CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP025298	Stenotrophomonas maltophilia strain CSM2 chromosome, complete genome	8 crisprs	DEDDh,csa3,WYL,cas3,Cas9_archaeal,DinG	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025298_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025298_1

543463-543563

Orphan

Consensus_repeat	Method
CCATCCACGCATGGCGTGGATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025298_1

>merge|NZ_CP025298|1|543463-543563|CRISPRCasFinder
CCATCCACGCATGGCGTGGATCTACTGGAAAGGGCCACGCATGGATATGCGTGACCTCGTCATCGGCCTGGCCTCATGCCATCCACGCATGGCGTGGATTT

>NZ_CP025298|1|1|543463-543563|CRISPRCasFinder
CCATCCACGCATGGCGTGGATCT	ACTGGAAAGGGCCACGCATGGATATGCGTGACCTCGTCATCGGCCTGGCCTCATG
CCATCCACGCATGGCGTGGATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025298.1\|WP_101764878.1\|551288_551927_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_CP025298.1\|WP_075675473.1\|540312_540879_-\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666
NZ_CP025298.1\|WP_101764869.1\|541123_543112_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236842
NZ_CP025298.1\|WP_101764870.1\|543155_543446_+\|DUF3247-family-protein	unknown	unknown	gnl\|CDD\|371627
NZ_CP025298.1\|WP_014035851.1\|547714_548230_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
NZ_CP025298.1\|WP_101764867.1\|536447_536822_+\|classical-arabinogalactan-protein-4	unknown	unknown	gnl\|CDD\|237030
NZ_CP025298.1\|WP_101764866.1\|535839_536307_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP025298.1\|WP_032128744.1\|536966_537149_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_101764868.1\|539118_540186_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP025298.1\|WP_004140558.1\|537206_537686_-\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP025298.1\|WP_101764873.1\|545786_546470_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP025298.1\|WP_005407915.1\|534893_535748_-\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
NZ_CP025298.1\|WP_005407925.1\|543606_543870_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_101764875.1\|548420_549515_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP025298.1\|WP_101764871.1\|544027_545092_+\|methyltransferase	unknown	unknown	gnl\|CDD\|368316
NZ_CP025298.1\|WP_014035841.1\|537835_539140_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP025298.1\|WP_101764876.1\|549579_550134_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_101764872.1\|545088_545790_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP025298.1\|WP_101764874.1\|546506_547715_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_CP025298.1\|WP_101764877.1\|550285_551197_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825

Protein	Function_ID	Function_description	E-value
NZ_CP025298.1\|WP_101764878.1\|551288_551927_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	2.67597e-68
NZ_CP025298.1\|WP_075675473.1\|540312_540879_-\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	3.96449e-65
NZ_CP025298.1\|WP_101764869.1\|541123_543112_+\|PAS-domain-S-box-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	3.39182e-64
NZ_CP025298.1\|WP_101764870.1\|543155_543446_+\|DUF3247-family-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	1.46482e-22
NZ_CP025298.1\|WP_014035851.1\|547714_548230_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	1.46551e-120
NZ_CP025298.1\|WP_101764867.1\|536447_536822_+\|classical-arabinogalactan-protein-4	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	1.17723e-05
NZ_CP025298.1\|WP_101764866.1\|535839_536307_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	4.56892e-77
NZ_CP025298.1\|WP_101764868.1\|539118_540186_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP025298.1\|WP_004140558.1\|537206_537686_-\|AsnC-family-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.64371e-69
NZ_CP025298.1\|WP_101764873.1\|545786_546470_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	6.34545e-60
NZ_CP025298.1\|WP_005407915.1\|534893_535748_-\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	2.19995e-164
NZ_CP025298.1\|WP_101764875.1\|548420_549515_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP025298.1\|WP_101764871.1\|544027_545092_+\|methyltransferase	gnl\|CDD\|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	9.10426e-68
NZ_CP025298.1\|WP_014035841.1\|537835_539140_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP025298.1\|WP_101764872.1\|545088_545790_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	1.54278e-74
NZ_CP025298.1\|WP_101764874.1\|546506_547715_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP025298.1\|WP_101764877.1\|550285_551197_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.86426e-98

>NZ_CP025298.1|WP_101764870.1|543155_543446_+|DUF3247-family-protein
MSRIAPRIHTDPAQIARLEALLPQLEGETQVELTLHGGRRLLGTVAVKPTVQQYRNEAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>NZ_CP025298.1|WP_101764869.1|541123_543112_+|PAS-domain-S-box-protein
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSLLEPHHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLSTLLGEAIGAQELVAEGKALDVHLQLPEQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDLQLRADGNHWEITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHIPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAMTLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>NZ_CP025298.1|WP_075675473.1|540312_540879_-|DUF3016-domain-containing-protein
MNRSLATALLLAGALMAGSANAAPRAVTDPDAPRALQANGPVSVKWDDPAKFTEIRQSTNRFEAERGNWVQQLASYVQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWHGPRGSDIRIMRDIYPPRITLQYTLKDASGRIVDEGEAKLSDTGYLHNLGLKSDSDPLRYEKRLIDDWVKRQLTTQATAAR
>NZ_CP025298.1|WP_101764868.1|539118_540186_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEALVAFDSPRPLTVWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFARAIDGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDNTALTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGGLIGRVSMDMLTVDLTAHAQAGIGSVVELWGSAPTLSELAPRCGVSAYQLPCAVKRVAKVYV
>NZ_CP025298.1|WP_014035841.1|537835_539140_+|D-amino-acid-dehydrogenase
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQHENRTCVLPAR
>NZ_CP025298.1|WP_004140558.1|537206_537686_-|AsnC-family-transcriptional-regulator
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREAVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>NZ_CP025298.1|WP_032128744.1|536966_537149_+|hypothetical-protein
MSFVHWIAIMKNQQNRHPGKEPQGRNPQQQQQQQQQMEPQQPHKGGKQQEQRSQKHPQQR
>NZ_CP025298.1|WP_101764867.1|536447_536822_+|classical-arabinogalactan-protein-4
MKPTLPLLLMALLPALALAQVPTADPTATRSATTVAPAPVVPPPQAARPQPQVLPSPQPAQPIKSTGPAPIAPTPAPKPADKVYDRNGRIVPGVRPAGPNRVFDSRTGRYYDSVPAGDGQQIKR
>NZ_CP025298.1|WP_101764866.1|535839_536307_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MTAFDLTPPTATQTEALIAGLSSEERRVLLQHGTEAPFCGVFLDNKREGVYCCRLCALPLFRSSTKFDSGTGWPSFFAPFDPAHVREIRDTSHGMVRTEITCARCSSHLGHVFPDGPPPTYERHCLNSVSLSFTGNGEPWPDPLQRGGAESGVAG
>NZ_CP025298.1|WP_005407915.1|534893_535748_-|flagellar-motor-stator-protein-MotA
MLIIVGFLVVIISVIGGYLGAHGRLGALWQPYELVIIGGAALGAFLVGTPAKTVKQTLQAMVGVFKGPRYKQQDYIDVLSLLYELLNKARREGFMALEDHVERPAESALFGNYPKVQADHHLIDFITDCLRLMIGSNIEPHELEPLLELELEKHHAEAMAPSQVLTKVADGLPGFGIVAAVLGIVITMGSIGGDIVEVGGHVAGALVGTFLGILLGYGFVGPMAAAMEARAEQDSRIYESVKTALLACLRGYNPKIALEFARKTLPSNVRPAFSDFEQHLKTVK
>NZ_CP025298.1|WP_005407925.1|543606_543870_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>NZ_CP025298.1|WP_101764871.1|544027_545092_+|methyltransferase
MASSDDAPLQTLLLPFSQGALRWPEGPVAFLRARDGWPLREAAGNHEVHCEQSFAPFAQPLQQADGWTVSGQLDDGAGKGRYPLVLVLPPRQREEARALFARALALVAEGGRIVACQSNNEGACSGEGDLKQLTGLGGCLTKNHCRVYWTAPLQGQHDADLAKRWSALDAVRPIMGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRALPLRFLWQDVTAGIEPGYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEHTLNDSFGAVRVVAERDGFKLVEAVKGKGK
>NZ_CP025298.1|WP_101764872.1|545088_545790_+|pseudouridine-synthase
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHETIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDTRRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>NZ_CP025298.1|WP_101764873.1|545786_546470_+|HAD-family-phosphatase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSEAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIDAVAARCHELYEARTQTGLPLRPGILELLELLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPK
>NZ_CP025298.1|WP_101764874.1|546506_547715_-|beta-ketoacyl-ACP-synthase-I
MRRVVITGMGITSCLGNDLDTVSTALREGRSGITLLADHADAGLRSQVGGRVDLDLDALIDRKQKRFMSDAAAFAYLSMRDAIADAGLSPEQVSNLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVVDFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>NZ_CP025298.1|WP_014035851.1|547714_548230_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIHEDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPDAKLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>NZ_CP025298.1|WP_101764875.1|548420_549515_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRTQIREETRLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLPLEDLGEAIVQLAEKTWNATRKTERVGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALALRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEHGSSDSAGN
>NZ_CP025298.1|WP_101764876.1|549579_550134_-|hypothetical-protein
MKIKSVLVKLLLPITVLAAHPAFSQQVTPSTDPVVQAFAQHEGLSTQEADRRLRLRIAAGEELGRILEGMPDRFAGKSFSENPMIVTVRLTGTEPVPSRTVSTVHGTITYRFTVGATHSLTQLKQIVTSGKVAELFPKHQGIMIDGQRGVIVVELPSTDFERTHVDEEQKARRILSAPIELKKS
>NZ_CP025298.1|WP_101764877.1|550285_551197_-|MBL-fold-metallo-hydrolase
MRTAALLLPLALAATFTSAPLLAAPATAAPATATKSQLQLQTFHPGPQAMFSVSSVLIEGRHDAILVNAQFGASDARKLVELIRASGKQLTTIYISHGDPDYYFGLATLQDAFPQARIVATAQTVAHIQQTQAGKLAYWGPKMGADVPARIVVPQVLDGDALQLEGQRLPLIGLDGPTPDRTVLWVPSLRAIVGGIPVVAGEHVWMADTQTPKSHADWLQTLQRLQALKPKVVVPGHYAPGAALDASALRFTADYIRAFDVETAKAKDSAALVKAMQARYPKLDGVASLELSAKVAKGEMQWP
>NZ_CP025298.1|WP_101764878.1|551288_551927_-|NAD(P)H-binding-protein
MKIALVGSTGNIGRQIARHALARGHELTVIVRSAQDLPAELAGAHPVIASLDDPDALVAAIAGHDVLASAYGPRPGDDIGRVGEVAAQLAAAARKAGVPRLVVVGGAGSLEVAPGVQLVDTPTFPEAYKPYALAHREAFNRLQAVDDLDWTFFSPAAEIGPGEERGQYRVQPKAFLADASGHSRISYADYGAAFVAELEAHAYPKQIITAAY

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Crispr_ID: NZ_CP025298_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025298_2

754209-754303

Orphan

Consensus_repeat	Method
GCCATCCACGCGTGGCGTGGATCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025298_2

>merge|NZ_CP025298|2|754209-754303|CRISPRCasFinder
GCCATCCACGCGTGGCGTGGATCTACGTGTGGCAATGCGGTTGATGAAGGTGCGGTTCCGCGTGGTCATGCCATCCACGCGTGGCGTGGATCTAC

>NZ_CP025298|2|2|754209-754303|CRISPRCasFinder
GCCATCCACGCGTGGCGTGGATCTAC	GTGTGGCAATGCGGTTGATGAAGGTGCGGTTCCGCGTGGTCAT
GCCATCCACGCGTGGCGTGGATCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025298.1\|WP_049425078.1\|752936_753494_+\|DUF3228-family-protein	unknown	unknown	gnl\|CDD\|371591
NZ_CP025298.1\|WP_101764935.1\|748548_749475_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP025298.1\|WP_049444804.1\|746892_747477_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP025298.1\|WP_049444392.1\|767600_768659_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP025298.1\|WP_101764937.1\|751282_752800_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP025298.1\|WP_049444793.1\|754344_754830_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_004154241.1\|755582_757028_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|377487
NZ_CP025298.1\|WP_014035991.1\|743020_745753_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP025298.1\|WP_101764936.1\|750544_751276_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP025298.1\|WP_049444805.1\|745866_746820_+\|Nudix-family-hydrolase	unknown	unknown	gnl\|CDD\|236361
NZ_CP025298.1\|WP_049444388.1\|764931_766647_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|153248
NZ_CP025298.1\|WP_014036002.1\|754829_755303_-\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
NZ_CP025298.1\|WP_049444801.1\|747517_748345_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	unknown	unknown	gnl\|CDD\|273212
NZ_CP025298.1\|WP_014036006.1\|762736_763243_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP025298.1\|WP_101764938.1\|753570_754206_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NZ_CP025298.1\|WP_049444384.1\|759957_762669_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP025298.1\|WP_101764939.1\|757268_759785_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP025298.1\|WP_101766373.1\|749501_750548_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225814
NZ_CP025298.1\|WP_049444386.1\|763382_764594_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP025298.1\|WP_014036008.1\|766643_767444_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343

Protein	Function_ID	Function_description	E-value
NZ_CP025298.1\|WP_049425078.1\|752936_753494_+\|DUF3228-family-protein	gnl\|CDD\|371591	pfam11539, DUF3228, Protein of unknown function (DUF3228). This family of proteins has no known function.	1.10434e-87
NZ_CP025298.1\|WP_101764935.1\|748548_749475_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.02054e-10
NZ_CP025298.1\|WP_049444804.1\|746892_747477_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	0.000615528
NZ_CP025298.1\|WP_049444392.1\|767600_768659_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	5.04184e-26
NZ_CP025298.1\|WP_101764937.1\|751282_752800_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	4.11154e-19
NZ_CP025298.1\|WP_004154241.1\|755582_757028_-\|adenosylhomocysteinase	gnl\|CDD\|377487	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NZ_CP025298.1\|WP_014035991.1\|743020_745753_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP025298.1\|WP_101764936.1\|750544_751276_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	6.62955e-51
NZ_CP025298.1\|WP_049444805.1\|745866_746820_+\|Nudix-family-hydrolase	gnl\|CDD\|236361	PRK08999, PRK08999, Nudix family hydrolase.	2.38061e-160
NZ_CP025298.1\|WP_049444388.1\|764931_766647_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	5.95827e-58
NZ_CP025298.1\|WP_014036002.1\|754829_755303_-\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	5.55434e-75
NZ_CP025298.1\|WP_049444801.1\|747517_748345_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	9.39681e-142
NZ_CP025298.1\|WP_014036006.1\|762736_763243_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	1.56219e-63
NZ_CP025298.1\|WP_101764938.1\|753570_754206_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	1.10516e-12
NZ_CP025298.1\|WP_049444384.1\|759957_762669_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP025298.1\|WP_101764939.1\|757268_759785_+\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.07587e-57
NZ_CP025298.1\|WP_101766373.1\|749501_750548_+\|hypothetical-protein	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.74542e-42
NZ_CP025298.1\|WP_049444386.1\|763382_764594_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP025298.1\|WP_014036008.1\|766643_767444_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.3167e-69

>NZ_CP025298.1|WP_101764938.1|753570_754206_+|energy-transducer-TonB
MAIWARMVLVLLAGTLPATPVLAAKPSVDIACSSLAAVPALRDAVVTALSMQPEGGRCVVEVEAANGKALLRQQRMLEVLTQHACAAPAEVSVDDTRLSLQLRLPKHCAARGSRDLFAGEGVAWKPARGVSPHYPPAAVQQGLSGRSLLKALIDAQGTVAAVIVETSSGHALLDEAAVDELRGWPFVRAEAESTVPELTIVRVPMRYALVE
>NZ_CP025298.1|WP_049425078.1|752936_753494_+|DUF3228-family-protein
MSIVLTDFARPRLFPRVPRGNTIQDCTAEQFEAHLNAHAPLKVLDGYAPFCKLFVYENWTSTRCLTVPVTEANRHQLRSGYEARNREELPVLVRWFEGVESPRANYLVVILYSAGQLAKEGSPIEADWGIVGCIYTAEPEEVPMAPITMMRNALGVEEGGSGVPLDREAYQRSVAFWENNANWRP
>NZ_CP025298.1|WP_101764937.1|751282_752800_-|amidohydrolase-family-protein
MDAARALPRSARRRRWPIALAILLLAPPVLFAAALLWPLSAPPLPEPGNSRVIVNARVVDVERGHVSEPTTVTVRNGTITAIGKVPRDTTMPVLDAGGRWLLPGFWDMHTHALQVSPQLQFPLMLANGITGTRDMMDCPQATDLLIACVADKRRWTAQAIAGQQVAPRFVQIASFYFEDPSLAPEAAAARARTYSARGIDALKVYNRLRADTYQRLATEAQQLRRPLVGHLPKAVPLEDAVQAGQRSFEHAHLFVRHCFDNAAAWRGGTLDSEDPTALAERMVGGYQPALCNEAFGVMQASGAAFVPTHVTREEDARARDPAFVDDPRLAYLDPLSRWAWRDDLQATVARYPGLRGEDALKAYFEHGLALTGAVHRAGVTVLVGTDTGLGGFRYHDELQWLRQAGLSQADVLRAATLQAARHLQLQASHGSVEVGKAADLVLLDGNPLHDTANTRRVHAVLLAGHLYDRPRLDALLAYARRQARSPAVMARLLWGFLTSPVSAEL
>NZ_CP025298.1|WP_101764936.1|750544_751276_+|response-regulator-transcription-factor
MSGMLRVLIVDDARLARQELRTLLSALPWVQCVGEADDVPAAREAIATLAPDLVLLDVQMPSGSGFDVLDGLETVPAVVFVTAYDTYAVRAFQANALDYLVKPVEAPRLLEALERARERDVVASGAPELRSTLGAQDQVFVREGERCWFVAVSEIRRLVVDGNYTRLWFRDQNALLTRSLSALEARLPQDLFFRANRNTLVNLRRIRGVSPSIGDGYDLALDDGSEVEVSRRQARELRERMAL
>NZ_CP025298.1|WP_101766373.1|749501_750548_+|hypothetical-protein
MPDSTSTLRFWLINTLGWALFCALSLAMTSTFGGGASSGGTLISVGLGVLLWGISAGVRALALRRRWWQRELGALVLRLALAVLLGALLAQLLLMAVLQPALALGWVDFGGQPGDFRPVARLAYLLNTVLLLGLWTALWAGLHSLRQARRAELERLRAEAERSALERDALRARLNPHFMFNALNNLRALILEDPERARDMVTRLSRTLRQALAHNRSEQVTLAEELAVVDDYLAIEAVHFEQRLQVRQQIDGDAMQAQLPAMALQLLVENAIKHGIASRPGGGEVQIRATLDNDVLRLQVDNPLSTGSEPTHGHGVGLAYLRAQLGARGRFVLQPVGDRMQALLEVPQ
>NZ_CP025298.1|WP_101764935.1|748548_749475_+|alpha/beta-hydrolase
MKIFLALWYAMKALARLAMIGMAMAVLGSGSAHAATGSTAGRVQVEVVGKGRPLLMIPGLNSSAEVWRETCRALKDVQCHLVQLPGFAGAVPADPRPVDFLSAMRDQLLAYVHDQKLDHPAVIGHSLGGVLTLQMAVKESDALGPLVIVDSLPFYAGMQNPQATARSVQPMAEQMRTAMLAADPASYQAQAEAALAPLTNSTARLPELKRWGHDSDRATTADAMYSLLVTDLRSEVAGIHSPTLVLGAWASYQALGATESSARAIFQSQYAALPGVRVELSATGHHFLMWDDPQWLRGQVQAFLDSHR
>NZ_CP025298.1|WP_049444801.1|747517_748345_-|methylenetetrahydrofolate-reductase-[NAD(P)H]
MTAISFEFYPPKTDEQRSQLDRAAARLKDYGPEYVSCTFGAGGSTLSYTSETVRHLNQHHGFDAAPHLSCVGGTRQEIRELLKLYRAIGCRRLVALRGDLPSGMGFPGDMRYAAELIDFIRDEHGDAFHIEVGAYPETHPQASDALADLKHFKAKIDAGADAAITQYFYNPDAYFHFVDAVRRLGVQVPITPGIMPIANFSQLRRFSEQCGAEIPRWISRKMQAYGDDAESVRAFGTEVVAKLCQRLIEGGAPGLHFYTLNLAKPTTSVLKLLHG
>NZ_CP025298.1|WP_049444804.1|746892_747477_-|DUF4124-domain-containing-protein
MKRFSFLLLLLSLCSASSVVHAQSPRLNRCTDAQGQSVYTDRPCDSVGAQSRLPPPAPTGSTLPRDTLGARCPRRLSELVEALRTGIVSHDVNRLSSLYLWGAVSDAGAQRILGQLESLARRPLVDVVPVYPSQGLASSQEEGQSPAAQGSDPEPPAARHPVGLRLEQTLPGSVSRASTVLGLRRQYGCFWITL
>NZ_CP025298.1|WP_049444805.1|745866_746820_+|Nudix-family-hydrolase
MPSPTRSIHVVAAVITDARGRVLLNRRTENRDMAGLWEFPGGKRESGETSEQALVRELREELGIEADVGPWLMDVPQRYPDKLLTLEVRHVRSWKGTPRGREGQAITWVAQDKLGRYSMPPADLPVVAALRQPDRYLITPAPADDAGGVQHWHDRLQQAVAAGQQRIQLRLPPEHPQRQAMIEQAVRAHRRGVQWLLNRDIALARALGVGVHLGSEQLLALQERPLPEGQLVAASCHDLEQLQAAQRLGCDFAVLGPVQATASHPEAAPLGWEAFAALRAQVSLPIYALGGMAAGHIAEARRHGGQGIAAIRGLWPG
>NZ_CP025298.1|WP_014035991.1|743020_745753_+|preprotein-translocase-subunit-SecA
MINSLLTRVFGSRNERQLRQLNRIVAKINALEPEIEKLSDEQLQAKTPEFKQRIAGGEALDKVLPEAFAVCREAGRRVLGMRHYDVQLIGGMVLHLGKIAEMRTGEGKTLVATLPVYLNALEGKGVHVVTVNDYLARRDAAQMGKLYNWLGLSVGVVYPGMPHSDKREAYAADITYGTNNEFGFDYLRDNMALSKADRYQRGLHYAIVDEVDSILIDEARTPLIISGPADDSPELYIRVNRVVPHLVKQEAEDGEGDFWVDEKGKQVHLSEAGMEHAEQLLVDAGILDGETEGLYAAQNLTVVHHLNAALRAHAIYQRDVDYIVRDGEVVIVDEFTGRTLAGRRWSDGLHQAVEAKEGVPVQRENQTLASITFQNLFRMYKKLSGMTGTADTEAFEFQSIYGLEVVVIPTNRPTIRKDSPDQVFLNRKGKFNAVLADIEECAKRGQPVLVGTTSIETSEMLSEHLSKAGVKHEVLNAKQHDREATIVANAGRPAAVTIATNMAGRGTDIVLGGSLEAEIHALGEDATDEQKAAVKAEWQKRHDAVKAAGGLHIVGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDNLMRIFASDWVQKAMRMMGMKEDDVIEDRLVSRQIEKAQRKVEAHNFDIRKNLLDFDDVNNDQRKVIYAQRDELLDAESVKANVDGIRDDVIFDIVARFVPPNSIDEQWDLRGLEATLESDFGLQMSLTDLVKEHEELDAEAIATKVQERVNQHFAEKEAGLGEETMRALEKHVMLTVLDQSWKEHLARMDYLRQGIYLRGYAQKQPKQEYKKEAFELFSDMLENVKREVVTLLARVRIRSDEEVQALEAAERQQVQARLSQSQFQHQDAGGYSADEEAAQVEAAQQGVATLQRDEPKIGRNDPCPCGSGKKYKHCHGQLS
>NZ_CP025298.1|WP_049444793.1|754344_754830_-|hypothetical-protein
MRWPWSAAPIPRLDDAQADVLLQDLLSRDGTRITDAARTVARLFSAPSLDALAAYAELIEQRCQGVALGGMLISNQAHLKAALRRLHYWHAREGCLCALNPGYPFFDPRRLVEQGQMQLRSVEEAEDGWGDCHIVTCEQCGQHWRAIDREYHYPWWEWIAA
>NZ_CP025298.1|WP_014036002.1|754829_755303_-|Cys-tRNA(Pro)-deacylase
MTPAINLLKREKIAHTVRSYVHDAHAESYGGEAVDKLGLDPAQVFKTLLASTEAHELLVAIVPVAGQLDLKALAEAAGCKKCEMAAADAAQRATGYLVGGISPLGQKKRLRTFLDASAEALPTLHVSAGRRGLEVELAPADLLRLTAGHYAAIGKSR
>NZ_CP025298.1|WP_004154241.1|755582_757028_-|adenosylhomocysteinase
MNAVAKTFSTEGDYKIRDITLADWGRKELDIAEHEMPGLMSIRRKYQAELPLKGVRVTGSLHMTIQTAVLIETLKDIGADVRWASCNIFSTQDHAAAAIAATGTPVFAWKGETLEEYWDCTLDALTFTLADGTLTGPELVVDDGGDVTLLIHKGYELENGSDWVNTASSSHEEQVIKNLLKRVAKERPGYWGRVVKDWKGVSEETTTGVHRLYQLAQAGTLLIPAINVNDSVTKSKFDNLYGCRESLADGLKRAMDVMLAGKVAVVCGYGDVGKGCAASLRAYGARVIVTEIDPICALQAAMEGYEVNTIESTLGRADLYVTTTGNKDIIRIEHLSAMKDQAIVCNIGHFDNEIQVDALVSFAGIKHVNIKPQVDKYIFPNGNAIFLLAEGRLVNLGCATGHPSFVMSNSFANQTLAQIDLWANKDSYEKKVYLLPKKLDEEVARLHLEKIGVKLTTLSQEQADYIGVPVEGPFKPDHYRY
>NZ_CP025298.1|WP_101764939.1|757268_759785_+|S9-family-peptidase
MSMHARRTRRWTGLVLSMGLLAVAPLAWAVAPQPAATQAQGVNGYELPSAALQAVVDAPRAPSLYLSPRRDVAALMQMPSLPSIQVVAQPELKLAGLRINPRTFSDSRFSFGEKLWLMNVADGKERPIGGLPAKLSIASVMWSPDQKWLAFNQVDAASGANELWLVDVAGGSARRLVAGLNTVIGSGYQWLPDSRGLVVFTRPANLGAAPAADGIPTGPAVQQTRQGDGVVSIRTYQDLLKNEADARQFDYYATTQPVEVSLDGTTRAIGAAGIFMGFSVSPDGRFVLRQPVQRPYSYVVPVSSFPRRIEVIDRASGKLVHTVAVRPLVEGLPTGNDAEVTGVRDIGWRGDAEATLVWAEAQDGGDPNKDAKVRDAVLMQAAPFDTPPVTLAQLGSRLAGISWGRGDLALLTESWWKTRKTKTWLIAPDNASAEPRLLWDRDAQDRYADPGRPLLASDERGRSLLQTSPDGSSLYLAGAGASPEGDRPFVDRFDIATGKATRLFHSQAPSYSLPAALLDNQGSSLLLSRESPDEPANFYVQSLADAGAAPRALTHFAHPLPQLKGVQKEQIRYKRKDGVDLTATLLLPPGYDPKRDGPRPLLMWAYPGEFKSAAAASQVTDSPYRFNAVSYWGPQAFLAKGYVVLASPSMPIIGEGDKEPNDTYIEQLVANAQAAVDEVVRRGVTDRDHIAIGGHSYGAFMTANLLAHTRLFKAGIARSGAYNRTLTPFGFQAEERNYWQAQDVYQKMAPFNYADRIKDPILFIHGVDDNNSGTFPIQSERMFAAVKGLGGTARLVMLPNESHAYRARESIMTMLAESERWLEQTIGPAGQGKAKKKR
>NZ_CP025298.1|WP_049444384.1|759957_762669_+|phosphoenolpyruvate-carboxylase
MNEYRSSIEFASPDLPLRDDVRRLGALVGDLLVEQVSAAFLDDVEDVRTRAIARRENQAPLSELAEGLAGRTPQQAETMVRAFSTYFQVVNIAERVHRIRRRRDYQRAGTAGAQPDGLQDALQHLKAQGVGLDELAQWLPRIDIEPVFTAHPTEAVRRALLEKEQLMVASLVDNLDGRRTPGEAAADAARFRMALTASWQTTDSSPVRPTVDDEREHVGFYLVQVLYRVIPVLYESLQQALRDTYGEELPLPRLLRFGTWVGGDMDGNPNVDAHTIRNTLDAQRQAVLGRYQKELLQLASLLSQSTERVGVSEALQARVAHYQQLLPQVQSRPRHADMPYRLLNDRMRARLQATLDDGEGAYAGPDELIDDLQLILDSLRANRGEHAGGFAVQRLLWRVKTFGYHLARLDVRQESSVHARALATVLGGDAAWDGLDALGRARLLAPHASGDAPLPKGDDEGNRRLDAVFAALADARARHGGDALGSYIISMAHDRSDVLAVLALARRGGLVEEGGSVPLDIAPLFETVDDLKRGTATLRDLLADPVYRAHLHARDDVQMVMLGYSDSSKDGGIAASRWGLQRAQVELLEVAAEAGIRLTFFHGRGGSISRGGGKTTHAVDASPRGSIDGRLRVTEQGEVIHRKYGIRALALRSLEQATGAVLRASLRPRAAEPREDEWRPVMDAVASASSEVYRAFVGQAGFMDYFRTATPIDVIERMTLGSRPSRRLGQDAALGNLRAIPWVFAWSQARAVIPGWYGVGSGLQAAVDAGHEQTLRDMARDWPFFRTFLDDIAMVLSKGDITIAKQFSLLSGDLHERFFPQVQRELELTRHWLLALMDQKTLLDHDARLALSIRLRNPYVDPISVLQVDLLQRWRASGREDDELLRALVACVNGVSQGVQNTG
>NZ_CP025298.1|WP_014036006.1|762736_763243_-|acyl-CoA-thioesterase
MSTELKTHQLSMTVLMSPEMANFSGKVHGGAILRLLDQVAYACASRYAGSYVVTLSVDQVMFRQPIAVGELVTFLASVNHTGTSSMEIGIKVVAEDILKRSVRHANSCFFTMVAVDEEGRPTPVPPLQPVTSDEKRRQAAALIRRQLRQEMEQRHLELLASNPPSPEE
>NZ_CP025298.1|WP_049444386.1|763382_764594_-|methionine-adenosyltransferase
MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVITDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVDRKKPEEMGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSPLPWLRPDAKSQVTLRYENGVVSAIDAVVLSTQHAPGIKQKDLIEAVREEIIKPVLPAKWLHKGTKFHINPTGKFEIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLVHPMYQQTAAYGHFGRKPKEFSYLNGEGETVNATAFSWEKTDRAAALRADAKLK
>NZ_CP025298.1|WP_049444388.1|764931_766647_+|GNAT-family-N-acetyltransferase
MQELEQRLQQRFPDWFHGRRGQLARPLLRSVGRWSRLDQIEAFLQRSSGLRGFGFVAAGLEFIDGQYQVDPAALAKIPATGRLLIVANHPSGALDALALLDAVGRIRRDVRIVANDLLGAIAPLQDLLLPVRILGGKAQRGSLHAVEEALAAEQCVIVFPAGEVSRLSLRGIRDGRWQRGFVRFARAAGAPVLPVRVEARNSALFYGASTLFKPAGTALLAREMFTRRGRPLRLSIGEPMQLGKGGDPGAQLLAVRRALYALGRNGAAGDAAAVAGPEPLASPVPPSQVAAGIAAATQLGQTADGKQILLATCTADSPLLLELGRLRELTFRQVGEGTGRSRDLDDYDPQYEHIVIWDAAAQRIAGAYRIMRGAQALARHGLSGLYSASLFRYSDDAITHIAEGLELGRSFVVPDYWGSRSLDYLWQGIGAYLQCRPGIRYLFGAVSISAALPRDAREQLVAYYQRYFSGTAGLAESNRPFQYFAAPPSFGELDAGAAFDVLKANLAALGTGVPTLYRQYTDLCEPGGARFLAFGVDPDFSDSIDGLIEVDLCAIRPNKRKRYLRDAGTPA
>NZ_CP025298.1|WP_014036008.1|766643_767444_+|UDP-2,3-diacylglucosamine-diphosphatase
MSTLANLSPHRRAVFVSDVHLGSRHCHATELARFLSQLRCERLYLVGDIIDLWWMAHRRANWRQSHSEVIQALHALRRAGTEIIYIPGNHDASLRHVCGLMLPAMQVRRRAIHVTADGRRLLVAHGDDYDGVTHFGGLQEKFGDWLYYRILTGNQALNAVRRRLGMRYWSLSEFLKKRSGAAERYIERFVQAGLDDVRRRGLDGIVCGHIHRAALVERDGLVYANDGDWVESLTALAEDHDGALRLLDHNGQTLVELPGARIKQAA
>NZ_CP025298.1|WP_049444392.1|767600_768659_+|metal-dependent-hydrolase
MDSLTQIVLGGAVAAAIAPPGHRRAALLAGAALGTLPDLDALWLGFTAADPVANMIEHRSFSHSLLVLPWVAALIWWLFKRFGNGRVAQSPVRWFWAIQLALVTHPVLDAFTVYGTQLWWPLRPHPTMGSSVFIIDPGYTVWLLLGCVLAWFGRARPWAGKVLGMALLLSSGYLGWGLIAKAQVDRAAQQGLAAMGLGDAPRFSVPMPFNTLLWRVVAMTPSGYVVGDRSLVADHGPMRFEGHASNVQALREATAIPAVQQLQWFNRGFMRAQVVDGRLVLSDLRMGLEPDYTFNFVVAEQADGQWRAITPEQVRVDYSSPAARADAGRRLAAMWQRIWQEPAASATGAAHP

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Crispr_ID: NZ_CP025298_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025298_3

2587738-2587855

Orphan

Consensus_repeat	Method
GCGTGCCAACCAAGGTTGGCACCTACCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025298_3

>merge|NZ_CP025298|3|2587738-2587855|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCAAGGGCCCACGGCCGGCGGATTCCGGTAGATGCCAACCTTGGTTGGCACCGTTGATGTTCCGCGTGCCAACCAAGGTTGGCACCTACCAAG

>NZ_CP025298|3|3|2587738-2587855|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCAAG	GGCCCACGGCCGGCGGATTCCGGTAGATGCCAACCTTGGTTGGCACCGTTGATGTTCC
GCGTGCCAACCAAGGTTGGCACCTACCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025298.1\|WP_101765566.1\|2584371_2585619_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP025298.1\|WP_101765563.1\|2578196_2579138_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP025298.1\|WP_014037377.1\|2593788_2594205_-\|host-attachment-protein	unknown	unknown	gnl\|CDD\|376275
NZ_CP025298.1\|WP_049447344.1\|2598117_2599701_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226434
NZ_CP025298.1\|WP_049447314.1\|2587894_2590246_-\|sugar-hydrolase	unknown	unknown	gnl\|CDD\|377950
NZ_CP025298.1\|WP_101765561.1\|2576114_2576813_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP025298.1\|WP_049447317.1\|2593332_2593575_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187618
NZ_CP025298.1\|WP_049444952.1\|2575184_2576069_+\|copper-homeostasis-membrane-protein-CopD	unknown	unknown	gnl\|CDD\|224195
NZ_CP025298.1\|WP_049447324.1\|2596348_2596966_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_101765567.1\|2590400_2590583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_049447321.1\|2594776_2596264_+\|glycine-betaine/L-proline-transporter-ProP	unknown	unknown	gnl\|CDD\|182611
NZ_CP025298.1\|WP_049447313.1\|2586348_2587731_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP025298.1\|WP_014037371.1\|2585681_2586356_+\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NZ_CP025298.1\|WP_101765562.1\|2576809_2578177_+\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP025298.1\|WP_101765564.1\|2579243_2579987_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187620
NZ_CP025298.1\|WP_101765568.1\|2590595_2592917_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|237940
NZ_CP025298.1\|WP_049447305.1\|2580128_2583206_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_CP025298.1\|WP_101765565.1\|2583202_2584375_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP025298.1\|WP_049447326.1\|2597075_2597702_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226648
NZ_CP025298.1\|WP_049447329.1\|2597705_2598047_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852

Protein	Function_ID	Function_description	E-value
NZ_CP025298.1\|WP_101765566.1\|2584371_2585619_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	9.80621e-26
NZ_CP025298.1\|WP_101765563.1\|2578196_2579138_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.86443e-97
NZ_CP025298.1\|WP_014037377.1\|2593788_2594205_-\|host-attachment-protein	gnl\|CDD\|376275	pfam18856, baeRF_family12, Bacterial archaeo-eukaryotic release factor family 12. Bacterial family of the archaeo-eukaryotic release factor superfamily. Likely to play roles in biological conflicts or regulation under stress conditions at the ribosome.	3.42166e-30
NZ_CP025298.1\|WP_049447344.1\|2598117_2599701_-\|PAS-domain-containing-protein	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	1.90585e-29
NZ_CP025298.1\|WP_049447314.1\|2587894_2590246_-\|sugar-hydrolase	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
NZ_CP025298.1\|WP_101765561.1\|2576114_2576813_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	2.62337e-114
NZ_CP025298.1\|WP_049447317.1\|2593332_2593575_+\|hypothetical-protein	gnl\|CDD\|187618	cd05360, SDR_c3, classical (c) SDR, subgroup 3. These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	0.00292389
NZ_CP025298.1\|WP_049444952.1\|2575184_2576069_+\|copper-homeostasis-membrane-protein-CopD	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	1.25965e-20
NZ_CP025298.1\|WP_049447321.1\|2594776_2596264_+\|glycine-betaine/L-proline-transporter-ProP	gnl\|CDD\|182611	PRK10642, PRK10642, proline/glycine betaine transporter ProP.	0
NZ_CP025298.1\|WP_049447313.1\|2586348_2587731_+\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.26744e-52
NZ_CP025298.1\|WP_014037371.1\|2585681_2586356_+\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	1.04887e-68
NZ_CP025298.1\|WP_101765562.1\|2576809_2578177_+\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	3.12527e-109
NZ_CP025298.1\|WP_101765564.1\|2579243_2579987_+\|SDR-family-oxidoreductase	gnl\|CDD\|187620	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs. 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.48158e-113
NZ_CP025298.1\|WP_101765568.1\|2590595_2592917_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	5.51886e-67
NZ_CP025298.1\|WP_049447305.1\|2580128_2583206_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_CP025298.1\|WP_101765565.1\|2583202_2584375_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.37645e-37
NZ_CP025298.1\|WP_049447326.1\|2597075_2597702_-\|hypothetical-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	3.99207e-27
NZ_CP025298.1\|WP_049447329.1\|2597705_2598047_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.000750049

>NZ_CP025298.1|WP_049447313.1|2586348_2587731_+|sensor-histidine-kinase
MTERVHSLRGLLLRRLWLPLLVLLLCSAVGSFALARFYAGQVYDRWLLDSAMSLSELVKVQDGRASIEITPAVSRMFTWDTADEVHGEVVDADGGRLYGDLPEALPRPAAGPAGDDDAVYYDARLRGQAVRMVEVVVSAGPGHDIRLRVAETLRKRHRLERKLLLTSIPFQAAILALAAWLAWSGTGAAARHANQVARRLASPRPDPLAPLEPAQEAPRELWPAVEAYNALLQRLDAMQAAQRRFVSNAAHQLRTPLAAMQVELESSLRQHDPQAQQLALSGTLAGLARLQHLVNQLLMLSRSEDPHGSALPLQPLDLAALARGVVERYADRALAAGVDLGYEGPDDGVQVLGDPQLLREALGNLLDNALRYGAVPGVITLGLQQDAEGVQVWVDDDGTGIAEPERERVTERFYRASSEGDGCGLGLAIVAEIAQRHGAALVIDGAPIGGARVGLRFRSH
>NZ_CP025298.1|WP_014037371.1|2585681_2586356_+|response-regulator
MRILLIEDDAALADGLIRALQGAGHLCDHLSRGLHAPAALASAPYDVMVLDLSLPDVDGLDLLSRLRNDGVTLPVLILTARDGVEDRILGLDRGGDDYLAKPFALGELEARLRALSRRRSDAPAQKRLGRLCFDSIRNEAQVDGQRIELTARELSLVEALMQHPGRTVTKQRLFDALYSWDHEANLSVIEVHVSRLRRKLEQARAGVGIRMLRGLGYRLEAGGD
>NZ_CP025298.1|WP_101765566.1|2584371_2585619_-|TolC-family-protein
MNFSPRLAALLAALSCAPAASALSLADAQRAMEAHNPDLRAAALELRGVQGDAQTAALRPATELSIGTSKISPKHGIGPGRWQDKRVDSTLGLGWTWERGGKRALRIRQADALLEVAGLDMLDTRRRQQVALHEAYFGLKGAQERAQIADANRRSSVEQMAAADKQVATGAMAPVDRARLAVDDLAVADAAREAALDLRDARHALGLLLGSDDSRDLSADDPWPDASGVADVRAFDPQQRADLRAARSRLAAADAGVALARSERHRDVQLGVEAEREPTDISGVTWGVSLTIPLGGPSRARGAIQRAEADRDSAALELQVLQREARAELDQLQASAQSAAQRRSDYEGLQSDAARKAVEGIELAYRRGAASLTDLLDARRSWRDFEAALIEARADHAIALARWEAATSVAEGESR
>NZ_CP025298.1|WP_101765565.1|2583202_2584375_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKSTVTYRPQARHAVLPALLALALLGGCGREPASYAEDAPQVSAGQIQFPADSRQLDVLRSEAVTAGASASLQLPGRVVWDETRSSALRTPLAGQVARIEAQPGQKVKAGQVIAWITSPEFGQAQAEGVRGRAELQQARKELDRTRELHAAGVASGRELDEAEASFAGSQADHARATAFARAYGNGQHVDQRLPLRAPIDGVLVERRMSPGMSVSPDSEQPLAVIGDPDRLWLLLDIPESLAGRLKAGMQVSVPGADGQPLQATLQHVDDFVDSERRVVQARAELDNRARGFKAGQYVRAQVALPAEGGVSLPDAAVLLIDGKQVVFVEEGKGRFVRHAVHAEELGDGRLSVREGLPVGSRVVVEGGLLLQQLVDSAPAAASTGAGHAAP
>NZ_CP025298.1|WP_049447305.1|2580128_2583206_-|efflux-RND-transporter-permease-subunit
MIDRLIAYCLRQPLMVMLALLLFIGAGIAAFRVLPVEAFPDVSDTQVTVVSLHPGRAAEEVEREVTMPLEVALSGIPHSVRVFSHTQFGLSMIILTFDDKADDYFARQQVLERLQGVELPEGVSPELEAMSSAVGEIYRYVLKGPHMTPTQLRTVQEWTMERSLRTVPGVADVISFGGFARTFQVKPDLDKLRDRGISLGEFAEALEKGSSNAGGGYVERGQQQFLIRGVGLMRSPADIGNVVVAQRGGTPILVRDLASIADTGLPRQGLVGQDDNDDAVFGMVLMRKGENPSDVLDALHARIAEIQANQLPAGVSIEPFYDRSWLVSTTLKTVFRNLLEGAVLVFLVLWLFLYNARAALIVAAMMPLALLSTFLGLHLWGVPANLLSLGAMDFGIIIDGAVIVTEHIVSRLSKLPPTADRKTRFSTILSAASEVGRPTFFSMLIIIAAHIPIFTLQRQEGRMFAPMAYSVTSALIGALILALTVVPLFCYWWLRRDRMRDGNPLMDRLTGWYRPILERALARPRAVVLTAVALLVGTLALGTRLGSEFLPELDEGSIWLTATLDPSTSLAEAQQQSRRIRELVGTFPQVSTVVAKLGRPEDGSDAKGANQIEALVALKPEKEWPKGVDKRQLVSDLQRTLEQRIPGPEFSISQPVRDNILESISQIKGQVVIKVSGSDLDVLNQHAQAILGQVRGVEGVESAFIDRDGSLPQLQIEIDRDRAARYGLNVRDIDEVIETALGGRQVGELWEGDRKFPITLRLDDADRDLQRLRTVPVGIGDGHTVTLSDVADFRMASGAINISRENAQRVKAVSIFIAGRDMGSVVADMRKRVDASVQLPEGYRLEWSGEFENQQRAMKRLGWVIPLSVLIIFVLLFDAFKEISSAALILANVPLAMIGGILALWLTGIPLSVSAAIGFIALFGQAVLNGVVMLSRFAQLREQGMDLLQSVVQGSLQRLRTVLMTALLAMFGLLPMATSHAIGAETQKPLAVVVIGGLLSAMLLTLLVLPTLYYWVHRRREARAG
>NZ_CP025298.1|WP_101765564.1|2579243_2579987_+|SDR-family-oxidoreductase
MTLSSTRSVALVTGGSRGIGAAISRRLAADGHAVVINYAGRRDDAEALAAELNAAGAQALALQADVADPQAVRQLFDAIEARFGGIDVVVNSAGVLQLAPLADSDDALFERVIGINLKGAFNVLRESARRVRDGGRLISLSTSVVGIRLENYSVYAASKAAVETMGAILSKELRGRNITVNAVAPGPTATDLFLEGKSPELIERLAKMNPLERLGTPEDIAGAVAFLTGADGRWINGQVLRANGGMV
>NZ_CP025298.1|WP_101765563.1|2578196_2579138_-|LysR-family-transcriptional-regulator
MDRFTAMRAFVRIVERRSFTRACEDLGLPRATVTDAIKALEHRLGVRLLHRTTRLVVPTLEGEAFYGRCLRLIADMDDAEAAFRDVPPRGPLRIEVHGTLGRHLLFPHLPDFLQRYPEIELEVSEGDRYVDLLREGVDVALRVGTLADSDLAARRLTLLREVTVASPDYVQAYGMPGTIESLEQGHRMVGYRSSATGQLIPLEFQQGAQVRHVPLPVSVRVSGADAFLGAALAGLGIIQAPRYRMDPYIGSGQLVELLPDSPPTPSPLSLVYPRNRTPSPRLRVFIDWVAGVFDPAGVAGQRPALPNRGVRAG
>NZ_CP025298.1|WP_101765562.1|2576809_2578177_+|heavy-metal-sensor-histidine-kinase
MNLRRSIAVRLTLLFATVATLVLAVLGVAIYVSARHDLVAQDFIELENKVALIRDLAGNGPVSARGQRLAEALGHHPDIAFHIADGSGAVLFSTAPALLREHARSQPVDAAPRRHDWILADGRCMHALHLRLTLADGSQLVTLLAIDDDRHADFLQRFRHLLAIAIIGAAVASSLLGGYVVRRTLRPLRTLADEARQITAGRLQRRLSARSAPAELEQLAQTLNGMLARLQQDFARLTGFSGDLAHELRTPITNMLTQVQVVLAHPRSNEAYRETLVSCAEELQQLAQTVGDLLYLAQAEAPGALPSREPVALDVVVDSLLEFYDLLAEDRQLTLHREGTARVEGNRLMLHRAIANLLSNALKHAALGSDVRVRLVEDGNLCRISVHNIGTPIAEEALPRLFDRFYRGERGRHEGAGLGLAITRAIAQAHGGTVSVTSDETGTVFELVLPSASAR
>NZ_CP025298.1|WP_101765561.1|2576114_2576813_+|heavy-metal-response-regulator-transcription-factor
MKLLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGWNVLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLGKPFAFAELLARVRTLLRRGQALPQAERIVIADLVVDTLRRRVERAGQRITLSPKEYTLLELLARRRGEVLPRSLIASQVWDMNFDSDTNVIDVAIRRLRAKIDDGFDARLIVTVRGMGYVLEAPDDGAAHSG
>NZ_CP025298.1|WP_049444952.1|2575184_2576069_+|copper-homeostasis-membrane-protein-CopD
MAELSPYALRLALYLVLMLLFGRILFARPALPRPILLALVLIALLVGVTDAVTRLSSVLGLSPADIDLDMARWFLTGTPVGEAGLLRLLALLAMLPLLAFAAPLRGLRRVALLVLSGTALASLSWNGHAAAGDGLAGTLRLVAGVVHLLAAGAWVGAIAAILQLALRPQGLRLRERTHELWQAAHRFALPGTIIVATLAMTGTYTYVDLGGSLQTLTGTAHGRWLLIKLALVGGMLGLAALHRWRLVPALATSIRGGWQPRPLRSLRHSLACESVLALLVLACVAVLGTLDPLT
>NZ_CP025298.1|WP_049447314.1|2587894_2590246_-|sugar-hydrolase
MPMPTLDRRLLIAFAATAMLASGAALAATPNTAAERAYAAVDPFIGTGGEGHTYPGATVPFGMVQLSPDTRIQPREKAYGWAAGYRYDDSSIVGFSHTHFSGTGHSDLGDILLMPFTGNPGLERGDPEKPRSGYASRFRHADEKAEPGYYAVTLDDYKVRAELTTSARVGVHRYAFPKGTDAKVLLDMRTSMYDYPGKVLWSRVRVRADGTVTGFRETRGWAPGRQLYFAMRFSRPLSGHELHNTEQDIVYKGFPPPGEKDPAQRAQIEGRQLVGTFAFGKLDAPLVVKVAISPVSEAGAIANLDAEVADFDFDRVRAQAKQEWTQALSVLDIDAPEHARRSAYTALYHTMLGPTLFMDADGQYRGSDNAVHKADGFTNYSTFSLWDTYRALHPLLTLVQPEKRNSDFVNSMLAHHEHSPYGMLPVWSFHGLEDWCMIGYHAVPVIADAYVKGIRGFDANKALKAMVETANYGPYDGIAQYRELGYVPIDEEGEAASKTLEYAFDDWTIARMAQAMGKTDIAATFDKRAGNWRNAFDKDTGFMRARKRDGSFRTPFDPSASGYGTDYTEGNAWQYSWYVPQDVAGLAAAHGGSDKLLARLDEVFNAKVDPSIFEHMEDITGLIGWYAHGNEPSHHVAYLYSYAGQPWRTQARLKQIMDTQYADRPDGLAGNDDVGQMSAWYVFTALGFYPVAPGSGEYILGRPFLPKTAMRLPNGKTFTIVADGLDDRHTYVGSVSLNGKPLQRTFLRHDEILAGGELRFSMQAEPNKAWPGQGAQAPYSMSR
>NZ_CP025298.1|WP_101765567.1|2590400_2590583_-|hypothetical-protein
MDIELQERDRIHFVGVNETPLSCEEKVIAMPFPAQVARSAMAVTSQPGLSRDAFSRRFWA
>NZ_CP025298.1|WP_101765568.1|2590595_2592917_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKIAVRRSLPLAIAAGVALASTAQAGTLGPGQSAIVNAGDPIESWSAQGATLTFSTGSAATSVGISDGSTLTMTGATATATNPFAAVQIASSSATITGTRIQNNRAAGLAVTNGSSGGAAGNASVTDSSISGQGIGSYVQGGMLTLSNTTIDGTGIGAGLLPPEISSGLAVFSNSNVSITNGSAIAGDENGIFVKDIGGTPTSTITDNVLTVDKSRVIGRNGSGIVVSGAGIIAPTTVNVLNGSTVSGGNGVIAEAVYGGTLNLNVDASQLQGTLRADATSQLHANFSNGAVLNGAMTNVTSATLDSATWNMTGNSTVGALNLGNGTVSLGDGSAFHTLNVAGNFTGNGGTLAFNTVLAGDDAATDKLIIGGDTSGTANVRVNNVGGAGAQTNQGIQLIQVGGASNGQFNLAGRAVGGQYEYFLHKGTGADGNWYLRSQLPTVPDPCVVDPSLPQCQPVDPVDPGEPVLRPEPGAYLANLQAAQSMFRLGYHDRNAGQNSGRAWARVDGSRNGFDAVSKQLDIRGKSQALTVGADLWRHESGSSAGVMLSTGNATSTSTNELTGYYARGKVKGEALGLYGTWRGGNGADPYAGFYVDGSLQRAQFRNRVEGIGLAAERYDSRAWQGAVETGYAFRVGGASNGGIYLEPQLQVGYSRWDSNRQTEANGTVVGAENANGLFGRAGLRLSGVTRWGNGSTEVQPYLAANWLHTRAESRIRMDDEIADARVPRSRGEFSGGASVKFANGIGAWGGLSLQRASGYHQTTAQVGVSYSW
>NZ_CP025298.1|WP_049447317.1|2593332_2593575_+|hypothetical-protein
MTQRPLSPAMESLFQRIEHALNSAEGMAILIGEQYGPEPKPPAPMGYNPRQIANAMVMLSQHGRCLLRALREEAEKVTYH
>NZ_CP025298.1|WP_014037377.1|2593788_2594205_-|host-attachment-protein
MTRRIPEGTLIIVADGGSARVFTNVGSEHQLALKQEGELRLQDISEQGVSGQGPAGAVPKDMSISQLNEATFAKQVAEQLNEDALNNRYAHLVLVADPTTLGRIRPLLHKEVQARLLGDIAKDLTNAPLADIQKALAA
>NZ_CP025298.1|WP_049447321.1|2594776_2596264_+|glycine-betaine/L-proline-transporter-ProP
MQDTPDSHAHFGWFKRRRHLKVDEITVVDKPMLKRAVGAAALGNAMEWFDFGVYGYLAVTIGQVFFPSSNPTAQVIAAFATFTVAFLVRPLGGLVFGPLGDRYGRQKVLAFTMILMALGTFSIGLIPAYERIGIWAPVLLLLARVVQGFSTGGEYGGAATFIAEYSTDRNRGLMGSWLEFGTLGGYIAGAGTVTALHMLLSSEQMLDWGWRIPFLVAGPLGLLGLYMRMKLEETPAFRAFAEEAEKREHDRPGLGALFQVHGRQLLVCMGLVLVFNVTDYMLLTYMPSYLSVTMNYAESKGLLLIIIVMLVMMPLNIVGGLFSDRLGRRPMIIGACIALLVLAVPCLLLIGSGNDWLIFLGLMLLGLALVCFTSSMPSTLPALFYTPVRYSALSIAFNVSVSLFGGTTPLVTAWLVERTGDPLVPAYYLMGAAVIGLVTMLFVKETAGLPLRGSPPAVGSDKEAAALLKSDVPVTVDPTLPPLPDVAEPEQVKPA
>NZ_CP025298.1|WP_049447324.1|2596348_2596966_-|hypothetical-protein
MHGPAMFRFTSICLPLAALALSSLTAVAAPAASKRVVAPPSLVQAYRAAEASLRRIPGDDIESDFRPVWTGVADLDGDGRSEVVYFYTSTYTGGSFAQSNVVAVMTALTANDPRGQENPKSLSRVDAEDFAAIRESGYGDDAGIQIPGAVQSIRIDGNRIIVAFTVTAGATVCEIPHDFRHVCPPDGNYTWTLRWTPGTLARIRK
>NZ_CP025298.1|WP_049447326.1|2597075_2597702_-|hypothetical-protein
MGRILALAGVNGAGKSSLLGTWLDAEGLSWFNPDSFTRRLVDAGWPLPEANAEAWQEGTRRLRQAMADGTDFAFETTLGGNTIPRLLREACERHQVAIWFCGLADVELHVARVAARVAAGGHDIPVEKIHARFDSARANLLELLPHLAELHVYDNSAPADAQGGVVPLPVLAMAAGELQYPIAVADLLHTPGWAKPIVMRAMELNTPQ
>NZ_CP025298.1|WP_049447329.1|2597705_2598047_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MTLPLDLPGLEKAPASSVKTRGWPSLMRTVREKQALVITNHNHPEAVIVDIRTYQELLAKAAGSDAGERNEELQRLRSEFDQTLAGLQRGEGLGKVLGQPIRRGRKVTLGRPL
>NZ_CP025298.1|WP_049447344.1|2598117_2599701_-|PAS-domain-containing-protein
MSRRIEGLHAAERPGRPLSRQAHTRHDGMAARIARHDWSSTSLGAIERWQPHLRATVDLMLAHGFPMIVLWGEQLVQLYNDGYAEILADKHPGGLGQPTRECWPEVWHINGPIYRRVWQGETITYEDKLYPLARRGRLEDVWFTITYSPIRGEEGCINGVLVTMFETTSAHVAQAAREREEQKRRESDRRLALAFKVLPVGVCIVDADGKLQLSNDQMRAYLPSGKVPSTDAENQHRWRGWHADGSTIGPEDFAIARALRGETVVPGLEFQFTHDDGRARWTRVAAAPLRDAEGEVSGVFAIAVDIDDLKRATERQSVLLAELQHRVRNIMSTIHAIAWRTRVSVGSVDEYAERLCARLMSLARTQSLLTRGANVGVCLRGMLDEEIAAQTPAATAYHLQGEDVLLPPKAAEVLSLAIHELATNALRHGALTHEDGRIDVCWHLQVQDGQPWLGLHWCERHAEVEGWEMPRQRGLGRVLIEQRVPYELAGSGELRFAPQGLDAWIRFPLRERDSLLQTDAPDTGPLG

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Crispr_ID: NZ_CP025298_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025298_4

2669883-2669989

Orphan

Consensus_repeat	Method
GTAGAGCCACGCCATGCGTGGCTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025298_4

>merge|NZ_CP025298|4|2669883-2669989|CRISPRCasFinder
GTAGAGCCACGCCATGCGTGGCTGCACCGGCCAGATCCACCGCAGAAGCATCCACGCATGGCATCGCCCGGGCACCCCGCAGTAGAGCCACGCCATGCGTGGCTGCA

>NZ_CP025298|4|4|2669883-2669989|CRISPRCasFinder
GTAGAGCCACGCCATGCGTGGCTGCA	CCGGCCAGATCCACCGCAGAAGCATCCACGCATGGCATCGCCCGGGCACCCCGCA
GTAGAGCCACGCCATGCGTGGCTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025298.1\|WP_101765593.1\|2669995_2670496_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|238385
NZ_CP025298.1\|WP_158298001.1\|2676451_2676829_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_049444747.1\|2656934_2658149_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP025298.1\|WP_101765597.1\|2674589_2674919_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_101765592.1\|2669230_2669773_-\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|133000
NZ_CP025298.1\|WP_049444676.1\|2661932_2663477_-\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP025298.1\|WP_101765589.1\|2663476_2667232_-\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP025298.1\|WP_049444677.1\|2661252_2661933_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
NZ_CP025298.1\|WP_014037437.1\|2658290_2659622_-\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NZ_CP025298.1\|WP_049444679.1\|2659645_2660545_-\|rotamase	unknown	unknown	gnl\|CDD\|131979
NZ_CP025298.1\|WP_101765591.1\|2668868_2669234_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_101765590.1\|2667304_2668723_-\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP025298.1\|WP_101765596.1\|2674191_2674596_+\|ribonucleotide-reductase-subunit-alpha	unknown	unknown	unknown
NZ_CP025298.1\|WP_010485313.1\|2660548_2661256_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP025298.1\|WP_101765599.1\|2675907_2676243_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_101765595.1\|2672012_2673008_-\|bifunctional-molybdenum-cofactor-biosynthesis-protein-MoaC/MoaB	unknown	unknown	gnl\|CDD\|235138
NZ_CP025298.1\|WP_101765598.1\|2675487_2675862_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_101765594.1\|2670759_2672013_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP025298.1\|WP_049444670.1\|2673016_2673997_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP025298.1\|WP_049444672.1\|2670499_2670760_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888

Protein	Function_ID	Function_description	E-value
NZ_CP025298.1\|WP_101765593.1\|2669995_2670496_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	6.94963e-41
NZ_CP025298.1\|WP_049444747.1\|2656934_2658149_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	1.18554e-31
NZ_CP025298.1\|WP_101765592.1\|2669230_2669773_-\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|133000	cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.	3.63071e-41
NZ_CP025298.1\|WP_049444676.1\|2661932_2663477_-\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP025298.1\|WP_101765589.1\|2663476_2667232_-\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP025298.1\|WP_049444677.1\|2661252_2661933_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.45264e-56
NZ_CP025298.1\|WP_014037437.1\|2658290_2659622_-\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	1.21336e-125
NZ_CP025298.1\|WP_049444679.1\|2659645_2660545_-\|rotamase	gnl\|CDD\|131979	TIGR02933, Putative_peptidyl-prolyl_cis-trans_isomerase_NifM, nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase. [Central intermediary metabolism, Nitrogen fixation].	8.90605e-25
NZ_CP025298.1\|WP_101765590.1\|2667304_2668723_-\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	6.53985e-170
NZ_CP025298.1\|WP_010485313.1\|2660548_2661256_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	1.10477e-97
NZ_CP025298.1\|WP_101765595.1\|2672012_2673008_-\|bifunctional-molybdenum-cofactor-biosynthesis-protein-MoaC/MoaB	gnl\|CDD\|235138	PRK03604, moaC, bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional.	4.40801e-151
NZ_CP025298.1\|WP_101765594.1\|2670759_2672013_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	2.15844e-132
NZ_CP025298.1\|WP_049444670.1\|2673016_2673997_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	6.68508e-159
NZ_CP025298.1\|WP_049444672.1\|2670499_2670760_-\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	3.63529e-09

>NZ_CP025298.1|WP_101765592.1|2669230_2669773_-|molybdenum-cofactor-guanylyltransferase
MSIHGIVLAGGLSSRMGRDKALLPWEGRTLLEHMRGLLLQAGAERVWVSGDYPAFGGIPDQVARCGPLGGLHSVMQQMPDGPAWVVAVDTPLLAPRLLQRLAAEGRGACTIFDGHPFPMLLNVDNATRSVLAAMLDDADGRRSVQAFQRRLQMHALLLESVDEACLVNCNTPEQWEDVAS
>NZ_CP025298.1|WP_101765591.1|2668868_2669234_-|hypothetical-protein
MKVQLRDQSVRLRLDEAELARLLAGESVENMTRFGGIEGWGMAVSLHGGEQPVLLDGGTFCRLVLPRLAVEALAARLPCREGLPFDIALEDGSQLQLQFDVDVRDSVRQRGVTRRTTASPV
>NZ_CP025298.1|WP_101765590.1|2667304_2668723_-|NarK-family-nitrate/nitrite-MFS-transporter
MTVGSDPVVRSTARPGRVISDWTPEDPGYWERTGKRVATRNLVISIPSLLLAFSVWVLFSAVSISLPKIGFNFSTDQLFWLVALPSLSGATLRIFYSFVIPIFGGRRWTALSTASLLAPTLWLGFAVQDPATPYGVFVAIAILCGFGGANFSSSMSNISFFYPKQKQGLALGLNAGLGNVGVSVAQAVIPLVITVGVFGALGGAPQPTVEGGAPLFLQNAGFIWVPAIALCAIAAWFGMNDLTSARSSFSEQAVIFRRKHNWLMCWLYIGTFGSYIGFSAGFPMLVKSQFPEVNPLAYAFIGPLLGALMRSVGGSMADRWGGARLTFWVFALMIAAVFGVLHFLPSHGQGGNFHGFLLSFMALFVLSGIGNGTTFRMIPVIFRTLHERWSANDNAEGKATAAHQASIESAAVVGFSGAIGAYGGFFIPKSYGSSITLTGSPDMALYGFVVFYVTCLAVTWWWYYRRGAETPC
>NZ_CP025298.1|WP_101765589.1|2663476_2667232_-|nitrate-reductase-subunit-alpha
MSYFLDRLQFFKRDPQTFADGHGFAKSEGRDWENSYRARWQYDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLIRGTLLRLWREARKSKAPVDAWASIVEDKEKARSYKTRRGMGGFVRLQWEEANEIIAASNLYTVKQYGPDRVVGFSPIPAMSMVSYAAGARYLSLLGGACLSFYDWYCDLPPASPQIWGEQTDVPESADWYNSRYIIAWGSNVPQTRTPDAHFFTEARYNGTKTVAICPDYSELAKLTDHWLHPKQGTDAALAFAFGHVILREFHVDSPSQYFQDYCRQYSDMPMLVRLERRDDGRLVPGRFLRASELGGLGEANNPDWKTLAYDETSGQIVVPNGSIGFRWGEKGKWNIEEKESKGADTRLRLSLADGHEGIEAVSFPYFGGIETDGWTAAPADDVLERNIPVRRLALAEGGETLVATVYDLLLAQYGVDRGFGGGNVASSFDDMVPGTPAWQERITGVSRAEVIEIAREFARTADKTHGRSMIIVGAGMNHWFHNDMNYRGLINMLIMCGCVGQTGGGWAHYVGQEKLRPQTGWQPLAFGLDWSRPPRHMNGTSFFYFNTGQWRYEKLQVDELLSPLADASKYSGSLADLNLRAVRMGWLPCAPQLDRNPLQLVREADAAGVAPADYALGKFKDGSLDFAFADPDAQQNHPRMMFIWRSNLLGSSGKGHEYMLRHLLGTRHGLQGKDLGEMGAIKPEEVTWRDEAPEGKLDLLVTLDFRMCTTALYSDIVLPTATWYEKDDLNTSDMHPFIHPLSKAVDPAWESRSDWEIFKEVARTVSEMAPGVLGVEKDLVLVPTLHDTPNELGMPFGVADWKKGECEAIPGQTMPSMTVVERDYPNLYRKFTSLGPLLDKLGNGGKGMSWDTKHEVEFLGKLNHTVHDAGVSQGRPAISTAIDAAEVILHLAPETNGHVAVKAWESLGTFTGREHTHLAVGKEHEAIRFRDIQAQPRKIISSPIWSGLEDDNVSYNAGYTNVHELIPWRTVTGRQQFYQDHEWMIDFGEAFMGYRPPVNTRTVEPLLNQRPNGNKEIVLNWITPHQKWGIHSTYSDNLIMQTLSRGGPIVWISEDDARSAGIVDNDWIELFNVNGAIAARAVVSQRVMPGMAMMYHAQERIINVPGSEISGTRGGIHNSVTRIVLKPTHMIGGYAQLAYGFNYYGTCGTNRDEFVIVRKMDKIDWLDDEQPAGASASASKEVV
>NZ_CP025298.1|WP_049444676.1|2661932_2663477_-|nitrate-reductase-subunit-beta
MKVRAQIAMVLNLDKCIGCHTCSITCKNVWTSREGVEYAWFNNVETKPGIGYPKEWENQDKWNGGWVRTRAGKLVPRAGGRWRMLAKIFANPDLPQIDDYYEPFDFDYQNLHTAKDSQHQPTARPRSLISGERMQKIEWGPNWEEILGSEFSKRSRDYNFDQVQKEIYGAFEKTFMMYLPRLCEHCLNPACVSACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWKSGKSEKCIFCYPRIEMGEPTVCSETCVGRIRYLGVMLYDADRIAEAASVAAEKDLYQAHLDIFLDPNDPAVIAAARKEGIPDSWLDAAKQSPVYKLAIDWKLALPLHPEYRTLPMVWYVPPLSPIQSAAERGRVGMSGELPDVVSLRIPMRYLANLLTAGDEAPVVRALERLMAMRAWRRAKNVDGVEDTAVLEQTGLSIAQVEEMYRYLAIANYEDRFVIPTGHREYANDAFGERGGCGFTFGNGCNGDSPADLFGQRKSTTFVVDKGPNHRRKEVV
>NZ_CP025298.1|WP_049444677.1|2661252_2661933_-|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MSVLKLVGVLLDYPREELWQHGEELLAACDDPALSAARRQQLRSFVQQLLDTDALDAQAAWLASFDRGRSMSLLLFEHIHGESRDRGQAMVDLVETYRRNGFELDARELPDYLPLLLEFLAHRPGSEAREWLHHIGHIAGMLAARAAERELPHRVLFEILVEAGDGKADLQALRQRASEEVRDDTAEAMDRLWEEEAVRFGAEAPAEDCKPPVRSPARPSHREVQP
>NZ_CP025298.1|WP_010485313.1|2660548_2661256_-|respiratory-nitrate-reductase-subunit-gamma
MSYSLHQFAFQYYPYIAVAVLLIGSWARYDKAMYTWRTGSSQMLSDKGMRIGSNCFHIGILAILGGHLVGLLTPHAVYEHFITSSQKQMLAMVVGGVFGALCFIGISILLVRRLFNARVRATGSFGDTLVLVLLFAQLCLGLYSIRISSGHLDGGVMVQLAEWAQHIVTFRAGAADYIEGVSWVYKMHIFLGLTLFLIAPFTRLVHVWSIPISYLWRPYQVVRRRQATLRYGPRE
>NZ_CP025298.1|WP_049444679.1|2659645_2660545_-|rotamase
MGSLPKFLPITVIDSAAPVPAEAHSHHHDAAEQGPRSLGQPAPCRLFVDETAISEADIAREMQHHRAMRPEQSRAEAARALVVRELLRLEAQRLGLQAPEGNRVSDEEVLIQQLLEDAIEDRVPTDEDCRRYFEQNPERFRSPDRVRLRHILLAAPADDVAGRFAARTEGERLVGLLKESPHLFADFALRHSRCPSSSEGGDLGWLQRGQTTPEFDRQVFRLREGLAGFPVESRWGYHVVCVDAREEGLPQPFETVLPQLRDYLELQVRQREVQAYLLQLQERYPVRGLDEIEAEADIG
>NZ_CP025298.1|WP_014037437.1|2658290_2659622_-|NarK/NasA-family-nitrate-transporter
MNQALAPASAGQQQRALWLSTFAFTVCFAVWMIFSIIGIQISQQLGLNDTQFGLLIATPVLTGSVSRVFLGIWSDQFGGRKVMVLVMLCGAVATWMLTYAQTYTQFLIAALCVGIAGGNFSVGVAYVSKWFPASKQGTALGIFGAGNIGSAVTKLLAPLVMVAAGWTMVAKVWAVALAVTAVLFFLFSKEDPSLEQRRREGVKPVPFAEQMAPLKNLQVWRFSLYYFFVFGGFVALALWLPHYLVGAYGMDVGHAGMLAACYSIPASLFRVVGGWMSDRMGARRVMYWTFGVSAICTFLLAYPDTEYVVKGIHGPIHFHLAIGVVMFTVLVFVLGFFMSLGKAAVYKHIPVYYPQHVGAVGGVVGMIGGLGGFILPIVFGALNDAVGIWSSCFMLLFVLVAAALAWMHFAIRRMERRHFPQIDRETDLPEAIDAAAAERVRGR
>NZ_CP025298.1|WP_049444747.1|2656934_2658149_-|coproporphyrinogen-III-oxidase
MSFHVDESEDTALQAALLRQPRHVLFPAADQFSTGFGESGWRAAVRASNEHLIPRGLTLGFQAGRGGRDVPPQAYLDTLLLALQLQADALAEDREVVAMVLQLGLAETLPPPQLGQLLDAVPQHLRTVARPQVEVRLDAGSALSPAQLRAVGCTRLNVIDRADAPGPTLLAQARQVGFTARYYQLRVPASEDIGFIERLHEVLAEAPERILLPAPCALPQHPSAANWLQAWRLLRAAGYEPIGGDHYQRGDLPNPHGPGDGQRHCDLAGVPRRDRSDFIGLGLSACSQIGEVFYRLEDELGEWRARLQSGHMGVAAGLILSEDERMAAEVAQSIACDHALDAAAFEWRNDEPFEDCFAEQLPALSPLLARGWAQWDARVLRLAEEGRLLWRMMAACFRPAAAIA
>NZ_CP025298.1|WP_101765593.1|2669995_2670496_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MSEKIIAKVVDRAQAAIDPAEGIAAVSDPGFGGIDVFIGKVRDVNIGRPVTGITYDLFEPLVLNEFKRLAAEVEATFGPKLKLYVAHAKGRLGIGDVAVVVAAGSPHRDEAFRACRQLIEVVKHQCPIWKQEHYEDGDSAWSEGCSLCHADSEPAHAHDHAHDHHH
>NZ_CP025298.1|WP_049444672.1|2670499_2670760_-|MoaD/ThiS-family-protein
MKQVNLQLFGAFSDLDASREIAVEVAGSTVADLRQALRELLPTRWPGFRAGLLDYSAFADQQRVLRDHEALPDDGRVAILPPVSGG
>NZ_CP025298.1|WP_101765594.1|2670759_2672013_-|molybdopterin-molybdotransferase-MoeA
MIAYSEALQHLLDAATPLPAERLPLHEAGGRTLASDIISGQSLPPFDNSAMDGFALRANGATFEAGTEFTVQGWQAAGDAGAEGGEGAWEIMTGARMPVGLDTVVPVENVDVLASEDGRPTRIALKGTVKPGQNVRLRGQDVSEGERVLQAGQVLDINARTLLHAIGVGQVAVVARPKAAVIATGKELVTEAAQTLESGQIRDSNRPYLVGRLQAAGAEVVWQGTVGDDVAAFNAVLDEALAAGAQLLISTGAVSAGRYDFVPDALRGRGARIVFHKVAIRPGKPLLFAVLPNGALYFGLPGNPVSAAVGQRFFVEPVLRRLLGLAPETVLQLPLQADVRKPPGLRFHARARVEVDGQGRLSARVLSGQESFRLMSMLQANAWVVLEAEGDLATAGTYVRVQGWGHHDPVQLASQES
>NZ_CP025298.1|WP_101765595.1|2672012_2673008_-|bifunctional-molybdenum-cofactor-biosynthesis-protein-MoaC/MoaB
MSGELNAAFHMADVRDKRITRRRAVAVGELHAGPVAYPLIVERRLPKGDALVMAEIAGLQGAKMASMLMPLCHPLPLELVQVFCAPVPERQAIRVWCECASEARTGVEMEALAGVNAALLTLYDLSKPVEPALRIEGIRLLFKEGGKRGVWLHPDGMDDAERARFKPRAPKGLEGAACAVITLSDRASEGTYEDVSGPTLVTGLKKLGGEVVAAEVLPDGIEPLAGRLQALAVEGVRLCLCTGGTGLGPRDLTPEALRSLNARPVHGLAQMVRALSAQHTPMAWLSRAEVVQLGNMLVFALPGSPKAAAQCLDILAPVLGHALAMVEGGGH
>NZ_CP025298.1|WP_049444670.1|2673016_2673997_-|GTP-3',8-cyclase-MoaA
MSQLTDGFGRSFPYLRLSLTEACNFRCSYCLPDGYQADGRPRFLQVDEIARLVRAFAALGMSKIRLTGGEPSLRKDLDEIIATVAAVPGIRKVAITTNGTLLPRRLPGWHRAGLTALNVSMDSLQRERFRTITGHDRLPEIEQGLALAQALGLPAIKLNAVLLRGLNDNELPQWMDYLRDRPFSVRFIELMRTGDNEAYFQRHHLRADLVIEQLLAAGWHERPRAADAGPAREFGHPDHRGSIGIIAPYSRDFCKGCNRLRVTAKGDLRLCLFGEFGVPLRPLLQRDDDHDALLARITTQLGLKAAGHGLHQGQTGLTPHLASIGG
>NZ_CP025298.1|WP_101765596.1|2674191_2674596_+|ribonucleotide-reductase-subunit-alpha
MMMNDFQQLLHAAGQQAEPQRLLFVFVRAELPESPTADQRDRHDRREGGTLSPVLCVDKLPAEVASFQALATESTTTGIDWDLVFVAALDGRAGFAPNSDEAARPLQLMVNAIHDGQIGRFAAFDRGGEPVQFY
>NZ_CP025298.1|WP_101765597.1|2674589_2674919_-|hypothetical-protein
MTATASLHPTPDTPGRSRLWSVFWLQGVIPSNILWAVALWALANQRTPLLLGVFAVLLLYTGWIIPAVWRAAPTARTPNLGVAARGLTVAWGLNTVLVIFFLTLQLVAQ
>NZ_CP025298.1|WP_101765598.1|2675487_2675862_+|hypothetical-protein
MNESDVPHLHAYRSTAHDDGSLQAAPAVDRNTFIANLNRIGSGAAADGQPWPERHQLPGRCLALADADCALSGLRVVLEMLLAAERTRQNGEPEQYVGDRVMEGLVMACQSLCAQAVGRLQPEG
>NZ_CP025298.1|WP_101765599.1|2675907_2676243_-|hypothetical-protein
MPRFLTPDEVSLIHRLLPETTELSERLLKDLALAQVEDVEVVGFGGVVFLSSTTQLFGSDIATAMLADADGVPVRVTLCLDNHDQLFELELWKVDFSPIIGVDLRSAFSEH
>NZ_CP025298.1|WP_158298001.1|2676451_2676829_-|hypothetical-protein
MKFIYILIFAILAGVAIWFFKGLSRGELADKPVYASLQAAELEFRGKPGPDLIYDETGGNLLAGFSVGAQERVWVALNSKKHNGDLLTVPEHGEAKIPCGLVDQLASSNIGDSDVKTALAVSCIK

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Crispr_ID: NZ_CP025298_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025298_5

3092945-3093051

Orphan

Consensus_repeat	Method
CATCCACGCACGGCGTGGATCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025298_5

>merge|NZ_CP025298|5|3092945-3093051|CRISPRCasFinder
CATCCACGCACGGCGTGGATCTACGGGTGGGTGCCGACCGTTGGTCGGCACGATCCTTCCGGGCCATGAACCCCGGTATCGTCCATCCACGCATGGCGTGGATCTAC

>NZ_CP025298|5|5|3092945-3093051|CRISPRCasFinder
CATCCACGCACGGCGTGGATCTAC	GGGTGGGTGCCGACCGTTGGTCGGCACGATCCTTCCGGGCCATGAACCCCGGTATCGTC
CATCCACGCATGGCGTGGATCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025298.1\|WP_014037801.1\|3089282_3090062_+\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
NZ_CP025298.1\|WP_049444791.1\|3100425_3100839_+\|barnase-inhibitor	unknown	unknown	gnl\|CDD\|240164
NZ_CP025298.1\|WP_014037807.1\|3095828_3096455_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP025298.1\|WP_101765794.1\|3090715_3092884_+\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NZ_CP025298.1\|WP_008268808.1\|3084046_3085564_-\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|224862
NZ_CP025298.1\|WP_101765789.1\|3082478_3082820_+\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NZ_CP025298.1\|WP_101765793.1\|3087331_3089203_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP025298.1\|WP_101765791.1\|3085711_3086608_+\|RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|132002
NZ_CP025298.1\|WP_101765796.1\|3098190_3099039_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP025298.1\|WP_049444810.1\|3094192_3095074_-\|DUF3298-and-DUF4163-domain-containing-protein	unknown	unknown	gnl\|CDD\|379356
NZ_CP025298.1\|WP_101765798.1\|3100971_3102732_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP025298.1\|WP_014037808.1\|3096462_3098028_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340905
NZ_CP025298.1\|WP_005417588.1\|3095111_3095414_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NZ_CP025298.1\|WP_101765795.1\|3093057_3094173_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP025298.1\|WP_014037810.1\|3099973_3100426_+\|ribonuclease	unknown	unknown	gnl\|CDD\|238340
NZ_CP025298.1\|WP_075677299.1\|3090105_3090585_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NZ_CP025298.1\|WP_101765790.1\|3083586_3083922_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_049444771.1\|3082893_3083529_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP025298.1\|WP_101765797.1\|3099142_3099754_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP025298.1\|WP_101765792.1\|3086644_3087094_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039

Protein	Function_ID	Function_description	E-value
NZ_CP025298.1\|WP_014037801.1\|3089282_3090062_+\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	8.78639e-116
NZ_CP025298.1\|WP_049444791.1\|3100425_3100839_+\|barnase-inhibitor	gnl\|CDD\|240164	cd05141, Barstar_evA4336-like, Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.	1.08321e-25
NZ_CP025298.1\|WP_014037807.1\|3095828_3096455_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	5.19101e-16
NZ_CP025298.1\|WP_101765794.1\|3090715_3092884_+\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NZ_CP025298.1\|WP_008268808.1\|3084046_3085564_-\|fumarate-hydratase	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	1.36593e-145
NZ_CP025298.1\|WP_101765789.1\|3082478_3082820_+\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	1.56582e-51
NZ_CP025298.1\|WP_101765793.1\|3087331_3089203_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.02845e-101
NZ_CP025298.1\|WP_101765791.1\|3085711_3086608_+\|RNA-polymerase-sigma-70-factor	gnl\|CDD\|132002	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.	3.54206e-111
NZ_CP025298.1\|WP_101765796.1\|3098190_3099039_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	3.16737e-08
NZ_CP025298.1\|WP_049444810.1\|3094192_3095074_-\|DUF3298-and-DUF4163-domain-containing-protein	gnl\|CDD\|379356	pfam13739, DUF4163, Domain of unknown function (DUF4163). The structure of this domain is and alpha-beta-two layer sandwich, identified from a Fervidobacterium nodosum Rt17-B1 like protein. The function is not known except that it is found in association with Heat-shock cognate 70kd protein 44kd ATPase, pfam11738.	3.7308e-08
NZ_CP025298.1\|WP_101765798.1\|3100971_3102732_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	6.74977e-13
NZ_CP025298.1\|WP_014037808.1\|3096462_3098028_-\|MFS-transporter	gnl\|CDD\|340905	cd17347, MFS_SLC15A1_2_like, Solute carrier family 15 members 1 and 2, and similar Major Facilitator Superfamily transporters. Solute carrier family 15 member 1 (SLC15A1) and SLC15A2 are members of the proton-coupled oligopeptide transporter (POT) family of integral membrane proteins that mediate the cellular uptake of di/tripeptides and peptide-like drugs. They mediate the proton-coupled active transport of a broad range of dipeptides and tripeptides, including zwitterionic, anionic and cationic peptides, as well as a variety of peptide-like drugs such as cefadroxil, enalapril, and valacyclovir. SLC15A1, or peptide transporter 1 (PepT1), is primarily expressed in the brush border membranes of enterocytes of the small intestine and is also known as the intestinal isoform. SLC15A2, or peptide transporter 2 (PepT2), is abundantly expressed in the apical membrane of kidney proximal tubules and is also referred to as the renal isoform. Both proteins transport di/tripeptides, but not tetrapeptides or free amino acids, using the energy generated by an inwardly directed transmembrane proton gradient. The SLC15A1/SLC15A2-like group belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.43367e-76
NZ_CP025298.1\|WP_005417588.1\|3095111_3095414_-\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	2.58052e-26
NZ_CP025298.1\|WP_101765795.1\|3093057_3094173_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP025298.1\|WP_014037810.1\|3099973_3100426_+\|ribonuclease	gnl\|CDD\|238340	cd00607, RNase_Sa, RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.	6.6472e-43
NZ_CP025298.1\|WP_075677299.1\|3090105_3090585_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	2.05698e-91
NZ_CP025298.1\|WP_049444771.1\|3082893_3083529_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.00574e-38
NZ_CP025298.1\|WP_101765797.1\|3099142_3099754_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	5.70428e-109
NZ_CP025298.1\|WP_101765792.1\|3086644_3087094_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	2.35576e-30

>NZ_CP025298.1|WP_101765794.1|3090715_3092884_+|M3-family-metallopeptidase
MTTRLALAVAMSLGLALPAFSAGAATPAASTTAQQANPFFAESPLPLHFPQFDKIKDSDFAPAFDAGMAQQLKEVEAIANNKAKPTFDNTIIALEKSGDILDRATTVFFSLVGADTNDTRKKLQADYSAKFAAHSDAIALNGKLFARIQALYDTRSQLGLDAEGVRLVEKYYDNYVRAGAKLSEADKAKLKEMNAELANLGTKFSQNVQSEVNASAITVDDVKELAGLSKEQIAAAAEAAKARGLEGKYVITLLNTTGQPPLTNLANRALRQKIYEASTTRGSRGGEFDNTALVSRIMQLRADKAKLMGFPNFAAYNLTNQTAKTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAARKPTFQLEPWDWAFYSEKVRQAKYNFDESQLKPYFELKNVLENGVFYAAGQEFGLTFKQRTDLPVYHDDVTVYDVFDADGSQLAIFIFDPYARASKRGGAWMNSYVSQSKLTGFKPVVANHLNIPKPPAGQPTLLTWDEVNTTFHEFGHALHGMFSNVKYPYFSGTSVPRDFVEFPSQVNEMWSDNPVILKNYAKHYQNGSAMPQALLDKVIAASKFNQGFATTEYLGAAMLDQNWHQIGPDQVPAAKDVMAFERAALEKDGIYYAPVPPRYKTPYFSHIMGGYSAGYYAYIWSEVLDANTQKWFKDNGGLSRKNGDHFRATLLSKGGSVDAMQLFRDFAGHEPQIEPLLEKRGLTGAGN
>NZ_CP025298.1|WP_075677299.1|3090105_3090585_-|glutathione-peroxidase
MTTAYDFSFRDLDGQPQALARYQGHPLLLVNVASRCGFTPQYTGLEQLWQDYRERGLVVIGFPCNQFGAQEPGDAAQIRQFCSLDYPVSFPLSEKIEVNGDGADPLWAWLAREKRGLLGSARIKWNFSKFLVDRQGRVASRHAPTTRPEQLRGEIEALL
>NZ_CP025298.1|WP_014037801.1|3089282_3090062_+|ferredoxin--NADP-reductase
MSSAFGAETVLEVRHWTDAYFSFTLTRDSGFRFENGQFVMIGLETEARPLLRAYSIASANWEEHLEFFSIKVQDGPLTSRLQHIKPGDKVLVGKKPTGTLLISDLHPGKNLYLLGTGTGMAPWLSVIKDPETYERFEKVILCHGVRYEKDLAYRDYFEKELREHEFLGEMIGDKLLYYPAVTREPFANQGRLTSLMESGEMQRTLGLPELSPENDRAMICGSPQMLADLRAVLDARGFQVSPRIGQPGHYVFERAFVEK
>NZ_CP025298.1|WP_101765793.1|3087331_3089203_+|ABC-transporter-ATP-binding-protein
MPASPTAGAAAAKKPSLRQRFRAMRNLPPFLRMVWQTSPALTLASLGLRLIRALLPVAMLYVGKLIIDSALHLSQHDAGFPPLGEALSSGVLNPLLGLLALEFGLAIASDLLGRLVSYADALLSELFANVTSIRLMEHAATLDLEDFEDPDLQDKLDRARRQTMGRMNLMSQLFGQVQDAITVASLAVGLLVYAPWLILLLALALVPAFIGESHFNAAGYSLNFQWTPERRQLDYLRQLGASVETAKEVKIYNLHRFLVERYRRLSVALFQANRALARRRAFWGTLLAALGTLGYYTAYAYIAWRTVRGDFSIGDLTFLAGSFLRLRQLLEGLLIGFSQVASQALYLDDLFSFFQIQPEIHSREGAVRVPQPIRQGFVFENVGFRYPDAEQWAVRHLDFQLRAGEVLALVGENGAGKTTLVKLLARLYEPDEGRILLDGRDLRDYDLDDLRANLGVIFQDFVRYNLSAGENIGVGQVEAMADQARIADAARRGMAEEVIDDLPGGYDQLIGRRFKQGVDLSGGQWQKIAIARAWMRNAQVMILDEPTAALDARSEFEVFQRFRELADNRTAVLISHRFSSVRMADRILVLADGRIEASGTHEQLMAQGGRYAELFELQAAGYR
>NZ_CP025298.1|WP_101765792.1|3086644_3087094_+|carboxymuconolactone-decarboxylase-family-protein
MSDHASPRVPYTRLAAEAFKGLLATSQAVHDSSIDPTLMELVFLRVSQLNGCGYCMDMHGTALRKDGIEPRKLDTLPAWHESRFFDARERAALGWAEALTRLTDGAPSQAAFDALAPHFDEKGISDLSMGIAVINAWNRLGAGLLPPLP
>NZ_CP025298.1|WP_101765791.1|3085711_3086608_+|RNA-polymerase-sigma-70-factor
MNAETAFQTHRPRLMALAYRLLGSRADAEDVVQDAWLRWSGADPAAVRDPEAWLVTTTTRLGLDRLRAAKRERVHYVGPWLAEPLAVTLEPDPAPGPAQLHALADDVSVAFLTLLEQLGPEERAAFLLKEAFDHDYREIADLLGHSEANCRQLVHRARQRLQAGRPRFNADASQYRQLLARFMDASQRGDSEAIQALLHANAVLVSDGGGVVTAAVRPLLGAERIGRLFWAIARRGAVHPAQLGYVNGEPAILRFQGDRLHSVTTIEVVDGRIANVYSVLNPEKLPGVVTRDDGAASW
>NZ_CP025298.1|WP_008268808.1|3084046_3085564_-|fumarate-hydratase
MTSIKQEDLIQSIADALQYISYYHPVDYIKNLAAAYEREESPAAKEAMAQILINSRMCAEGHRPICQDTGIVTVFLEIGMDVRWDDATMGVEDMANEGVRRAYMHPDNKLRASVLADPAGKRINTKDNTPGVVNVKVVPGNTVDVIVAAKGGGSEAKTKFAMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAMLLAKEALMEPIDITELQARGASNRIEELRLELYEKVNALGIGAQGLGGLTTVLDIKINDYPTHAANLPVAMIPNCAATRHAHFTLDGSGPVMLDPPSLEDWPKLTYDASKGTRVDLDTITPEDVASWKPGQTLLLNGKLLTGRDAAHKRMVDMLNKGEQLPVDLKGRFIYYVGPVDPVRDEVVGPAGPTTATRMDKFTRQVLEQTGLLGMVGKAERGPAAIEAIRDNKSAYLMAVGGSAYLVSKAIKAAKVVGFADLGMEAIYEFTVQDMPVTVAVDSTGESVHKTGPREWQARIGKIPVVVE
>NZ_CP025298.1|WP_101765790.1|3083586_3083922_-|hypothetical-protein
MTLLRTIMVGVVLALAGCSTPASYEGADFSASSQCRMQCQAGYRSCMAQGSTGNSAFSCEQQVVPAPDKRCKDVANPELRRACELKAHDCTMRAPMMSCGERRDTCMSSCG
>NZ_CP025298.1|WP_049444771.1|3082893_3083529_-|glutathione-S-transferase-family-protein
MSTTLYGSTSTAALVVHWLLIELGIEHELVLLDFDAREHKSAEYLALNPAGVVPTLLIDGLVMTEAAAIALYLADRHPDAHLLPALGTPQRADAYRWMFWCANTLQPAYRAWFYPNEVAGEANVEASREMARQRLEAAWQHVATHLLAHGPYLLGATPCVVDYMLVMLMRWSRNMPRPSDTWPPLKAHATAMKARPAFAEVYRREGITDWR
>NZ_CP025298.1|WP_101765789.1|3082478_3082820_+|arsenate-reductase-(glutaredoxin)
MDVTIWHNPACSNSRGALKLIRDAGFDPVVIEYLGNPPDAATLRQVLAESALSARDLVRSKETQFAELGLEDADDATLLAAMAEHPHLINRPVVRTPKGTRLCRPPETVLEIL
>NZ_CP025298.1|WP_101765795.1|3093057_3094173_-|cyclopropane-fatty-acyl-phospholipid-synthase
MDTGLQERVAGLLHEAGVRIGGTQPQDIQVHDPRFFARVMGHGSLGLGESYMEGWWDANVLDEFLVHLMQAHLDERVHGWREVADALKARLFNLQVGQGSYEVGRRHYDLGNDLYQAMLGQRLVYSCGYWRNADDLDAAQEAKLDLVCRKLGLRPGQRVLDIGCGWGEALKFAAERYGVSGVGVTISQEQAEFARELCAGLPIEIRLQDYRELDEPFDAIFSIGMFEHVGDKNYGSFFEVAKRCLSPRGLLLLHSIGTNISRHRTDPWIARYIFPNSMLPSAVQITRAFEGHFVLEDWHNFGTDYDLTLQAWRRNVEAAWPRLDAHYDEHFRRMWRFYLAGSMATFRCRHAQLWQLVLSPEGVPGGYVAPR
>NZ_CP025298.1|WP_049444810.1|3094192_3095074_-|DUF3298-and-DUF4163-domain-containing-protein
MYKHEQGIPMKIGNNRPLHGSVLAGVVGVLLLAGCQRESEPAPATDAAPAAEATAAGETPATEAPLDLRDVIENNEREVVGISYPAGIDRYPGLARALQSYATSARSDLQQALDGLGNDKPTMPYELSLSFEKLLETPQLVVISADGSRYTGGAHGEPLVARFVWLPQHQQMLSAEKLVADAKGWKAISDFVADQLRERVATRLSGEDMDPAQLQESLRNASRMIADGTGPQADNFSQFQPLTDDKGQITALRFVFPPYQVGPYSDGTQTADVPAAVLLPHVARDYVELFARG
>NZ_CP025298.1|WP_005417588.1|3095111_3095414_-|N-acetyltransferase
MASVTPPGLAYEVEHDLANHRFTARVRGQLAVLDYQIKRKRMVITHTEVPEPIAGRGIAGELTRVALRFAREQKYKVVPACSYAEAFLQRHEEYHDLLVG
>NZ_CP025298.1|WP_014037807.1|3095828_3096455_-|rhomboid-family-intramembrane-serine-protease
MTPVNLLLIAITAILSWMAFNNRKLADRLILWPPAIDRHRQYDRLVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLTYPAFYIGALLVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILIKPWSIILVFFIPAPAIIYAAFYVGYSIWMDKRGGDRINHSAHLAGAAFGVIFMLAMQPSIFNHFLRELSNPTFRLGGG
>NZ_CP025298.1|WP_014037808.1|3096462_3098028_-|MFS-transporter
MSHDAVAPIAGQGKMPRQIPYIIGNEACERFSFYGMRNILVQFLITSLLLQEITAEGRAGEAKDIMHSFMIGVYFFPLLGGWLADRFFGKYHTILWFSLVYCAGHLCLALFENSREGFFLGLGLIALGAGGIKPLVASFMGDQFDQSNKHLAKIVFDAFYWIINFGSLFASLLIPLVLKNWGPQWAFGIPGILMFIATFVFWLGRKRYVLVPLPPKDPHSFANVVRTALTARVAGQGRPGLVIAVLGLVLAVASFGLVGSLGIVICLCLALVAILAGIGGGTWLQLDRARGQHPAEAVEGVRSVLRVLVIFALTTPFFSLFDQKASTWVLQGQQMQMPSWFTASQMQALNPLLVMILIPFNNLVLYPALRRFGFEPTALRRMTAGIAFSGLAWIVVGGIQVVMDGGNAMSIFWQMLPYALLTFGEVLVSATGLEFAYSQAPQAMKGVVMSFWNLTTTIGNLWVLLSNAAVRNDTVTHQIAGTGLSEAAFLMFFFAGFAFVAALAFGWYAKRYRMVDNYRSA
>NZ_CP025298.1|WP_101765796.1|3098190_3099039_+|endonuclease/exonuclease/phosphatase-family-protein
MRPLAHARLLLSCLLLLLALQAQARPQAPTAAASESEPRQLTVAALELPSRDDAQWKQRREQVAQLLTELQPDVISVQQVLQQQGRNPACWLASRLRYSCDFVTADPPSQPLRHGNAMLTRLPVSEDGVTLLHPPGTFSAAGMMRLKLGEALVNIYVARLRPDPDEATARQHQTSDLMTWIGATAEGMPSLIAGDFSANTVELVRSTPGFQPARRNPGGRAEAPAASGGGSSGHGLDVLFQVKHFGGIRQQPILLPADGDLPGLRLGVLATLRLQGITATAE
>NZ_CP025298.1|WP_101765797.1|3099142_3099754_-|superoxide-dismutase
MAYTLPKLSYAYDALEPHIDAATMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVKKLKSLPENLQGPVRNNGGGHANHSLFWTVMAPNAGGNPVGGVAKAIDKDLGGFDKFKDAFTKAALTRFGSGWAWLSVTPDKKVVVESTGNQDSPLMEGNTPILGLDVWEHAYYLKYQNRRPEYIGAFFNVIDWNEVERRYQEAIA
>NZ_CP025298.1|WP_014037810.1|3099973_3100426_+|ribonuclease
MRNPRLLITAIALLLLGLVANHFLQRPPAPQFAPDLQGTPAARAPATASPGKDSGLPAFLPAEARATIALIQRGGPFPHRQDGSTFGNREQQLPQRARGYYREYTVDTPGARTRGTRRIVTGGDPPEAWYYTDDHYASFRSFTVPAQGAQ
>NZ_CP025298.1|WP_049444791.1|3100425_3100839_+|barnase-inhibitor
MSHDDFGLGLHDINNAGVYAIDSDDIGALAAAMRDAGLKVIRIDLEGVADKRTLLARLAAQLDFPAGFGGNWDALSDNLRDLQWLPANGYALFLADVDALRTGAQKDFDTLLDVMDETSRDWVGRDVPFWVFLSQSA
>NZ_CP025298.1|WP_101765798.1|3100971_3102732_-|hypothetical-protein
MPLTRAEQLIDLLLARQQPRAVLEKTTRLPYGWALWLRSLGPLPRPFHARDVIAVFLPRPLPGPPGQSPRLSPWQALRRLFWQDWDAAPRDQRWMRWTSALVSALLHLLFFMLLLWVAVIRTTAPDEEGAEGERVQVEFVGSATQEGGGDQPGAEATAAAAAGRVATGQEAGAATAPAPRPVAAEAAASSPASAPTVSVPPPPAEAEPAPVAAPPPSPVQATEVAQASTDFVVPPVSVPRTEVSVVPRDSTPVVRERSVQPVQAPPTPSQVRTPELAVRTPQVRDIQVREREVSTVDAPVAPQPLRSAEMQVRVPQQDVQVREREVQAVADPQVRMAAVAGREPAVRAPTGRDVQVREREVASAPVAVPASSSGSATAAPATAAQGSATQASSSTRPSASSNTPANAGARPAPDPGNWATPAKGDDWGSSSRNRDGASSGARQASTAGKGSGLFNADGSVRVPGQEGDGHAERGAPGGANDGWSKERIAQSGTWLKRPPYDYTPTSFDKYWVPQESLLAEWVRKGVKAMEIPLPGTNTRISCVISILQAGGGCGLTNPNMQDQPAVARPPPDIPFKKELQEDNGSR

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Crispr_ID: NZ_CP025298_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025298_6

3353125-3353211

Orphan

Consensus_repeat	Method
GCCATCCACGCATGGCGTGGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025298_6

>merge|NZ_CP025298|6|3353125-3353211|CRISPRCasFinder
GCCATCCACGCATGGCGTGGATCTACTGACCTCTGGTGGGTGCCGACCGTTGGTCGGCACTGCCGCCATCCACGCATGGCGTGGATC

>NZ_CP025298|6|6|3353125-3353211|CRISPRCasFinder
GCCATCCACGCATGGCGTGGATC	TACTGACCTCTGGTGGGTGCCGACCGTTGGTCGGCACTGCC
GCCATCCACGCATGGCGTGGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025298.1\|WP_101765881.1\|3358773_3360102_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|182626
NZ_CP025298.1\|WP_158298003.1\|3357358_3357463_-\|transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP025298.1\|WP_075677046.1\|3347021_3348380_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NZ_CP025298.1\|WP_158298004.1\|3357596_3357929_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NZ_CP025298.1\|WP_014038018.1\|3361354_3361726_-\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|378240
NZ_CP025298.1\|WP_014647924.1\|3350974_3351457_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP025298.1\|WP_075677048.1\|3345916_3346837_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP025298.1\|WP_101765875.1\|3349630_3350875_-\|DUF418-domain-containing-protein	unknown	unknown	gnl\|CDD\|225193
NZ_CP025298.1\|WP_101766432.1\|3343180_3344764_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NZ_CP025298.1\|WP_101766433.1\|3345581_3345890_-\|cysteine-methyltransferase	unknown	unknown	gnl\|CDD\|226219
NZ_CP025298.1\|WP_101765876.1\|3353302_3354637_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP025298.1\|WP_101765877.1\|3354791_3356498_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|214515
NZ_CP025298.1\|WP_005414115.1\|3352239_3353013_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP025298.1\|WP_049447171.1\|3360388_3361267_+\|geranyl-transferase	unknown	unknown	gnl\|CDD\|182567
NZ_CP025298.1\|WP_049445709.1\|3351568_3352108_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP025298.1\|WP_101765882.1\|3360138_3360399_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP025298.1\|WP_101765878.1\|3356494_3357040_+\|WG-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379719
NZ_CP025298.1\|WP_005410509.1\|3344813_3345488_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP025298.1\|WP_049445618.1\|3348376_3349627_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NZ_CP025298.1\|WP_101765883.1\|3361813_3363181_-\|metalloprotease-PmbA	unknown	unknown	gnl\|CDD\|182922

Protein	Function_ID	Function_description	E-value
NZ_CP025298.1\|WP_101765881.1\|3358773_3360102_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|182626	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.	2.67451e-105
NZ_CP025298.1\|WP_158298003.1\|3357358_3357463_-\|transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.61402e-09
NZ_CP025298.1\|WP_075677046.1\|3347021_3348380_-\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NZ_CP025298.1\|WP_158298004.1\|3357596_3357929_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	9.16109e-05
NZ_CP025298.1\|WP_014038018.1\|3361354_3361726_-\|DUF4870-domain-containing-protein	gnl\|CDD\|378240	pfam09685, DUF4870, Domain of unknown function (DUF4870).	2.42282e-35
NZ_CP025298.1\|WP_014647924.1\|3350974_3351457_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	3.66751e-54
NZ_CP025298.1\|WP_075677048.1\|3345916_3346837_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.88122e-10
NZ_CP025298.1\|WP_101765875.1\|3349630_3350875_-\|DUF418-domain-containing-protein	gnl\|CDD\|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	1.89832e-86
NZ_CP025298.1\|WP_101766432.1\|3343180_3344764_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	9.15552e-106
NZ_CP025298.1\|WP_101766433.1\|3345581_3345890_-\|cysteine-methyltransferase	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	7.12715e-21
NZ_CP025298.1\|WP_101765876.1\|3353302_3354637_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	2.13395e-115
NZ_CP025298.1\|WP_101765877.1\|3354791_3356498_+\|alkaline-phosphatase	gnl\|CDD\|214515	smart00098, alkPPc, Alkaline phosphatase homologues.	8.99526e-130
NZ_CP025298.1\|WP_005414115.1\|3352239_3353013_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	8.66042e-41
NZ_CP025298.1\|WP_049447171.1\|3360388_3361267_+\|geranyl-transferase	gnl\|CDD\|182567	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase.	4.97618e-96
NZ_CP025298.1\|WP_049445709.1\|3351568_3352108_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	2.39114e-40
NZ_CP025298.1\|WP_101765882.1\|3360138_3360399_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	7.96098e-21
NZ_CP025298.1\|WP_101765878.1\|3356494_3357040_+\|WG-repeat-containing-protein	gnl\|CDD\|379719	pfam14903, WG_beta_rep, WG containing repeat. This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).	0.000687232
NZ_CP025298.1\|WP_005410509.1\|3344813_3345488_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.36451e-38
NZ_CP025298.1\|WP_049445618.1\|3348376_3349627_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	7.72159e-76
NZ_CP025298.1\|WP_101765883.1\|3361813_3363181_-\|metalloprotease-PmbA	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	6.2711e-169

>NZ_CP025298.1|WP_005414115.1|3352239_3353013_+|C40-family-peptidase
MTTDDLKSEGQTSVSSRSARPLLLGLALCLTSLPAWSQTAPNRSDVTPAPVAESTARPAAKAEAAAPQRSRVDAAASATLAALLPHLAANDTIPLMDRSAVVAGDLSRLLANYDTSSAANGSVVGTAADNGKVQSLLRRAMTLLGTPYRWGGSNPDSGFDCSGLVGYVFRSALGIELPRVSREMAHDDNAELINDRTALAAGDLVFFGRKGRVDHVGIYVGDGRFLHAPSSGKDVRVDTLLSGYWGNKFMQARRVDL
>NZ_CP025298.1|WP_049445709.1|3351568_3352108_+|C40-family-peptidase
MHITPVSSGLRRFLAPALLLALPLLMTACGGGKATRPAPPPPTANWPKTVPDNPEAANSVLMRAISLVGTPYRYGGNTPDSGFDCSGLVAYVYREMLDLRLPRTSRDLAAVQGPKIDPQRLATGDLVFFGSRGSVTHVGIYVGEGRFVHAPSTGGTVRLDSLSGPYWKDHYTGAKRVLR
>NZ_CP025298.1|WP_014647924.1|3350974_3351457_-|peptidylprolyl-isomerase
MKIEKDRVVRFHYTVSEVGQEPIESSKDRGEPLAILIGHGNIIPGLENAMMDKEAGATFNVDVKAADAYGERREGLSQRVPKKHFGNTKLAPGQQVVLQTNFGPRAVTVQKVGMSVVDVDLNHPMAGKDLHFDVEIVDVREAGKEELDHGHVHGDGGHQH
>NZ_CP025298.1|WP_101765875.1|3349630_3350875_-|DUF418-domain-containing-protein
MADLSDGPPVNAASPSLQPVASGERIAVLDVLRGAALLGILLMNIEAFSGPLDLAFTGIDVHWRGIDYWADAFVYVFVQGKFFTLFSLLFGAGFAVMAQRAEVAGRDFTPFYLRRSAGLLLIGLCHALLVWSGDILVMYALISLPLLACREAPRSWLPWMGVIVYLGGVAMMLLVGAMVSMASAEEVRGMLAEAQQSIDLQRQVYGQGSWAQANVQRLSEFGTSMGALLITGPEVLGMFLIGSWFAGSGALATPERFPRLYASLRWIALPLGLLVTLLGVAWKPYLAPGAYNLPVTAAMALVTVGGLPMCLGYLAWIVHWRTRLAWLAPVGRMALTHYLGQSLLCTWTFYHYGLGRFEMMPRSVQLLFALLLFAAQVVISHLWLRRFRFGPIEWVWRAMTYRQWPPMRRGAAQG
>NZ_CP025298.1|WP_049445618.1|3348376_3349627_-|FAD-dependent-oxidoreductase
MQGAHEDVIVVGAGAIGLAAALALRAQGRQVRVIDRGRVGGATSHGNCGTVTPSHAPPLAAPGVPLRALRWMLDPRAPLYVRTRLDPTLWRWLLQFGARCNARDWLHSTRARGALLNDSRLRLAHWVQTHALDCEFAARGLDYVFGDARNFDHHAAECEALNAQGIVTACIDGGDYARDNPAFHDRLAGAIHFPGDAQLRPDRYTAELARVLRAQGVVIDEQVDVQGFSDDAQGVRVQAGQQTVRARELVLATGPWSRDWARQLDLRVPIQPGKGYSLTWSRPEQVPQRPVVLKDHSVFVIAWRDALRLGGTMEFAGADPQLRTRRLQALQQAADHYLRAPRGAQLQEQWCGWRPMSVDDVPLIGRAPAHPHVWLAAGHGMLGISMSAGTGQLIADLVCGRTPAIDPAPYRPERFR
>NZ_CP025298.1|WP_075677046.1|3347021_3348380_-|glutathione-disulfide-reductase
MSTASYDYDLIVLGGGSAGLAGAIRAAQHGKRVAMLEPGELGGTCVNVGCVPKKAMWLAADLHERIGLASAMGFDVQARPALSWKELVIHRQAYISNIHTSYHKRLDETGVVRIPARGHLLDAHTVACSDGVRYSAEHILIATGAHPLRPDIPGAELGLVSDDFFDLRAAPAEVAIIGGGYIAVELAGLLQALGSRVSLLVRGKRLLERFDYELTDQLAENLKQQGVRIHFDYRLRELQRDGERVRAFGHDGPLDNVFDAVFFATGRRGNSRDLGLEALGIGIGEHQQVQVDEWQTTSVPSVHAVGDIAGKVGLTPVAVAASRRLMDRLFGGRPQSKMDYGNVASVVFSHPPLGAVGMSEEEARARFDQVSVYHSRFRPMLQALANGTQRSLFKMVCAGPDERVVGIHLLGEAADEILQGFAVAVKMGATKAQFDDTVAIHPTSAEEVVLMR
>NZ_CP025298.1|WP_075677048.1|3345916_3346837_-|DMT-family-transporter
MSNTASRIATASPRIALGGIGLAAIGAIAASGKAIIVKLGLRHGVDATTLLALRMLMALPLFALMAVWAARRAEPLSWADRARVLWLGFTGYYLSSLLDFQGLQYISVTLERLILYLNPTLVLLINVLLARQRPGRWQIGALVLSYLGVLLAFGHDLQREGGQIIVGSLLVLGSALSYALYLFGSGQVVARIGAVRLTAYASCVASVLVLLHFAVTHPLPLLWQAPAPVQWLSLVNATVCTVLPVLAIMLAVQRVGSSLAAQVGMLGPVSTIVMSLWLLDEPMGPAQIAGTVLVLIGVLLVTRLRR
>NZ_CP025298.1|WP_101766433.1|3345581_3345890_-|cysteine-methyltransferase
MAVIRAIPAGQVMGYGQVAMRAGLPGRARLTARILGQNDDPDLPWHRVLRSDGRIAMEEGSAGWREQSQRLRAEGVRVENGRVRMPVTDPAAALDAAVWGPG
>NZ_CP025298.1|WP_005410509.1|3344813_3345488_-|rhomboid-family-intramembrane-serine-protease
MFPRLPTVTKALLIANAILFLLQQPFLLGMQTFEPFMLQPLQQGFDAFSPGGNFQPWQLLTYGFLHGSFGHLFFNMLAVFMFGAPLEQTWGEKRFLLYYLVCVAGAGVCQLLVGTLLENPATVLGASGGVFGLLLAYGMLFPNQRVMLLFPPIPMKARTFVILFGVGELVLGMTGWQPGVAHFAHLGGMLFGWLLIRYWRGQPPFNKRRPPGPPKRPNHLRSVK
>NZ_CP025298.1|WP_101766432.1|3343180_3344764_+|NAD(P)/FAD-dependent-oxidoreductase
MTWDAIVVGGGHNGLVCAAYLARAGKKVLVLERRGVLGGAAVTEEFHPGFRNSVASYTVSLLQPKVIDDLQLHAHGLRIVNRPANNFLPLEDGRYLLSAPGRTQAEVAKFSERDAQRLPEYEARLKIFADVLRAWALRAPPDVGVAGGWRALPALWQMGRLGRELATLDVSLRQELLDLFTLSAAEYLDRWFESEPIKALFGFDGIVGNYASPYTPGSAYVLLHHVFGQCNGVKGAWGHAIGGMGAISQAIAASAREAGAELRVEAGVQRVRIEQGRAVGVELANGEILRARAVVANVNPKLLYEQLLEPAQVPNATRERMANWRCGSGTFRMNVALSRLPDFSALPGPGDHLSAGIIMAPSLDYMDRAWLDARRDGWSREPIVEMLIPSTLDDSLAPPGQHVASLFCQHVAPVLPEGRHWDDHRETVADLMIATVERHAPGFTASVLGRQVLSPLDLERTFGLVGGDIFHGALSANQLFSARPMVGQAGYRGALPGLYLCGSGTHPGGGVTGAPGHNAAQVVLQDL
>NZ_CP025298.1|WP_101765876.1|3353302_3354637_-|dicarboxylate/amino-acid:cation-symporter
MKLVSAWLRIPFWQRVVGGFVLGALAGWALGPAAETWFGPLGELYVTLIKMIAVPLVFFAVINAISSLHGQKSVAALSGRTFLWFVITAALAVCVGLGVGTVLQPGAGGLQLSMASNYVPREVPSVVQVLLDVVPANVFYALSGIGTKVNAAGETVLAAGRGSILPVIFFAGLVGFAIVKLGEKVTEARKLVGQMSDIMIQVTRFVLEVTPIGTFGLIAGLVGSYGFEKLLPLGHFVLALYVACALHIVLVYSALLLAHGLNPLKFFRGAAPGMQVAFVSSSSFAAMPVALRSITHNLGVNKDYGSFAVPLGASIKMDGCGAIYPALCAVFIAQYSGVPLTPEQYVVVLIASVLGSFGTAGVPGTAVIMATVVLSAANLPLETIGYLYAIDRILDMMRTMTNVTGQMLVPVIVAKETGLLDQAVYDNPSSNVGVDDPDPTPPRG
>NZ_CP025298.1|WP_101765877.1|3354791_3356498_+|alkaline-phosphatase
MRRSVSLLAACATTLLLGACASTAPASAPAGLKVTVDPVAHPAGETPQWWYRSGAAQAAANGAMSGKAKNVILFLGDGMSLTTVAASRIYEGQQKGGSGEENLLSWERFPATAFSKTYNTDSQTPDSAGTMTAITTGVKTHMGAIGVSAGSRTDCADSLSKGLLTWLQLADSAGLATGVVSTARLTHATPAATYAHSPERNWENDTDLTEAAKAAGCKDIAQQLLSTSRYGRGPLVALGGGRGEFTTVEERDPEYDDKVGQRLDGRSLVQEWQQAHPQGAYVWNSKQLAAAANAPAILGLFEPDHMRYEYERPQDPGGEPSLAELTAAAIKNLAKHQEGYVLMIEGARIDHANHSGNAYRALTETVALSDAVRVANELTSADDTLIIVTADHSHTLNFVGYPARGNPILGKVKDKGGEDGAGKLDYALDGSGQPYTTLTYANGPGHTGASNQQPAGAKRYPHNPSSFEPANGRPNLREVDTEHPDYMQEALVPMKAESHGGEDVGIWARGPGSKAIRGTLEQNAIYHMIVQATPALRERLCQAGTCDDKGVPVQLPAPTAFERKAEAK
>NZ_CP025298.1|WP_101765878.1|3356494_3357040_+|WG-repeat-containing-protein
MIVRQARPAPARGRFTRSLVLLGALASSSALAQAPACKLLTDEHGLWPLPNCEVVDHRPKISADTLKDLNYDDHGLAVVYADQGFHYVDRKGRSLPVLTWDNGPETPQEGLLRARVGNRVGYFDLKFRQVVPGTFDFGWPFQDGVAEVCNGCRRGTPDADGHTPMEGGERFRIDRSGRRVK
>NZ_CP025298.1|WP_158298003.1|3357358_3357463_-|transposase
MVQSMSRPGNCWDNAVVESFFATLKTEAAEPYGQ
>NZ_CP025298.1|WP_158298004.1|3357596_3357929_-|IS3-family-transposase
MASKQQLWRRRLVRALRARNHPVGHKRVARLMAEERIQGRPKADSGPNPPAAHLSSPPNLLDRQFAPEPDRRRGSEISRMSPPPGMAASGRGHQRPDPAGAGLQRFQAPD
>NZ_CP025298.1|WP_101765881.1|3358773_3360102_+|tRNA-lysidine(34)-synthetase-TilS
MQGAALPSNPILAAVTAFPALVPLDAPLLVGYSGGVDSTVLLHWLWRCAQASGTALRAVHIHHGLQPDADGWVLHCQQQCAARGIELAVHRVHVDNSAGLGPEGAARQARRAAFAAELRDGETLALAQHLDDQAETFLLRALRGSGVDGLAAMSAHSCLGEQPLWRPLLAVPRSALLDYAHQHALRWIEDPSNADDHADRNFLRLQVLPLLRQRWPHAAAALAGSALHYRQTRELLDEEDAELIAHLEVAPRVLSLQLLRQVSPGRAARVLRAWAIGHGAAPLPATVLQQALDELLSAGNDRQARVRWHDHAIQQWRDHAYLLPAQLPALPHDWLAGWDGCAPLALPDGGQLRLLGAAAFERPLQVRARVGGERILLPGRQHSHALKDCLQREHLAPWRRAQLPLVFDGPQLLAAADVVIAAPLQAWLQAHDAQLQWRPGGW
>NZ_CP025298.1|WP_101765882.1|3360138_3360399_+|exodeoxyribonuclease-VII-small-subunit
MAKKSPENASPVAQFEQSLESLEQLVEQMETGELSLEASLSAYERGVGLYRQCQQALEQAALRVRLLSDPAQPETAEPFDPPSHDG
>NZ_CP025298.1|WP_049447171.1|3360388_3361267_+|geranyl-transferase
MTAEVLFARWRDRIESQLDAALPSPAEAPQGLHQAMRYSVLGGGKRMRPLLVYASGHLFGALPENLDAAAMAVELIHAYSLVHDDLPAMDDDALRRGKPTTHIAFDEATAILAGDALQTRAFGLLADAPLPATLRVACLQTLAHASGASGMCGGQALDIDATGQQQTLAALTRMHALKTGALIRAAVRMGALCGQAHEPQLAQLDGFADALGLAFQVRDDILDVEASSEQLGKTAGKDQAQDKSTFPALLGMDGAKAQLRELAARMQATLAGYGEEADALRALATLAVERDH
>NZ_CP025298.1|WP_014038018.1|3361354_3361726_-|DUF4870-domain-containing-protein
MSEFDNVPPPPATTEAPADQRTMALAAHLLGIFTWFIGPLIIWLINKDDASKAFVTDQAKEALNFQITITIAMLICIVLTIVIIGGILAPIVGILNLVFCIIAAVKANNGEAYRYPFALRLVK
>NZ_CP025298.1|WP_101765883.1|3361813_3363181_-|metalloprotease-PmbA
MNVIAPEVAVGDDSPARLERLADLSQQLLDRARALGASQAEVSCSEDRGLEVNVRLGEVETVQSTRDRGIAVTVYFGQRKGSASTGDLNEASLTATVEQACAIARHTEDDPAAGLAEAALMATDFPELDGWHPWALQADEAVDLALACEVAGREADAQIRNSDGASVSSMQSLSVYANSHGFFGRERGTHHSVGCALIAGQGDGMQRDGWYTSALAREDLEDVGLVGCRAAERTVARLQPRSLATGSMPVLFAPEVARSLVGHLLSAVSGGALYRQASFLLDSVGQRLFPEWMQIDELPHLRRGLRSAAFDGDGVATRASALVRDGVLQRYVLGSYSARKLGLQTTANAGGVHNLQLAANAGPLEEIARQMGDGLLVTELMGQGVNGVTGDYSRGAGGFRVENGEILYPVDGITIAGNLREMFSSIEAVGSDVDPRSHIRTGSILLGRMTIAGND

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Crispr_ID: NZ_CP025298_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025298_7

3779066-3779142

Unclear

Consensus_repeat	Method
GAAGAGCGTGCCAACCAAGGTTGGCA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP025298_7

>merge|NZ_CP025298|7|3779066-3779142|CRISPRCasFinder
GAAGAGCGTGCCAACCAAGGTTGGCACCTACCGATGGTTTTTCGCGAGTGTCGAAAGCGTGCCAACCAAGGTTGGCA

>NZ_CP025298|7|7|3779066-3779142|CRISPRCasFinder
GAAGAGCGTGCCAACCAAGGTTGGCA	CCTACCGATGGTTTTTCGCGAGTGT
CGAAAGCGTGCCAACCAAGGTTGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025298.1\|WP_049442726.1\|3781118_3782057_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239115
NZ_CP025298.1\|WP_101766015.1\|3776336_3776846_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|367947
NZ_CP025298.1\|WP_101766012.1\|3771694_3772402_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|237939
NZ_CP025298.1\|WP_012481154.1\|3792029_3792947_+\|formate-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|273705
NZ_CP025298.1\|WP_005418955.1\|3785315_3787478_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP025298.1\|WP_101766013.1\|3772420_3773554_-\|pilin-protein	unknown	unknown	gnl\|CDD\|284778
NZ_CP025298.1\|WP_101766016.1\|3777182_3777545_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP025298.1\|WP_053461289.1\|3779213_3780491_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP025298.1\|WP_101766014.1\|3773594_3776285_-\|usher-protein	unknown	unknown	gnl\|CDD\|185210
NZ_CP025298.1\|WP_101766018.1\|3782520_3784632_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP025298.1\|WP_014038334.1\|3787994_3788660_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP025298.1\|WP_101766017.1\|3777887_3778958_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP025298.1\|WP_101766011.1\|3767301_3768045_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_005410875.1\|3784639_3785026_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP025298.1\|WP_010484049.1\|3780787_3781030_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP025298.1\|WP_147416415.1\|3788950_3792019_+\|formate-dehydrogenase-N-subunit-alpha	unknown	unknown	gnl\|CDD\|273689
NZ_CP025298.1\|WP_049442719.1\|3768114_3771636_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240612
NZ_CP025298.1\|WP_012511978.1\|3766312_3766957_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025298.1\|WP_005410877.1\|3787584_3787884_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP025298.1\|WP_101766010.1\|3763633_3766057_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342

Protein	Function_ID	Function_description	E-value
NZ_CP025298.1\|WP_049442726.1\|3781118_3782057_-\|nucleoside-hydrolase	gnl\|CDD\|239115	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR). .	1.08722e-120
NZ_CP025298.1\|WP_101766015.1\|3776336_3776846_-\|fimbrial-protein	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	3.52132e-22
NZ_CP025298.1\|WP_101766012.1\|3771694_3772402_-\|pilus-assembly-protein	gnl\|CDD\|237939	PRK15308, PRK15308, fimbrial protein TcfA.	3.03338e-44
NZ_CP025298.1\|WP_012481154.1\|3792029_3792947_+\|formate-dehydrogenase-subunit-beta	gnl\|CDD\|273705	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing. This model represents the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (TIGR01553) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	1.87421e-156
NZ_CP025298.1\|WP_101766013.1\|3772420_3773554_-\|pilin-protein	gnl\|CDD\|284778	pfam07434, CblD, CblD like pilus biogenesis initiator. This family consists of several minor pilin proteins including CblD from Burkholderia cepacia which is known to CblD be the initiator of pilus biogenesis. The family also contains a variety of Enterobacterial minor pilin proteins.	7.80712e-46
NZ_CP025298.1\|WP_010484049.1\|3780787_3781030_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	5.64613e-50
NZ_CP025298.1\|WP_101766016.1\|3777182_3777545_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	2.97617e-27
NZ_CP025298.1\|WP_101766014.1\|3773594_3776285_-\|usher-protein	gnl\|CDD\|185210	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional.	0
NZ_CP025298.1\|WP_053461289.1\|3779213_3780491_-\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP025298.1\|WP_005418955.1\|3785315_3787478_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP025298.1\|WP_014038334.1\|3787994_3788660_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	1.18318e-120
NZ_CP025298.1\|WP_101766017.1\|3777887_3778958_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000250019
NZ_CP025298.1\|WP_005410875.1\|3784639_3785026_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.07399e-58
NZ_CP025298.1\|WP_147416415.1\|3788950_3792019_+\|formate-dehydrogenase-N-subunit-alpha	gnl\|CDD\|273689	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit. This model describes a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase. In E. coli and Salmonella, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in E. coli which contain selenocysteine. This model is well-defined, with a large, unpopulated trusted/noise gap. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	0
NZ_CP025298.1\|WP_049442719.1\|3768114_3771636_-\|hypothetical-protein	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	3.80185e-14
NZ_CP025298.1\|WP_101766018.1\|3782520_3784632_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP025298.1\|WP_005410877.1\|3787584_3787884_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.39874e-21
NZ_CP025298.1\|WP_101766010.1\|3763633_3766057_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0

>NZ_CP025298.1|WP_101766017.1|3777887_3778958_-|hypothetical-protein
MSTRFDPPERGPLGPDVATVVTAPVVAPPSESAVSWGAIFAGAAAAAALSLILLILGVGLGLSSVSPWSFEGVSKETFGWSSIIWLTFTALAASGLGGYLAGRLRTKWTQIHGDETYFRDTAHGFVSWAVATLLTAGLLTSAIGGVLGTGAKVAGATAGAAVSTAGVAAAGAGSVAAAAPEGDLNYWVDSLFRSATSAGPSDPATPPPPGAPMDPNAAPPPPVASVDPRDARMAAPPRPMPGNGPVADRREVRAEVNRIIVNSLQGDGLDPADTQYLSQLIARETGMSQAEAQARVTEVQTRMRAALEKAKNTAKQAADDARKAAAYAALWLFITLLIGAFFASLSATWGGRRRDL
>NZ_CP025298.1|WP_101766016.1|3777182_3777545_-|NirD/YgiW/YdeI-family-stress-tolerance-protein
MNRLLAIALIATPLALLSPQAFAQYTGPGAGSAASTVADARAQRDDHPVVLRGTLVAKLGHERYQFRDASGQIEVEIDDEDLPPQAIGADTVVELRGKVDTHRFKPTDIDVDHVTVAPAG
>NZ_CP025298.1|WP_101766015.1|3776336_3776846_-|fimbrial-protein
MHATIKKAALAAALATASLSAHAVETKISVYADVDPTLALLRDDGSALPDLITLTHDPMRGLIPDTQRVRIHTNDQDADIEAKIGGAFVLANGDGKVTVPMTVSLNGRDLGLTPIEYAAADLFTGAGSTPGASISMPLVISQTTPAPIATKGAYTGVVNIVLNQKATTP
>NZ_CP025298.1|WP_101766014.1|3773594_3776285_-|usher-protein
MTSHAPAVTRLAVALALALATPLVAARGVPPGFEDLVEGQTEQLDIQLFGRSAGLSPVRVTLDHVQLEDPASVLQSLDLPAEAQAALLPALSQPMPRNSHLACRFGGATAGCGYLDPPEDPAAVRALYDEGEGAVRLFVARQWIPGKPAAERFHTVSANAENAFLHQQVINVSGSRDYQTLSARGTGVLGLFDRGHVSAEWNFNQQRYRSRGSDSAFQFDNVYYRHDLGQAHYLQAGRMDRRNLSSPQGGTFSFSMLPLDRLQGLRVGTTQAYVDSDAAVQATPLTVLLARDARVDAYDGTRLLQTSYLQAGINQIDTRNFPFGNYTITLRIYEDGVLVRSEDAPFDKGGDWTNSQWQWFVQGGKRNERRSDRFDGERVAVAGMRVPLGRDVAMVAGAADLGGFRYGELRVDLRRVYATQELRASFGGMRGNDGSTGQQHQLSYRRTASWNIYQQRMRGKACQFEADARDQLGCTNSLSASMALPLAGGSAYVGYTRRQTWRAGRILPGAEDDPLAGLDPLLPPRPPWQPRREPQLSRTWQASFSRSHRWQDFSVSTRVGVWQQRASDSLRGSDQRDRGIYFNLSLTRLPRGTAGSGQRRYSVDVRQPQHQRPDINYSVGHSLRQDVDAQYRELSAELRANNSDRYSATLSGQLQNSLGQSGATLAHYQQRGRSETAYSGMHSSGFALGKRGFYWSGSNGADAGLAVQVADTDDVDLRGVAAELQVGGLRRQRLQIGERRLLPLSSYQSHRAEVQDASTLDSIAAIRVTGVGGARPMFLSPGRLMRMPVPIEVTYTFIGNAKDLAGAPLGGARILNAPVPGTSANGGFVADFPRRESTLYLLQDDRLLHCPLQVRERRQVVLLVGAVHCEPLAVAQLPAEIRQQARVTRLLQERAR
>NZ_CP025298.1|WP_101766013.1|3772420_3773554_-|pilin-protein
MNRRVLLVLMLVCALVVLAPRAWAQWPPETHPVDQSRDIVMTWDRSAMPGDVELWAPRTVLGFSHDLAMKYGQIHVVCGSASDSEFGKCPVDGEPGVSLGSSNVDLLFVEQRTGLRSELRAQGYLQRVMSDWICAVDYWDTLRRQLNASFWYICSSGQPVGTGVHLELPATELSRLVAGHWKATMRLNIKADPAAAPAATAVFNFDFTVTDYDAISIYFPGFDGVAPLVNMDLRYDPIRKVVAGRKDVDMCLYDGVGSQSEFLGVTVRDSGPRPPPGRDFAVWNQDGGSDDTQRLDYQVGLNYGGNLLAMKHGEEQLLRGIDSAQLRMVLLPGISQPVYCVPTPLTLETPPTPIASQRPGLYEGELTVELRVPTAKP
>NZ_CP025298.1|WP_101766012.1|3771694_3772402_-|pilus-assembly-protein
MKKLLFCLLPLSALLAPPAQANLSIHPMRAAVDAKHGTKIRVYSQSTQPQYVQARLLRISNPAQVGEEEIEVEAADAAIAITPGKFALSGGGNRLIRVIPLQTVEKEAAYRIYFEGVKGPDGTILEGDEQAAQANVGVSLVWGALVNVVPAKGSVDLQLQGNILRNTGTLRVGITGAAECSAGGVCTPLELSRSLYPDAALTLPFQLQPGSTLQLQYRLSNDSYRDHVTTLAPSA
>NZ_CP025298.1|WP_049442719.1|3768114_3771636_-|hypothetical-protein
MNHIYRRIWNHAKQCWVVGSELSSARGKRASGRATAHGLIVLSVIGLVPAGVAASEVQEQVEEREYAKSLGLRNTEAKDIVSVAVPFSSALGTMSVSPLSAQMSSQYLQLAIVSDTNYRDSTISGNHMLVLGSRSSLRGNYSVGYGSAISTSGEYNTAVGYNAVIGNGYSTAIGARAQTSGIGATALGNNALAMQTNSVAIGSGSYASSSNSIAIGANSVADSSYTVSVGNSTTKRKIVNVAAGNTSYGSSDAVTGGQLYETNQAVSSVRNTANSAYSTASTAQTTANSARTNADSALSKANTLGGLLSQTSVSGNVRLGGGNSGAVLDVRNSANANRKITGVADATLSATSTEAVSGKQLNATNSNLTAARSVADSAKVNADSALSKANTLTGLLSQASASGNVRVGASNSGTVLDVRNNANASRKITGVADAVLSATSTEAVSGKQLNATNSNVTTARSVADTAKTNADSALTKANTLSGLLSQTSASGNVRLGEKNSGTVLDVRNSANASRKITGVVDAALSSTSTDAVTGRQLNATNSNVSTALSDASAAKTTANTALTQVGTLNGLLSQGSASGNVRIGEKNSGTVLDVRNSASVNRKLTGVADGVVSASSYEAVNGRQLNATNDKVAMVEGIAKSAGAEAAAAKTDAAKALAETAVLGGLVAQVSASGSVRLGEKNSGTTLDVRNSVNANRKISGVADGLLNASSNEAVSGKQLYSTNSRVLALEGVSQFVSIGVAPSSERADAGPVGVALGNSAKTGSEGGTAVGTHAKSLGRNSVAVGRASTVHEGSENGFALGVGAEVGIAEGGARGGVAIGAGAKVGKGADGSLAIGEGSQANEAGVASFGSATAYRRLVNVARGTADHNATTVSQLKDSLATLGGGAGLDGNGSIIAPTYAVQGGTQNTVEDALMALDGAVITAGRRADKVESQLSSIFQDSPSARADGMSQIALNGVNGMVLTNLADGRVAPGSRDAVNGGQLHSMQQQLNGRMDGLEQRIDDAPPPRALASSSVPKPQAEDTPVVPEGKDSQQVASVGEGDKPTPQPKANKDDSPKPQVDTAELEKMLARANEYTDGAISNFERRLDKMDKRFNRMAAMSSAQTAMAMNTAGLATYNRLGAGVGYSEGESAMAVGYQRVLNEKGSATFSLNGAFTNSGERSMGVGVGIGW
>NZ_CP025298.1|WP_101766011.1|3767301_3768045_-|hypothetical-protein
MYGWVSRFISYRTFYLWRARYFYYTRNLDSWVLFTLLCLTGMVLVLWYHWRVVSVPPPRVHPEVAALRVENITGEAIHRIVLVQHGGTTPGEPFTTPEEVRAGTLRTMRVRELLDSGMVWQLKAHMLADMAAYIEATGSCFPYPCWQLKHRLSLLRAAQTENTAINEALAPVLEVPLDRMPNLNGGERARIQTAWSDTFGDVYNQTWLLADLQDMHARMMVEYPRRAGAPWLARLLTGDAKEPHELR
>NZ_CP025298.1|WP_012511978.1|3766312_3766957_+|hypothetical-protein
MHRARQHAASQTRERRHRLAHEAARLMAEGGIRDYHQAKLKAASRLGIHDDASLPRNTEIEDALREYQRLFSGPQHGNELQRRREAAMRALEFLHGFAPRLAGPVLDGTADANSPVQLHLHSDDPEAVHRFLDEHGIPAESRTRRLRMDRERCLDVPVWVFSAEELTFDLAVLPYDALRQAPLSPVDEKPMRRASVAQLRQVLAEAEITAYIGG
>NZ_CP025298.1|WP_101766010.1|3763633_3766057_+|penicillin-binding-protein-1A
MTRLRRWLRWIFLIVLVLALIGAAAVGGLYYAVSSKLPDVQTLRDVEMQEPMYVYAADGKLMAVFGETRRTPITMKDVPEKLKQAFLATEDARFYEHGGVDYMGIGRAVWLLATTNDKRVPGGSTITQQVARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVAAAAEFYYGKKLNELDLDEMASLAGIPKFPSSGNPISNPERARQRRDNYVLQRMADLKFVSQAEADAAKAVPMHATAHEPPVQVDAPYVAELVRQEMIARFGGDVVNKGYHVTTTIDSTLQTAANQSVRDGLLLYDHRHGWHGVEKQVQLGAGDDTAALAEHLRGMFGQAGLLPAIVASTGADGSATVVLANRTEIVLPAGAAKWTNKTPGKLVQRGDIVRVRAGAKEGEWLLDQIPRGQSALVSLDAHNGALKALVGGFSFSGNKFNRATQARRQPGSSFKPFVYAAAFDKGYNPASIVLDAPVVFRDRRGKTWAPQNDGGGFRGPMRLREALVQSRNLVSVRLLDGMGVDYARKYISEFGFAESELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWLIDQVNDRDGNLVFKENPALACRDCAGSSDQPVNQVVDGFNFGAPAPKVDPAAAAKAEAKTETPAAPVNPDARTAPRAIDARTAYQLVSMMRDVVQRGTGVQAKVLGREDVGGKTGSTNDHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRTALKDTPIAQNDPPSGMVQATLNGATEWVKVEDMDRLTDYDLNLNTPQADAAAFDIF
>NZ_CP025298.1|WP_053461289.1|3779213_3780491_-|citrate-synthase
MSDLDQVTLNAGDKSVVLPVIKPTLGNDCVDIAKLTKETGFFTYDSGFTATASCKSAITYIDGDKGVLLYRGYPIEQLSEKSSYVEVAYLLINGERPSAEQLKAFTDELTAEANVDDSINTLIGSFAKDAHPMAILAAAIAQLSAIYHDSLDLSDAEQRRQAAVRLIAKVPTLSALIYRHGKGLPANKPDTSLDYVSRFLKQTFESADGQYDLNPDVVKALDLLFILHADHEQNASTSTVRLVGSTGANPYASVAAGVTALWGPAHGGANEAVLKMLEEIGTADNVESAVVKAKDKTSGFRLMGFGHRVYKNFDPRAKVIGEMTSKVLKQLGVQDPLLDVAVKLEQAALQDEYFVARKLYPNVDFYSGIIYKALQIPTEMFTVMFALGRTSGWVSHWLEQQVDPEMKIGRPRQVYTGSDVRDYQG
>NZ_CP025298.1|WP_010484049.1|3780787_3781030_-|type-B-50S-ribosomal-protein-L31
MKADIHPNYRDVVFHDVTSDFKILTRSTMATKETIKWEDGNDYPLVKVEISSASHPFYTGKHKVIDTSGRIDKFQKRYAR
>NZ_CP025298.1|WP_049442726.1|3781118_3782057_-|nucleoside-hydrolase
MTHKIPLLIDTDPGVDDALALLMAFADERHDVVALTIAAGNVGLQYTVRNALKLCDIVGRADVPVFAGSPDPLLHPSVDAAHVHGRDGYGDVDLPPPSRQAEAEHAALAILRLSHEHAGELMLVMLGPLTNLALALKLDPTLPQRIKRIVVMGGAVTCHGNITPAAEFNIAFDPEAAHVVFTSFKHLLVSDWEATVAHGLPLEEAEKWLQADSDRARFYELISRKTRGLSEDSKGGRWYTADAVAMAWALNPEGQLQVESRPLNVELNGTFSRGATIVDWNRQTGQPDNCDLLMAYDQQRFEALVRQALGAD
>NZ_CP025298.1|WP_101766018.1|3782520_3784632_-|ATP-dependent-DNA-helicase-RecG
MARKAAVTPVLSPSGEASLAMLAGVGPAVAAKLQARGLATLQDLWLHLPLRYEDRTRLTRIEDLRNGVPAQVEGRVVAVERGMRYRPMLKVAMEDEGQGTLVLRFFHFRQQQVGQFAVGNRLRCFGTPKPGHLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPMTMRKLIGQALDRLPEESTLELLPSGWLDGLGLPSLRSALLTVHRPPPDADLAALAAGTHPAQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLARALLKQLPFALTGAQARVFKQIREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEPLGVRIAWLAGKVTGKARAKVMEQVANGEAQVVVGTHALMQEAVVFQDLALAIVDEQHRFGVHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQTVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAAEKLATMVAFKAGEIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQTGLAGFRIADLARDAGLLPGVHDLAERLLDQQPALADRVVQRWIGTAVRYASA
>NZ_CP025298.1|WP_005410875.1|3784639_3785026_-|RidA-family-protein
MSRQIINTEKAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGDIVGAGDVEAQARRAFDNLKAVAEAAGGSLDKVVRLGLYLTDLGEFAKVNAVMQDYFQAPYPARSTIEVSGLPKGANFEVDAVMVID
>NZ_CP025298.1|WP_005418955.1|3785315_3787478_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MNPGPTAKVAAAPTAAVPDYVLQLERAAHYLPPEQLPLLRRAWEVGASAHAGQTRKSGEPYITHPVAVAQVLAELGLDVEALIAAILHDTIEDTPLTREALAAEFGEAVAELVDGVTKLDKLKFRDRQEAAAESFRKMLLAMSRDLRVIMIKLADRLHNMRTLGAQSREARGRIARETLEIYAPIAQRLGMSLVKSELQNLGFKALYPWRHAIIEKHIRSQPVVRREAMAQVEVQLSQRLAKEGIEHRLISRIKTPWSIYNKMRDENKSFDQVMDVFGFRLVVRSVPSCYHALGSVHATFKPLDGRFRDFIAIPKANGYQSLHTVLFGPYGSPIEVQIRTEEMDLIAERGVAAHWTYKFGGDSPNSAQSRAHAWIVELIDSQRAAGSSLEFLDNVKVDLFPDEVYLFTPKGKILALPRNSTALDFAYAVHTDVGNMAVASRVDKKLVPLRTKLVSGQSVEIITARSATPKPQWLEFVVTSKARTAIRHQLKQLEHEDAVQLGHRMLDRALEAMDSSLERLPKGRLDAFLAEHRFPRLEALLAEVALGNWMPTQAAQALMAYAELRGGPHSRHHSQEKILINGSERGVVTFAGCCQPIPGDEIMGYHTAGKGIVVHRMDCPNLAELRKSPERWVPIGWDTTVSGDYDTSLVVEVENGTGVLAQLAAAIAQSHSNIERVDYLDRDFNAAVLAFNIQVRDRNHLAEVMRRLRRLSVVQSVRRQ
>NZ_CP025298.1|WP_005410877.1|3787584_3787884_-|DNA-directed-RNA-polymerase-subunit-omega
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQATLDNSETEDKPTVLALREIAARKIDNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
>NZ_CP025298.1|WP_014038334.1|3787994_3788660_-|guanylate-kinase
MSAPSKPSDAVARGTLYIVAAPSGAGKSSIVNATLARDPQIALSISFTSRAMRPGEVNGQHYHFVSAEKFEEMIAAGDFFEHAWVHGDWKGTARQSVEPQLAAGQDVLLEIDWQGAQQVRQLVPGTVTVFILPPSKQALQDRMRKRGQDSEAVIAQRLGAARDEMLHFNEFDYVIVNEVFDTAVDELCAIFTASRLRREAQKVRHAGLIQALLTPDPGATD
>NZ_CP025298.1|WP_147416415.1|3788950_3792019_+|formate-dehydrogenase-N-subunit-alpha
MPSMSRRQFLKVTGTTLVGSSLALMGFAPGIALAEVRQYKLTRATETRNTCTYCSVACGILMYSLGDGAKNAEPSIFHIEGDPDHPVNRGTLCPKGAGLADIIHSKSRLLYPEYRAPGSNEWKRLSWDDALDRIARLMKEDRDANFVQKNEAGQTVNRWLTTGMLAASATSNETAVLTHKVVRSLGMLAFDNQARVUHGPTVAGLAPTLGRGAMTNHWVDIKNADLILIMGGNAAEAHPCGFKWVTEAKAHNKARLIVVDPRFNRSAAVADVYAPIRTGTDIVFLGGLINYLLTEDRIQHEYVLNYTDMSFLVKDEFAFKDGLYSGYNEEKRSYDRSSWDYAYGDDGFVRSDPTLKDPRCVYNLLKQHYARYTVEMVERICGTPANSIRQVWEMIASTAGKDKAMTILYALGWTQHSIGAQNVRAGTMVQLLLGNIGVAGGGMNALRGHSNIQGLTDIGLMSDLLPGYLTLPKQDEQDYDAYIAKRTQKPLRANQMSFWQNYPKFHVSLMKSWWGDAATADNNWCFDHLPKLDKPYDMLQAYELMNEGKIHGYICQGFNPLASAPNKGKLISAFSKLKFMVSMDPLETETIAFWQNHGALNDVDPSTIQTEVFRLPTTSFAEENGAVVNSSRWLQWHWKGANPPGEARSDIEIMSELFHRIKAMYEKDGGAWWEPVRDLAWKYSNPELPTPEELAMEYNGKALADVFDPKDPTKLVRKAGEQLAAFGDLRDDGSTSSGCWIYIGAWGPTGNMMARRDNSDPTGIGNTLGWAWAWPANRRVMYNRASCDVAGQPFDPRRTLLAWNGKNWGSVDVPDFKADEDPAGGMGPFIMNPEGIARFFAKAGMAEGPFPEHYEPFDTPLRSNPLSPGQALTLNNPAARVFASDRAQIGSPDEFPHVATTYRLTEHFHFWTKHGKLNAIIQPEQFVEIGAALADELGINNGSRVRVSSKRGHIEAVAMVTKRIKALQIDGRTVHQVGVPIHWGFLGAAKPGYIANTLTNAIGDGNSQTPESKCILVKVEKV
>NZ_CP025298.1|WP_012481154.1|3792029_3792947_+|formate-dehydrogenase-subunit-beta
MSLQSLDIIRRSATTTPSPEARGAHTGQVAKLIDVSKCIGCKACQVACMEWNDLRDEVGSCVGSYDNPPDLSEQSWTVMKFREYEDEKGKLEWLIRKEGCMHCSDPGCLKACPSPGAIIQYANGIVDFQEENCIGCGYCVTGCPFDVPRISKKDHKAYKCTLCSDRVAVGQEPACVKTCPTGAITFGSKQAMTEHAAGRVEDLKSRGYENAGLYDPQGVGGTHVMYVLQHVDKPELYADLPKDPRISPMVEVWKGVAKPLGVLAIAATAFAGFLHYIGIGRNTVNDEEEEEAEHEAKKIEEEQRP

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Crispr_ID: NZ_CP025298_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025298_8

3914455-3914537

Orphan

Consensus_repeat	Method
GGTTGGCACCTACCATGAGCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025298_8

>merge|NZ_CP025298|8|3914455-3914537|CRISPRCasFinder
GGTTGGCACCTACCATGAGCAGGCAAAGGCAGGCTTCGGACACATTCGTGCCAACCAAGGTTGGCACCTACCATGAGCGGGCA

>NZ_CP025298|8|8|3914455-3914537|CRISPRCasFinder
GGTTGGCACCTACCATGAGCAGGCA	AAGGCAGGCTTCGGACACATTCGTGCCAACCAA
GGTTGGCACCTACCATGAGCGGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025298.1\|WP_101766052.1\|3917129_3917747_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238870
NZ_CP025298.1\|WP_049442935.1\|3902816_3903467_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP025298.1\|WP_101766054.1\|3921873_3923283_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|238634
NZ_CP025298.1\|WP_005419193.1\|3909431_3910172_+\|acetoacetyl-CoA-reductase	unknown	unknown	gnl\|CDD\|171822
NZ_CP025298.1\|WP_049442892.1\|3920355_3920895_-\|DUF924-family-protein	unknown	unknown	gnl\|CDD\|226325
NZ_CP025298.1\|WP_005414446.1\|3920938_3921715_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|235940
NZ_CP025298.1\|WP_101766047.1\|3899614_3902257_+\|response-regulator	unknown	unknown	gnl\|CDD\|226654
NZ_CP025298.1\|WP_014038433.1\|3905931_3906621_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|185376
NZ_CP025298.1\|WP_049442897.1\|3914627_3915737_-\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234988
NZ_CP025298.1\|WP_101766050.1\|3906863_3908003_+\|porin	unknown	unknown	gnl\|CDD\|226269
NZ_CP025298.1\|WP_012481220.1\|3908078_3909407_+\|CitMHS-family-transporter	unknown	unknown	gnl\|CDD\|225407
NZ_CP025298.1\|WP_101766053.1\|3917751_3918471_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP025298.1\|WP_049442898.1\|3913136_3914390_-\|flavohemoglobin-expression-modulating-QEGLA-motif-protein	unknown	unknown	gnl\|CDD\|369651
NZ_CP025298.1\|WP_101766051.1\|3910400_3912698_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP025298.1\|WP_101766049.1\|3904547_3905939_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP025298.1\|WP_042358958.1\|3919354_3920281_+\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|188046
NZ_CP025298.1\|WP_049442896.1\|3915851_3917126_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738
NZ_CP025298.1\|WP_049442893.1\|3918515_3919295_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP025298.1\|WP_101766055.1\|3923282_3924545_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238634
NZ_CP025298.1\|WP_101766048.1\|3903495_3904551_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224753

Protein	Function_ID	Function_description	E-value
NZ_CP025298.1\|WP_101766052.1\|3917129_3917747_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238870	cd01832, SGNH_hydrolase_like_1, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.	2.88334e-35
NZ_CP025298.1\|WP_049442935.1\|3902816_3903467_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	8.32434e-62
NZ_CP025298.1\|WP_101766054.1\|3921873_3923283_+\|amidohydrolase	gnl\|CDD\|238634	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	6.11313e-150
NZ_CP025298.1\|WP_005419193.1\|3909431_3910172_+\|acetoacetyl-CoA-reductase	gnl\|CDD\|171822	PRK12938, PRK12938, 3-ketoacyl-ACP reductase.	9.2631e-127
NZ_CP025298.1\|WP_049442892.1\|3920355_3920895_-\|DUF924-family-protein	gnl\|CDD\|226325	COG3803, COG3803, Uncharacterized protein conserved in bacteria [Function unknown].	9.84106e-80
NZ_CP025298.1\|WP_005414446.1\|3920938_3921715_-\|AMP-nucleosidase	gnl\|CDD\|235940	PRK07115, PRK07115, AMP nucleosidase; Provisional.	0
NZ_CP025298.1\|WP_101766047.1\|3899614_3902257_+\|response-regulator	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.47749e-81
NZ_CP025298.1\|WP_014038433.1\|3905931_3906621_-\|response-regulator-transcription-factor	gnl\|CDD\|185376	PRK15479, PRK15479, transcriptional regulator TctD.	4.3767e-73
NZ_CP025298.1\|WP_049442897.1\|3914627_3915737_-\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234988	PRK01889, PRK01889, GTPase RsgA; Reviewed.	0
NZ_CP025298.1\|WP_101766050.1\|3906863_3908003_+\|porin	gnl\|CDD\|226269	COG3746, OprP, Phosphate-selective porin [Inorganic ion transport and metabolism].	1.82954e-101
NZ_CP025298.1\|WP_012481220.1\|3908078_3909407_+\|CitMHS-family-transporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	0
NZ_CP025298.1\|WP_101766053.1\|3917751_3918471_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.45975e-10
NZ_CP025298.1\|WP_049442898.1\|3913136_3914390_-\|flavohemoglobin-expression-modulating-QEGLA-motif-protein	gnl\|CDD\|369651	pfam08014, DUF1704, Domain of unknown function (DUF1704). This family contains many hypothetical proteins.	2.62357e-144
NZ_CP025298.1\|WP_101766051.1\|3910400_3912698_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.94331e-47
NZ_CP025298.1\|WP_101766049.1\|3904547_3905939_-\|sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	6.31229e-52
NZ_CP025298.1\|WP_042358958.1\|3919354_3920281_+\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|188046	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. [Energy metabolism, Electron transport].	1.40805e-55
NZ_CP025298.1\|WP_049442896.1\|3915851_3917126_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NZ_CP025298.1\|WP_049442893.1\|3918515_3919295_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	1.24735e-55
NZ_CP025298.1\|WP_101766055.1\|3923282_3924545_+\|amidohydrolase-family-protein	gnl\|CDD\|238634	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	6.86019e-53
NZ_CP025298.1\|WP_101766048.1\|3903495_3904551_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|224753	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism].	6.49288e-36

>NZ_CP025298.1|WP_049442898.1|3913136_3914390_-|flavohemoglobin-expression-modulating-QEGLA-motif-protein
MEPTATLDREVAHHAALDARLVEAVGGIRLLGLTSWPATLQAPFLDSVARGQPVLPKVDYPRLDFSEERRALAAIAADCDDSHPLGHYVRQSAQSWDLAAQLLEGLGTAAVDTCSVQLFGAPEQPLPGNGPSTREAARHFIQIAAELDHELLAPEEQVPVSAIALQLQLQNDLDAFFESRIIQVQLDPELVSKAAAGPTRIRLRTSARFSAYDRAQLFHHEALVHSLTALNGREQPVLPSLALSSPRVTATQEGLATFAEQITGSIDIERLKRISLRTEAIAMAREGADFIEVFRYFCDAGQNTEESFASAQRVFRGVPPSGGLAFTKDTVYLRGLVSVHTFFRHMLAEDRLQVCRWLFAGKMSLTDAIAFAPLFEAGVLKPPRWLPHWVSRANGLAGMLAFSLFANRIRMDQLAPE
>NZ_CP025298.1|WP_101766051.1|3910400_3912698_+|TonB-dependent-receptor
MQTRHLTIAVAIALSAAASAHAANAADTGASTEAALSAQTLDTVSVIGQGETRQVQRITAVDKQVLPPGTSGQKILDRLPGVSVQSNDAFGANEESQTISLRGFDKSRLGYTLDGIPLGDNSYGNYNGLSIARAIIAENLAGAELSQGIGSLGVASTSNLGGTIQYFSMDPSTEFGGRASVTVGDNNQRRGYLRVDTGDINGFSAYVSGVHQDQDMWAAPYQNQTTRQFNAKAVWNVGDHRFGAFVATSRASQANYAYLSKDMLARGLGYDWNIYAPDWDRAVAAAYCAPGTYNKARCAFSGGVNSIDDAYYQSRALRDDNLYSVDADLRLGEQGRLKLLAYHHDNRGQGHWWAPGQPSYPGTDKMLPISIRSTNYTINRDGLTAALSWTVGIHELEAGLWYEQNDHNVSRNFYYISGPFLDDLYLKNPDRLLFNQDFDIRTRQFYVQDRMRFLDQRLTVDVGIKSPNTRMRATAKPGVETSIASGTLTAKESVLPQVGVGFKLNANNELFASYAENIAAFVGGGSGGPLQVSPESFAASAGLEPEKSKSLEAGFRTFGEKYQASIAAYNVKFDNRLLSLNPCSSIEVGTRPECVTRFINVGSVKSYGAELTFIFKPIDGLQWYNALSWNKTTYEDDYTSGGAIVPVAGKITVDTPQRMASSEISWNRDGFFASLRAKYTGKRYYTYTNDQSVPGVTTFDAGAGYDFGPGLGLRNVRVSLNATNLTNKRYAGQLSSFAPTDPKGTRYAIHASAPRQLFMTVAAEF
>NZ_CP025298.1|WP_005419193.1|3909431_3910172_+|acetoacetyl-CoA-reductase
MTLRIAYVTSGMGSVGTAICQSLARSGHTVVAGCAPNSPRKANWLREQREQGFDFIASEGNATDWASTSAAFAKVRAEVGEVDVLVNNSGGSRDLLFRQMTVEDWNAVIASNLNALFNLTKQVVDGMATRGWGRIINIGSVSAHKGQIGQVNYATAKAAMHGFSRALAAEVASRGVTVNTLSPGYIASQAISSFPPDVLDRLAASVPVRRLGRPEEVAGLCAWLASDEASYVTGADYPVNGGLYMG
>NZ_CP025298.1|WP_012481220.1|3908078_3909407_+|CitMHS-family-transporter
MLSILGFGMVITFMYLIMSKRLSPLVALITIPILFALIGGFGAGIDEMMLEGIKKIAPTGVMLMFAILYFGVMIDAGLFDPLVRVILRFVKGDPMKIVLGTAVLAMLISLDGDGSTTYMITVSAMLPLYQRLGMNALNMTCVTILAGGVMNLTPWGGPTARAATALHVDPADVFVPLIPSMVIACAGVLLLAWYLGLKERRRLGVVTLPKGGSWMDNSVSDDSNPLPTVEDAEDIKRPKLLWVNLALTVALMTALIIGVLPMPVLFMVGFAIALVINYPNLAEQRRRVVNHAGNVLSVVSLIFAAGIFTGILNNTGMVEAMSHSFLAVIPESWGPYLAVITAVASMPFTFFMSNDAFYFGVLPILSEAAGNYGITPVEMARASLAGQPVHLLSPLVPSTYLLVGLAKVEFADHQKFTLKWAIAISMLLMVGSLLFGLYPLAA
>NZ_CP025298.1|WP_101766050.1|3906863_3908003_+|porin
MMALAALSAPAFAAEDDRPVTATLGGRLHLDFATFDNDNRGTPNKDDTEIRRAWVDVSGKFFVVDYKLEADFSGDRVEAKDVYLARSFGKAGKLTVGQFKQYFSLDDRTSSNYGSFLERGNAGTTLAPLYRLGASWQANPGDFTWAASLYSLESIDAWQVKGRAAGGRVTWAPSPSEGDVLHLGLSLAREAYDNPGANGTPGLSIRPRPAGHLSDESRLTLVNFSAGRDTDVNKWSLEYAQVRGPLSWQGEFSGATFDDGAQRGDVMAAYGMLSWFVTGESRAYDRKTGRFARVKDIRHKAGAFEVALRYDQMWGAQHLDGAPDLRRGSTEAWTLGGNWYLRDNLRFMLNVIESRNRDRLAGVTVDRTRAVTGRLQYDF
>NZ_CP025298.1|WP_014038433.1|3905931_3906621_-|response-regulator-transcription-factor
MRLLLVEDNPDLADAIIRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGLRVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRARGQASEVVQIGGFQFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFGFDDEAGPNAIELYVGRLRKKLAGAPLRITTVRGVGYLLEASDASADADG
>NZ_CP025298.1|WP_101766049.1|3904547_3905939_-|sensor-histidine-kinase
MADMRAATAAPGSLRRTLLLYLGVLLAVFAVALLFAARDYGQRAANRSYDHLLVSSALSIADSVALVDGQWQVDLPYAALDLLAMAPEDRVFYRVADNRGNLITGYGDLPAPPRRPGTQPQLFDAPYSGETVRFVVVGRSFAAASAQGEVQVQVGQTRRAREAVAQDMVNRALLAIGVLSGLLLALVAFGVHRAFRPLVRVERELSRREPSDLKPLDARVPREMDQMVAALNRFMERLSSSNETLRAFMAEAAHQMRTPLAALRAQAQLALDDDDPEDMRRSLQAIERNATHMSRLLNQLLSDASVIHRSHLQRFAAVDLAETVHQALHEALPQAAPAPRVQLAMTAEPVQVHGDALLLREAIKNLVDNALKYGGEGPLQIALTVEGGQAVLTIADHGAGIAAADAERVFERFARGEGAPSGGAGLGLAIVKRVVDSHGGRIDLSNRPQGGLIATIRLPRSSS
>NZ_CP025298.1|WP_101766048.1|3903495_3904551_-|ABC-transporter-substrate-binding-protein
MIRLFATAVALLLALPVLAAPGDVRRFPAQGAATAQLRIHGTTDIEVFAVVIADYQRLHPGTEVVYEDIITQDLYARYLHDRVGPASPDLLISSGMDLQTKLVNDGHALPHRSAQTAALPAWAQWRNEAFGISYEPVVMVYNTRALPSAKVPHTRRQLLDRLRAEGAPLRGKVGTYDIERSSVGYLLATQDAQRGSIAGALLGALGDNDVVREERTGVLLDKVASGQLSLVYNVLGSYAQARVDAGAPLAIVEPEDYTLVVLRTALIPRTGPHPEEARRFLDYLLSPRGQQVLSREARLMPIVTGNARGDDAPGRSRRPIQLGPGLLVYLDALKRRQFLDAWRSSVEPAGR
>NZ_CP025298.1|WP_049442935.1|3902816_3903467_-|response-regulator-transcription-factor
MSEYTILIADDHPLLRSAVVQSLRQSLPLAQVREVASAEALAEALDAQPDVDLVLLDLTMPGAHGFSALLHVRGSHPDIPVVILSSNDHPRVIRRAQQFGAAGFIPKSAPAETIGEAVQTVLDGGLWFPAMAAERSEADALLASRLAQLTPQQFRVLLCLADGLLNKQIAYTLGLAENTVKVHVTAILKKLECHSRTQAAVLVKALEPEGDAGIGL
>NZ_CP025298.1|WP_101766047.1|3899614_3902257_+|response-regulator
MYWLSRHRMLLLTILVMVGGTVLCAVAAGHYAWRRALGEESSQVQRQLQLYGQGLQQRIDRFGTLPQVLALDPDLLHALRVPPSPTERQRLNLKLQRANEVTRASTLTLVGHDGVAVAASNWDQPTTNVGENYSYRPYYRQALAQGRGRFYGIGMTTGVPGYYLSQAIEEDGKRLGVVVIKVELSALEQEWLSSPDVVLASDDHDVVFLANRDSWRYRLLRPLGADERREMLDARQYADRTLQPLRARTEDVLADGGRMVRLLDPALPQPMLWQSLPLPAEGWNLHLLHDASAATAAGRAAALTGGAAWLALGFLVLFVQQRRRLAKHRLRSRRELETLLKQHAQELRTAQDGLLQAATDADSGLSRSLEHLPQGVVVIDRELRLVAWNSRYLELFRFPLDLVRVGRPIEDLFRFNARRGLLGPGPVDEAIERRLNHLRSGRPHMRESEKDDGTVLEIRGNPLPDGGFVTSYADITSYKNAARELRSLADALEHRIAERTHDLDEARREAEQANRYKTRFVASAVHDLLQPLNAARMFVSVLRGKLSDPAQQQTSDHIDAALAAQDAILNSLLDIARLESGSLPTRVQAFRLGPLLQTLAREFGIAAHSRGLVVDWIDTDAVVVSDEALLRRILQNFLSNALRYSERGRVLLGCRRREGMLWIEVHDQGPGIPDALQSEIFEEFRRLHDGQQRGAGLGLAIVDRIGRLLGHPIRLRSQLGHGSVFAVGVPFGEASAIPASAPAPVLVQEPAADNPLRGRRVWVIDDDPHVCAASRALLERWGCEVMLADGPQAALQLASTTTVPELVLLDVRMGDHHGPVLYETLAELWQARPPVVLVTAERDAGLREMAAERGWGMMAKPVKPPALRALMSQLLVRHRG
>NZ_CP025298.1|WP_049442897.1|3914627_3915737_-|ribosome-small-subunit-dependent-GTPase-A
MAAMTQTPDFIALQTIGWPWPGPAQQADWQAVMAAHPQARPARVIEQHRTHYVVADGPDAAIKAESLPEWQRPRFPSHERPAVGDWVLLDGIRIVALLPRRTAIKRGAAGEHYHQQVIAANIDTVFIVCGLDADFNPRRIERYLLLVGGGGAEPVVVLTKADQTEYSEDALAVLEELEMQGIALHAINGLDADSVAVLQPWLGPGRTVVLVGSSGAGKSTLTNTLLGEQRMKTNAVRANDSRGRHTTTHRALMPLPTGACLIDTPGMRELKPTGEETLSEGGFADIEALAAQCRFNDCKHQQEPGCAVRAAIEAGEIEESRLLNYFKLKEEVAAAAAKLAVRQAETAQERGGKKGKGQQFRPAGKPRRR
>NZ_CP025298.1|WP_049442896.1|3915851_3917126_+|pyridoxal-phosphate-dependent-aminotransferase
MSTLSPKPLAIRERLSEVRYEIRGELARRARELEAQGRKLIKLNIGNPGNFGFRAPEHLQRAIADDMGRTDPYTHQQGLPVAREAIAAYYARRGAPDAHPDRVFVGNGVSELIDLSLRALLNPGDEVLVPSPDYPLWSASTILNDGRPVYYRCAAENGFQPDPSEIETLVSSRTRAIVLINPNNPSGASYPRELLERVVEIARRHNLLLLVDEIYDQILYDDAVFQPVAPLAGDHPCLTFSGLSKVHRACGWRVGWAHLSGDDARLGDFRAALDLLGALRLCANVPGQYAIEAAVNGPDTISELCTPGGRLYETRRAVIEACEASEHLSLVAPAGALYAFPAVVGAAAKGFDDHDFALDLMNNEGVLVVPGSSFNVPYRHHFRVTLLPEASVMRDVFARIDRVLARRAEDATKVVPLKPRRSVA
>NZ_CP025298.1|WP_101766052.1|3917129_3917747_+|SGNH/GDSL-hydrolase-family-protein
MALTYLALGDSYTIGEAIAVEGRWPHQLAAALRAQDVALANPQTIATTGWTTDELDAAIDAAAPQGPFDFVSLLIGVNNQYRGRPLDEYRVQFEALLRRAIGFAGGRPGRVLVLSFPDWGATPFGTGSGRDLATIEIETDEFNAAAEVISTQQGVAFVDITDISRDHGDDPAMIAEDGLHPSARMYALWSARALPVAAHLLGGTD
>NZ_CP025298.1|WP_101766053.1|3917751_3918471_+|class-I-SAM-dependent-methyltransferase
MDGTPRNGPPLPCTPLSAAQARAIAEAFRPVQAWGSRRDYYYTRGKLGSDPLYDGVLQHLPDDGHPLLDLGCGLGLFAHVLRQRGRTQRYLGVDVDAGKITRAQRAATGLHDVRFDCLDVQAPLPAQVGHVLLLDVLQYLDAGPQQALLRAASARVAPGGRLLLRTPLATGDGRDRTTRVADRLAWLVGWMGTRPRHYPDPQVLQATLIEAGLQVTAPRPLHGRTPFNSWLLVAERLVL
>NZ_CP025298.1|WP_049442893.1|3918515_3919295_-|polysaccharide-deacetylase-family-protein
MSNAGTLHRIPTRPWRWLPWLVASQLAVILAWALAGWHWGLPLMVASHALFMVPVFLPNSRFYAPVLSRMPEAGDSVWLTIDDGPGPETRAVLDLLDRHQARATFFLVGERALAQPELVQEILRRGHDLGNHSHSHPQARFWRLGPAAMRAEIEGCQHALQAVSGRPVRWYRSVVGMTNPFVAPVLQRLGLVRVGWSARGFDGIGCTAQGVLDRLLPDLRPGAIVLLHEGAAHGHNLAIIERVLQALDERGLKAQLPAL
>NZ_CP025298.1|WP_042358958.1|3919354_3920281_+|Grx4-family-monothiol-glutaredoxin
MSLDPALRSRIESILNANRVVLFMKGQPSMPQCGFSAKAVGALQDLGVEFAHVNVLADQEIREGIKAYGDWPTIPQLYIDGELVGGSDIVLQMAASGELSSVLGLAAPDRTPPSITVTPAAVEMLKGALADAPGAALQLSIDAGFQPNFQLAPHDEGAIAAESNGLRVQFDLASARRANGITIDWVDDIRGKGLAIDNPNAPKPVQEISVRDADDLVRAGNITLVDVRPADEREIAAVGVPFKTFDGTGRAALEALPKDTALAFMCHHGGRSAQAAEQFRALGFTKVFNVTGGINAWSEDVDNGVPKY
>NZ_CP025298.1|WP_049442892.1|3920355_3920895_-|DUF924-family-protein
MDVAAQVVEFWKEAGPAKWFARDDAFDAQFRQLFLDEHFAAASRAREHWLASAEGALALMLLLDQFPRNCFRGSAHSYATDGLARHYAMRAIEEGLDLQLVPKLRAFIYLPFEHSEDPLDQDRSVAMFDVLGDKEYLQYAELHRDIIRRFGRFPHRNAVLGRIPSPEELDYLAEGGFAG
>NZ_CP025298.1|WP_005414446.1|3920938_3921715_-|AMP-nucleosidase
MKSKQEIVDNWLPRYTGVPLDQFGQHILLTNFGGYLHTFSELTGAPVIGLDRPMASATIDGITMINFGMGSPNAAIIMDLLSAVMPKAVLFLGKCGGLKRKNQLGDLVLPIAAIRGEGTSGDYLPPEVPALPAFALQRAVSTMIRDLGHDYWTGTVYTTNRRVWEHDEAFKERLRAMRCMAIDMETATVFAAGFANHIPSGALLLVSDQPMIPDGVKTEASDAKVSSQFVENHIQIGIEALKLIRRNGKSVRHLRFDE
>NZ_CP025298.1|WP_101766054.1|3921873_3923283_+|amidohydrolase
MASTLLRAGVTLALLSLSTAPAVGASRFVADPYPSTYQAHPDAPVLIQNATVLTGTGQRLDNADVLLREGRIVAVGRQLQADAGVTRIDAQGKWVTPGLIDVHSHLGVYPSPGVGAHSDGNEMTAPVTANVWAEHSVWPQDPGFATALAGGVTSMQVLPGSANLVGGRGVPLKNVPAITYQAMKFPGAPWGLKMACGENPKRVYGEGKGVAPATRMGNVAGYRAAFIDAADYIAKNKPKPAKRTGWFGSDKGDSAGDAGGKRDLKLDTLAGAIEGDIRVHIHCYRADEMATMLDLAKEFGFKVAAFHHGVEAYKLADRLAADGVCGALWADWWGFKMEAFDGIPENIALVDRPKNSCAIVHSDSPEGIQRLNQEAAKVIAAARRAHMPEISPEHAITWMTANAAKALGIEGQTGTLEAGKMADVVVWNGNPFSSYALAEQVFIDGRKLYDRRAPAATPRSDFQLGQEVH
>NZ_CP025298.1|WP_101766055.1|3923282_3924545_+|amidohydrolase-family-protein
MGALNKRRRAWLGATLMVLACISASAQAQDLLVRNATVHTAGARGSLQHTDVLVQGGIIRAVGSGLSAPAGASVVEADGRPLTPALFGGITEIGIEEVSGEASTVDSTLKIGEQPLRPEFDVTLAYNPASVLIPVARLDGIGFTALGAATGGGFVAGQGGVMRLDGSADPLGPRALFLRLGSAAVELTGHSRAAQWMLLQQMVDEARGQVAADSPHALLTPAGRRTLSRYLAGQGRIVVEVDRAADIRQLLRWAAREKVKIAIAGGSEAWQLAPELAAAQVPVFVDVLSNLPASFDQIGATLENAARLQRSGVAVSFVQRGDASHNARKMRQLAGNAVANGLPWADGLAGLTRVPAQAFGVGDQIGSIEPGKRADLVLWEGDPLDVAHYAEQVWLGGRAMPMRSRQTELRDRYLLRNAQP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

290826 : 301983

Siphoviridae_environmental_samples(37.5%)

tail,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069138078.1\|290826_291339_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_101764745.1\|291335_291686_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_101764746.1\|291709_292066_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_101764747.1\|292137_292797_+\|tail	phage tail protein	C4ML12	Xanthomonas_virus	9.2e-61	56.2
WP_101764748.1\|292796_293105_+	hypothetical protein	NA	NA	NA	NA
WP_014035628.1\|293155_293413_+	DUF1799 domain-containing protein	A0A2H4JBP7	uncultured_Caudovirales_phage	1.6e-05	32.9
WP_101764749.1\|293524_294847_+\|tail	phage tail protein	K7PM62	Enterobacteria_phage	6.4e-21	32.0
WP_014035630.1\|294846_295176_+\|tail	phage tail protein	C7BGC9	Burkholderia_phage	1.6e-21	52.7
WP_101764750.1\|295187_296405_+	hypothetical protein	NA	NA	NA	NA
WP_101764751.1\|296401_297097_+\|tail	phage minor tail protein L	A0A2R3UA90	Siphoviridae_environmental_samples	9.6e-93	67.1
WP_101764752.1\|297159_297900_+	C40 family peptidase	A0A2R3UAR4	Siphoviridae_environmental_samples	1.3e-79	58.5
WP_101764753.1\|297892_298498_+\|tail	tail assembly protein	W0LI27	Edwardsiella_phage	8.2e-48	52.0
WP_101764754.1\|298494_301983_+	host specificity protein J	A0A2R3UA88	Siphoviridae_environmental_samples	0.0e+00	58.7

DBSCAN-SWA_2

2308026 : 2317362

Stenotrophomonas_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101765446.1\|2308026_2308413_-	hypothetical protein	S0F2J2	Stenotrophomonas_phage	5.4e-61	98.4
WP_101765447.1\|2308558_2308843_+	hypothetical protein	S0F3S0	Stenotrophomonas_phage	4.3e-15	67.6
WP_101765448.1\|2308832_2309039_+	hypothetical protein	NA	NA	NA	NA
WP_101765449.1\|2309028_2310084_+	phage replication protein	S0F3F7	Stenotrophomonas_phage	8.3e-205	98.3
WP_101765450.1\|2310065_2310344_+	hypothetical protein	S0F2M9	Stenotrophomonas_phage	2.3e-45	98.9
WP_101765451.1\|2310347_2310551_+	hypothetical protein	S0F2M5	Stenotrophomonas_phage	2.8e-29	95.5
WP_101765452.1\|2310559_2310793_+	methyltransferase	A0A1W6DXZ2	Xanthomonas_phage	1.7e-14	64.9
WP_101765453.1\|2310891_2312328_+	hypothetical protein	S0F309	Stenotrophomonas_phage	2.5e-135	61.1
WP_049405310.1\|2312330_2312642_+	DUF2523 domain-containing protein	S0F3R9	Stenotrophomonas_phage	1.0e-46	91.2
WP_101765454.1\|2312643_2313846_+	hypothetical protein	S0F3F8	Stenotrophomonas_phage	6.1e-196	83.5
WP_101765455.1\|2313842_2314469_+	conjugal transfer protein	S0F2N7	Stenotrophomonas_phage	2.8e-83	80.2
WP_158297994.1\|2314562_2314949_-	hypothetical protein	NA	NA	NA	NA
WP_101765456.1\|2315016_2315355_-	hypothetical protein	S0F2N2	Stenotrophomonas_phage	1.4e-52	93.8
WP_032966761.1\|2316585_2317362_-	hypothetical protein	K4NXB8	Burkholderia_phage	8.2e-08	30.5

DBSCAN-SWA_3

3295734 : 3363181

Xanthomonas_virus(22.22%)

tail,protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101765864.1\|3295734_3296505_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_014037971.1\|3296537_3296900_-	VOC family protein	NA	NA	NA	NA
WP_101765865.1\|3296926_3298954_-	fimbrial protein FimV	NA	NA	NA	NA
WP_049445577.1\|3299058_3300087_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_101765866.1\|3300179_3301217_-	D-glycerate dehydrogenase	M1HTA3	Paramecium_bursaria_Chlorella_virus	3.0e-13	24.3
WP_005410486.1\|3301209_3302313_-	chorismate synthase	A0A291AU41	Pandoravirus	7.6e-76	42.2
WP_101765867.1\|3302309_3303239_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_005417991.1\|3303361_3304012_+	SCO family protein	NA	NA	NA	NA
WP_049445583.1\|3304008_3304851_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_014037978.1\|3304922_3305270_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_101765868.1\|3305293_3306904_-	transglycosylase SLT domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	2.5e-11	30.4
WP_049445586.1\|3307026_3308532_+	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	3.4e-87	46.8
WP_014037981.1\|3308621_3309128_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_101765869.1\|3309215_3310055_-	DUF3025 domain-containing protein	NA	NA	NA	NA
WP_101765870.1\|3310051_3311413_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_049445590.1\|3311601_3311817_-	hypothetical protein	NA	NA	NA	NA
WP_101765871.1\|3311906_3320195_-\|tail	phage tail protein	I7HDJ4	Xanthomonas_virus	4.9e-10	47.8
WP_049445594.1\|3320185_3320581_-	hypothetical protein	Q2NPH1	Xanthomonas_virus	4.7e-28	48.1
WP_014037987.1\|3320580_3321042_-	DUF1833 family protein	I7GYA2	Xanthomonas_virus	8.5e-37	50.3
WP_014037988.1\|3321038_3321392_-	hypothetical protein	I7H418	Xanthomonas_virus	4.8e-16	39.0
WP_101765872.1\|3321388_3323704_-\|tail	phage tail protein	A0A2R3UAA7	Siphoviridae_environmental_samples	3.0e-37	33.2
WP_014037990.1\|3323798_3324017_-	hypothetical protein	NA	NA	NA	NA
WP_014037991.1\|3324121_3324466_-	hypothetical protein	G9FHI3	Rhodococcus_phage	7.5e-22	50.0
WP_014037992.1\|3324465_3324924_-	hypothetical protein	NA	NA	NA	NA
WP_049445708.1\|3325289_3325961_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_014037994.1\|3325957_3326380_+	HIT family protein	NA	NA	NA	NA
WP_014037995.1\|3326628_3327201_-	dCTP deaminase	S5VM63	Pseudomonas_phage	4.5e-72	70.2
WP_042359268.1\|3327279_3328134_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_049445602.1\|3328347_3331137_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.6e-117	31.7
WP_049445604.1\|3331548_3334356_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.2e-112	31.6
WP_049445606.1\|3334474_3337591_-	TonB-dependent receptor	NA	NA	NA	NA
WP_049445607.1\|3338151_3340254_+	peptidase	E3T4I7	Cafeteria_roenbergensis_virus	3.7e-79	32.4
WP_101765873.1\|3340476_3342486_+	M13 family metallopeptidase	NA	NA	NA	NA
WP_101765874.1\|3342610_3343105_+	VOC family protein	NA	NA	NA	NA
WP_101766432.1\|3343180_3344764_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005410509.1\|3344813_3345488_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_101766433.1\|3345581_3345890_-	cysteine methyltransferase	NA	NA	NA	NA
WP_075677048.1\|3345916_3346837_-	DMT family transporter	NA	NA	NA	NA
WP_075677046.1\|3347021_3348380_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	1.4e-34	24.4
WP_049445618.1\|3348376_3349627_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_101765875.1\|3349630_3350875_-	DUF418 domain-containing protein	NA	NA	NA	NA
WP_014647924.1\|3350974_3351457_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_049445709.1\|3351568_3352108_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.8e-22	43.5
WP_005414115.1\|3352239_3353013_+	C40 family peptidase	A0A0A8WIF2	Clostridium_phage	8.4e-21	42.5
WP_101765876.1\|3353302_3354637_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_101765877.1\|3354791_3356498_+	alkaline phosphatase	NA	NA	NA	NA
WP_101765878.1\|3356494_3357040_+	WG repeat-containing protein	NA	NA	NA	NA
WP_158298003.1\|3357358_3357463_-\|transposase	transposase	A4JX31	Burkholderia_virus	9.4e-05	76.9
WP_158298004.1\|3357596_3357929_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_101765881.1\|3358773_3360102_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_101765882.1\|3360138_3360399_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_049447171.1\|3360388_3361267_+	geranyl transferase	NA	NA	NA	NA
WP_014038018.1\|3361354_3361726_-	DUF4870 domain-containing protein	NA	NA	NA	NA
WP_101765883.1\|3361813_3363181_-\|protease	metalloprotease PmbA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP025298

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection