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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019086 Xanthomonas oryzae pv. oryzae strain MAI73 chromosome, complete genome 2 crisprs DEDDh,WYL,cas3,csa3,DinG 0 2 23 0

Results visualization

1. NZ_CP019086
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019086_1 30608-30756 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019086_2 2035994-2036193 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019086_2 2.1|2036041|32|NZ_CP019086|PILER-CR 2036041-2036072 32 NC_049470 Arthrobacter phage TripleJ, complete genome 44378-44409 6 0.812
NZ_CP019086_2 2.1|2036041|32|NZ_CP019086|PILER-CR 2036041-2036072 32 NZ_CP030772 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence 702822-702853 8 0.75
NZ_CP019086_2 2.2|2036120|34|NZ_CP019086|PILER-CR 2036120-2036153 34 NZ_CP015419 Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence 52055-52088 12 0.647
NZ_CP019086_2 2.2|2036120|34|NZ_CP019086|PILER-CR 2036120-2036153 34 NZ_CP015422 Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence 51955-51988 12 0.647
NZ_CP019086_2 2.2|2036120|34|NZ_CP019086|PILER-CR 2036120-2036153 34 NZ_AP014802 Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351 17743-17776 12 0.647

1. spacer 2.1|2036041|32|NZ_CP019086|PILER-CR matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 6, identity: 0.812

cggtgagcaggtcgactgccgtgggtgcggta	CRISPR spacer
ccgggcgcaggccgactgccgggggtgcggga	Protospacer
* * * *****.********* ******** *

2. spacer 2.1|2036041|32|NZ_CP019086|PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 8, identity: 0.75

cggtgagcaggtcgactgccgtgggtgcggta-	CRISPR spacer
aggtgagcaggtcggctgcggtggg-gtgacga	Protospacer
 *************.**** ***** *.*... 

3. spacer 2.2|2036120|34|NZ_CP019086|PILER-CR matches to NZ_CP015419 (Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

4. spacer 2.2|2036120|34|NZ_CP019086|PILER-CR matches to NZ_CP015422 (Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

5. spacer 2.2|2036120|34|NZ_CP019086|PILER-CR matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7440 : 60862 38 Leptospira_phage(28.57%) protease,transposase NA
DBSCAN-SWA_2 322093 : 388812 51 Leptospira_phage(37.5%) transposase NA
DBSCAN-SWA_3 492690 : 602311 94 Stenotrophomonas_phage(40.82%) integrase,transposase,tRNA,terminase,head,holin,capsid,tail,portal,plate attL 518317:518361|attR 561300:561344
DBSCAN-SWA_4 616270 : 710179 55 Acidithiobacillus_phage(26.67%) protease,transposase NA
DBSCAN-SWA_5 761903 : 832817 55 Ralstonia_phage(20.0%) transposase NA
DBSCAN-SWA_6 1073123 : 1135548 43 Leptospira_phage(16.67%) protease,transposase NA
DBSCAN-SWA_7 1243048 : 1394477 108 Ralstonia_phage(15.38%) plate,protease,transposase NA
DBSCAN-SWA_8 1419900 : 1527181 86 Ralstonia_phage(18.75%) tRNA,protease,transposase NA
DBSCAN-SWA_9 1569871 : 1637838 56 Ralstonia_phage(33.33%) tRNA,protease,transposase NA
DBSCAN-SWA_10 1698472 : 1768131 54 Leptospira_phage(20.0%) integrase,tRNA,transposase attL 1696863:1696879|attR 1771644:1771660
DBSCAN-SWA_11 1839081 : 1848969 7 Micromonas_sp._RCC1109_virus(16.67%) tRNA NA
DBSCAN-SWA_12 1974570 : 2061176 53 uncultured_Caudovirales_phage(34.78%) tRNA,transposase NA
DBSCAN-SWA_13 2139416 : 2201857 48 Ralstonia_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_14 2220793 : 2367010 51 Tupanvirus(42.86%) plate,transposase NA
DBSCAN-SWA_15 2601588 : 2706517 60 Ralstonia_phage(20.0%) tRNA,protease,transposase NA
DBSCAN-SWA_16 2901949 : 3018459 84 Ralstonia_phage(13.33%) tRNA,protease,transposase NA
DBSCAN-SWA_17 3409672 : 3464156 35 Acidithiobacillus_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_18 3553095 : 3573861 15 Ralstonia_phage(60.0%) tRNA,transposase NA
DBSCAN-SWA_19 3819009 : 3885684 46 Staphylococcus_phage(14.29%) tRNA,protease,transposase NA
DBSCAN-SWA_20 3905484 : 3911854 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_21 4260144 : 4336924 56 Acidithiobacillus_phage(21.43%) transposase NA
DBSCAN-SWA_22 4406419 : 4576375 104 Acidithiobacillus_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_23 4585101 : 4642979 44 Acidithiobacillus_phage(30.77%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage