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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019088 Xanthomonas oryzae pv. oryzae strain MAI99 chromosome, complete genome 2 crisprs DEDDh,WYL,cas3,csa3,DinG 0 2 22 0

Results visualization

1. NZ_CP019088
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019088_1 30678-30825 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019088_2 2036100-2036299 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019088_2 2.1|2036147|32|NZ_CP019088|PILER-CR 2036147-2036178 32 NC_049470 Arthrobacter phage TripleJ, complete genome 44378-44409 6 0.812
NZ_CP019088_2 2.1|2036147|32|NZ_CP019088|PILER-CR 2036147-2036178 32 NZ_CP030772 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence 702822-702853 8 0.75
NZ_CP019088_2 2.2|2036226|34|NZ_CP019088|PILER-CR 2036226-2036259 34 NZ_CP015419 Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence 52055-52088 12 0.647
NZ_CP019088_2 2.2|2036226|34|NZ_CP019088|PILER-CR 2036226-2036259 34 NZ_CP015422 Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence 51955-51988 12 0.647
NZ_CP019088_2 2.2|2036226|34|NZ_CP019088|PILER-CR 2036226-2036259 34 NZ_AP014802 Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351 17743-17776 12 0.647

1. spacer 2.1|2036147|32|NZ_CP019088|PILER-CR matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 6, identity: 0.812

cggtgagcaggtcgactgccgtgggtgcggta	CRISPR spacer
ccgggcgcaggccgactgccgggggtgcggga	Protospacer
* * * *****.********* ******** *

2. spacer 2.1|2036147|32|NZ_CP019088|PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 8, identity: 0.75

cggtgagcaggtcgactgccgtgggtgcggta-	CRISPR spacer
aggtgagcaggtcggctgcggtggg-gtgacga	Protospacer
 *************.**** ***** *.*... 

3. spacer 2.2|2036226|34|NZ_CP019088|PILER-CR matches to NZ_CP015419 (Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

4. spacer 2.2|2036226|34|NZ_CP019088|PILER-CR matches to NZ_CP015422 (Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

5. spacer 2.2|2036226|34|NZ_CP019088|PILER-CR matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7509 : 60933 38 Leptospira_phage(28.57%) protease,transposase NA
DBSCAN-SWA_2 322162 : 388888 50 Leptospira_phage(37.5%) transposase NA
DBSCAN-SWA_3 492791 : 710279 155 Stenotrophomonas_phage(31.25%) tail,plate,capsid,integrase,protease,head,terminase,tRNA,transposase,portal,holin attL 518418:518462|attR 561400:561444
DBSCAN-SWA_4 728115 : 815983 60 Ralstonia_phage(16.67%) transposase NA
DBSCAN-SWA_5 1073223 : 1135648 44 Leptospira_phage(16.67%) protease,transposase NA
DBSCAN-SWA_6 1243142 : 1394569 107 Ralstonia_phage(15.38%) protease,plate,transposase NA
DBSCAN-SWA_7 1419992 : 1527274 87 Ralstonia_phage(18.75%) protease,tRNA,transposase NA
DBSCAN-SWA_8 1569964 : 1637944 57 Ralstonia_phage(33.33%) protease,tRNA,transposase NA
DBSCAN-SWA_9 1698578 : 1768237 54 Leptospira_phage(20.0%) transposase,tRNA,integrase attL 1696969:1696985|attR 1771750:1771766
DBSCAN-SWA_10 1839187 : 1849075 7 Micromonas_sp._RCC1109_virus(16.67%) tRNA NA
DBSCAN-SWA_11 1974676 : 2061282 52 uncultured_Caudovirales_phage(34.78%) transposase,tRNA NA
DBSCAN-SWA_12 2139522 : 2201963 48 Ralstonia_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_13 2220899 : 2367422 51 Tupanvirus(42.86%) plate,transposase NA
DBSCAN-SWA_14 2617555 : 2708371 54 Ralstonia_phage(14.29%) protease,transposase,tRNA NA
DBSCAN-SWA_15 2901210 : 3017720 84 Ralstonia_phage(13.33%) protease,tRNA,transposase NA
DBSCAN-SWA_16 3408941 : 3463433 36 Acidithiobacillus_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_17 3552372 : 3573138 15 Ralstonia_phage(60.0%) tRNA,transposase NA
DBSCAN-SWA_18 3818288 : 3884976 46 Staphylococcus_phage(14.29%) protease,tRNA,transposase NA
DBSCAN-SWA_19 3904776 : 3911146 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_20 4255049 : 4331829 56 Acidithiobacillus_phage(21.43%) transposase NA
DBSCAN-SWA_21 4401323 : 4571281 106 Acidithiobacillus_phage(16.13%) tRNA,transposase NA
DBSCAN-SWA_22 4580007 : 4637885 44 Acidithiobacillus_phage(30.77%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage