|41395_42016_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_101458716.1\|42236_42689_-	Phasin	NA	NA	NA	NA
WP_101458717.1\|42858_45285_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_101461746.1\|45431_46763_+	polyhydroxyalkanoate depolymerase	NA	NA	NA	NA
WP_101458718.1\|46884_47358_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_101458719.1\|47369_48332_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_101458720.1\|48344_49088_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_101458721.1\|49289_51236_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	4.3e-114	36.7
WP_101458722.1\|51446_51653_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.9e-12	53.7
WP_101461747.1\|51767_53255_+	acyl--CoA ligase	A0A2K9KZV5	Tupanvirus	1.7e-09	22.4
WP_101458723.1\|53232_53874_+	DsbA family oxidoreductase	NA	NA	NA	NA
WP_101461748.1\|53962_55168_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_101458724.1\|55245_56019_-	sugar ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	1.9e-09	27.8
WP_101458725.1\|56015_57089_-	ABC transporter permease	NA	NA	NA	NA
WP_101458726.1\|57170_58199_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_101458727.1\|58317_59445_+	ROK family transcriptional regulator	NA	NA	NA	NA
WP_101458728.1\|59467_60895_+	xylulokinase	NA	NA	NA	NA
WP_101458729.1\|61039_61660_+	30S ribosomal protein S4	NA	NA	NA	NA
WP_101458730.1\|62047_62311_-	hypothetical protein	NA	NA	NA	NA
WP_101458731.1\|62418_65856_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_101458732.1\|65897_66455_-	hypothetical protein	NA	NA	NA	NA
WP_101458733.1\|66525_67521_+	porphobilinogen synthase	NA	NA	NA	NA
WP_101458734.1\|67591_68254_+	twin-arginine translocation pathway signal	NA	NA	NA	NA
WP_101458735.1\|68373_69126_-	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA
WP_101458736.1\|69226_69892_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_101461749.1\|69923_70541_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_101458737.1\|70712_71036_+	TIGR02300 family protein	NA	NA	NA	NA
71279:71328	attL	NA	NA	NA	NA
WP_101458738.1\|71409_71913_-	hypothetical protein	NA	NA	NA	NA
WP_101458739.1\|71909_72422_-	hypothetical protein	NA	NA	NA	NA
WP_101458740.1\|72425_73502_-	hypothetical protein	NA	NA	NA	NA
WP_101458741.1\|73501_74056_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_101458742.1\|74055_75291_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_101458743.1\|75299_75635_-	HNH endonuclease	NA	NA	NA	NA
WP_157994739.1\|75625_77254_-\|terminase	terminase	NA	NA	NA	NA
WP_157994740.1\|77250_77805_-	hypothetical protein	NA	NA	NA	NA
WP_101458745.1\|78011_79139_-	AAA family ATPase	A0A1B2LRQ1	Wolbachia_phage	3.9e-35	33.4
WP_101458746.1\|79135_79489_-	hypothetical protein	NA	NA	NA	NA
WP_101458747.1\|79488_79692_-	transcriptional regulator	NA	NA	NA	NA
WP_101458748.1\|79782_80397_-	hypothetical protein	NA	NA	NA	NA
WP_101458749.1\|80399_81620_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	2.5e-27	27.1
81788:81837	attR	NA	NA	NA	NA

DBSCAN-SWA_2

416780 : 468727

Emiliania_huxleyi_virus(19.23%)

portal,capsid,transposase,head,tail,integrase,terminase

attL 420797:420820|attR 472626:472649

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101458713.1\|416780_417910_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.9e-55	40.9
WP_157994757.1\|418127_419153_+	restriction endonuclease	NA	NA	NA	NA
WP_101459018.1\|419401_419749_+	hypothetical protein	NA	NA	NA	NA
WP_101459019.1\|419750_420143_+	hypothetical protein	NA	NA	NA	NA
WP_101459020.1\|420144_420765_+	hypothetical protein	NA	NA	NA	NA
420797:420820	attL	NA	NA	NA	NA
WP_101459021.1\|421480_422824_-	SPASM domain-containing protein	NA	NA	NA	NA
WP_157994758.1\|422820_423432_-	hypothetical protein	NA	NA	NA	NA
WP_101459023.1\|423964_425314_-	hypothetical protein	NA	NA	NA	NA
WP_101459024.1\|426455_427721_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	2.6e-27	28.9
WP_101459025.1\|428274_428532_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_101459026.1\|428531_428768_+	hypothetical protein	NA	NA	NA	NA
WP_101459027.1\|428764_429160_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_101459028.1\|429156_430107_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_101459029.1\|430103_430778_+	hypothetical protein	G8DGC1	Emiliania_huxleyi_virus	3.4e-34	39.4
WP_101459030.1\|430862_433964_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_101459031.1\|433956_435135_-	AAA family ATPase	NA	NA	NA	NA
WP_101461804.1\|435131_436229_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	2.0e-23	44.8
WP_101459032.1\|436279_437824_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.9e-105	42.2
WP_074556260.1\|437820_438009_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_101459033.1\|438528_439782_+	site-specific DNA-methyltransferase	A0A0A8ILE7	Aurantimonas_phage	3.6e-122	53.3
WP_101459034.1\|439943_441737_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_101459035.1\|441827_442361_-	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	5.6e-16	35.3
WP_101459036.1\|442461_442689_-	hypothetical protein	NA	NA	NA	NA
WP_101459037.1\|442811_443399_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	1.5e-17	37.0
WP_101459038.1\|443346_445389_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	4.8e-209	57.2
WP_101459039.1\|445392_445605_+	hypothetical protein	K4HZB1	Acidithiobacillus_phage	2.4e-07	47.1
WP_101459040.1\|445608_447126_+\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	5.6e-170	66.0
WP_101459041.1\|447125_448535_+	S49 family peptidase	A0A068CE01	Rhizobium_phage	5.9e-65	49.3
WP_101459042.1\|448561_448942_+\|head	head decoration protein	K4ICP8	Acidithiobacillus_phage	4.7e-25	50.0
WP_101459043.1\|448994_450017_+\|capsid	major capsid protein	K4I3Z3	Acidithiobacillus_phage	6.8e-103	55.7
WP_101459044.1\|450016_450331_+	hypothetical protein	NA	NA	NA	NA
WP_101459045.1\|450327_450957_+	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	3.6e-54	54.4
WP_157994759.1\|451039_451753_+	hypothetical protein	NA	NA	NA	NA
WP_101459047.1\|451812_453588_-	hypothetical protein	NA	NA	NA	NA
WP_101459048.1\|453675_454095_+	acyl-CoA transferase	G8DH50	Emiliania_huxleyi_virus	3.1e-38	57.9
WP_157994760.1\|454102_454552_-	hypothetical protein	NA	NA	NA	NA
WP_101459050.1\|454665_455604_+	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	1.4e-94	54.8
WP_101459051.1\|455603_456053_+	hypothetical protein	NA	NA	NA	NA
WP_101459052.1\|456049_456259_+	hypothetical protein	G8DH53	Emiliania_huxleyi_virus	1.3e-05	64.3
WP_101459053.1\|456260_458444_+\|tail	phage tail tape-measure protein	A0A0K1LLC2	Rhodobacter_phage	4.3e-14	31.2
WP_101459054.1\|458459_459086_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	3.9e-61	55.3
WP_101459055.1\|459082_459967_+	DUF2163 domain-containing protein	F4YXU3	Roseobacter_phage	1.1e-56	39.2
WP_101459056.1\|460041_460791_-	hypothetical protein	NA	NA	NA	NA
WP_101459057.1\|460830_461301_+	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	5.4e-31	47.0
WP_101459058.1\|461313_465279_+	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	7.1e-265	41.3
WP_101459059.1\|465297_466374_+	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	1.3e-48	37.9
WP_101459060.1\|466370_466658_+	hypothetical protein	NA	NA	NA	NA
WP_101459061.1\|466747_467422_+	DUF882 domain-containing protein	A0A0K1LLY2	Rhodobacter_phage	3.5e-39	48.7
WP_101459062.1\|467421_467673_+	hypothetical protein	NA	NA	NA	NA
WP_101459063.1\|467581_467833_+	hypothetical protein	NA	NA	NA	NA
WP_101461805.1\|467842_468727_-	SOS response-associated peptidase	A0A291AUP1	Sinorhizobium_phage	1.2e-34	42.1
472626:472649	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1313504 : 1374211

Acidithiobacillus_phage(18.52%)

portal,capsid,transposase,head,tail,integrase,terminase

attL 1340533:1340555|attR 1342905:1342927

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101459756.1\|1313504_1314431_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_157994797.1\|1314824_1315397_+	hypothetical protein	NA	NA	NA	NA
WP_157994798.1\|1315398_1316463_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_101459759.1\|1316452_1318096_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_157994799.1\|1318109_1318550_+	hypothetical protein	NA	NA	NA	NA
WP_101459761.1\|1318555_1318993_+	hypothetical protein	NA	NA	NA	NA
WP_101459762.1\|1319809_1322131_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	6.4e-40	27.5
WP_101459763.1\|1322127_1322817_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_101459764.1\|1322818_1323232_+	hypothetical protein	NA	NA	NA	NA
WP_101459765.1\|1323231_1324272_+	hypothetical protein	NA	NA	NA	NA
WP_101459766.1\|1324299_1324788_+	hypothetical protein	NA	NA	NA	NA
WP_101459767.1\|1324784_1325636_+	hypothetical protein	NA	NA	NA	NA
WP_101459768.1\|1325654_1325936_+	hypothetical protein	NA	NA	NA	NA
WP_101458713.1\|1326037_1327167_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.9e-55	40.9
WP_101459769.1\|1328652_1329093_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_101459770.1\|1329181_1331455_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.4e-127	43.4
WP_101461911.1\|1331510_1332068_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_101461912.1\|1332132_1334409_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.3e-77	33.7
WP_101459771.1\|1334596_1334878_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA
WP_101459772.1\|1334877_1335198_+	hypothetical protein	NA	NA	NA	NA
WP_101459773.1\|1335290_1335770_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_101459774.1\|1335773_1336229_+	cytochrome c	NA	NA	NA	NA
WP_101459775.1\|1336267_1336540_+	hypothetical protein	NA	NA	NA	NA
WP_101459776.1\|1336568_1337219_-	L,D-transpeptidase	NA	NA	NA	NA
WP_101461913.1\|1337300_1337786_-	DUF305 domain-containing protein	NA	NA	NA	NA
WP_101459777.1\|1337846_1338461_-	DsbA family protein	NA	NA	NA	NA
WP_101459778.1\|1338473_1339976_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
1340533:1340555	attL	NA	NA	NA	NA
WP_101461914.1\|1340630_1341902_+\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	2.7e-32	29.6
WP_101459780.1\|1341929_1342526_-	hypothetical protein	NA	NA	NA	NA
WP_101461915.1\|1342997_1343258_+	XRE family transcriptional regulator	NA	NA	NA	NA
1342905:1342927	attR	NA	NA	NA	NA
WP_101459781.1\|1343263_1343524_+	hypothetical protein	NA	NA	NA	NA
WP_101459782.1\|1343520_1343919_+	nuclease	NA	NA	NA	NA
WP_101459783.1\|1343915_1344881_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_101459784.1\|1344877_1345579_+	hypothetical protein	G8DGC1	Emiliania_huxleyi_virus	1.7e-41	44.3
WP_101459785.1\|1345979_1347233_+	site-specific DNA-methyltransferase	A0A0A8ILE7	Aurantimonas_phage	1.7e-124	54.4
WP_101459786.1\|1347237_1348335_+	DNA cytosine methyltransferase	A0A0F7L3T9	uncultured_marine_virus	3.8e-35	46.5
WP_101459787.1\|1348482_1349469_-	hypothetical protein	NA	NA	NA	NA
WP_101459788.1\|1349606_1350137_-	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	6.8e-14	33.5
WP_101459789.1\|1350234_1350480_-	hypothetical protein	NA	NA	NA	NA
WP_101461916.1\|1350476_1350665_-	hypothetical protein	NA	NA	NA	NA
WP_101459790.1\|1350785_1351382_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	3.9e-18	37.4
WP_101459791.1\|1351326_1353390_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	4.9e-209	57.5
WP_101459792.1\|1353393_1353606_+	hypothetical protein	K4HZB1	Acidithiobacillus_phage	1.4e-07	47.1
WP_101459793.1\|1353609_1355139_+\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	1.0e-171	66.0
WP_101459794.1\|1355138_1356548_+	S49 family peptidase	A0A068CE01	Rhizobium_phage	1.3e-64	48.2
WP_101459795.1\|1356574_1356955_+\|head	head decoration protein	K4ICP8	Acidithiobacillus_phage	4.7e-25	50.0
WP_101459043.1\|1357007_1358030_+\|capsid	major capsid protein	K4I3Z3	Acidithiobacillus_phage	6.8e-103	55.7
WP_101459044.1\|1358029_1358344_+	hypothetical protein	NA	NA	NA	NA
WP_101459796.1\|1358340_1358973_+	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	2.8e-54	54.4
WP_157994800.1\|1359009_1359882_-	hypothetical protein	NA	NA	NA	NA
WP_101459798.1\|1359957_1360377_+	acyl-CoA transferase	G8DH50	Emiliania_huxleyi_virus	5.0e-36	55.7
WP_101459799.1\|1360402_1361341_+	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	7.4e-96	55.7
WP_101459800.1\|1361345_1361795_+	hypothetical protein	NA	NA	NA	NA
WP_101459801.1\|1361821_1362001_+	hypothetical protein	NA	NA	NA	NA
WP_101459802.1\|1362002_1364186_+\|tail	phage tail tape-measure protein	A0A0K1LLC2	Rhodobacter_phage	7.1e-17	43.9
WP_101459803.1\|1364204_1364831_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	9.7e-60	54.4
WP_101459804.1\|1364827_1365712_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	7.5e-66	44.9
WP_101459805.1\|1365708_1366143_+	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	6.8e-28	44.8
WP_101459806.1\|1366155_1370118_+	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	3.9e-271	41.5
WP_101459807.1\|1370136_1371213_+	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	1.4e-50	38.6
WP_101459808.1\|1371209_1371497_+	hypothetical protein	NA	NA	NA	NA
WP_101459809.1\|1371589_1372264_+	DUF882 domain-containing protein	A0A0K1LLY2	Rhodobacter_phage	2.7e-39	50.0
WP_101459810.1\|1372263_1372515_+	hypothetical protein	NA	NA	NA	NA
WP_101459811.1\|1372423_1372675_+	hypothetical protein	NA	NA	NA	NA
WP_101459812.1\|1372984_1374211_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	7.8e-122	55.9

DBSCAN-SWA_4

2601874 : 2636240

Paracoccus_phage(20.0%)

portal,tRNA,capsid,head,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101460805.1\|2601874_2603461_+\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_101460806.1\|2603589_2605884_+	hypothetical protein	A0A2I7SAR4	Vibrio_phage	3.9e-05	32.9
WP_101460807.1\|2606149_2608105_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	2.2e-86	39.8
WP_101460808.1\|2608212_2608470_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_101460809.1\|2608479_2610288_+	cation acetate symporter	NA	NA	NA	NA
WP_101460810.1\|2610346_2612158_+	cyclic nucleotide-binding/CBS domain-containing protein	NA	NA	NA	NA
WP_101460811.1\|2612154_2612652_+	hypothetical protein	NA	NA	NA	NA
WP_101460812.1\|2612651_2613023_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.7e-11	30.8
WP_101460813.1\|2613016_2614978_+	3'-5' exonuclease	A0A1P8VWC8	Flavobacterium_phage	2.4e-11	36.1
WP_101460814.1\|2614986_2615490_-	hypothetical protein	NA	NA	NA	NA
WP_101460815.1\|2615552_2616272_-	fatty acid hydroxylase	NA	NA	NA	NA
WP_101462073.1\|2616971_2617982_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_101460816.1\|2618103_2619366_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_101460817.1\|2619365_2620547_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_101460818.1\|2620660_2621101_+	hypothetical protein	NA	NA	NA	NA
WP_157994854.1\|2621389_2621818_+	permease	NA	NA	NA	NA
WP_101460820.1\|2621768_2623115_+	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	4.5e-78	40.4
WP_101460821.1\|2623260_2624445_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	4.8e-60	38.4
WP_101462074.1\|2624452_2624686_+	hypothetical protein	NA	NA	NA	NA
WP_101460822.1\|2624689_2625226_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.2e-36	48.0
WP_101462075.1\|2625321_2626485_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	1.2e-66	45.3
WP_101460823.1\|2626659_2627277_+	hypothetical protein	NA	NA	NA	NA
WP_101460824.1\|2627276_2627615_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_101460825.1\|2627611_2628031_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_101460826.1\|2628043_2628457_+\|tail	phage major tail protein, TP901-1 family	A0A0C5AMZ4	Paenibacillus_phage	1.0e-04	30.0
WP_101460827.1\|2628456_2628771_+	gene transfer agent family protein	NA	NA	NA	NA
WP_101460828.1\|2628767_2628971_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_101460829.1\|2629015_2629672_+\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	1.1e-08	30.2
WP_101462076.1\|2629685_2630318_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	2.1e-54	46.4
WP_101460830.1\|2630314_2631214_+	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	1.1e-45	38.7
WP_101460831.1\|2631206_2631635_+	peptidase	F4YXU4	Roseobacter_phage	1.1e-33	48.2
WP_101460832.1\|2631658_2635540_+	host specificity protein	A0A0B5A7K5	Paracoccus_phage	5.0e-215	36.0
WP_101460833.1\|2635526_2636240_+	DUF2793 domain-containing protein	A0A0K1LM54	Rhodobacter_phage	1.9e-19	43.8

DBSCAN-SWA_5

3185427 : 3236979

Bacillus_virus(16.67%)

tRNA,capsid,head,transposase,integrase,holin,protease,terminase

attL 3224711:3224725|attR 3237617:3237631

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101461274.1\|3185427_3186126_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_101461275.1\|3186281_3186914_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.8e-58	59.0
WP_101461276.1\|3187072_3188338_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.8e-136	59.6
WP_101461277.1\|3188434_3188806_+	RidA family protein	NA	NA	NA	NA
WP_101461278.1\|3188898_3189282_+	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_101461279.1\|3189282_3189747_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_101461280.1\|3189743_3190106_+	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_101461281.1\|3190072_3190702_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_101461282.1\|3190704_3192051_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_101462156.1\|3192058_3192571_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_101461283.1\|3192806_3193127_-	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_101461284.1\|3193123_3193885_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_101461285.1\|3193969_3194437_+	DUF302 domain-containing protein	NA	NA	NA	NA
WP_101461286.1\|3194440_3194899_-	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_101461287.1\|3194895_3195612_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_101461288.1\|3195750_3196134_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_101461289.1\|3196443_3197481_+	calcium-binding protein	NA	NA	NA	NA
WP_101462157.1\|3197707_3198520_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_101461290.1\|3198547_3199708_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_101461291.1\|3199900_3200911_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-21	32.1
WP_101461292.1\|3200907_3201756_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_101461293.1\|3201844_3202786_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_101461294.1\|3202880_3203450_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_101461295.1\|3203446_3204895_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_101462158.1\|3204881_3205535_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_101462159.1\|3205534_3207148_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	3.8e-60	32.0
WP_101461296.1\|3207456_3208569_-\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	6.1e-41	35.1
WP_101461297.1\|3208565_3208745_-	hypothetical protein	NA	NA	NA	NA
WP_101461298.1\|3208748_3209345_-	hypothetical protein	NA	NA	NA	NA
WP_157994882.1\|3209463_3209652_-	hypothetical protein	NA	NA	NA	NA
WP_101461300.1\|3209755_3209956_-	hypothetical protein	NA	NA	NA	NA
WP_101462160.1\|3209952_3210141_-	hypothetical protein	NA	NA	NA	NA
WP_101461302.1\|3210465_3210987_+	hypothetical protein	NA	NA	NA	NA
WP_101461303.1\|3211214_3212300_-	hypothetical protein	NA	NA	NA	NA
WP_101461304.1\|3212299_3212854_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_101461305.1\|3212853_3214089_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_101461306.1\|3214097_3214433_-	HNH endonuclease	NA	NA	NA	NA
WP_157994883.1\|3214423_3216067_-\|terminase	terminase	NA	NA	NA	NA
WP_101461307.1\|3216063_3216621_-	hypothetical protein	NA	NA	NA	NA
WP_101462162.1\|3217116_3217875_-	hypothetical protein	A0A0B4ZZW7	Achromobacter_phage	3.8e-10	23.0
WP_101461308.1\|3218042_3218267_-	hypothetical protein	NA	NA	NA	NA
WP_101461309.1\|3218263_3218638_-	hypothetical protein	NA	NA	NA	NA
WP_101461310.1\|3218900_3219644_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	1.6e-45	44.5
WP_101461311.1\|3220990_3221401_-	hypothetical protein	NA	NA	NA	NA
WP_101458713.1\|3222111_3223240_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.9e-55	40.9
WP_101461312.1\|3223377_3224070_-	hypothetical protein	NA	NA	NA	NA
WP_157994884.1\|3224069_3225245_-	hypothetical protein	NA	NA	NA	NA
3224711:3224725	attL	NA	NA	NA	NA
WP_101461314.1\|3225311_3226139_-	hypothetical protein	NA	NA	NA	NA
WP_101461315.1\|3226138_3226498_-	hypothetical protein	NA	NA	NA	NA
WP_101461316.1\|3226641_3227142_-	hypothetical protein	NA	NA	NA	NA
WP_101461317.1\|3227369_3229457_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.1e-38	29.5
WP_101461318.1\|3229468_3230218_+	hypothetical protein	NA	NA	NA	NA
WP_157994885.1\|3230263_3230734_+	hypothetical protein	NA	NA	NA	NA
WP_101461319.1\|3230726_3231029_+	hypothetical protein	G4KK81	Yersinia_phage	1.1e-13	48.4
WP_101461320.1\|3231086_3231578_-	hypothetical protein	NA	NA	NA	NA
WP_101461321.1\|3231574_3231916_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_101461322.1\|3232289_3233897_+	recombinase family protein	NA	NA	NA	NA
WP_101461323.1\|3233893_3234223_-	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	4.1e-17	42.5
WP_101461324.1\|3234380_3235538_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_101461325.1\|3235818_3236979_+\|integrase	integrase family protein	E7DYQ6	Enterobacteria_phage	3.9e-06	24.9
3237617:3237631	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3561070 : 3570123

Acanthocystis_turfacea_Chlorella_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101461593.1\|3561070_3562003_-	NAD-dependent epimerase/dehydratase family protein	M1HRM8	Acanthocystis_turfacea_Chlorella_virus	2.1e-50	38.3
WP_101461594.1\|3562002_3563436_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.5e-47	28.4
WP_101461595.1\|3563432_3564506_-	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	9.2e-127	64.4
WP_101461596.1\|3564518_3565691_-	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES46	Bathycoccus_sp._RCC1105_virus	5.7e-37	29.2
WP_101461597.1\|3565808_3567095_-	guanine deaminase	NA	NA	NA	NA
WP_101461598.1\|3567082_3567820_-	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	2.5e-22	33.1
WP_101461599.1\|3567816_3570123_-	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	4.8e-213	52.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP025411