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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019089 Xanthomonas oryzae pv. oryzae strain MAI106 chromosome, complete genome 2 crisprs DEDDh,WYL,cas3,csa3,DinG 0 2 22 0

Results visualization

1. NZ_CP019089
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019089_1 30678-30825 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019089_2 2036053-2036252 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019089_2 2.1|2036100|32|NZ_CP019089|PILER-CR 2036100-2036131 32 NC_049470 Arthrobacter phage TripleJ, complete genome 44378-44409 6 0.812
NZ_CP019089_2 2.1|2036100|32|NZ_CP019089|PILER-CR 2036100-2036131 32 NZ_CP030772 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence 702822-702853 8 0.75
NZ_CP019089_2 2.2|2036179|34|NZ_CP019089|PILER-CR 2036179-2036212 34 NZ_CP015419 Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence 52055-52088 12 0.647
NZ_CP019089_2 2.2|2036179|34|NZ_CP019089|PILER-CR 2036179-2036212 34 NZ_CP015422 Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence 51955-51988 12 0.647
NZ_CP019089_2 2.2|2036179|34|NZ_CP019089|PILER-CR 2036179-2036212 34 NZ_AP014802 Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351 17743-17776 12 0.647

1. spacer 2.1|2036100|32|NZ_CP019089|PILER-CR matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 6, identity: 0.812

cggtgagcaggtcgactgccgtgggtgcggta	CRISPR spacer
ccgggcgcaggccgactgccgggggtgcggga	Protospacer
* * * *****.********* ******** *

2. spacer 2.1|2036100|32|NZ_CP019089|PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 8, identity: 0.75

cggtgagcaggtcgactgccgtgggtgcggta-	CRISPR spacer
aggtgagcaggtcggctgcggtggg-gtgacga	Protospacer
 *************.**** ***** *.*... 

3. spacer 2.2|2036179|34|NZ_CP019089|PILER-CR matches to NZ_CP015419 (Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

4. spacer 2.2|2036179|34|NZ_CP019089|PILER-CR matches to NZ_CP015422 (Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

5. spacer 2.2|2036179|34|NZ_CP019089|PILER-CR matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7509 : 60931 38 Leptospira_phage(28.57%) transposase,protease NA
DBSCAN-SWA_2 322157 : 388874 50 Leptospira_phage(37.5%) transposase NA
DBSCAN-SWA_3 492761 : 710247 155 Stenotrophomonas_phage(31.25%) integrase,terminase,protease,holin,tail,capsid,head,portal,tRNA,transposase,plate attL 518388:518432|attR 561370:561414
DBSCAN-SWA_4 761970 : 832884 55 Ralstonia_phage(20.0%) transposase NA
DBSCAN-SWA_5 1073187 : 1135609 41 Leptospira_phage(18.18%) transposase,protease NA
DBSCAN-SWA_6 1146118 : 1218335 60 Bacillus_phage(15.38%) transposase,protease NA
DBSCAN-SWA_7 1233686 : 1394537 115 Ralstonia_phage(13.79%) transposase,protease,plate NA
DBSCAN-SWA_8 1419960 : 1527241 86 Ralstonia_phage(18.75%) tRNA,transposase,protease NA
DBSCAN-SWA_9 1569931 : 1637898 57 Ralstonia_phage(33.33%) tRNA,transposase,protease NA
DBSCAN-SWA_10 1698530 : 1768191 54 Leptospira_phage(20.0%) integrase,tRNA,transposase attL 1696921:1696937|attR 1771704:1771720
DBSCAN-SWA_11 1839141 : 1849029 7 Micromonas_sp._RCC1109_virus(16.67%) tRNA NA
DBSCAN-SWA_12 1974630 : 2061235 53 uncultured_Caudovirales_phage(34.78%) tRNA,transposase NA
DBSCAN-SWA_13 2139472 : 2201913 48 Ralstonia_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_14 2220849 : 2367065 52 Tupanvirus(46.67%) transposase,plate NA
DBSCAN-SWA_15 2601639 : 2706564 60 Ralstonia_phage(20.0%) tRNA,transposase,protease NA
DBSCAN-SWA_16 2901995 : 3046125 104 Ralstonia_phage(12.12%) tRNA,transposase,protease,coat NA
DBSCAN-SWA_17 3409709 : 3464193 36 Acidithiobacillus_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_18 3553132 : 3573896 15 Ralstonia_phage(60.0%) tRNA,transposase NA
DBSCAN-SWA_19 3819042 : 3944529 98 Enterobacteria_phage(12.5%) tRNA,transposase,protease NA
DBSCAN-SWA_20 4261687 : 4338466 56 Acidithiobacillus_phage(21.43%) transposase NA
DBSCAN-SWA_21 4407959 : 4577917 106 Acidithiobacillus_phage(16.13%) tRNA,transposase NA
DBSCAN-SWA_22 4586643 : 4644521 43 Acidithiobacillus_phage(30.77%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage