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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019085 Xanthomonas oryzae pv. oryzae strain MAI68 chromosome, complete genome 2 crisprs DEDDh,WYL,cas3,csa3,DinG 0 2 23 0

Results visualization

1. NZ_CP019085
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019085_1 30609-30757 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019085_2 2036008-2036207 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019085_2 2.1|2036055|32|NZ_CP019085|PILER-CR 2036055-2036086 32 NC_049470 Arthrobacter phage TripleJ, complete genome 44378-44409 6 0.812
NZ_CP019085_2 2.1|2036055|32|NZ_CP019085|PILER-CR 2036055-2036086 32 NZ_CP030772 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence 702822-702853 8 0.75
NZ_CP019085_2 2.2|2036134|34|NZ_CP019085|PILER-CR 2036134-2036167 34 NZ_CP015419 Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence 52055-52088 12 0.647
NZ_CP019085_2 2.2|2036134|34|NZ_CP019085|PILER-CR 2036134-2036167 34 NZ_CP015422 Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence 51955-51988 12 0.647
NZ_CP019085_2 2.2|2036134|34|NZ_CP019085|PILER-CR 2036134-2036167 34 NZ_AP014802 Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351 17743-17776 12 0.647

1. spacer 2.1|2036055|32|NZ_CP019085|PILER-CR matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 6, identity: 0.812

cggtgagcaggtcgactgccgtgggtgcggta	CRISPR spacer
ccgggcgcaggccgactgccgggggtgcggga	Protospacer
* * * *****.********* ******** *

2. spacer 2.1|2036055|32|NZ_CP019085|PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 8, identity: 0.75

cggtgagcaggtcgactgccgtgggtgcggta-	CRISPR spacer
aggtgagcaggtcggctgcggtggg-gtgacga	Protospacer
 *************.**** ***** *.*... 

3. spacer 2.2|2036134|34|NZ_CP019085|PILER-CR matches to NZ_CP015419 (Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

4. spacer 2.2|2036134|34|NZ_CP019085|PILER-CR matches to NZ_CP015422 (Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

5. spacer 2.2|2036134|34|NZ_CP019085|PILER-CR matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7440 : 60863 39 Leptospira_phage(28.57%) transposase,protease NA
DBSCAN-SWA_2 322093 : 388805 50 Leptospira_phage(37.5%) transposase NA
DBSCAN-SWA_3 492700 : 602321 94 Stenotrophomonas_phage(40.82%) head,tRNA,holin,capsid,transposase,terminase,integrase,tail,plate,portal attL 518327:518371|attR 561310:561354
DBSCAN-SWA_4 616280 : 710189 55 Acidithiobacillus_phage(26.67%) transposase,protease NA
DBSCAN-SWA_5 761913 : 832828 55 Ralstonia_phage(20.0%) transposase NA
DBSCAN-SWA_6 1073134 : 1135559 44 Leptospira_phage(16.67%) transposase,protease NA
DBSCAN-SWA_7 1243059 : 1394488 108 Ralstonia_phage(15.38%) plate,transposase,protease NA
DBSCAN-SWA_8 1419911 : 1527193 87 Ralstonia_phage(18.75%) tRNA,transposase,protease NA
DBSCAN-SWA_9 1569883 : 1637850 56 Ralstonia_phage(33.33%) tRNA,transposase,protease NA
DBSCAN-SWA_10 1698484 : 1768145 54 Leptospira_phage(20.0%) tRNA,transposase,integrase attL 1696875:1696891|attR 1771658:1771674
DBSCAN-SWA_11 1839095 : 1848983 7 Micromonas_sp._RCC1109_virus(16.67%) tRNA NA
DBSCAN-SWA_12 1974584 : 2061190 53 uncultured_Caudovirales_phage(34.78%) tRNA,transposase NA
DBSCAN-SWA_13 2139430 : 2201871 48 Ralstonia_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_14 2220806 : 2366819 51 Tupanvirus(42.86%) plate,transposase NA
DBSCAN-SWA_15 2616952 : 2707769 53 Ralstonia_phage(14.29%) tRNA,transposase,protease NA
DBSCAN-SWA_16 2901761 : 3018271 84 Ralstonia_phage(13.33%) tRNA,transposase,protease NA
DBSCAN-SWA_17 3409481 : 3463966 36 Acidithiobacillus_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_18 3552905 : 3573671 15 Ralstonia_phage(60.0%) tRNA,transposase NA
DBSCAN-SWA_19 3818819 : 3885489 46 Staphylococcus_phage(14.29%) tRNA,transposase,protease NA
DBSCAN-SWA_20 3905289 : 3911659 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_21 4259943 : 4336723 57 Acidithiobacillus_phage(21.43%) transposase NA
DBSCAN-SWA_22 4406217 : 4576175 106 Acidithiobacillus_phage(16.13%) tRNA,transposase NA
DBSCAN-SWA_23 4584901 : 4642779 44 Acidithiobacillus_phage(30.77%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage