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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019087 Xanthomonas oryzae pv. oryzae strain MAI95 chromosome, complete genome 2 crisprs DEDDh,WYL,cas3,csa3,DinG 0 2 21 0

Results visualization

1. NZ_CP019087
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019087_1 30678-30826 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019087_2 2036038-2036237 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019087_2 2.1|2036085|32|NZ_CP019087|PILER-CR 2036085-2036116 32 NC_049470 Arthrobacter phage TripleJ, complete genome 44378-44409 6 0.812
NZ_CP019087_2 2.1|2036085|32|NZ_CP019087|PILER-CR 2036085-2036116 32 NZ_CP030772 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence 702822-702853 8 0.75
NZ_CP019087_2 2.2|2036164|34|NZ_CP019087|PILER-CR 2036164-2036197 34 NZ_CP015419 Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence 52055-52088 12 0.647
NZ_CP019087_2 2.2|2036164|34|NZ_CP019087|PILER-CR 2036164-2036197 34 NZ_CP015422 Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence 51955-51988 12 0.647
NZ_CP019087_2 2.2|2036164|34|NZ_CP019087|PILER-CR 2036164-2036197 34 NZ_AP014802 Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351 17743-17776 12 0.647

1. spacer 2.1|2036085|32|NZ_CP019087|PILER-CR matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 6, identity: 0.812

cggtgagcaggtcgactgccgtgggtgcggta	CRISPR spacer
ccgggcgcaggccgactgccgggggtgcggga	Protospacer
* * * *****.********* ******** *

2. spacer 2.1|2036085|32|NZ_CP019087|PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 8, identity: 0.75

cggtgagcaggtcgactgccgtgggtgcggta-	CRISPR spacer
aggtgagcaggtcggctgcggtggg-gtgacga	Protospacer
 *************.**** ***** *.*... 

3. spacer 2.2|2036164|34|NZ_CP019087|PILER-CR matches to NZ_CP015419 (Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

4. spacer 2.2|2036164|34|NZ_CP019087|PILER-CR matches to NZ_CP015422 (Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

5. spacer 2.2|2036164|34|NZ_CP019087|PILER-CR matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7509 : 60932 38 Leptospira_phage(28.57%) transposase,protease NA
DBSCAN-SWA_2 322159 : 388884 49 Leptospira_phage(37.5%) transposase NA
DBSCAN-SWA_3 492753 : 710236 153 Stenotrophomonas_phage(31.25%) capsid,plate,terminase,integrase,tail,head,portal,protease,holin,transposase,tRNA attL 518380:518424|attR 561362:561406
DBSCAN-SWA_4 728071 : 815939 60 Ralstonia_phage(16.67%) transposase NA
DBSCAN-SWA_5 1073176 : 1135599 44 Leptospira_phage(16.67%) transposase,protease NA
DBSCAN-SWA_6 1243099 : 1394525 107 Ralstonia_phage(15.38%) plate,transposase,protease NA
DBSCAN-SWA_7 1419948 : 1527229 87 Ralstonia_phage(18.75%) transposase,tRNA,protease NA
DBSCAN-SWA_8 1569918 : 1637885 57 Ralstonia_phage(33.33%) transposase,tRNA,protease NA
DBSCAN-SWA_9 1746381 : 1768176 15 Leptospira_phage(40.0%) integrase,transposase,tRNA attL 1751035:1751049|attR 1772898:1772912
DBSCAN-SWA_10 1839126 : 1849014 7 Micromonas_sp._RCC1109_virus(16.67%) tRNA NA
DBSCAN-SWA_11 1974615 : 2061220 52 uncultured_Caudovirales_phage(34.78%) transposase,tRNA NA
DBSCAN-SWA_12 2139459 : 2201900 48 Ralstonia_phage(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_13 2220836 : 2367053 50 Tupanvirus(42.86%) plate,transposase NA
DBSCAN-SWA_14 2617184 : 2708000 53 Ralstonia_phage(14.29%) tRNA,transposase,protease NA
DBSCAN-SWA_15 2901992 : 3018502 84 Ralstonia_phage(13.33%) transposase,tRNA,protease NA
DBSCAN-SWA_16 3409722 : 3464205 37 Acidithiobacillus_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_17 3553145 : 3573911 15 Ralstonia_phage(60.0%) transposase,tRNA NA
DBSCAN-SWA_18 3819060 : 3944117 99 Enterobacteria_phage(12.12%) tRNA,transposase,protease NA
DBSCAN-SWA_19 4261270 : 4338050 56 Acidithiobacillus_phage(21.43%) transposase NA
DBSCAN-SWA_20 4407544 : 4577502 106 Acidithiobacillus_phage(16.13%) transposase,tRNA NA
DBSCAN-SWA_21 4586228 : 4644106 44 Acidithiobacillus_phage(30.77%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage