CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019601	Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence	0 crisprs	NA	0	0	4	0
NZ_CP019600	Brachyspira hyodysenteriae strain BH718 chromosome, complete genome	8 crisprs	DinG,cas4,csa3,RT	0	4	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019600_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019600_1

287082-287174

Orphan

Consensus_repeat	Method
GAGGAAGTATCAAATAAAGATTCAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019600_1

>merge|NZ_CP019600|1|287082-287174|CRISPRCasFinder
GAGGAAGTATCAAATAAAGATTCAGAGTTCTTGAATGACTTTGAAGAGTTTAAAAACAAAATAACTGAGGAAGTATCAAATAGAGATTCAGAG

>NZ_CP019600|1|1|287082-287174|CRISPRCasFinder
GAGGAAGTATCAAATAAAGATTCAGAG	TTCTTGAATGACTTTGAAGAGTTTAAAAACAAAATAACT
GAGGAAGTATCAAATAGAGATTCAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019600.1\|WP_047104025.1\|259299_259974_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NZ_CP019600.1\|WP_047111010.1\|298223_304040_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP019600.1\|WP_047108183.1\|262016_263015_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP019600.1\|WP_047104029.1\|264177_265428_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP019600.1\|WP_012669998.1\|263092_264100_-\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|376862
NZ_CP019600.1\|WP_101638418.1\|305488_307306_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP019600.1\|WP_020063547.1\|293860_295243_-\|gluconate-transporter	unknown	unknown	gnl\|CDD\|308194
NZ_CP019600.1\|WP_101638416.1\|256024_258136_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP019600.1\|WP_028331247.1\|293377_293812_-\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NZ_CP019600.1\|WP_047111007.1\|265454_267485_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_047105079.1\|304226_305366_-\|DUF3298-and-DUF4163-domain-containing-protein	unknown	unknown	gnl\|CDD\|378702
NZ_CP019600.1\|WP_012669996.1\|260922_261912_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224688
NZ_CP019600.1\|WP_012670008.1\|296842_297862_-\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NZ_CP019600.1\|WP_012669991.1\|255177_255876_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP019600.1\|WP_020063536.1\|258210_259239_-\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NZ_CP019600.1\|WP_020063544.1\|291766_292507_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_020063545.1\|292509_293331_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012670006.1\|295282_295594_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NZ_CP019600.1\|WP_020063538.1\|260106_260718_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012670007.1\|295753_296659_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|274250

Protein	Function_ID	Function_description	E-value
NZ_CP019600.1\|WP_047104025.1\|259299_259974_-\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	2.58336e-52
NZ_CP019600.1\|WP_047108183.1\|262016_263015_+\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	1.28459e-178
NZ_CP019600.1\|WP_047104029.1\|264177_265428_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NZ_CP019600.1\|WP_012669998.1\|263092_264100_-\|endolytic-transglycosylase-MltG	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	3.53324e-105
NZ_CP019600.1\|WP_101638418.1\|305488_307306_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.2592e-51
NZ_CP019600.1\|WP_020063547.1\|293860_295243_-\|gluconate-transporter	gnl\|CDD\|308194	pfam02447, GntP_permease, GntP family permease. This is a family of integral membrane permeases that are involved in gluconate uptake. E. coli contains several members of this family including GntU, a low affinity transporter, and GntT, a high affinity transporter.	6.95809e-77
NZ_CP019600.1\|WP_101638416.1\|256024_258136_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	3.60145e-66
NZ_CP019600.1\|WP_047111010.1\|298223_304040_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP019600.1\|WP_047105079.1\|304226_305366_-\|DUF3298-and-DUF4163-domain-containing-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	3.24126e-09
NZ_CP019600.1\|WP_012669996.1\|260922_261912_+\|hypothetical-protein	gnl\|CDD\|224688	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown].	3.84597e-56
NZ_CP019600.1\|WP_012670008.1\|296842_297862_-\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	3.51807e-26
NZ_CP019600.1\|WP_012669991.1\|255177_255876_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	2.86731e-53
NZ_CP019600.1\|WP_020063536.1\|258210_259239_-\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	4.65659e-122
NZ_CP019600.1\|WP_012670006.1\|295282_295594_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	2.66931e-18
NZ_CP019600.1\|WP_028331247.1\|293377_293812_-\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	1.48953e-78
NZ_CP019600.1\|WP_012670007.1\|295753_296659_-\|radical-SAM-protein	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	5.25141e-08

>NZ_CP019600.1|WP_047111007.1|265454_267485_-|hypothetical-protein
MKKVIAFILLLYFPLFSQNSITFPDYIEDLQNKSPKKSIDWFKKNSYSDEYGVNEYVFDFYRGVSRYLSFVKFGSARTEVNRAASDFRKALELPNDPVYSYNDRAFLYLGGILTILPGDKELPARIFKYYADNCKTSNPNYPTAIYWSMYLSYITPMVYESYYETLNILSKNPNNKIYDYFTGENKTINEMMKKLKSPENMTQKVYEWTTSNMDVYTLITNSIPILPEEDGLSVFTAQKFDTFERYSPTKKIDEIEEEIEKDEDLVNTEIAPEEKEELDELQNIAKREKTPENVSNRRIPSIEKEIVDEIVIDDPKTIEYKTNILRGTKEQKDIPQPTNIETEIEDKPLYPLTILIDKNPNNGPIGVDIEDYSFNTEVSTNFVIEVSEGMYEAYISFGDKLYTNAVKVEKDKYNLFSIIIQDQTAPTNETVENIEPIEEDLLDNEEKKEDVSLTVGKENVPANKYDGNAENTRNIIRDVLSRPSKVATEWFNTNPYNEYMGISVEEYTYYRGVSYYSRFLNEGRKSSEFAAQAKSDLTFAYNKKDNSNLLMRTRLYLGAVNLFAYNDLYEADKMFAEVGASLAEDHRYYPTVLYWRSRIGVADTAKLDEFSKTLSSKAGNTQILDYSSTMFKDLSAMPSYEEKITGIRAVKNSKPIYEPPKSTSKAGSSKTQEVLN
>NZ_CP019600.1|WP_047104029.1|264177_265428_-|histidine--tRNA-ligase
MLDIKKPRGTNDFFYDSSKRLEYIENKIKNIVKLYGYGRIRTPLFEYTDLFTRGIGEGTDIVGKEMFTFEDRGGRSLTLRPEGTASVARAYVENSMQNEFAINKLFYLGTMYRAERPQKGRYREFNQFGVECIGNSSPLIDAEIILLNINVLKEFGIDNVNLLINTVGCSKCKPSYNNALKEAIGSRKEELCETCQKRYEGNILRILDCKNEKCKETIKDIPKFYDYVCDECKEHFDRLCEELTRIGQNFTVDPMLVRGLDYYTKTAFEVQTNALGAQSAILGGGRYDNLIGIFNNGKDVPAVGSAMGIERLLLVLENQNNIITDRLDAFIVAFKETENEVLKIMQTLRANNISCDYDFAVKSIKSQFKSANKRNAKYAVVLGEDEFKRGMCKLKNMDSGEEKEIYINDIHNNIKK
>NZ_CP019600.1|WP_012669998.1|263092_264100_-|endolytic-transglycosylase-MltG
MKKLFIILIILAAIVSASSVAFIQYMISPVGGDNEKVYFEIKQGEGASSIAKKLELQGLIRNSKIFLVFAKYLKYDRKLLSGYYEVSRNMNMIDIMKHLNSGKQAMVRLTIAEGKNIYEIATYLESQGFTTKKEFLEVCHDKEILKKYNIPSDSVEGYIFPSTYYIVKGNPTKVLVMHMIDSLFKQFPDLEERSKKMGRNVHEILTMASIVEKEMGPLDDPRLISSAYYNRLKIDKRLEADPTTIYAMTLVKGDYIEKPNLKYADLRMEHPYNTYKNTGLPPGPICSSGAKAIEAALNPADTDYIFFVADGTGKHAFSVTYEEHVENINRYIFKK
>NZ_CP019600.1|WP_047108183.1|262016_263015_+|tryptophan--tRNA-ligase
MSKKVMLSGIQPTGSLHIGNYLGALKNWADILNDYYGFFCIVDYHAITVEYDVTQMQKRIMDAAVEYLACGLDPNKCSIFVQSDVRAHTELAWIFNSIIPVAELERMTQYKDKSRKNVENINAALLTYPSLMAADILLYHPDIVPVGEDQEQHVELTRMIVRKFNNRYGEYFKEPDTYHGKVLRILGLDGQNKMSKSLNNHIALSLTAEETEKLIMQKAMTDTNRKLKTDPGNPDICNVYSYHKIFSSEDEQKEVCEGCKNASIGCVQCKRMLAKNINNELAPIRENINKYSNDKDYVYDVLKEGAKKASEVAEKTLYEVRNLMGLVDDKRK
>NZ_CP019600.1|WP_012669996.1|260922_261912_+|hypothetical-protein
MIKNIAHIKFRGSNIGKFEHLHIENIKIKDACVIETDEGIEIGHVLNFEDIDVDLLEEDNNNSNSESTAENNDDIQEDNEAINEEEISEELKDIAAEEENNNIKTKNNKNKIFNILRIADDKDLEQYKTNMEDAAEAFKICKEKVNNHNLDLKLISSYYFLDRAKLLFEFIAEERIDFRELVKDLAAHFKTRIELRQIGVRDEARSIGGCGICGRELCCKVIKGKFETITIKMAKEQGMLLNTMKISGQCGRLMCCLAHEYKAYCALKKDLPKVGTKLVFNNVPAVIKELNPLNKKLLIETEDKRLIYISVSDLKTNEEGFLIANIKAE
>NZ_CP019600.1|WP_020063538.1|260106_260718_-|hypothetical-protein
MKLFLLSPLFFFMLSCLTVPEIYLNNNVIYWREYVANKSASDIYQNIYRFDKNADMDYIVYGYKSKIKYKLFLMKESNEAFYYKNVTLKTYIIESLPSFNLYEDALNKKDYSTLYMNNYFNRTTFSDTSIYLPIGLAFKDGNLYIAKTYGEDYKDRLSHWLRKNGYGTGKEWIPAINVDWNSYPVPTEHEIDWNELEIIGKLF
>NZ_CP019600.1|WP_047104025.1|259299_259974_-|hemolysin-III-family-protein
MEKSAFYIDIQNKSNKSKKIGELYSAISHGIGALLGIAGLVLMLVKTKVNSIPIIIYGLGIIFLYTFSSLYHFFPDGKVKQIFRKFDHIGIYIFIAATYTPVCIFSLPRNVGILILSVIWSCALIGILSNTVMKYKNIVLRLVLYILMGWIIIFAFKPLMNRFDILHLNWLIWGGIFYTIGAFLYALGKKCNDKTKQFTHDIFHIFVLMGSFCHYWFLYSYVIN
>NZ_CP019600.1|WP_020063536.1|258210_259239_-|tRNA-2-selenouridine(34)-synthase-MnmH
MVKVIDIEEFLKFANYDELPIIDVRSPIEYNHAHIPNAHNVYLFNDEERKDVGTIYKQIGRKEAILKGLEYVSVRMTSILKTIDEIAKKYNSTNKILMHCFRGGMRSESTAWLCSSYGYEVYVLKGGYKRYRNYVLDSFERDYKIYLLTGRTGSGKTLILNKLKSIGYNVIDLEQIAKHKGSAFGWINEGEQPSQEQFENNLSYELLKYDIDSTLWFEDESLLIGRRAIPKSLFNKMREAEKIIYLDIPKECRAEYIVNTYGKYSIDDLKESILKIKKRLGGERLKESLELLDNGNIYECVLNMLYYYDKAYKLSINENKLVSIKCTDNNFDNIVQSIIREI
>NZ_CP019600.1|WP_101638416.1|256024_258136_+|methyl-accepting-chemotaxis-protein
MRKLQSLKVKIPFFVMLLVTIMTIILVTLIINIGSQGIRSSAIFGFESTTKVYSIMINVWLAQNIYLSESIAGSFPEFRNYIVSRTPENKAIVDATLVNVVNNNPSIEGMVLLDGQGNVIADSLGGQIMSVARNFSGTELWQKIMAGESSMHYTVDQSPADSTKWVIKIFSPLKDGTGNIIGALSIMVDWLKFIDKELNLVKLGNTGHPFIVDKDRWVIADPIPSHVRSEVLRNADYIKYAVENESGYYEFKSPFNDKDSIATFYKEPISGWSVVMSIESAELFAHITSMKRYAIIGTIVILIVASFFITFYIGRITKILHLLAVDLSRLSTGDLTISATPGFEKRKDEWGEIAIAINEITDQLNEKVRIVYDGAYTVKASANEVAQGNIDLSNRTENQASGLEETASSMEEIASTIKSSAEHTLEGNNMMINSKKAIEEAGRIIEESTQNIEAVYESSSKISAITKIIEDIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQTTQTSVKDITTLVADSEEKIAAATETARESKEIFQNLRVQIEETAKIMQDLSSTAMEQQAGVDQVNIAITQMDMTTQQNAALVEEATAASEALFSQAEELLSAMEFFKLRGSNYKKNIAKVERKKASPTTDSKAVQENKPATKSEFKKPELKSPIKKHHEEKMPAPTPAKTVKDNEFGNTFDTSKDTSDGFESF
>NZ_CP019600.1|WP_012669991.1|255177_255876_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MNILAFDTVSSSFSIALQKDDNSIIEYNKEDVRNHNEEILPVLNNFLKENNISLNKIDYIVLGIGPGSFTALRIAFATVKTICYAKNIPIIGISSLDTLYENIKDYDGIKASMIDARKGSIYTDIYSGNKKIKENLDLTYDEFINIINSIENDNKILTLCGDGFYKNRDYFLDKLINYKINDLDKSFNIIKASNSIKLSIPKIKSNNFDNIFNLLPLYLRNSEAENKKINEK
>NZ_CP019600.1|WP_020063544.1|291766_292507_-|hypothetical-protein
MKKIFIFNIIAIFLFISCNEELITIVDEYNSPYSVSAIPGNNKVSISFWSGVIASDFAGFNIYAGNSASFTQPDNAIKNSSGAYPTVAGSNHTRTNYVIEIPNYTFNNGTLYYVAVTAYGTNDLVDKKYIETKIYSALPVVPRPEGNGNGTTLTADTATVGNVAGGKVTAAGGWGVQYFGYQTNFNAVVVVTNYTDASFDTEAVYSVNGLYIFKQTGGNGLAKIWIRSGNSYQWAYQADASKWWGI
>NZ_CP019600.1|WP_020063545.1|292509_293331_-|hypothetical-protein
MNILKLFLFTILLSFPIISCGLPDVTGITLELNQPYITKVIPGNNQLTVEFEAQNNEPSFSGYNIYFGDSTDPRKYRLYNQQKALPTISDKTSTVIKKYSFTIKVGSYFSTNGTDVYTLKESDLNNGIPVYVWVSAYQITPQLESYYYYDNFVKMGTPRPEALNQTVTPNNNISMEGRDLARLIVSGGNLYFQNVGGTSMMAVSGNSLNDVVIPPENGYGNVDLQVKANRLYLIKITDGNNAYYGKIYVRSVNGTSSITVDYCRQTSANILSY
>NZ_CP019600.1|WP_028331247.1|293377_293812_-|dUTP-diphosphatase
MLKIKIINKSSNPLPKYQTVGSSGLDLHANIDNPITLNKNDIVLVPTGLFIEIPEGYEAQIRSRSSLALKNGIFCLNSPATIDSDYRGELKIILASLTDIPFTINHGDRIAQMVFAKVEKVSFEEVDSLSDTQRGEGGFGSTNK
>NZ_CP019600.1|WP_020063547.1|293860_295243_-|gluconate-transporter
MISYFVIAMLAISIIVVMVLTIKFKIHPFIAMLLVAIFLAFTLHVPSNNDTNYITEISALIGKGFGNALASVGIIIVLGSVIGNILEMSGAALKLGEIVLRIVGNSHPALAMNILGFIVSIPVFCDSGYLILTPLRKAVAKKSGASPVALSVALSTGLYASHALIPPTPGPAAVVNLFGLEAHLLTIIIVGLIVAIPTSLVGAIYGIFISKYIKKPNYPDKSPTYETLISDIGGLPPTWKALAPIVVPILLMAIGSIVRFDSFRVGSGIIKNIFIFLGEPSMALFIGFLFSLLLTHKFNKEEISMWIGDGIRSSGSILAIVGASGAFAEVLKSTELAKIIPELGHIFGSLNMGLILPFIMASALKIMLGSSTIAVVTVASLFAPLLGTLGFNTPISQILVLMSIGAGSMIASHANDSYFWIVVELSGLKINDAYKARTLATFVQGITALIIIMILAFLFR
>NZ_CP019600.1|WP_012670006.1|295282_295594_-|HPr-family-phosphocarrier-protein
MTLTNVVTIKSKNGMHLRPAGVLSQISSKNEYSNIGIFLLYNGVRADAKSVFNIMGLGAFQGANLILEIEYEDGMEETAKQAEKELVYFFEEGYIHAEVPEDD
>NZ_CP019600.1|WP_012670007.1|295753_296659_-|radical-SAM-protein
MDKKSIDNIVWYIPIRKLRDAVRDFLTSFYTIEKSVNTFMPVKSLRNIEIQISEHCNMACYSCSHFSQLAKEEFRDINILENDLKRLSEITNGLVDVFRITGGEPLLNPRCTEYYSIINKYFPDSIIYLNTNGILLLKQNEKFWEECKKYKVIIIVSGYPLNLDIEKIKEKCKSYDIHFDIYIEKEQEKKISYKTLLNINSTMDPSENFYNCGARNGNCIHLYNGKIYPCAIVSNIRHFNSFFNTNYPVSTLDYIDIHKTTAAEIGYFLSRPVPFCKYCIQPPKIASEWKPSKKDIHEYID
>NZ_CP019600.1|WP_012670008.1|296842_297862_-|FkbM-family-methyltransferase
MDKKSIDNIVWYIPLKKLRDAIRDYMLRDYKNCISPWDIDAIIDFRKSIRNDDNFIEKYKKLISNLDDESIKTINYILKYILEYKNIDDKVIFSDKESSILEKILEEHFFNIIKINDQCFIYDKYLLPSNHFNINVFYYKNGINNIKNLQKIKSKNIIDAGGYIGDSAIVLADYTDKKVYSFEPFKQHYEIMLKTINLNSNTNIIPVNMALGDKNKSLDIFSDGEIKGSHSLETTFSNENNSKNKIEMITLDQFVEEKNIEVGLIKTDLEGFEQPFLNGAINTIKKYKPVLLISIYHSYSDFFEIKPMIEALDLGYSFKILKIKEPSLIGETILIAEIE
>NZ_CP019600.1|WP_047111010.1|298223_304040_+|excinuclease-ABC-subunit-UvrA
MANNSIEIRGAKEHNLKNVSLSIPHKTLTTLTGVSGSGKSSLAFDTIFKEGQRRYLESLSAYARQFLGVMAKADVEHIEGLSPTISIDQKSVNKNPRSTVGTVTEIYDFFRLLFARLGVPYCSKCGHKISKQSEDQIAQSVLREFAEKRILVLAPIVRDRKGEYRKEIEEVKLAGYPRIRIDNIVYKFDEDEIPELKRYEKHTLEIVIDRIKVEDKYLSRITDDIERAIRITKGLVAFYEEHEKSEEVLETQTPESTEENTKTKKKKIKMSKQFEIDKYYKLYTTERSCANCGHSIADIEPNLFSFNNPMGACTVCGGLGVEHVFTEKHIVKDENLNIYEGALSCFVDDHIGFDMEYGTDELEVIAKTYKIDLKKPWKDLTKTEKKYLLYGTDKEVKWRKRFWYHSKLVEERVPGILDRLKYDYETYKNSYYANFMDEVQCPKCKGKRINEDALSVKFNGKTIADFSSMTIEDLYDYFTKLKLKPNEEVIGAPIVKEIIYRLTFLVKVGLTYLTIERSSPTLSGGESQRIRLASQIGSGLEGVLYVLDEPSIGLHQSDNKKLIESLKTLRDKNNTVIVVEHDKETMEESDYLIDIGPNAGVNGGEVVGIGDYEEFIKSDRSYTAKYLRGDDDIEIPKQRREGNGKFLKVIGANQFNLKNIDVQFPLGVFIVVTGLSGSGKSTLVENILMRALHNHFYGKTLTPGSHERIEGLENIDKVIEVDQSPIGRTPRSNPATYTKVLSPIRDLFAATKLAKMRGYDKGRFSFNVKTGRCPTCEGAGVIELEMQFLSNVLVPCEECGGKRFNAETLDVKYKDKTIYDVLEMSVSEAIAFFDGITSITRILKIMEDIGLGYIKLGQPSTTLSGGEAQRIKLASELHKISTGNTLYILDEPTTGLHFEDIKKLLKALDGLVEKGNTVLVVEHNLDVIKCADHIIDMGPLSGDKGGRVVAEGKPEDIINVKESLTVKELKEILKPSKKKKENIKTEETKKEENTSLIIKGANKHNLKNISLTLPKNQINVITGVSGSGKTSLAFDTIFKEGQRRFVESLSTYARRFLGRFEDANVEKIEGLAPAIAIDQKNVSRNPRSTVATVTEIYDYFRLIFARLAKPHCPHCNDKDTLKAETPSILATEIIDTMDLHKLVIISPLYHSSFNHRFTFDDNDAKDIKKIIEKTREAGYVRMQINNNDYVIDDITEDDIKELSKEEIYSVGIVIDRIVVGKDKRARIADAIDRAMDLSNGIAHIKASHGIIIKESFHTKFPACLLHGILFDFEVTPRHFSFNSHWGYCEECKGLGSKPTFSIDLAIKDSTKPLFDGALDTAIHNMFSTPGKHYTDSLMRFLRRNGITKKDLYDTPFNELDQKVIDTFFFGGDYSVGNIITAWHSNNDVTSEDYSEWKDKSLGKFFIDEECDSCHGERLNEIIRSYTIQNKNISQVCAMTVEEAIHLFDELPNLLSERENTISKEAIKEIRTRLSFLDKVGLGYLFLSRKYATLSGGEAQRIRLASQLGSKLTGVLYVLDEPTVGLHPRDTNHLLDTLKELRDLKNTLVIVEHDRDTMKAADNIVDMGPYAGAFGGEVVFQGKYDDILKDDNSLTGNYLSERKKVFEKTAVRNEETECIKLKNVSTNNLKNIDVDIPLKKIVVVTGVSGSGKSSLIIDTLYPALKKRRLNQYSKFESVEIPSIVSDTILVDQISIVGSIRSTLVSYSKVFDKIRNIFAKTPTAKAKAFAPGRFSYNGKEGRCNICEGKGIRKIAMHFLSDMEIVCEACGGKRYNDETLSVRFKSLNIAEVLELTVDEAIEFFDFDKSVTKTLSIMSEVGLGYIKLSQRLDTFSGGELQRLKLATELAKKQGDEHIVYILDEPTTGLHFDDVNKLLIALNKLVEKGHSVIIIEHNPDVIKAADYIIDLGLEGGSNGGEIIAKGTVEEILEMKKGYTWKYI
>NZ_CP019600.1|WP_047105079.1|304226_305366_-|DUF3298-and-DUF4163-domain-containing-protein
MKAIFLTALCTLFIFVSCGNSNNAKQETATENNTAEITPLHLSENEKANNYEVVYLVADTGEYINSEIAQNESGNFGVVYYRDINQNLNTFNVTKAGELDEGNISATSYDNKTLEGNFPSTAYPFVAKIDGKEMTFKAAKTPVTGARIIEYSYSNVSPESSTNGQRFFQFKTAIFALKNDSKSANIDKINLDINKDFGITDASTFNDLSKLLTAQSLISNKMTPIYDEWVKSDYISHIENYSSQYGIDYLSEKVVSINKMVYEYTGGAHGNYATVNSVYSLDTGNQLKIADLITDLKNADLINLVKDKLVKIEGRDANSYSGLDELSLENNNFYLTSKGLVFTWGIYEIGPYAIGETRVLIPTEEIKPYLKDEYKTIFE
>NZ_CP019600.1|WP_101638418.1|305488_307306_-|methyl-accepting-chemotaxis-protein
MTKIYKKNKLILSFIIPYAISIMVIFIVVLSLYIPKYKSEFITVSKDNAKLLSNILDNNMYAIKKQMEIFSSYLEAEYYTNNFPTIMSNIVRRDSNIANIYFATTVPYKDGGVMFNSAPLPSDYDQTTREWFIKALETTNIFISNPYIDVVTESLAIAFSKTIYNPDRSVRGILGVDIIFNEIANDTLSNAMLYNYNISLINGEGIYFYHKDKNAILKENIFNKEIFANYKDDILGTDSFSFIKNKKIYINTNIKNTPWYLIAEGDIDILEWNVLRLIIVMIVGFLFLISIESILVTIIAKPISTTLNNTINIIESMSEGNFNASFNKKELEKKNETGSLVRAIKTMQNKLGSTIHSMTKEINSINSSMEIIADGNENLSQRVTAQSSSLEELTSSIEFVFSSIKETVVNTDNAKKMSDNMMESTMKGVNAIKNTSKNVIEVAEYSKKIANITSIIESIAFQTNILALNASVEAARAGDQGKGFAVVASEVRNLSTNVSNAAKDISSIVNETTKKIEIGETTVRESSNALDEIENFANEISGILIDILKAIKNEEESMSQINTAVNNLNNINYTNSNIAEQGVNESKNILEKTENIVNEVSYFKF

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Crispr_ID: NZ_CP019600_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019600_2

647316-647939

Orphan

Consensus_repeat	Method
CCAATTATTTAAAGGCTGATTAAA	CRISPRCasFinder

8 spacers

The CRISPR arrays of NZ_CP019600_2

>merge|NZ_CP019600|2|647316-647939|CRISPRCasFinder
CCATTTATCAAGAGGCTGATTAAATTCTTCTGTAAAAGCAAACATATGCTCTATATTTGTTACTTTAGACATATTCCAGCTATTTAAAGGCTGATTAAATTTACCGCATGCTCTAAATGCAAATTCCATACTTTCAACATTAGAAGTATCCCATTTATCTAAAGGCTGATTAAAATTTTCACAGTCCTCAAATATATGTTGCATATTTTTCACATTAGATACGTCCCAATCATTAAGAGGCTGATCAAAAGCTTTACAATAACGAAAAGTCTTTGATAAATCTTCAACATTAGATACATTCCAATTATTTATATTCTGATTAAATTTCAAAGCCACATTAAACATATTAGACATATCTTTAACATTAGAAACATCCCATTTGTCCAAAGGTCTATTAAATGCTTCACAGTTATGAAACATATCGCTCATATCTTTCACTTTAGATACATTCCAATTATTTAAAGGCTGATTAAACTTTTTAGCACCAAAAAACATGCCAGACATATTTTCCACATTTGAAACGTCCCATTTATTTAAAGGCTGATTAAAATATGTACAACCAGCAAACATATAAATCATATTTTTCACTTTTGATACATTCCAATTATTTAAATTAGAATTAAA

>NZ_CP019600|2|2|647316-647939|CRISPRCasFinder
CCATTTATCAAGAGGCTGATTAAA	TTCTTCTGTAAAAGCAAACATATGCTCTATATTTGTTACTTTAGACATATT
CCAGCTATTTAAAGGCTGATTAAA	TTTACCGCATGCTCTAAATGCAAATTCCATACTTTCAACATTAGAAGTATC
CCATTTATCTAAAGGCTGATTAAA	ATTTTCACAGTCCTCAAATATATGTTGCATATTTTTCACATTAGATACGTC
CCAATCATTAAGAGGCTGATCAAA	AGCTTTACAATAACGAAAAGTCTTTGATAAATCTTCAACATTAGATACATT
CCAATTATTTATATTCTGATTAAA	TTTCAAAGCCACATTAAACATATTAGACATATCTTTAACATTAGAAACATC
CCATTTGTCCAAAGGTCTATTAAA	TGCTTCACAGTTATGAAACATATCGCTCATATCTTTCACTTTAGATACATT
CCAATTATTTAAAGGCTGATTAAA	CTTTTTAGCACCAAAAAACATGCCAGACATATTTTCCACATTTGAAACGTC
CCATTTATTTAAAGGCTGATTAAA	ATATGTACAACCAGCAAACATATAAATCATATTTTTCACTTTTGATACATT
CCAATTATTTAAATTAGAATTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019600.1\|WP_012670304.1\|665180_665333_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224315
NZ_CP019600.1\|WP_020063750.1\|631352_632525_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP019600.1\|WP_101638447.1\|660173_661793_-\|gamma-glutamyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223482
NZ_CP019600.1\|WP_047101600.1\|651189_652056_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP019600.1\|WP_047101595.1\|638052_639048_-\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|240661
NZ_CP019600.1\|WP_012670287.1\|634025_635930_-\|transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|223839
NZ_CP019600.1\|WP_012670299.1\|657752_659108_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP019600.1\|WP_047108458.1\|641117_642812_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP019600.1\|WP_012670286.1\|633105_634008_-\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572
NZ_CP019600.1\|WP_047104371.1\|639171_640200_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012670300.1\|659248_659911_-\|L-fuculose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|181226
NZ_CP019600.1\|WP_047111354.1\|642882_645474_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP019600.1\|WP_012670285.1\|632551_633103_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_047117610.1\|652163_654578_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP019600.1\|WP_020063812.1\|654937_657511_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP019600.1\|WP_012670291.1\|640387_641080_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP019600.1\|WP_101638446.1\|648567_650955_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP019600.1\|WP_020063817.1\|664537_665179_-\|Pr6Pr-family-membrane-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_020063751.1\|636330_637956_-\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173869
NZ_CP019600.1\|WP_101638448.1\|662324_664379_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350

Protein	Function_ID	Function_description	E-value
NZ_CP019600.1\|WP_012670304.1\|665180_665333_-\|hypothetical-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	4.43477e-06
NZ_CP019600.1\|WP_020063750.1\|631352_632525_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.67001e-07
NZ_CP019600.1\|WP_101638447.1\|660173_661793_-\|gamma-glutamyltransferase-family-protein	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP019600.1\|WP_047101600.1\|651189_652056_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	8.98931e-73
NZ_CP019600.1\|WP_047101595.1\|638052_639048_-\|lactate-dehydrogenase	gnl\|CDD\|240661	cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains. This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	3.70502e-158
NZ_CP019600.1\|WP_012670287.1\|634025_635930_-\|transpeptidase-family-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	2.53133e-101
NZ_CP019600.1\|WP_012670299.1\|657752_659108_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	5.86101e-08
NZ_CP019600.1\|WP_047108458.1\|641117_642812_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	6.89025e-87
NZ_CP019600.1\|WP_012670286.1\|633105_634008_-\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	6.40811e-45
NZ_CP019600.1\|WP_012670300.1\|659248_659911_-\|L-fuculose-phosphate-aldolase	gnl\|CDD\|181226	PRK08087, PRK08087, L-fuculose-phosphate aldolase.	6.82604e-102
NZ_CP019600.1\|WP_047111354.1\|642882_645474_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.04288e-55
NZ_CP019600.1\|WP_047117610.1\|652163_654578_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	6.38856e-55
NZ_CP019600.1\|WP_020063812.1\|654937_657511_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.53379e-56
NZ_CP019600.1\|WP_012670291.1\|640387_641080_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.000236458
NZ_CP019600.1\|WP_101638446.1\|648567_650955_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	8.16293e-49
NZ_CP019600.1\|WP_020063751.1\|636330_637956_-\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP019600.1\|WP_101638448.1\|662324_664379_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	4.51483e-17

>NZ_CP019600.1|WP_047111354.1|642882_645474_-|BspA-family-leucine-rich-repeat-surface-protein
MKKYKPETKTELKKLVFTDGIKLNCVDTSLITDMSKLFYESKRKDFEGIEDWDVSNVTNMDMMFAYMGYNALVRYSNIDFDHDLSNWNVSKVKSMNNMFAYCSNFDQPLDNWDVSNVEDMSFMFCGAKEFNQPLNSWNTSKVKNMRGMFEECEFFNQPLDKWDTSNVEDMSNMFIRAKRFNQPLNTWNTSKVKDLSSMFAYCDVFNQNINDWDVSNVTNMDSLFRQCDKLNQPFDKWDTSNVVNMEKTFFSCTKFNQPLNSWNVSNVENMDMMFYMAQSFNQPLDKWNTEKVITAVGLFRFAYKYDCYESLEHWNLDNLQEVGIFCDDEDKLHTRLKVYMQAFYPKEDYITITKFNVKEIYDLIAKDKNRRIVRLRKRIESDFSSELSFVTKDYNFTTIEKAEKYAQKKYNAKKEDKKLEFIKDCHVLVKDKSREVDITVIKYIYSEYLSLKRTINRLEKIDNIVNLLDFESFLKFVRDVYLENKDKEIAGFLYAMYGGDEALKEISELISLGIDSKVFLIMIKFNIESRYAQSLLYEIYSDTKTAEIRREAGRMINELIEKINIGYTEFRLRCTPNYGFNSQGEKILNEDYKLIVNSDYSLTLFDIKNNKELKKTPQNLDKELKEEIKELRKEVQKFINHNSRILSITLIDGDIYSYDLFKEVFIDNYLMNRFASALIWNLYDKDKNFITTFRYSADGSYSNCEDEEVKINADNFISLATPAEMDDDTINKWRKQLEDYELVQPINQLAVIKLDKNNLKKEIKKIKNIEASYGAFKFFAKKYDMYTNDVVGYNETITYTFPANDGDIFTISAKVDADTEYDEPVDITINFQKSENKEEISKRFVYSFLIFMIFDFRLTDLFS
>NZ_CP019600.1|WP_047108458.1|641117_642812_+|DEAD/DEAH-box-helicase
MDKNAPLIVQGDGTILLDVSTKHFEEIRNFMLVFAELVKSPEYIHTYRITLVSLWNAASLNYTSEQILNFLRKYTSYEIPKNIVKQIETSIEKYGRIKIIKEDDKYYLISEDKNIIDEILHYKLMTKYIKSEINKNKLEIDATYRGHIKLALINIGYPVQDLAGYKTGEEYHFHMREKLASSGDDFALRDYQKNSVDAFYADGKPEGGAGVIALPCGTGKTVVGIAAMHKTQTKTLIIVTGVTACRQWRDEILDKTDIPPEDIGEYNGLNKEIKPITIATYKILTYRKNKESPFVHFELFFQHNWGLIIYDEVHLLPAPIIKLTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIPWRELEEKKFIAEAYCYDIRIPLDDSHRSDYVISSDKVKFRIASENVLKYTIVKKIIEKLEGKNILIIGQYLDQLNEMKKRTGYTIITGKTPQSERDIIYKKFKTGEIKILIVSKVANLAVDLPDANVLIQISGTFGSRQEEAQRLGRVLRPKKGENKSYFFSIITTDTKEEDFAHKRQLFLTEQGYHYELLDKDSFEELEFNN
>NZ_CP019600.1|WP_012670291.1|640387_641080_+|tetratricopeptide-repeat-protein
MSENTNKLQKNAELIFTYIYNNRIIFISGFVLIIVIIAGILLYKANIESQDASSNVEFESALALYNVYQNAQLPAEQLNDPALIIDITSRFQKVYNAAKGKNLKLRSAYALGCVYYDIDNFKEAEKYYQEVANSRGFYLQETAMYNLANTQIGLSNYTQAASTLENFVKVYPKSYLLPQATLTLSDVYLSQNDKTKALNVLKSWATKNTNNIEYLSLFRETISLIENNVY
>NZ_CP019600.1|WP_047104371.1|639171_640200_-|hypothetical-protein
MSQQKINQNDEVLAIKILAEYSDLNKYIYLVFFIDKYSSSLIDVAFVISDDKKLLIFLNAYTDLLELYKHIKIYNKLNNEKNTYFDKFNDIISNIFEEGKNINNIIIYQSNNNSISIIDVFASAMNRFMDFHIGTFDINSSIIDINSVRLAIEDVNKEMEATDSMHAAYQNTSDSTSSENTSTEEVHAPTYKLINASFVVDPIGGKSINDIVPGDKVMVSINSNTVEENIIYLELKGKKDKYSKYLVPAEVLEKTVEEKSIKILLKLIDGYCCFIEEIEPIKLKLFNPEKDVYTEPSVEDEDKGFFEKLFSKVNTFKLMMFGLGAIIIFVFIAIIYVFFFQT
>NZ_CP019600.1|WP_047101595.1|638052_639048_-|lactate-dehydrogenase
MSIVVYSFLDDESEFFKLMEKKYNTKFTLHKHHLNIDNVKDAEGFDSIVFNARDAITDKVLDKLKEYGVKYMSTRSVGYDNIDIDYANKIGIKIANVPSYSPNSVSEFTILSLLSLIKNYNNLIINGYNRNYTRTGLVAKEIRNLNIGVIGTGRIGSLTVKHLKGFSPKNIFVYSRTEKEEIKQYAKYVSLDELYKNSDAIIYHIPYNKETENMICKDSINKMKKGVYIINVSRGGIVNNKDLLDGLKSGHIGGAALDVYTNEIEYVNKNIKDIVLKDEIIEELFKMDNVIITPHFAFYTDEALLNMVSISIDNIFEFKNTGKCVNQIKNI
>NZ_CP019600.1|WP_020063751.1|636330_637956_-|peptide-ABC-transporter-substrate-binding-protein
MKSRKIFLSFIMGICLVLLFASSCSKKDNANDKGIIVNLSVEPKTIDPSLNAQIYGVIYISHVFEGLTVRDRNNKIVPGVAESWEISDDGKIYTFFLRTNSTWSDGKPVVAEDFVYSWQRQVDPKVASEYSYQHEPVKNAMAITRGELPVDSLGIKALDDHTLVVELEAPTAYFLEVIAFPTFAPLRKDIIEQYGDKWTLSPETYIGNGPYVMSERNIDENIIMVKNPNYWNADTIVAEKITFVFMQNGAAAVAGIKDGSLHMAYEPPQQDIPTLLDEGLVQIKPLIATYYYPINVTNEYLKDPRVRKALSLAIDRNYIVEQVTKGGQKPAGGWVPYAVNDVNGDFRINGGDFYDISKDGYAKNVEMAKQLLAEAGYPNGEGFPVIEFKTDPGNHVEIFEAVQQMWKEHLNIDSTITQIDNALLGQTLLEKNFMIGRLYWSADYSDPMSMMSLFTSYNTQNNGGYSNKKYDELIAQAMSTDDNNIRMQAMHEAERILIEEDMGAIPLYFFTEPLLVNPKLKDVVYNPLGFHKFFYAHLEQN
>NZ_CP019600.1|WP_012670287.1|634025_635930_-|transpeptidase-family-protein
MNDSRVKRLYLFLLCFFIGTIAIFIQLFNLTIKERKSLSSLVGLDRPRGTIYDSKMRPLTINIPAYTIYLDTESVSLDGNDKTDINEAYSQIFNIINITKEKFAELLNTKRRTIMLAQNINLDSYKKIKEIKDKYNVKSIYGIESYKRFYPYKDVFAHVIGYMNKTETEGYAGLEATYEALLSSENDNPKDIVLTLDRDVQTIVRNEVLKTVAEKSPQSVTVIVSDVNTGAIVADYSYPSFDPNNPFIYVNNERMDRSIMSTIYPGSTMKIFAELAAIEQGVVNSDEVFHCKGYYDYSRQTRIHCDYPHGDVAFNDILKYSCNFAVVTIAERIDNKFFYDYLKRFGFGEPTGVGPYKNEWSGIYHHLNKWHRFSKGYLAIGYDLSVTPMQIAASYLPLLNGGWKVPMHVVDSFYDGIEKISATNNLKRTRIIDEQYSQIARVLLRKGVESGSTGHRANLLNIDVVGKTGTAITEVYRNNESEKPEKYYQSIFVGGFPLEDPKISILVLLDDPQGQGSQGAGRVAAPLFAKIANQIIPYLGLIDGEIYTINTNDFLSLIPHSSNITNNIMPNLTDLSLRDALNSISYIVSNNNAKIMIQGEGYITDFSPQAGTLVTNNSIIRLSLKAPIKEQENQ
>NZ_CP019600.1|WP_012670286.1|633105_634008_-|carbohydrate-kinase
MFKIVSFGELLYDVYDNVSVIGGAPFNYSLQLSRLLNKDDKLKFITALGDDDYSKDAVSFIDNENIDKSLIQILKDYDTGKATVFLNEKKIPDYIIHENAAWDNIEYNNDIENALKENYDLFYFNILSQRNEKSYNTLKTIFKNINAKYRVCDVTFRKNYYTKEKIKESLEFINILKINDDELAVIKELFYPSLQNDNEVLLKAINKDFNIDYIFLTLGAAGASVLYNNEYIFNPSNKVNVIDTVGAGDSFCAALSYAILRGLDINNILKFASSVSEEMVKVKGGTARYNIEKVKSQFNL
>NZ_CP019600.1|WP_012670285.1|632551_633103_+|hypothetical-protein
MKFYFTIIIFILITSPYSFAQNNYNLNIKFRVIEKFDKILSSDNKEYVFYIDANYIFSDEGKTIYSNNIYNIQNTLNDLERQENEAATQAEKNSINQNIRIYKALLTYNTPPKKFITLLINRQIHQYISKYPSSYIDDMLNNNLQAFYDDIRNNIVYNEKYTGKFTSIKFLTKDKFKYYTGRT
>NZ_CP019600.1|WP_020063750.1|631352_632525_+|hypothetical-protein
MKHCIKVILFLILFSYSVIYSKPSDKIKFEAGELTELEYDFFTKVDNGETNDLELHYDGFIIASGITDEEEFKFYRQKLDDIRNFAKKELSSYTKEGAYAFGKRLLNWLYTSGTLKQYFETSTLFQDLIYKGEYNCLSSSILYSLLYKEFGFNVTGVLTSSHSFCTVYADGKSIDVETTLSKGFDPGQKEIRNTGNSTIVTFVPQGNYRDRNNVDILTLIATLYPNSISLKKIEKDLEKQLVMAKKAYYLSPNTKMYNDNLVNAYNRLALDYLNKNNFESAYKTLEEAYMFDSNNAMTKNNRIHYYNTIGTSYLSKKDFPNAIEIYKTGISDIGEGADVLKRNLKVSYYNYAVTEYNQRRYNNASVISEEALKLFPNDRDFIRLLSSIPK
>NZ_CP019600.1|WP_101638446.1|648567_650955_-|BspA-family-leucine-rich-repeat-surface-protein
MNKYKPATKEELKNLVFTDSVKLSDVDTSLITDMSYLFYKSERKDFEGIEDWDTSHVEDMSFMFFWAIEFNRTLNSWNVSNVRNMSGMFQAAMKFNQPLYKWNTSNVKTMSFMFNYAKSFNQNINNWNVSKVEDLSYMFCECEVFNQPLNDWDVSNVKTMEGTFRRAYKFNQALYKWNTSKVENMHEMFVQCKAFNHTLNTWNVSNVKNMEAMFCDTLSFNKPLDKWNTKNLKKIDSMFKYAKNYDCYESLANWDLNKMLNMTDFCDDKEKLPLRIRAYLQAFYGYNQNYLNITKDNVKEIYDFISKDTNKKIVALRKKLESDFSLVLSSLTNDFKTIEEAEKYIENNYNKKDDKKVSFINNNYKVLIKDKSREVNIKVIKYIYLEYLSLKRDVKRLVKIDNIVNLLDKESFIKFIKNIYDETNKETSVFVYGIYGGDEALKNIYKKSLDTKLSLIIIKLNNQSKYALKLLYEIFMTTKKTEVRLEAEKIINELIEIMNIDYNEFRLRYATDFGFNSKGEKELSNNYKLILNSDYSLSLFDIKNHKELKKIPRSLDENLKKEITKLRKEIKKFIKNNSNLLAITLINGNKYSYDIFKDIFIDNIMMNKFASSLIWNLYDKDYNFITTFRYSGDGSYSNCEDEEVKINDNNFISLASPIEMDDYTINKWRKQLEDYEIAQPLQQLTVIKLDKNNLEKEINKIKNIEASYGTFKYFTKKYEMHISNVIGYDGIITYSFTSNDEDIFTMTSKIQGEYDEQINITIDFKKSKNKKEISKRFVYTLLVLIIWDFRLTDLF
>NZ_CP019600.1|WP_047101600.1|651189_652056_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MRNNLNTKKYFNPLNDYFVRYLFTDKGSSESILLDFINSIMINANMKTFRSVEILTPFNLKKNKNLKETIVDVKCITQNGAVVIIEIQLQGNSRFPERILYYWAANYSKLLKHGERYDELTPVISINLLNFNLDKSKNIHSCYMLYEMNNKKLLTDHLQIHIIELKKFKKNILTKDLNCWLKIFTSKNLEASMSEIVKEKPIMEEVQKKYNNFVKSKLMMMEYEKKEAYLYGNQIMLDEERRLGKEEGIKEGIEKEKSSLAKNMKKENIDVNIISKVTGLSIEEINKL
>NZ_CP019600.1|WP_047117610.1|652163_654578_-|BspA-family-leucine-rich-repeat-surface-protein
MKKHKPATKEELKNLVFTDGIKLSDVDTSLITDMSELFQKSQRKDFEGIEDWDTSNVENMSWMFRECFSFNEALEKWDTSNVINMKGMFSLAKSFNQNINNWNVSKVIDMSYMFNACDLFNQPLNDWDVSNVKTMEAMFHSALSFNQPLDKWDTSKVENMHEMFCRCKQFNQPLNSWNVSNVKTMEAMFYSADSFNQPLDKWNTKKLSKMYSMFKYTDSYDCYDSLANWDLSKVSDISDFCANYERFYEKLPLRFRVYMQAFYGTHKVYVPIENNEEYDDDEYDFISEEYDLVSRDYITITKENVREVYNAISKDTNKKVMALKKKLETEYSKELSSVTDDYNFKTIEEAEKYVENNYNKKDDKKVSFINDNYKVLIKDKSREVENKVLKYIYLEYLVLKRDIKILTQVDNIINLLDEESFIEFIKNVYNETNKETAAFIYGIYGGDKAIKNIYKKEKDTKLSLLIIKLNIESKYALRILHEIYSNTKKSEVRYEAYNLIDEVIKKMNISYNEFELRFSPDFSFNSKAEKVLNEDYKLILNSDYSLSLFDIKNNKELKKIPQNFDEDLKDEITKLRKEIPSFMKNTSSLLAVLLASGEKYSYDLFKEIFIDNAIMNRFASSLIWNLYDKDDNFVTTFRYSGDGSYSNCEDEEVKIDDNRFVSLASPIEMDDEIINKWRKQLEDYEIAQPLQQLTIIKLDKDNLKSELEKIDNSEIAYGTFKAFGARYGMYTEYIGYDVVSSYSLKSKNGDTFSIYANVNSKTDFHDRVKIDIYFTNENGEEVSKRFIYTLLVLMIWDFRLTDLF
>NZ_CP019600.1|WP_020063812.1|654937_657511_-|BspA-family-leucine-rich-repeat-surface-protein
MKKYKPETKQELEQLVYTDGIKLYDVDTSLITDMSELFHNSTRKDFEGIEDWDVSNVEDMSYMFAHMSYDSYENRSKAKFNHNLNNWNVSKVKHMSFMFYYCQDFNQPLDKWDVSNVQDTFRMFDNCKKFNQPLNSWNVSNVTNMSGMFQVAESFNQPLDKWDVSKVTTMRAMFNYAKAFNQDISNWNVSKVEDMGYMFSICVNFNQPINDWDVSKVKTMEGMFRSAFKFNQPLDKWNTSKVENMNQMFNEALKFNQPLNSWNVSNVKTMECMFRGTEAFNQPLDKWDTKKLKTMFGMFDFAEGYNSFDSLANWDLNKVSEMSNLCFKRYEELPLRIKAYLQAFYGSYKDYLTVTKDNVKEIYDLISKDTNKKVLSFKKRLESEFSEELSSVTDNYNFKSIEEAEKYVENNYNKKDDKKVSFINDYKVLIKDKSREVENKVLKYIYLEYLLLKRDVKKLVQIDNIVNLLDKESFIKFIKNVYDETNKETAAFIYGIYGGDEAVKNIYKKEKDTKLSLLIIKLNIESKYALRILYEIYSNTKKSEVSYEADKLIDEVMEKMDISYNEFQLRYSSDLGFNSKGEKELNKDYKLILNSDYSLSLFDIKNNKELKKAPQNLNEDLKEEITKLRKEIPYFMKNTASLLAVLLASGEKYSYDLFKEIFIDNAIMNRFASSLIWNLYDKDSNFITTFRYSGDGSYSNCEDEEVKINDNSFVSLASPIEMNDETIDKWRKQLEDYEIAQPINQLTVIKLDKDNLKSELEKIDNLEIAYGTFKAFGERYEMYSEYIGYDVVKSYSLESKNGDTFTIDADVNSKTDFHDRVKIDINFDNENGEEVSKRFIYTLLVLMIWDFRLTDLF
>NZ_CP019600.1|WP_012670299.1|657752_659108_-|NAD(P)H-dependent-oxidoreductase
MNILVINGSPKGNNSITLQTLLFLEKLFIEHKFEFLNVGQKIRYYEKNFNEIKDAFEKSDVIIFSYPVYTFLVPYQLHRFIELLKENNIEVKDKFATQFSTSKHFYDVTAHKFLEENCLDLGFKYIKGLSADMEDLMKKEGQDDAINFFNYLIFSIENNLYTQNINLKYKDKIIYKRRFNNNIENKDGSKDVLILSNTSKDDENLINIIEDFKNIFPYKTREINIREYNFHGGCLGCFGCAITGKCVYKDGFDDFLRNEIQKADAIIYAFTIENHYTHSSFKLYEDRQFCNGHRTVTEGMPIGYIISGDYDSEYNLQTLIESRAEVGGNFLTHIANDYNKDIYNELEKLSSIMKYAIDNKCTRPKNFYGVGGMKIFRDLIYVMQGLMKEDHKYYKKHNIYDFPQKQRMKMLQMKLVGALISIPSVQKKMKNKMNEYILMPYKKIIDNAKHK
>NZ_CP019600.1|WP_012670300.1|659248_659911_-|L-fuculose-phosphate-aldolase
MSDNRIDLGQQIIDACLNMRKDGVNQGTSGNISLRYKDGMLITPTSMPYEIMTPDDIVFVDGNGNPEPNKKPSSEWRFHLSILKDNPSFNAVIHNHAVYSSMVSILNVDCIPAIHYMVGVAGGKIIPCAEYATYGTQELCDNISKVMKGYKACILKNHGLLAADETLEKAYHVMMEVENLARLYIGVRSIGDYKVLSDSEMDIVLAKFNNYGLNVEHKNK
>NZ_CP019600.1|WP_101638447.1|660173_661793_-|gamma-glutamyltransferase-family-protein
MDFYDNTYSSKRNVVFGRNIVSTSNILASQAGLEILKKGGNAIDAAIATAAALTVVEPTSNGLGGDAFAIINFENNLYAINGSGFSPKNLDVDKILSLNLDQMPTYGLLPVTVGGIPATWATLVKKFGKLKLIDVLEPAIRYAKEGYAVQPQVALDWKESYYVYLKESDKLKREEFKYWFNTFTFNGRTPELGEIVKLPYHAKTLEDIGNTNAECIYRGEYADKIDAFMKKYGGYLSKEDLNEYYPEFVTPITTNYRGYDIYEIPPNGHGITVLMALNILSNFDLKDLTPLESTHYKIEALKLAFIDTKKYVADIYHMKTSIEEMLSKEYAMKRASLIRVNKALEPINHIFSSGDTVYLATADSYGNMVSYIQSNYCAFGSGIVIPETGIALQNRGANFSLDPNSDNFIAPHKKPYHTIIPAFICKDSKPYAALGVMGAFMQPQGHLQVMSNLIDHDLNPQAALDKPRWQWVGEKNIELEYNFDDELFSELSSLGHNVTKKPHITNFGYFGRGQVILKNNKDVYFAGCDGRTDSAAVAF
>NZ_CP019600.1|WP_101638448.1|662324_664379_-|tetratricopeptide-repeat-protein
MGKLYSLEEIEKIINDFIVHSLDEDYEKITEIISMFNESLTEYEDYNKALFLLGMAYYSTWQFECIDIFKKAAVLEKDNDKYWYFLSKSYFEKAKYDKSKKIIKKTLKLNTNDSAYWFLLGRIYFISKDYKKSLRFYKRAMMINNTNIVDRENSIYHYIRYIAENYFQLKKYNKVIEYYEKIDKEYDFNEYDYMYLALSYKKIKNYDKAIENFKKALDINNRSYLYNEESPCINHLAKTYIKIGKYREAIELYKDFIKKESNGKGLVLIPYSLNGIDDYKYLISAFNELVEEEPNNLNYYNDLFSIYKFNLNLYDKAIEVYEKYISNNSNIESDIYEKLSSLYSQVFRYDKAIETYNKLIELNGENETYYSSLGELYNIIGDYDKAVYFYEKTINIENIYQNTFEEICILLIDLYSKLSRFDDRNALMSRVYNYYLNEEDYKNIANLYIHIGEKDKAIEIYKKIIELDIYNNIDCTNYYVKIADLYKEINQENTAKEYYQKAIDIYENKLKTDDSGYYLGLLCDLYMTIGNKDKAVLYYKEYIEMLIKESKAEMENEGTDHISWSKALEIAASYRKIGDTENAIKYYEYALYDNADLEYCYDSIAEIYDEINEKEKSKEYYKKSIELHKKYFETHSYHCDSLKEMAKLYLKIDDKEKAEECYKKVLDINIYDNEAKEHLEKLNI
>NZ_CP019600.1|WP_020063817.1|664537_665179_-|Pr6Pr-family-membrane-protein
MTKTNFSIIYKIIIIIIGSFAVLHGFFYDNFKLDIETAYYFTYQSNILVIVYFILDIINIIKKKETFYPRFKGAVTMSITVTFLVYHFLLSPTADDYKGLYYIRNIILHYILPIMTIFDYIIFDKKGIYKIVDPLLWLIIPFVYFAFILIRARIGSPFSDGSYYPYFFVDIDKYGLKTVLRNVFFITLFFDFLGYIEYFIDRFFNKVISKHNK
>NZ_CP019600.1|WP_012670304.1|665180_665333_-|hypothetical-protein
MGDYTDTTAAVTRGLAALYYGIDNIPSKWIDTLVNKELIINICGNYIYWN

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Crispr_ID: NZ_CP019600_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019600_3

1173753-1174085

Orphan

Consensus_repeat	Method
AAAGCTGAGGCAGATGCAAAAGCT	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP019600_3

>merge|NZ_CP019600|3|1173753-1174085|CRISPRCasFinder
AAAGCTGATGAGGCTCTACAAGCTGATAACTTTGCAAGCGTACAACAGAATGTTGCTGCTGCTCTTGCCGGTATAACTAAAGCTGAGGCAGATGCAAAAGCTGCTGCTGAAAGAGCTGCCGCTGCTGCTAAAGCAAAAGCTGAGGCAGAGGCAAAAGCTAAAGCTGCCGCTGAAGCAAAAGCTAAGGCTGCTGCAGAGGCAAAAGCAAAAGCTGAGGCAGAGGCAAAAGCTAAGGCAGAAGCTGAAGCTAAAAGAAAAGCTGAAGAAGAAGCTAAATTGAAAGCACAACAGGAAGCTCTTGCTAAAGAAAAAGCTGATGCTATCGCTAAAGCT

>NZ_CP019600|3|3|1173753-1174085|CRISPRCasFinder
AAAGCTGATGAGGCTCTACAAGCT	GATAACTTTGCAAGCGTACAACAGAATGTTGCTGCTGCTCTTGCCGGTATAACT
AAAGCTGAGGCAGATGCAAAAGCT	GCTGCTGAAAGAGCTGCCGCTGCTGCTAAAGCA
AAAGCTGAGGCAGAGGCAAAAGCT	AAAGCTGCCGCTGAAGCA
AAAGCTAAGGCTGCTGCAGAGGCA	AAAGCAAAAGCTGAGGCAGAGGCA
AAAGCTAAGGCAGAAGCTGAAGCT	AAAAGAAAAGCTGAAGAAGAAGCTAAATTGAAAGCACAACAGGAAGCTCTTGCTAAAGAA
AAAGCTGATGCTATCGCTAAAGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019600.1\|WP_012670746.1\|1166423_1167224_+\|DUF4912-domain-containing-protein	unknown	unknown	gnl\|CDD\|379808
NZ_CP019600.1\|WP_012670760.1\|1185319_1185556_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371814
NZ_CP019600.1\|WP_012670747.1\|1167297_1169043_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|260116
NZ_CP019600.1\|WP_020064494.1\|1178674_1179004_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012670742.1\|1162986_1163202_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_020064488.1\|1163863_1165543_+\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NZ_CP019600.1\|WP_020064487.1\|1163445_1163757_+\|phasin-family-protein	unknown	unknown	gnl\|CDD\|226447
NZ_CP019600.1\|WP_101638494.1\|1181514_1182837_-\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|273453
NZ_CP019600.1\|WP_020064490.1\|1172503_1173124_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012670759.1\|1184284_1185007_-\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|225390
NZ_CP019600.1\|WP_012670749.1\|1170822_1172223_+\|NADPH-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|183780
NZ_CP019600.1\|WP_012670756.1\|1179653_1181498_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP019600.1\|WP_012670761.1\|1185581_1185953_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP019600.1\|WP_008727936.1\|1169074_1169266_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP019600.1\|WP_012670745.1\|1165730_1166264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_020064493.1\|1175377_1175941_+\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|372824
NZ_CP019600.1\|WP_008722679.1\|1179000_1179573_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP019600.1\|WP_012670753.1\|1176034_1178521_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NZ_CP019600.1\|WP_020064497.1\|1182902_1184270_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NZ_CP019600.1\|WP_012670748.1\|1169663_1170578_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188641

Protein	Function_ID	Function_description	E-value
NZ_CP019600.1\|WP_012670746.1\|1166423_1167224_+\|DUF4912-domain-containing-protein	gnl\|CDD\|379808	pfam16258, DUF4912, Domain of unknown function (DUF4912). This family consists of uncharacterized proteins around 160 residues in length and is mainly found in various Clostridium species. The function of this family is unknown.	2.09443e-38
NZ_CP019600.1\|WP_012670760.1\|1185319_1185556_+\|hypothetical-protein	gnl\|CDD\|371814	pfam11950, DUF3467, Protein of unknown function (DUF3467). This family of proteins are functionally uncharacterized. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.	0.00277837
NZ_CP019600.1\|WP_012670747.1\|1167297_1169043_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|260116	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. The 4-hydroxy-3-methylbut-2-enyl diphosphate (HMBPP) reductase (called lytB or ispH) is the terminal enzyme of the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway, one of the two metabolic routes for isoprenoid biosynthesis. The MEP pathway is essential in many eubacteria, plants, and the malaria parasite. LytB converts HMBPP into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).	6.43952e-104
NZ_CP019600.1\|WP_101638494.1\|1181514_1182837_-\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|273453	TIGR01125, Ribosomal_protein_S12_methylthiotransferase_RimO, ribosomal protein S12 methylthiotransferase RimO. Members of this protein are the methylthiotransferase RimO, which modifies a conserved Asp residue in ribosomal protein S12. This clade of radical SAM family proteins is closely related to the tRNA modification bifunctional enzyme MiaB (see TIGR01574), and it catalyzes the same two types of reactions: a radical-mechanism sulfur insertion, and a methylation of the inserted sulfur. This clade spans alpha and gamma proteobacteria, cyano bacteria, Deinococcus, Porphyromonas, Aquifex, Helicobacter, Campylobacter, Thermotoga, Chlamydia, Streptococcus coelicolor and Clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. [Protein synthesis, Ribosomal proteins: synthesis and modification].	4.56288e-148
NZ_CP019600.1\|WP_020064488.1\|1163863_1165543_+\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	3.58055e-131
NZ_CP019600.1\|WP_020064487.1\|1163445_1163757_+\|phasin-family-protein	gnl\|CDD\|226447	COG3937, COG3937, Uncharacterized conserved protein [Function unknown].	4.35738e-05
NZ_CP019600.1\|WP_012670759.1\|1184284_1185007_-\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|225390	COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane].	8.6369e-12
NZ_CP019600.1\|WP_012670749.1\|1170822_1172223_+\|NADPH-dependent-glutamate-synthase	gnl\|CDD\|183780	PRK12831, PRK12831, putative oxidoreductase; Provisional.	0
NZ_CP019600.1\|WP_012670756.1\|1179653_1181498_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	5.60235e-119
NZ_CP019600.1\|WP_012670761.1\|1185581_1185953_+\|hypothetical-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	0.00183615
NZ_CP019600.1\|WP_008727936.1\|1169074_1169266_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.38485e-20
NZ_CP019600.1\|WP_012670753.1\|1176034_1178521_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP019600.1\|WP_012670748.1\|1169663_1170578_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188641	cd00954, NAL, N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL). N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.	1.4049e-111
NZ_CP019600.1\|WP_020064493.1\|1175377_1175941_+\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	2.47761e-37
NZ_CP019600.1\|WP_020064497.1\|1182902_1184270_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	1.68362e-20
NZ_CP019600.1\|WP_008722679.1\|1179000_1179573_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.34252e-36

>NZ_CP019600.1|WP_020064490.1|1172503_1173124_+|hypothetical-protein
MKLKLQIGFITLIALMLISCGGLPTKEYERVTALRDTVVNKYPEIQTFAQEDFDIAEKGYAEADIIMKEENKDEAEKAKELLLTAETNYNLVLDKGLPPYSEILKKQTDESATNAIDIKASVMYADEFAKADTVYQEANAMYTAETKDYRIMVDKLYQAKVAYTDLYNKTKEQFDRSDEALKLVKERLAQLEKMMQEIEAFEQEQN
>NZ_CP019600.1|WP_012670749.1|1170822_1172223_+|NADPH-dependent-glutamate-synthase
MPPRSKLGEIPRQEMPTRSPEERRKDFKEVPLGYTEEQAYQESLRCLDCKVPHCMEGCPAKVKIPEFIGLIAEKKFLEAAKKIKETNALPAACGRVCPQEEQCEQRCVVGKKFEPVAIGKLEMFVADYERKHAQHEDLKVEKNGKKVCIIGAGPAGLACAGDLIKLGYDVTVLEALHTIGGVLMYGIPEFRLPKELVAHEVENLKKDGVKFRINEVAGISLDFEDLRKEYDAIFLGTGAGLPAFVNVPGEHFCGVYSANEYLTRVNLMGAYKFPEVDTPVIRHKKVAVLGGGNVAMDACRTAVRLGAEKVYIIYRRTEKELPARLEEIHHAMEEGVDFRFLRAPLEILGDENDNVIGVRTQVMELGEADADGRRKPVAVEGQTEDIEVDAVIVAIGTTPNPLIARKVPELQTTKKGTYVIDEETGATSMEGVFAGGDAARGAATVILAIGDGKRAAAGIDKYLSNK
>NZ_CP019600.1|WP_012670748.1|1169663_1170578_+|dihydrodipicolinate-synthase-family-protein
MRNLDKYKGIIPAFYACYDEKGDISPERVKKFTQHLIDKGVNGLYVGGSSGECIYHSKEERKLVLENVMEVAKGKITIIAHVGCNNTADSAELAAHAEKLGVDAIASIPPIYFHLPDYSIADYWNDISAAAPNTDFIIYNIPQLAGVALNVNLYKKMRENPRVIGVKNSSMPVQDIQMFKDVGGDDSIIFNGPDEQFVAGRLIGADAGIGGTYAVMPELFLAANDAVNKCQFDKARDIQYKIDRIIYAMCECHGNLYAVMKAILKLKGLELGGVRKPLSNIIDEDKAKIEKCAKMIDDAINSIK
>NZ_CP019600.1|WP_008727936.1|1169074_1169266_-|50S-ribosomal-protein-L28
MARVCEICGKGKQNGHSVSHSNIKTKRSFNANLQNVKIEVNGSVKKALVCTKCIKGNKISKAK
>NZ_CP019600.1|WP_012670747.1|1167297_1169043_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MNVDIGKFAGFCDGVKYAVENTFSQASKKNSDIYIDGHLIHNPQTLDMLENIGVKTYEDDEDMSVLDGKTVIVRAHGISPKRREALSSHAKKIVNLTCKYVAKIQGLVKKYSSLGYRVIVIGNPVHPEIVGVCGYADDVYVVYKDEDLNKLPNDSKKALIVAQTTLQKSAFDKFVAQIQDKYKDTEIIIKNTICAATEQRQNEVLEIAKRNDVVLVIGGSESSNTRNLYNIASSIKPAFYVEYKEDLEKIDLSNYKNIGIMAGASTPDWLIEDIAQTIKDKYATNFYRFISRIFDFLNYGYIFFSVGAFLMSYAVYDILSQPFKYQIGIIIALYYLYMSLENGYSNYTIKISDKRRYLFYQEYKTFFRFLILMSAVLMFYFAYKINVGILMLSILSSLLGMGYNISFENKSRFESSFFFRLFKKLIPFKAIVISVAVTVLLNGSIFILHRDILKEKLFLYLFSTFLVFLFMFIRQALIEIKFSQSDKIAGAVTLTTYIDSHKLAFITGIIPIVLALFMLVGIIIGKFPLEINKLKYCIPIVYSSIISFVVMKKKIITSRHLFSILIDSPLYILFLAALINI
>NZ_CP019600.1|WP_012670746.1|1166423_1167224_+|DUF4912-domain-containing-protein
MATKKTEKAAEDTIKKTAAKKSATTKKADEEKAEGAPKKAAVKSAAAKKTTSAAAKKTTAKKAQTKKKSEKEIEEEIEEIKEEAKKDEYIPDEVDIVRELPDRYKETKLVLMMRDPEWCFFYWDISDEDINYHSLKGKRISVRIFHVFGYDITNGEIHKEIEVNYIYGDRYVNLAMPHAYFIGELGYYDENNRFIVLARSNMIYAPRDSMSNVYDEEWMVNEEIIKLLKSPKALRESLSSATIFELIDLRRNHLAGSSSSLFMKKN
>NZ_CP019600.1|WP_012670745.1|1165730_1166264_-|hypothetical-protein
MNKIIICLLFICNIIAFSQDDFTVPITPSKDQELDRVAGYSGTLSEFDGSMNAYTKLKAYINILDSKGMAALKKHPSYPKLGDVYMYGAIYLSREYKEDKIIELYKKALELRADPNSNYQLATMYKKKFDDAVKKNDANKEKEYGKNVYEYLNKYIVLSGNKSSKYKEILEYFSAYK
>NZ_CP019600.1|WP_020064488.1|1163863_1165543_+|AarF/ABC1/UbiB-kinase-family-protein
MNNMKSINRAKEIISIIIAYGFRDIIAVTPILKIIKNPIDKINIKYKGVDLRKYTKAERIKMACEELGTTFIKLGQILSNRSDILSKDITTELSKLQNHVKPFDENTAKSIIEEELGGKIEDIFESFELTPKASASISQVHTAVLKNGEKVAIKVKRPNIEENILTDIEIIVWLSNIIEKYNEEFALMQPQKLISAFKAQLLQELDFNFEKNNTLKFAKFFKNNKNIKIAKVYDEYSTKNILTMEYIEGIKISDIAEDDTRYDRKKLVSIGVDAVLEQIFMLGFFHADPHPGNLMALENNVLCFLDFGMIGFIPPNSKDAFSSLIMSISSADYLELSKSILDLCYHGEINNIDEFNMAIFVLVSKYVDMPLDNINIEDVFNELIGIIREFRLTLPSNIMLLIKSLIVLEGVARNLDKDVKLIEHIKPFAFRYVKEQMKPDNILKQFKKLFYDYSYIIKEFPSDLEHLVSVIKQGSVKIQLEHKKLESLASTLDGLADRLSYSIVLASLILASALIITSKMPPLYHGTSVIGMIGFALSAIMGFIMIISRFIKKYVKKNN
>NZ_CP019600.1|WP_020064487.1|1163445_1163757_+|phasin-family-protein
MSLSDDIKSGFYSSIGMMLKGKEKLEEAAREFIKDKNVSAEEGEKFVKEMVNKANETKEDVSQFIDERVQKVVDKMGYVKKEEYDAMRKELDELKQSIKKDEQ
>NZ_CP019600.1|WP_012670742.1|1162986_1163202_+|hypothetical-protein
MDSDGVYKRVNINKVIKNIQKNNSDITESKAQEIAYIMIKELNKKVSSMVSDFENGEGDFMACYFDAIDKK
>NZ_CP019600.1|WP_020064493.1|1175377_1175941_+|DNA/RNA-non-specific-endonuclease
MRIYIYCIISIIFIISCQTNQVYNIKNDDDKSHFVKINRIEYLKPNIKYNINGTLYSTDKRSRIYKVIRKENLILSNAKRNNYAQKKVVELYGIKDHDQGGHIIGRQFGGSPNIDNLIPINKKLNIGEMRKTEMEWRESIINGDEINDIVIDIKYIYTNMRPNIIIINYDIEKDYTNYRIQKIFTND
>NZ_CP019600.1|WP_012670753.1|1176034_1178521_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MFQFHLTSKAKKVIELYAQEEAKRLNHDMVTPEHILLGLLHESEALATRVLMRLKIDLDRLKLELESAMVKSSTTKVFGTLPTAPRVQKLISRSAEEARALSHNYIGTEHLLLGLLREESGTAYNVLTSMGLELTILRQEILKMLGVAGSNISSMEQTSQEDNVKKVKTPTLDQFARDLTKMARDKALDRVIGRENEVMRVVQILSRRKKNNPILLGEPGVGKTAIVEGLAEKIVAADVPDILLKKRVLTLDLSSVVAGTKYRGEFEERIKNIVLEIKKASNIIIFIDELHTLIGAGGAEGALDAANMLKPALSRGEIQCIGATTINEYKKYIEKDGALVRRFQPINVEEPSIEDTIEILNGIKGKYEEHHKVKYTDEAINAAAVLSKRYIFERHLPDKAIDLIDEAGSRARLLNMTRPQEFKDLEKKIEELNQQKKRVVESQNFEDAAKIRDEITSLQEELSKKEEKWREEREKIETFIEEDDIRHVISEITNIPIKRLLNSESKRLIGMEEELHQKVVGQKEAISSISKAIRRSRAGLKTSKRPLGSFIFLGPTGVGKTALAKVLSEFMFGDSDALIRIDMSEFMEKFAVSRLIGAPPGYVGYEEGGGLTEKVRRKPYSLILFDEIEKAHPDVTNILLQVLEEGQLTDNFGRKVDFSNTIIIITSNLGARDIVKGSSLGFNAVGSEKDANDIKNFALEELKQNFNPEFLNRIDDIIVFHTLSKEDLKDIINIMLKELNEAIKERNIVINLSEEAKNYIIDKGFDKKYGARSLRRAIQKEIEDYVSTEILFGNIEDGDTINVDANDGSLIFSYDKSVKTENKELSKS
>NZ_CP019600.1|WP_020064494.1|1178674_1179004_-|hypothetical-protein
MKLHDMMQFKSKIEKKRHHFDLPSLPDREWQYMLQRAKMESMKKNEISPLYAFMSSARLSIALSTAILLVLALSLFYGNPNKDNSHKTNTASSSKTNINVVNVANSSFI
>NZ_CP019600.1|WP_008722679.1|1179000_1179573_-|RNA-polymerase-sigma-factor
MIVTKEKELLKDYELIEAHKKGDSEALDILLTRYKNYIFNLSYRFMHNYEDAMDLTQDVLIRVYKAIDRYEERNYFKGWLYRIISNTAINMYSKAYRRESPYLEKLEIVDDKRYNTEKEYERIYLQEKIYNASTKLKGKQRDVFILRYYENYSYKEISDILNISSDSAKSNYSYALKKMKSLLEKERTLL
>NZ_CP019600.1|WP_012670756.1|1179653_1181498_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MKKKKQENEPNSIEKEEKKSSSNYANREDAFRAYFEIVTKIVYTLNLISDRNDMTRRLSSNIDRALGYDDEMISNNEKIANNSNEVEILINSLKTDVRKISSFKKYNFNIERFISDKNLDLDERFILYSVLVYTIYGDSMSAISVRRILELITLNNDIYINKYHYFDNSSKLISSGIFNLSHEPYPSSGILEITNTLITFINSKVIFAFLEKDNYNVIENIISSGEAIKKISLENKLCGKRKSSASDILTPKEIVAQLDKTVIGQDEAKKALAVHAYLHCLRINGNKDIPFRSNILMIGPTGVGKTYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNLYRKANGDLEKAQHGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRMMHSSDGILMNTKNILFIFGGAFVGLDDIIKMRLKGESSLGFGSNAVINKLQKNRILSQVDVKDIEKYGMIPEFIGRIPIIVTLNDLTKENLKDILTKTSESPIIKYTEFFKSIGKKLVVTAEAINFIVDKASSMNMGARSLKSIVETAMVNILFNLDGVKGNTLTLTKYDIENAFSEKEFVTSGNEDKKLDNSSKNFSKESFMA
>NZ_CP019600.1|WP_101638494.1|1181514_1182837_-|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MQNIYLHSLGCEKNTVDGEHILAILQKKGFNITNNPEDADIIVINTCAFIEDSKKESIDAIFDHSMYKKYGKCKRLIVSGCMSERYKENFLEMFKEVDSAIGIYDLENILKAVEEDGFHDAKENTEYKEYGDRVNTGTKYSVYIRISDGCHANCSFCAIPGIRGEHRSRKIEDIVKEAENYAKNGAKEINLIAQETTFYGYDIYKKLALPDLLKALSKVEGIEWIRVLYQNPVVLNDEIIESFFNTEKVVPYFDIPLQHVDKEILKDMNRGTRSYKFYREMIDKIRSYNNDAVIRTSLIVGFPGETAESFKKLIKFVRNAKLDRVGVFTYSEEENTKALLINKPKMSRNRKLMLREKLMRAAIEVSEKRLERFIGRTIDVLIEKKEDDNKFIGRSIYDAPEVDGYVEVYNENTNNNINIGDIVQVAVTHNTEYDLIGNVI
>NZ_CP019600.1|WP_020064497.1|1182902_1184270_-|helix-turn-helix-domain-containing-protein
METIGQILKNAREKKGLTIEELEATTHIVAKFIKALENEEFDVLPGEIYVKGFIKNLSDKLSLDADMVLERYNLQKNGIKSDQDLLKSGKAIKNIKKNKEPVKEVKETKDNKEQEPVKEAVKEVNTKESLKDAINTEKHEEKTIKETNKKNKNTNTNNRAEADLLFMARRDLYKLRNKNRSVMPTVIIILAVIVVIAVIVFNWKNITGFIFPSNNKRQNRNEVEISKNIVDSKAKQSVKSGDIIYFKPLGISATIKFNSIGNVLHININGQDLSFSKSSPIILDLNGNGINDFKISVIEVYDNSATVEMEKLEEDQMINTAYTNDIETTAALNTTNYNDTVSTNLVVINGETYIEQDTEKVDIRIEITAKHFVYIRYFIDSNRPATTNLLSGKTLYLEANDVVMLTIGNAGEVVVKVNGKIINVGAAGETVNKTIKWVKNLNDSTRYNLIMSDTK
>NZ_CP019600.1|WP_012670759.1|1184284_1185007_-|outer-membrane-lipoprotein-carrier-protein-LolA
MKKVVLFIILLSVQAYSQIMTPEKVVSMISNRFSTIKGFSANFVERNGEKVSYGNVITKNPNLFRMQYSSGGNGQSIYCNGETLWIIFPRNNVVAEQKLNYGDSGAIYTPEGIMRLTTKFNIDFYNEREMVSLNSFNDSELGIAKYNSSYAANDNRKAYHMLLTSKQASVDRTGFTKIHLWVDNTGMIIRILGITTTNVPVEYLFTSIRYNPNYEDNNKDFEPEISENMQVLKDGLVPNN
>NZ_CP019600.1|WP_012670760.1|1185319_1185556_+|hypothetical-protein
MKINNTKYNMKKSRTIYSNRSAVIQNDEEIVLLLGNEMRKENTVDVDAAVYLSLPSFLRLYDTLKEKVDKFREGGNLI
>NZ_CP019600.1|WP_012670761.1|1185581_1185953_+|hypothetical-protein
MEKNIIKNSIKEYYINNDRNIILIIEKDINKSIYNELYNIVNRLLENHAKNIIIHFRNNTKYIISNAIYLMLEVQKVLEFRGGNLILTGLNEYSKWSLKSLEAHKKIKIHDDIQNAIKEVKAS

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Crispr_ID: NZ_CP019600_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019600_4

1376082-1376257

Orphan

Consensus_repeat	Method
ATGAAGATAATGATGAAGATGAAAAAATAAAATTAGAAAAT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP019600_4

>merge|NZ_CP019600|4|1376082-1376257|PILER-CR
ATGAAGATAATGATGATGAAATAATCAAATTAGATGATGTACTAGAAGACGGCGGAGAAACAATTCAAGATGATAATGATGAAGATGAAGAAATAAAAATAGAAGATTTATCATCTTTAGATAAAGTATTAGAAAATGAAGATAATGATGAAGATGAGAGTATTAAATTAGAAAAT

>NZ_CP019600|4|1|1376082-1376257|PILER-CR
ATGAAGATAATGATGATGAAATAATCAAATTAGATGATGTA	CTAGAAGACGGCGGAGAAACAATTCAAGATG
ATAATGATGAAGATGAAGAAATAAAAATAGAAGATTTATCA	TCTTTAGATAAAGTATTAGAAAATGAAG
ATAATGATGAAGATGAGAGTATTAAATTAGAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019600.1\|WP_012670933.1\|1385330_1386203_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NZ_CP019600.1\|WP_101638509.1\|1356882_1365666_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227596
NZ_CP019600.1\|WP_012670932.1\|1383519_1385265_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP019600.1\|WP_012670922.1\|1369903_1371694_-\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227333
NZ_CP019600.1\|WP_012670934.1\|1387037_1387829_-\|motility-protein-A	unknown	unknown	gnl\|CDD\|224210
NZ_CP019600.1\|WP_012670918.1\|1366667_1367000_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_047101316.1\|1365668_1365986_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378442
NZ_CP019600.1\|WP_012670917.1\|1366189_1366663_+\|chemotaxis-protein-CheX	unknown	unknown	gnl\|CDD\|381734
NZ_CP019600.1\|WP_012670927.1\|1378737_1379535_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|238519
NZ_CP019600.1\|WP_020064802.1\|1378461_1378725_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_047103416.1\|1379656_1380766_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|376510
NZ_CP019600.1\|WP_012670919.1\|1367001_1368141_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP019600.1\|WP_012670930.1\|1382247_1383030_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|367441
NZ_CP019600.1\|WP_020064972.1\|1369552_1369909_+\|response-regulator	unknown	unknown	unknown
NZ_CP019600.1\|WP_020064971.1\|1372819_1374922_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173534
NZ_CP019600.1\|WP_008730641.1\|1386218_1387019_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|180652
NZ_CP019600.1\|WP_020064800.1\|1383221_1383488_+\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NZ_CP019600.1\|WP_012670929.1\|1380850_1382245_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|131739
NZ_CP019600.1\|WP_012670920.1\|1368257_1369271_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012670923.1\|1371704_1372307_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319790

Protein	Function_ID	Function_description	E-value
NZ_CP019600.1\|WP_012670933.1\|1385330_1386203_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	6.98404e-43
NZ_CP019600.1\|WP_101638509.1\|1356882_1365666_-\|hypothetical-protein	gnl\|CDD\|227596	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only].	6.12097e-14
NZ_CP019600.1\|WP_012670932.1\|1383519_1385265_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP019600.1\|WP_012670922.1\|1369903_1371694_-\|GHKL-domain-containing-protein	gnl\|CDD\|227333	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].	1.12937e-37
NZ_CP019600.1\|WP_012670934.1\|1387037_1387829_-\|motility-protein-A	gnl\|CDD\|224210	COG1291, MotA, Flagellar motor component [Cell motility and secretion].	2.20121e-75
NZ_CP019600.1\|WP_047101316.1\|1365668_1365986_-\|hypothetical-protein	gnl\|CDD\|378442	pfam10531, SLBB, SLBB domain.	0.00139082
NZ_CP019600.1\|WP_012670917.1\|1366189_1366663_+\|chemotaxis-protein-CheX	gnl\|CDD\|381734	cd17906, CheX, chemotaxis phosphatase CheX. This family contains CheX CheY-P phosphatase which is very closely related to CheC chemotaxis phosphatase; both dephosphorylate CheY, although CheC requires binding of CheD to achieve the level of activity of CheX. CheX has been shown to be the most powerful CheY-P phosphatase of the CheC-FliY-CheX (CXY) family. Structural and functional data of CheX and its CheY3 substrate in Borrelia burgdorferi (the causative agent of Lyme disease) bound to the phosphoryl analog BeF3(-) and Mg2+ reveal a unique mode of binding, but a catalytic mechanism which is virtually identical to that used by the structurally unrelated CheZ, providing a striking example of convergent evolution. Thus, CheX is quite divergent from the rest of the CXY family; it forms a dimer and some may function outside chemotaxis. The data also suggest a possible CheX regulatory mechanism through dissociation of the CheX homodimer.	2.24949e-31
NZ_CP019600.1\|WP_012670927.1\|1378737_1379535_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|238519	cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.	9.17821e-76
NZ_CP019600.1\|WP_012670919.1\|1367001_1368141_-\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	4.7118e-50
NZ_CP019600.1\|WP_012670930.1\|1382247_1383030_+\|type-III-pantothenate-kinase	gnl\|CDD\|367441	pfam03309, Pan_kinase, Type III pantothenate kinase. Type III pantothenate kinase catalyzes the phosphorylation of pantothenate (Pan), the first step in the universal pathway of CoA biosynthesis.	2.8867e-29
NZ_CP019600.1\|WP_020064971.1\|1372819_1374922_+\|hypothetical-protein	gnl\|CDD\|173534	PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional.	9.43282e-06
NZ_CP019600.1\|WP_008730641.1\|1386218_1387019_-\|OmpA-family-protein	gnl\|CDD\|180652	PRK06667, motB, flagellar motor protein MotB; Validated.	7.8475e-67
NZ_CP019600.1\|WP_020064800.1\|1383221_1383488_+\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	3.7319e-25
NZ_CP019600.1\|WP_012670929.1\|1380850_1382245_+\|HD-domain-containing-protein	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	1.00424e-95
NZ_CP019600.1\|WP_047103416.1\|1379656_1380766_+\|chorismate-synthase	gnl\|CDD\|376510	pfam01264, Chorismate_synt, Chorismate synthase.	0
NZ_CP019600.1\|WP_012670923.1\|1371704_1372307_-\|HAD-IA-family-hydrolase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.78338e-31

>NZ_CP019600.1|WP_020064971.1|1372819_1374922_+|hypothetical-protein
MNENKKQKIMKTVLSLMISFLIIFIVAMFARAASNTVLPENNGIAVFINDYLDMMMQRVDKIAVKMKIKRNSVSEYQVNLITQSISDYVGYSMYQTSDSLKDFNPNNTPSKAQIDKYKNNYYKMTVENPYLRGMTVFSTEGKMLLNLYLSRNKSWPLELQDNLINEIKNKGSLVLNATNENAFYIMEYIKNPYGEIIVTTRNDYAYVSDIAMYYQVADKRLYVSDARNSVYNVREAVGDNNIEKVSSVINRYAYYKKQPSFMVNDSLSVSMIGKEYPNYFELIVLAITALLILVCQLFIKAVVYFFKYIMQIKSNKDYVESIRGNDELINNNIVNSQLPKSNAIEEMPPMIQKVHYKVPDEYLKENNNSKDEDKFNIGKDILNIVSNIKDEINACKNKFTVSKEDLEDKKENSENQLEESTTEEETIEEINEINTEIDIETAFANIKKDLQEEYDRAIEENFLEDSLYDMSSEEEVYEDINISENDDMSINEYEIKEEKEEENNDTVINDYEIKEEQYAENNDDDKEFMSISNEELNIKSSDSDIDNNFIAESLSLDENILKNNVLNNSEEKEEENAYKIDNEFNKKIIKNDLLSSYKEKEEEKNKEYVRNLFNSKKTENHINNDSHDISMDILNSYNKAIDNIKNKSEKEEDSKEDVKASNLDNESNSRTDDVFAAFDKMLSSIISKAEEDARKSITKK
>NZ_CP019600.1|WP_012670923.1|1371704_1372307_-|HAD-IA-family-hydrolase
MIKNIVSDIGNVLYEFNVNEFMNKYIDEEDREKFFQNSFSNKNWHLMDKGDLDFNDARKLFIDMNPKYQKIIDELFDTSLTLCLNKNHNNISLLKEYKNKGYDIYYLSNMPSETFEALRKETDFFDDTCIGGVVSAHIKMIKPNKDIYEYFLNKFDLKADECLFIDDNINNVNAALDIGIKAVQLKKIDDMKDILQNMLK
>NZ_CP019600.1|WP_012670922.1|1369903_1371694_-|GHKL-domain-containing-protein
MNFIKKTISKIKTRYGILFPSIICFFIILNFIAALWISSFIYEPNITNQFYMFSVMFFPLTSILIGVIVIIKFIVDAIMKKEGSHLKLVIVLIMGLMTVVPSLFISKISTYIIKTNLNLFLDQKISSSVEYVIDISNQEIIDKQIFMSNVIDSVGIRYFNNLYYNLEIGHIKYEDISKIIKSSEYFNNIVFLSNSYNLNNIIFFNSANYIPLDINYKLTNTNILFINSEYNGSFYVNAIIPLSYKNNYVIWSESMPKNYIEVRNNALETFRIYNSVNMFTNEFSMILSLLYIFVLGISAFFSIIFGIALSRLITRPISLILNATNSITNADFNIDMKLGGVHDMRNLIHRFNVMARALKYHRDRENTRARLETWREAAIKVAHEIKNPLMPIIMNAELIERKISTNMTDKDVEKAKKSSNIIIKNANVISNLVRSFSEFSFAIRLSDEKQSINSALIEVLESFKNINTIKFSVVLSKHDYFINMDKEKLIMAFRNLIKNAIEAMEKSSRSVIYISSYHEIIDLNEFFIISITDTGIGIENNNLHKIFEPYFTSKEKGTGIGLSTVEKIISEHNGTIDVESIPGEGTTFFIKFMIES
>NZ_CP019600.1|WP_020064972.1|1369552_1369909_+|response-regulator
MNYSAIIIDDDNNRLNKVKATLESSSIKVFIAENLYELISKIYKYSVKILVFNPNLVWINVIEFITELKKLPNYDEFTIFFLYEDIDIDLEREAKKHNIICMKYPLHINKLITKIESL
>NZ_CP019600.1|WP_012670920.1|1368257_1369271_-|hypothetical-protein
MKITLDMSISKLLDAFDREFGVSLGIYKGAHKSDNIKLFEISDPRKNQKAFIVINKDTSVESAEAMFRNTFGIRVQVKDKNGNTVSQESTLGGIRKLDKGFLDGSNESNIDLIDKDNDEEINDGSDEDNKKKKKKKSYFLKPKIVKHTVEDKIKEIDKYYLGFQRSERYKSMLNLLSCIEEAKLTYPDSKELIDHIEEIKSKSLNISNLSIKKRRFAILVLIIITSILSLIGIGTWGYNLYNNIKKDREADTIIQEIDNLRMRKGSLMESGNISEANAIDESINSKSERLNIIQNKTTASIANYFIVAALFFAVIVAMFILRLNKYNVTSIRFGKNT
>NZ_CP019600.1|WP_012670919.1|1367001_1368141_-|HD-domain-containing-protein
MPKIVIPLNEVKEGMKIASNIYNSDEKRIVDIGTIVTKDIIETLKRNSITTVSVMELLDLKKENTVNTSGDGKKPVLRGIMEEEGKKILKIDSQEVVKRQEATIEKTKSLYEIAKKGGGIDFDSMKKEVNNMLSSIVENKDAHSYLSMLKRKDETMYKHAVDVATLAAITAGELNLTKVDMANIMLGALVHDIGKVLIQESLLSKVNLTKEEESILKKHPTQGYKLVKRDNLDDNIADIVLEHHEKYDGSGYPFQKDNKDISLYSKIVSICNTFNNLLTKGEHGVPCTPDKAVKIIISLAKKDFDSDVVKAFQKAVGFYPNNTRVKLSNGSIARVIEQNPNLPLRPVLSIVKHLDGTVSDGLEVVDLSTSNDLFIKEII
>NZ_CP019600.1|WP_012670918.1|1366667_1367000_+|hypothetical-protein
MPKIVQYSLILFIIVLTIKIIIDNICIKIKSDKFLNKYFKDEEKLYSLEEVSSAFRLEKEHFLQLLSTLEKYNYFSFFNKKGVTMVKDYYSRYELKYLVRILSKKQKLKY
>NZ_CP019600.1|WP_012670917.1|1366189_1366663_+|chemotaxis-protein-CheX
MFDLDVVNAFSKGTVIILKSYFNSKVGKGDVRIYRNANHVGGVIVFVGITGDLSGRLMFNMSKATAFKLASALNMESITSIDDIFIATIKEFVNMVAGSAINDLSTKHIDLDMTPPAILMSEQMSMLEKENDKILSINYKTELGEIFMNLILFNQTN
>NZ_CP019600.1|WP_047101316.1|1365668_1365986_-|hypothetical-protein
MRDRILCLSFTLLIFVFGMFINLFYKTKNANDKLISITVKGAVVNQGVYFCKYGISVNEVLEICGGMTELGFLPIGFDYNMPITNDTTINIQKRYSNIRKNYEEN
>NZ_CP019600.1|WP_101638509.1|1356882_1365666_-|hypothetical-protein
MEKEFASIFESNKDISLDEYEINKLLEKSIEINENEFPVIAIGNSDKETPKIHGKITTKEYEEKDNKVVNNYSEDKEGLDVSNNAYSEEETKNYKNLQETLSLSESDIEVAGEIVDSEIDMSRLFPNSDNSNNLDKEETEVQEEEPEKTSELTEEQSEIINNIYSKEESNIHKQSEDESLEGYELSNIETVEDFNLDDSFKKDDSPTYYEEEEKNSDLHSAENDDNASDESDLNSLEDNLKELSDDIKGDNKSIEDIDIEDLIGEENTLNVENIKDESIRLGESDLNNLEDTLKDLPNDANNDVENAAPKDINIEDLIGENIEYEEEYDDDDTSEEESGLELREYTDEELLDINNILDDEEIESNNKVPEESAQSNEENSSALEELENIEESIDENPEESEPTTEESGLEMKEYTDEELLDINHIEDDESSPEEEVIQDDEKTPDEDLSALEELENIEESINENPEESDTTTEESGLEMKEYTDEELLDINHIEDDESSPEEEAREDDEKTPDEDSSALEELENIEESIDENPEESDTATEESGLEMKEYTDEELLDINHIEDDDSSTEEASQDDEKNIDESLSDLEEFENIEESIDENPEESDTATEESGLEMKEYTDEELLDINHIEDDESSPEEEVIQDDEKTPDEDSSALEELENIEESIDENPEESDTSAEESGLEMKEYTDEELLDINHIEDDDSSTEEVIQDDEKTPDEDLSALEELENSEEAIEEKLEESEPLSEEVSEDDEKNIDESLSALEELENIEEAIKEKLEEESEPLSEEVSEDDEKNIDESLSALEELENAEEAIEENLEEEKSDDETISLTESSLNELESEPLEENIEKTPTEDNNELSLDKYTLIELEDGTKVKRTSYAKDNIDVEDAVFSDEQNYVVQHIYSEEQDILMKEVSEKDALTEEELESIDCVEEFDLSSLFNNQPVDNNINDNEEEIEVPDLYDDNSVVIDNDDSLAINEDLELPEIDDEEPKEVDLIKEDNLKEDEINIQYNDRNVVVPDIDNVDYIDESNYINEIDNDDDVIQLSGNELDLITKDFEINNIESPKEEDITDDYREDNYTMSEISDGDLEEIDDGYINENEEDIIDDYRENNYTMSEISDGDLEEIDDGYINENEEDIIDDYRENNYTMSEISDGDLEEIDDGYINENEEDIIDDYRENNYTMSEISDGDLEEIDDGYINENEEDITDDYRENNYAMSEISDGDLEEIKEELTEAEESKEENALEQLEESKPEESESQEYSSELIEATEIKVEEVSEQLEESKPEESESQEYSSELIEATEIKVEELSESSKEDTVSEELEEPKSEESESHEESSELIEDTEIKAEEISEPIEETKDEELTSEPITEEIKEDISESQKEDTVSEELEELKSEELESESQEYSSELIEDTEIKEEEISEPIEETKDEELTSEPITEEIKEDISESQKEDTVSEELEEPKSEESESHEESSELTEATEIKEELTEAEESKEDNTVSEELEEQKLEELKEEKPELTNDYISKLHDEYLHNQELNNNQESSNDDYISKFKKMNEEYVESTKKEEEHKEEIKDEDLTDEEKELYKSYLSNTTDIQELENKSEESSSEPITEEHKEEASSQVEEPKEEKPELTNDYISKLHDEYLHNQELNNNQEPSNDDDYISKFKKMNEEYVESTKKEEEPKEEIKDEDLTDEEKELYKSYLSNTTDTQELENKSEESSSEPITEEHKEETSSEAEESKEEKPELTNDYISKLHDEYLHNQELNNNQEPSNDDDYISKFKKMNEEYVESTKKEEEPKEEIKDEDLTDEEKELYKSYLSNTTDTQELENKSEESSSEPITEEHKEETSSEAEESKEEKPELTNDYISKLHDEYLHNQELNNNQEPSNDDYISKFKKMNEEYVESTKKEEEPKEETSSEVEESKEEKPELTNDYISKLHDEYLHNQELNNNQEPSNDDYISKFKKMNEEYVESTKKEEEPKEETSSEVEESKEEKPELTNDYISKLHDEYLHNQELNNNQEPSNDDYISKFKKMNEEYVESTKKEEEPKEETSSEVEESKEEKPELTNDYISKLHDEYLHNQELNNNQEPSNDDYISKFKKMNEEYVESTKKEEEPKEETSSDVEESKEEKPELTNDYISKLHDEYLHNQELNNNQEPSNDDYISKFKKMNEEYVESTKKEEEPKEETSSEVGESKEEKIVNNDEDLTDEEKELYKSYLSNIPEESEPQEESSELIEETEIKAEEISESIEETKDEELTSEPITEEIKEDISELSEEVKEEESTSESESTEELEEEIINNEDDLTEEDKSMIEGYLDKVDASSEDLTDEEKELYQSYLSNAEAEESENKEESSELVEETEIKSEEISEAIEETKDDISESSEEVKEEESTSESESTEELEEEIINNEDDLTEEDKSMIEGYLDKVDASSEDLTDEEKELYQSYLSNAEPEESENKEESSELVEETEIKAEETKDEEPITEEIKEDISESSEEVKEESTSESESTEELEEEIINNEDDLTEEDKSMIEGYLDKVDASSEDLTDEEKELYQNYLSTSAENQEEVKEDISESSEEVKEEESTTSESESTEELEEEIINNEDDLTEEDKSMIEGYLDKVDASSEDLTDEEKELYQNYLSTSAENQEEVKEEESASEPESTEELEEEIINNEDDLTEEDKSMIEGYLDKVDASSEDLTDEEKELYQNYLSTSAEETDEEEDYNNELKEEVSDEELEDLVYINNVQIDEIRDSDLNMLENIIKGNDEDGVELIRIDDKINENNNTQEDNTKAKSLENFDSMEELLNKETNMSEEKELETIEKENLDENVAVEEEFSLGDDNEPILMEDEKHTEDDEEDFDGEITQSDLDYAIKLFESEESNVNTNEYSSKQDILLSENEINKFKKLFGYFKNIVEKMSPEDLNDFSKTEFYDMYSSLFRKFGD
>NZ_CP019600.1|WP_020064802.1|1378461_1378725_+|hypothetical-protein
MEYIIVVSAFIVIGIIVSLVFGKILKIKVFGGWVMMFLIATVGALLGSYYLPRLSNIQYIKINLSSAILGSFILVILLYIFTPKSLK
>NZ_CP019600.1|WP_012670927.1|1378737_1379535_+|type-I-methionyl-aminopeptidase
MFIKEVREIVKPSIKDEDAIENIRKAAEIAQNSIDLAFKLCMSGVRASKVDKEVEKYIKSQNAYPANFEVPDYGFATSISSGNEIAHGRPTNNKILVHGEPVCVDVGVKYNGYYADCARTIVIEGGMGSVNHRAYKLIDACKKSLEYGIYKLRPNVLLSEYGRTVENKVHEYGFSVIKSLTGHGVGYEYHEAPYIFNFYHPNNDVALEPNMVLALELMITNGTDKYEKEKDGWTLSTPDYSLAVHFEHTVLITQTGVEILGIKKQ
>NZ_CP019600.1|WP_047103416.1|1379656_1380766_+|chorismate-synthase
MGSVFGNNIKLSLFGESHGEAIGCVIDGFPYGINIDNDFIDSEMDRRRAKNAKLTTARNEADKVEILSGILEGKSTGMPIAAIIRNENKRSGDYSNLKTLPRPSHSDYTAMLRYDGFNDIRGGGHFSGRLTAPLVFAGALAKLALKEKFDINIAAHIKQIYNIKDKYPNNVFPTYEEFTDNYNKELSVFDNEAMDKMIKTIEEAKMNMDSVGGIITAAVFNMPAGFGDPFYSSIESRIAQSIFAVPAVKGIDFGLGFDFVNYKASECNDAYTIKDDNNIKRVETKTNNNGGILGGISNGMPIVVNVVIKPTPSISKEQLTLNIETKEEETLVIKGRHDPCIAVRAVAVIESAIAVSILDLCLDMKGKLI
>NZ_CP019600.1|WP_012670929.1|1380850_1382245_+|HD-domain-containing-protein
MKKIFTDIPHPIKEIARILYVEGFQCFLVGGAVRDSIMGITPHEYDITTDARPEDVQRIFKYTIPTGIKHGTILVIIEDMHVEITTFRSDGNYSDGRHPDHVEYATSIEEDLPRRDLTINAMAYNILDGSLIDMFDGMKDIKKKIVKSVGNPYERFSEDGLRIMRAIRFATKLDFDIEKETFDAITHSTGMLASIAAERIREEFNGILLSKNPFRGLELLRKTGVLSLILPELMQGFGVNQNKFHKYDVYYHILHTIQSVEPLETEELTLLVRLAALFHDIAKPMVQKKVSKQDDPVYYNHEVVGANIAKKIMKRLKYSNSEIDFVTLLVRQHMFYYQDEWTDGAVRRFMRAIGVENIRPLLRLREADRLGSGNRKDKESKAIPKLLARIDKIIEEENAITVKDLKIDGNDLINEFNLNPGPLIGKILNYLLDLILDEPELNNREFLMEKTKNFLESNNIKDGV
>NZ_CP019600.1|WP_012670930.1|1382247_1383030_+|type-III-pantothenate-kinase
MYLLSDIGNTRAKLAIFEEKNCKPLYYKAIEHSNALDLVSALNEIKNNHTDIKQVFYSSVSLKVNDLFEGSVEDCFNMKPYRVTHNDIELKGNSYEPKDSVGIDRILSTYASICLEKISNSNEEKYASVVIDMGTATTVSIMISDFTFLGGMIIAGTKTSYQALSNVTSLPYYEIGPIESIPNPINNNVKDAIMSGAIYNTIGTVNYAVSETKKYIKSKYNIKCKIFLTGGISNLKLLKCKVYPFLVLQGIYFNMIAKNK
>NZ_CP019600.1|WP_020064800.1|1383221_1383488_+|HPr-family-phosphocarrier-protein
MTTGKVTIQNDTGLHARPGNEFVTFIKSLTGCKIEIENEAGKRVNASSLLKVLSLGVKKGSVLTVYCDGENEAENLKKIEEFMANLKD
>NZ_CP019600.1|WP_012670932.1|1383519_1385265_+|phosphoenolpyruvate--protein-phosphotransferase
MEKRITGIGVSPGIAIGKVYLFLKKDIVISKCPCKEVESEKAKLLEARNKTKEQLLKIRESTAKKVSEEKAAIFDAHITLLEDEDLLEEVNNIITDDKVCAEYALSQGIEIYTKMLSEVEDEYLRERAGDLLDISDRWIRNIQGEDIVDVSNLPKDSIVIARDLTPSDTANLDLDNTLAFVTEIGGRTSHTSIMARSLELPAVVGVGDSLSDIENDQIIIINGNTGSVIVNPTKESIDECLKLKEEFDKKRALLKEYAHKDAISKDGTKIRVYANIGSPADLGGVLKNGADGIGLYRTEFLFMENTDFPTEDEQFKAYKEVAVAMSGHTVTIRTMDIGGDKYLPYLEMPKEENPALGWRALRICLDKTSIIRTQFRALLRASAFGKIKVMLPMIVSIEELRKAKSIFNECKLELMKENIPFNEALELGMMIETPSVVFRAEAFARESDFFSIGTNDLTQYTLASDRGNEKIAAICDPYNPSVLIAIKMAIEGAHASGIIISMCGELAGDLLAVPLLFGLGLDVFSMSAISIPEVKKMIISLDKSECQMLAKRVLSLDTAEEVKAELLRFIEVHERGGTISY
>NZ_CP019600.1|WP_012670933.1|1385330_1386203_-|class-I-SAM-dependent-methyltransferase
MLLADKWKDYKIIDCGEGEKLENIGGFLVSRPDSQVIWSKQLKKWNNLDAIYHRSDKGGGYWQYINKPKDNFIIKYQDLSFKIEFTNFKHIGIFPEQAVNWQFIIDKIKEKKSSSHKNKEIKALNLFAYTGGATVACAYADCDEVVHVDASKKIVGHAQKNIEINNLQNKKVRFIIEDVIKFVLREIRRERKYDVIIMDPPVYGRGPNGELWQIETSLKRLVEECIKLLSDEPILFLINCYTASFSNISLKNILSTSIKHKGTFESGEIGIPIENSDIILPCGIYARFYS
>NZ_CP019600.1|WP_008730641.1|1386218_1387019_-|OmpA-family-protein
MATIKFGKKAKKVGDKAQVPGPSAPLWLQTYGDFVTLVLTFFVLLLSTMSTSVSDSSIQLIATAFQGSFGVMPGGTTLSQSRLIYGGATVDNLPSTDRGYSVGRSIDKATSVLESEIKSRKVRIEEDERGFIISLGADQYFESASTNLVDNQNNVETFIKLASVLSGLPNDVRIEGHTDSGSIIPGSITEQKFGNNWGLSSARAMVILEKIFENDQAGKLDRNKYSIAGYADTRPVASNDLPDGRALNRRVDIVVVRNDVTYYNQR
>NZ_CP019600.1|WP_012670934.1|1387037_1387829_-|motility-protein-A
MDIIVPLGVFLVIGINLFGIISGGGNVGHMVDIASAVVTGLGGTTSLLVANDLGTILGVPKALKMLLNKPDYDEAQIIITLLSFSEKARREGLLVLEDDIQEISDPLLKKGMQLVVDGTDPELVKNILNTEIDNVEARHDTVRKVFEDAASLYPAWGMIGTLIGLVIMLRSLGGGGGVEAIGSGMAVALITTYYGSVIANGFALPIAGRLAARHSSEATVQSIMVEGILSIQAGDNPRIVKDKLISFLPPSQRQKVNEQVGDR

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Crispr_ID: NZ_CP019600_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019600_5

1598348-1598465

Orphan

Consensus_repeat	Method
AATAAAGATCCTCTAAATCCTTATTATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019600_5

>merge|NZ_CP019600|5|1598348-1598465|CRISPRCasFinder
AATAAAGATCCTCTAAATCCTTATTATTCCAATTGACACATTAGTAAAAACAGCATAATTTTTCCATTTAAATATCTGTTTTTACGGAGAATAAAGATCCTCTAAATCTTATTATTCT

>NZ_CP019600|5|4|1598348-1598465|CRISPRCasFinder
AATAAAGATCCTCTAAATCCTTATTATTC	CAATTGACACATTAGTAAAAACAGCATAATTTTTCCATTTAAATATCTGTTTTTACGGAG
AATAAAGATCCTCTAAATCTTATTATTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019600.1\|WP_020064890.1\|1608799_1609339_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012671108.1\|1590214_1590424_+\|DUF1858-domain-containing-protein	unknown	unknown	gnl\|CDD\|274898
NZ_CP019600.1\|WP_101638532.1\|1601008_1603168_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP019600.1\|WP_012671106.1\|1587689_1588010_+\|YggT-family-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_047104107.1\|1605500_1606307_-\|M55-family-metallopeptidase	unknown	unknown	gnl\|CDD\|176452
NZ_CP019600.1\|WP_101638531.1\|1600001_1601003_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP019600.1\|WP_012671119.1\|1608286_1608712_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_047110867.1\|1604882_1605389_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240048
NZ_CP019600.1\|WP_101638528.1\|1595645_1596788_+\|variable-surface-family-protein	unknown	unknown	gnl\|CDD\|368488
NZ_CP019600.1\|WP_012671110.1\|1591765_1592635_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP019600.1\|WP_012671111.1\|1592665_1593784_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|336785
NZ_CP019600.1\|WP_012671115.1\|1603332_1604511_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|273380
NZ_CP019600.1\|WP_020064891.1\|1606752_1607958_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP019600.1\|WP_047109647.1\|1588018_1590157_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP019600.1\|WP_047100937.1\|1587342_1587675_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP019600.1\|WP_101638530.1\|1598615_1599794_+\|variable-surface-family-protein	unknown	unknown	gnl\|CDD\|368488
NZ_CP019600.1\|WP_047104115.1\|1594114_1595275_+\|variable-surface-family-protein	unknown	unknown	gnl\|CDD\|368488
NZ_CP019600.1\|WP_101638529.1\|1596997_1598083_+\|variable-surface-family-protein	unknown	unknown	gnl\|CDD\|368488
NZ_CP019600.1\|WP_012671121.1\|1609494_1610481_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381315
NZ_CP019600.1\|WP_044555309.1\|1590486_1591233_-\|DUF3108-domain-containing-protein	unknown	unknown	gnl\|CDD\|378635

Protein	Function_ID	Function_description	E-value
NZ_CP019600.1\|WP_012671110.1\|1591765_1592635_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.79948e-08
NZ_CP019600.1\|WP_012671108.1\|1590214_1590424_+\|DUF1858-domain-containing-protein	gnl\|CDD\|274898	TIGR03980, conserved_hypothetical_protein, hybrid cluster protein-associated redox disulfide domain. Members of this protein family resemble the domain of unknown function DUF1858 described by pfam08984, but all members contain an apparent redox-active disulfide. In at least one member protein, a cysteine in the CXXC motif is substituted by a selenocysteine. Most member proteins consist of this domain only, but a few members are fused to or adjacent to members of the hybrid-cluster (prismane) family or the nitrite/sulfite reductase family. [Energy metabolism, Electron transport].	1.48507e-21
NZ_CP019600.1\|WP_101638532.1\|1601008_1603168_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.25465e-58
NZ_CP019600.1\|WP_047104107.1\|1605500_1606307_-\|M55-family-metallopeptidase	gnl\|CDD\|176452	cd08770, DAP_dppA_3, Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized putative peptidases.	2.80434e-120
NZ_CP019600.1\|WP_047110867.1\|1604882_1605389_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240048	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.78526e-23
NZ_CP019600.1\|WP_101638528.1\|1595645_1596788_+\|variable-surface-family-protein	gnl\|CDD\|368488	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.	1.25828e-173
NZ_CP019600.1\|WP_101638529.1\|1596997_1598083_+\|variable-surface-family-protein	gnl\|CDD\|368488	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.	5.00224e-142
NZ_CP019600.1\|WP_012671111.1\|1592665_1593784_+\|AAA-family-ATPase	gnl\|CDD\|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	2.07907e-42
NZ_CP019600.1\|WP_012671115.1\|1603332_1604511_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|273380	TIGR00990, Mitochondrial_import_receptor_subunit_TOM70, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70). [Transport and binding proteins, Amino acids, peptides and amines].	8.55785e-19
NZ_CP019600.1\|WP_020064891.1\|1606752_1607958_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.11378e-15
NZ_CP019600.1\|WP_047109647.1\|1588018_1590157_+\|sel1-repeat-family-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.02267e-07
NZ_CP019600.1\|WP_047100937.1\|1587342_1587675_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.76302e-14
NZ_CP019600.1\|WP_101638530.1\|1598615_1599794_+\|variable-surface-family-protein	gnl\|CDD\|368488	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.	9.56414e-160
NZ_CP019600.1\|WP_047104115.1\|1594114_1595275_+\|variable-surface-family-protein	gnl\|CDD\|368488	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.	3.93775e-163
NZ_CP019600.1\|WP_101638531.1\|1600001_1601003_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	3.18598e-58
NZ_CP019600.1\|WP_012671121.1\|1609494_1610481_+\|aldo/keto-reductase	gnl\|CDD\|381315	cd19089, AKR_AKR14A1_2, AKR14A family of aldo-keto reductase (AKR). Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ), also called GAP reductase, is a founding member of aldo-keto reductase family 14 member A1 (AKR14A1). It catalyzes the stereospecific, NADPH-dependent reduction of L-glyceraldehyde 3-phosphate (L-GAP). It is also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2). It catalyzes the conversion of 3-hydroxybutanal (3-HB) to 1,3-butanediol (1,3-BDO) by using NADPH as a cofactor.	0
NZ_CP019600.1\|WP_044555309.1\|1590486_1591233_-\|DUF3108-domain-containing-protein	gnl\|CDD\|378635	pfam11306, DUF3108, Protein of unknown function (DUF3108). This is a bacterial family of putative lipoproteins. Structure 3fzx, the first structural template for this large family including several homologs in the human gut microbiome and in metagenomic datasets, folds into a beta barrel that topologically looks like a small-scale porin (such as FepA). Bacteroides fragilis glyA is a putative exported protein, and this fold is of the YmcC-like type, with a predicted signal peptide SpI cleavage site AGAMA\|QNQDC, and a Phobius server prediction of non-cytoplasmic localization for amino acids 21-236. The possibility of it being a membrane protein can be ruled out by the hydrophilic nature of the solvent exposed surface outside the barrels. Analysis of sequence conservation suggests that an area near Glu172/Trp206 is potentially interesting. These two residues are also conserved in Dali hit Structure 2in5, a hypothetical lipoprotein classified as a new YmcC-like fold in SCOP (SCOP:159271, with a 12-stranded meander beta-sheet folded into a deformed beta-barrel) despite large structural differences between the two structures, suggesting similarity in function.	1.77105e-13

>NZ_CP019600.1|WP_101638529.1|1596997_1598083_+|variable-surface-family-protein
MKKIMLAAIAILTIFSASALGMYGDQDDWIDFLTAGNQLRARMDQLGFVLGNNTIKGTFGLRTQDAVTSLGSIISGETDNLGLDATVSMGIGYTSDIFGIGLGYNFTYYNSTLGVHTPVLMVNALNNNLRIAIPIQIAASKDPFGKDTISQYKDYLGISTDIQIRYYTEIDVFNQVRLYIKYGQSGYKNVKNNFDMFAQSFGFETRLYFLNRTIGNVNINPFIKVSYNTALASSDVMVRAGESLVNTTYSKKENKWEKNPYNVTAAAVLGLTANSDMLSLYVEPSLGYNAVYKGKYKTDSKYYKVQHNLYWGAYAELYITPVQDLEWYFEMDINNGNSRQTSSIPIYFESTTGITWYLPEL
>NZ_CP019600.1|WP_101638528.1|1595645_1596788_+|variable-surface-family-protein
MKKVLLTAMALLTIASASAFGMYGDRDSWIDFLVHGNQLRARMDQLGFVLGNGTIKGTFGFRSQSAVTKIGNILSGNTGNVDLQTTISAGIGYTSEPFGIGVGYNYTYVNPRLGVHTPVLMINALNNNLRIAVPVQIAVSHDPFNDSAKFPYSSSTKDYMGISTDIQLRYYTGIDAFNAIRVYFKYGQAGFKTANGASEYFAQSLGFEARFYFLNTPVGNVTINPFIKVAYNTALQGYNRTVRAGEAVTYDASKEYAGLGAGSFDAKDQKWDSNPYDVKAQAVLGITANSDVVSLYVEPSLGYQATYLGKMTKNGVVAWDHKVQHSLAWGAYAELYVRPVQDLEWYFEMDVNNGGTRQPSNIPVYFKTTTGITWYLPALN
>NZ_CP019600.1|WP_047104115.1|1594114_1595275_+|variable-surface-family-protein
MKKFLLTVLAILTIASGSVFGMYGADNTWLFFLIHGNQFRARMNQLGFTLGNGTIKGTFGFKANTLINGSILNTGNKENQNPLEATISAGIGYTGDGFGVGVGYNYTYTAANTIQTKAAKGINTHTPVITFNAVNNNLRVAIPVSIAVEKDIGKLGNMDRKDYLGLSIPAQIRYYTGIDAFNYIRFEFNYGLNKYNGVENNTTTEYQAQTISFQLRLHFLNTVLGNNVTVNPFLRVDFASTVGAKGKGNVVFPASTAFDGRLTAWAANAWADDPNSIYDRELYDLKIIPSVSLSVNTDYVNLIFEPGLGYRVQDDGVKGSKLTHTLYWQAYGEIYIRPVQDLEWYFEMDVNNGVPKLQGNPIASGNSMPVVFGANTGITWYLPALQ
>NZ_CP019600.1|WP_012671111.1|1592665_1593784_+|AAA-family-ATPase
MKKDNINNNEEKIHQKPLMEELYKEELEALKKEDKNNKPKNWNLSPQAVRDFILGKKLKSGVEIKRKFYGDDSLVERAIITLAGNRGLMLVGEPGTAKTMLSELLSAAISGNSTVTIQGTAGTNEDNIKYSWNYAMLFAKGPVEEALIPSPVYTGMNEGIITRFEEITRCPLEIQDSLISILSDKIMNIPEQNRVLFANAGFNIIATANTRDKGINEMSSALKRRFNFETVEPIKNPKLEGEIITNQCQTLLELADIDIDIEYDVVDILATTFNELRSGKSFENAKIQELNSVMSTAEAVSVYYQSALHSYYYGDKNIKMETIVGNLIGSVAKENKDDIPKLKNYFNNSVKIKAEKFGKKWKDYYESRNLIK
>NZ_CP019600.1|WP_012671110.1|1591765_1592635_+|DMT-family-transporter
MAIFLLIGVMALSASAIFVKLANAPSSIIAFYRIFISFCFITVITISKKSSREELLSISKKEIILSVISGLSLALHYFLWFQSLSLTSVASSTVIVTLQPLFAFVAGHFFFKEQYSKLAILGFVIAVTGSVIIGWGDFQISSRALLGDFIAFISAGLISAYFIIGQYTRKRLSALTWISLTYFSAFIFLGILSYIMKIPFIGYSLNTWINILGITFISTMLGQVIFTWLLKYFSATIISMTILGEAVGTCILGYFILHESISFKQFIGISVILIGIGLFLWEKRKTISQ
>NZ_CP019600.1|WP_044555309.1|1590486_1591233_-|DUF3108-domain-containing-protein
MKKYIFIIMALISNIVFGYNQTFKVGEYIKYDVLAQVPEFNISGKVGMLEAEVLAISNVNGIPAYHLYAHVYTTGAANLLYKVSDIFEAWVSTNDFKPILLKKDTTEGDWTNKESLAFHGNYYLFNDKRTVDEKIEFEGMAFDALSLVFFMRFVDKNIGTFKINWLEGKNVKKDIRFTIENGEELKTKLERNKLSTVRIYEKEKYGTDALIAKDKYNQVPLDVIIAEQKVYGLTIRVRGIIREYKDGK
>NZ_CP019600.1|WP_012671108.1|1590214_1590424_+|DUF1858-domain-containing-protein
MINKTMSIGEIIQIFPDSVEIMMGRGLHCVGCHVASWESLEEGCRGHGMSDELIDSLVKEINDKLEASK
>NZ_CP019600.1|WP_047109647.1|1588018_1590157_+|sel1-repeat-family-protein
MSSLDEISKYIDDGDYRKAIEELDLIISREPDNARAFYMRGKSAFIELQNEEFDKNKYDARIALIYSTIEYDLNKSIDIDPNITDAYRGLMYLNRDLKNVDKEREYAQILFEKDNTAYDALLILASSYLNNGENEADFHQAIGYYDDFIKNVKPENSKVARFERGLCYYNLNILTKADIEANKLIYDFPFYDDAYFLKGIILAKNGTKSEFYDDAIFFLDRAVELNASNYNAIYERGEWYFNKENYRKAIENYNELLKHNNKYRLNALLGKIQALHDLIIENENENYPDSQEEGKDLAEVFYLLDKVIDVIGIKSLQYRYYRGNLYAYQGEIKKAIAEFKKILNENKESWIYEKIAELYHNYAKNDDDYREALKYLSHIDKIEYKYSTYYLSIFSNYEIKNYEAAAQLCREFFEYVNDDDDEVYYIRFIYAHSLQMIGSNDYKLILDNFKICLNSNLDKAPIYRSIAKIMLYNMPNEYVNEGIYMLKKALELNDAISYHIYAKELFYGDIITPYPELAISMANIAFDIDNTLECALTVIGKAYELGRGIEQDDFKAFEIYSKAMTICKNSNSKCSCSNGLTAHCYYKGIGVEKNEEMAYDIIKKTVDALGNNSHDYVALLYSYFALNNIEGFDLVTSLTLFENIENYSHNIYIIMTLKRIYKKLGKYNDVRRMAKMEKKALENTGELNLNYIRKYIKNFNNFYPILNRDFTL
>NZ_CP019600.1|WP_012671106.1|1587689_1588010_+|YggT-family-protein
MLIETIRFIYYLLMQTLRLYSFIWFVWIILSWLQAFGAMHLDYYNPIINFFYKITDGVIDKIFGGRRLIVGILDLSPLVFLLVLQLVVPMILRIVFQFLLNIIARV
>NZ_CP019600.1|WP_047100937.1|1587342_1587675_+|STAS-domain-containing-protein
MVRTIIEDKTAIINIEKNIISENVDILEEKLNYIKNAGVLNLIFDFHNIEYMCSSALGLIASALRLSGENGGVVYFCSLSKQLKSLFEATKFLSIVNTANNIDEALKNIK
>NZ_CP019600.1|WP_101638530.1|1598615_1599794_+|variable-surface-family-protein
MKKVLLTAMALLTIASASAFGMYGDRDSWIDFLTHGNQFRARMDQLGFVLGNGTIKGTFGFRSQAATTLWGNILKTGETGNIDLTTTISAGIGYTSEPFGIGVGYNYTYMHERLGVHTPVLMINALNNNLRIAVPVQIAVSHDPFNDSAKFPYSSSTKDYMGISTDIQLRYYTGIDAFNAIRLYFKYGQAGFKTANGASEYFAQSLGFEARFYFLNTPVGNVTINPFIKVVYNTALKGVSRTVRAGEAVQNTVSGYNPYDPNSKLDAFAGRNIDKDFKWDSNPYDVTVQAVLGITANSDIVSLYVEPSLGYKANYDGQYRDVYTSGDTIKGDDPKVEHKLAWGAYTELYIRPVQDLEWYFEMDVNNSNEKKNGVPVNFNASTGITWYLPALN
>NZ_CP019600.1|WP_101638531.1|1600001_1601003_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MDSFEKLEQIFKEPITIDNINRINDCFIRYLFSAEGSEAIVLNFINSVMKNLDFETFVKVEILNPFSLSKYLKSKESIMDIRCVTESGQVVIIEIQLQGNNEFIYRSLFYWAKGYSVMLDRGENYNKLQALIIINILDFKLIENIDDIHTCYVLKEIKHNNILTDHCQIHYLELPKFNNNTNIKDIKKEVLSWIKFFKGEDMKTLLKEDTVFELVKEKSESFLCDNPLIDTYKRKEIDEYFNKRMLDYEIKNAMNKGIQEGIEKGIQEGIEKGIQEGIEKGIQEGIEKGIQEGMEKGIQEGKIEIARNLKKSGIDIKIISDNTGLSIEQIEKL
>NZ_CP019600.1|WP_101638532.1|1601008_1603168_-|single-stranded-DNA-specific-exonuclease-RecJ
MDINNLNTTILELLKLRGITSKEDIYDFFFQDIYSLSNPFNIRDVNVFVDRVKEAIENDEKILVYGDKDADGITAASIIYNTLKVVTKNVEAFVPNHTTGYGLSKAVIEEYANSGVSLIITVDCGISNAEEVEFARDLSIDIIVTDHHDIPEILPNAYAVFNPKISNTGFVSKNFSGCAVAFKLMQAFVFSYTKLYNKDIIVLDYEIDKSKNVLKRIRALKATNFVISDEVFGFELINDNNCYKSIYADYYDELMSEDEVLEELATYMFEGDGCVLVLTGGEERLKKLLNFYERYEIYLPEYDNVYDLLQLGAKYGNVNIKTTKTLDDFALALNVNIYRYDDIAYRDLIIKMEIFRRLFYISQKQLQSYIKKKSILVLFGSVADVVPLIEENRAYVKCALKELEKPSHIRYNIILERINLLNTKIDTQAISWRLAPFINAAGRMGSPETALKLLTCEIKEEAVTLSNEVYNMNETRKSLTESNFTIVNEYIKTNSCLKLPIIVVKSKKIEQGLTGLIAGKVLSEYGKTAVIMHESDDGVCIGSIRSRGDDNARDMLEYANAYLTKFGGHKNAAGFTLNTDNFDKFQSKIIKYASSQNFQTEKNEDEFDLEISFKDIDIKLAKLLEMFEPYGCGNEEPLFMSKKVKVNSINKMKKNNKTHLRLELSQDNKKVNAIMWDKSDEEADKLLSSDYIDIIYKLKVNRFNGSEDARIYVESYKIF
>NZ_CP019600.1|WP_012671115.1|1603332_1604511_+|tetratricopeptide-repeat-protein
MAEKDIKNFFNKAYDAFKSKNYKLAIEYFSEVIKLDSTIYEAYYNRANAKANIDDEASYKSAVEDYTWTIKLNDQFAAAYYNRGIINRSLGNTEEALKDFDKTIELNYNLEEVYYVRANTKASLKDYKGSIEDYNKAIEVYPHFADAYYNRALSKNALGEYKEAIKDYDKAIEYNSHFIDAYNNRGNVKEKLGNFNEAIDDYTNAIHINREFADGYFNRANAKFHIKDYKGAVEDFDELIKINPKYTKAYLNRGIIAMTMEAYQEAIKDFDKVIELEPNLADAHYNKAVALNHLGIYDEAILYYNKAIELNPNYSESYFNRGISKSKTAYMKKDKMNEDEYKNMIKESEDDFDKAYDLANEHIKNIISDGLKKLAFLNMEAAENFCKKHDIK
>NZ_CP019600.1|WP_047110867.1|1604882_1605389_-|NUDIX-domain-containing-protein
MAEIWDIYDINKNKTGRFHQRGIPLNKNDYHIVIHAWVVNSNDEVIITKRHKSKKICPDMWECTEGSILAGEDSIDGALRELEEEIGLSFKKDEAVFLTSFVLDFSNTIVDSYMFRRNVNIEDLVLQENEVSDAMIVNREKYLEMCKSGDIISSIRYFYDIYDKLNNK
>NZ_CP019600.1|WP_047104107.1|1605500_1606307_-|M55-family-metallopeptidase
MKVFISADIEGITTTTQWPDTDAGSLTYKDHALQMTKEVKAACEGAIDAGAKEIFVKDAHDSAMNIFQTALPECVKIHRRWSGDPYSMIEGIDESFDAIMFIGYHNAASIGNNPLSHTMNTRNVYVKLNEVLASEFMFFSYAAAYRKVPTVFLSGDKGLCEVAQNMQPNHPNLVTLPVKEGIGYSTINYSPNLMVKMIKEKTKEALSQDFKGKLLKLPNHFKLEICYREHGYAHKVSFYPGAKKINDTTVIFENNDYYEILRALKFIL
>NZ_CP019600.1|WP_020064891.1|1606752_1607958_-|MFS-transporter
MTILVYSMPFLLYLCSSIFSTVLVINASISGATPFFVSLIGVSYGMGMMLTAGTFSRIKIQKKYYTNLIYVEAVLQLIIAAACLIFLPPEMSLFYSFLYGCSATIFFVCFQSSLDVVSKDLPVTLSGALFIFSWSLGFALGPTITGMIYKFDYKLGFYFVIVVSVIMFILFYLSRHLRFKANNKKRNWNMPFMRAPRYKVHIGWLVIFVGAMVLHTLRFMFLDYGIKVIGFSEADSSLLVGSLSAFMAVGSLSSAFCLRFLEKKRVFTIVGILTPAALLLITFTRNFWLFLVAFMFLGFVSGFGYFFGLYYALADQDNAPRNVAVNEALTGVAALFIPFVVGYLASNFSYFVGFLFMMTVSLICYIIAIYIMWQKKRRALLKEKFNKMIDDIDSKYIDKTL
>NZ_CP019600.1|WP_012671119.1|1608286_1608712_+|hypothetical-protein
MYKIYYASVIIILFIISCNDKKLESKQYRLNIAETNEVINIKSRNFDGISLIKNSSFTAYPNITINELLSPFSSVEWQDFISEDDYNRYIDIVARYDTNEYIIQFQVTDQYRWELYAFEINKTPYTIDIVANELYKLYTNK
>NZ_CP019600.1|WP_020064890.1|1608799_1609339_-|hypothetical-protein
MFKKLFIVVGLMSVLAGCETMQPKNNDTIVKNDNSSNEDKKEETITREDTPKMKVTVYGADKEIQAVEINDKTYYVIGGKDVENMTEADIKKSSLVAPLKVTEETINGTRGIVVTYYDVKVFLGKRTGTGTIVGIFEPQKNDWTTGNDLDRSLSIQIKLSRNIAGPIDIKRGSISLAFN
>NZ_CP019600.1|WP_012671121.1|1609494_1610481_+|aldo/keto-reductase
MQAADNRYDNIIYNRCGKSGLKLPIVSLGLWHNFGENCDYNNMKDMVKTAFDNGITHFDLANNYGPPYGSAEISMGKILNDGLNKYRDELIISTKAGYDMWEGPYGNWGSKKYLIASINQSLKRLNLEYVDIFYHHRMDPESPLEETMEALTRIVKSGKALYIGLSNYDGATMEKASKLLYMANVPFIINQNRYSIFDRTIENNGLKLKAKKLGKGIIAYSPLAQGLLTDKYLNGIPSDSRIAADGRYLKHDAITRKRLYKIEQLNNLAKERGESLAQMALRWVLKDEEITSVLIGASKPSQIIENLKIINKMPITDDELRKIDDFSL

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Crispr_ID: NZ_CP019600_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019600_6

1848541-1848629

Orphan

Consensus_repeat	Method
ATTATGATGACTATGAAGATGATTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019600_6

>merge|NZ_CP019600|6|1848541-1848629|CRISPRCasFinder
GAAAAGATGATTATTATGATGACTATGAAGATGATTATGACAGCAGAGTAAGAAATGATAGGAATTATGATGATTATGAAGATGATTAT

>NZ_CP019600|6|5|1848541-1848629|CRISPRCasFinder
GAAAAGATGATTATTATGATGACTAT	GAAGATGATTATGACAGCAGAGTAAGAAATGATAGGA
ATTATGATGATTATGAAGATGATTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019600.1\|WP_047117408.1\|1855994_1857050_+\|5-methylcytosine-specific-restriction-endonuclease-system-specificity-protein-McrC	unknown	unknown	gnl\|CDD\|236618
NZ_CP019600.1\|WP_012671321.1\|1851409_1851670_-\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|284238
NZ_CP019600.1\|WP_012671310.1\|1838839_1839958_+\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_047111081.1\|1841362_1843342_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NZ_CP019600.1\|WP_012671311.1\|1840246_1841143_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP019600.1\|WP_047117409.1\|1846148_1847762_-\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173869
NZ_CP019600.1\|WP_012671314.1\|1844411_1845239_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|225131
NZ_CP019600.1\|WP_012671309.1\|1838100_1838601_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012671327.1\|1858270_1859866_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012671320.1\|1849943_1851227_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP019600.1\|WP_012671308.1\|1837565_1838108_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223970
NZ_CP019600.1\|WP_012671319.1\|1848864_1849377_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012671315.1\|1845668_1845986_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_044555349.1\|1848060_1848261_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_012671326.1\|1857070_1858234_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223496
NZ_CP019600.1\|WP_012671313.1\|1843685_1844342_+\|formamidopyrimidine-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223344
NZ_CP019600.1\|WP_012671322.1\|1851666_1851840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_047111079.1\|1854495_1855800_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|183088
NZ_CP019600.1\|WP_047103562.1\|1852119_1854435_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP019600.1\|WP_012671328.1\|1859880_1860675_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019600.1\|WP_012671321.1\|1851409_1851670_-\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	2.57947e-32
NZ_CP019600.1\|WP_047117408.1\|1855994_1857050_+\|5-methylcytosine-specific-restriction-endonuclease-system-specificity-protein-McrC	gnl\|CDD\|236618	PRK09736, PRK09736, 5-methylcytosine-specific restriction enzyme subunit McrC; Provisional.	6.56475e-154
NZ_CP019600.1\|WP_047111081.1\|1841362_1843342_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP019600.1\|WP_012671311.1\|1840246_1841143_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	5.50814e-75
NZ_CP019600.1\|WP_047103562.1\|1852119_1854435_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.50172e-22
NZ_CP019600.1\|WP_012671314.1\|1844411_1845239_-\|4Fe-4S-binding-protein	gnl\|CDD\|225131	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion].	1.32514e-09
NZ_CP019600.1\|WP_012671320.1\|1849943_1851227_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP019600.1\|WP_012671308.1\|1837565_1838108_-\|amidophosphoribosyltransferase	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.24708e-09
NZ_CP019600.1\|WP_047117409.1\|1846148_1847762_-\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP019600.1\|WP_012671326.1\|1857070_1858234_-\|hypothetical-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	8.09355e-06
NZ_CP019600.1\|WP_012671313.1\|1843685_1844342_+\|formamidopyrimidine-DNA-glycosylase	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	9.33916e-15
NZ_CP019600.1\|WP_047111079.1\|1854495_1855800_+\|AAA-family-ATPase	gnl\|CDD\|183088	PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.	4.85928e-89

>NZ_CP019600.1|WP_044555349.1|1848060_1848261_+|hypothetical-protein
MKKLSLMALVSAFIMTANLYSFDLIEDTFDFIFDDLAKIIGIVVIIAAGVYVFKKYVKKDNNSDDR
>NZ_CP019600.1|WP_047117409.1|1846148_1847762_-|peptide-ABC-transporter-substrate-binding-protein
MKKILIMILSVIMMLLFISCGGKKNEEGAIYINVGPEPKTIDPALNSTVDANIYIQHVFEGLATRDKDNKIVPGVAERWDISEDGLTYTFHIRDNAKWSDGEKITAEDFVYAWQRVVDPVTASEYAYQFEPVLNAMDINSGKKPVSELGIKAIDEKTLEVKLNAPTAYFLELVAFYTFYPVRKDMIEENGDNWTLSPDTYIGNGPFIMTERRTDDRIVVVKNTNYWNVNNIVPKKLVFILMQNGTAAVAGIKEGSLHFANNPPLQDIENLKSEGLMHISPYLGTYYYCLNITNEILKDARVRKALTLAIDRNYLVEQVTRAGQLPASAWVPSGVNDVEGADGDFRKVGGDYYSIKPEDHQKNLEEAKQLLADAGYPNGENFPVIEFKSNSGEHIQIFEAVQQMWKEGLGIDSTIAQEEWATFQTTRQEKNYVIARHGWIADYNDPMSFLGVFLSYSIQNNGGYSNKAYDDKLKLAMSTIDQDIRMKAMHEAEDILMEDMGLIPLYFYTDPIMISKKLSDVIFDPLGAHKFYYAKLAE
>NZ_CP019600.1|WP_012671315.1|1845668_1845986_-|hypothetical-protein
MLLKDRKGLYRGNATIKNFLSFDIDIEALIDEKGEIKVSTIAPIVGKISHSISLGPNYDKDNYDMKFGEDTFHIKFDSNKSIEIELPEKINGSLIVTRNVTLSRT
>NZ_CP019600.1|WP_012671314.1|1844411_1845239_-|4Fe-4S-binding-protein
MKVDKVYSIYYSATGTTQKIVSYIGENIAKKLNVDFEKYNFTLPKKREGILEFKENDLVICGTPTYAGRIPNVMLPYYKNNIKANGALAIPVVLYGNRNFDDSLIELRNTMQENGFYTIAGAGFIGEHAFSYTLGAGRPDDKDMAIAAEFVDKVVEKIKNMTDIPKEPIKVRGNDPIRPYYMPKDKNEHAIDILKVKPKVDTSKCTNCKTCAHVCPLASIDFDDITKYVGKCIKCGACIKKCPEHCRYYDDEGFLYHQHDLEDEFKRRAEPELFY
>NZ_CP019600.1|WP_012671313.1|1843685_1844342_+|formamidopyrimidine-DNA-glycosylase
MKELPNLITLINSIKSEICYSYINKIVAIDKQYKEMEDIEGQKIIDVLRYGGYMHFQFSQDAMLVDLGPNGSFVLTEDDTYENSILKLETDHGNFFVVDDGKDKNEITKIIPIWKDSTTMPQIGYDPLTKQFNYNLFCQLLADNDTTVEKLIKNPLILSGIGNVYGDMILKKASITKKTKTSDVTKVKAREIFDAIKQVLREASGNTEEEDGDSSEEE
>NZ_CP019600.1|WP_047111081.1|1841362_1843342_+|UvrD-helicase-domain-containing-protein
MDILENVSEVQREGILHTGSPLLLLAGAGSGKTLVITRKIAYLINELEVVPENIMAVTFTNKAAHEMKERVCSLLPDIKPSRLFIRTFHSACLRILKENAHFLGYKSNFLILDEGDKASVIKRIMKEEEVPKSIGQKLITRFISNVKNGMDDGIVFDRDIFENVYKKYTEYEFNENVMDFDDLILNTIKLFETENKVLNYYRNRFKYILVDEFQDTNPQQYKLIKLLTQDAENDLTVVGDDDQSIYAFRGADVLNILDFEKDYPNTKIVRLEENYRCPKDIVEAALSVIKNNSNRHEKNVFSNKPNEFKIENWICYSDLEEARSVVNEIESLFDNGFEARDIVVLFRTNSQSRAYEKELRLHSINYKIVGGVGFFERIEIKDSISFLRLMTGFGDNFSVRRTINVPPRGIGEKSFNNFETFANSRKLTLYNAIDYIDESGLSKKAILNIKAYKNIIEEYAVKIKEDIINEDGIHIELLFFEFLKDIDYFSIFKGDGNERVITAEENIKELFRGFYDYKSMEANATLITFLEENTLYRDLNTNDDKEDYITLMTIHNAKGLEFDVVFITGMEQGVFPHYFSLEEEKGIDEERRLCYVGITRARRKLYLTYSKKRRVSTGIMEQIPSSFLLEIPKKLMLIKEKANYYSGNYMDIDEDAFDY
>NZ_CP019600.1|WP_012671311.1|1840246_1841143_-|fumarylacetoacetate-hydrolase-family-protein
MKLVSFVEWNNTESVGILSKDGKKVIAINEIISDFKCYSNPMIQLINMINENNDILNKLKYAEENFERAYSIDNVKILSPIRKPIHDIICVGVNYSDHLGEIKKDMKDFKEVKAPVYFSKRAIEIIGFGDKIKARFDLDECLDYEVELAVIIGKTAKDIKPEEVNDYIFGYSIFNDISSRNIQKEHSQWYKGKSLDSYSAMGPCIVHKDDFKLPLKLDIKSILNDEVRQSSNTKYMIHDINYLVSDISKGMTLEAGDIIATGTPGGVGMSFNPPKYMKSGDKIICSIENIGELINFAE
>NZ_CP019600.1|WP_012671310.1|1838839_1839958_+|DUF3800-domain-containing-protein
MSYTIYLDESCQTGADLLNKEQTHLVYSGILIDDNDYKNIIDYINNNTKIKRGIEKKDNYFFEKEDGINLFNEISKYKNSKLYATIVNKKYIVSNYVISTFFNFTEFFNFINFMKLFNFRNFINMNIEDLEIKLKKLQDDMSNTLHNHLSANINDNSIIENFYEQIRNNNLSLDMLEDIKLILLKIFSNKDMHSYINNINTQDILNKSLNMKNNNILNPNNFMHDILLDFLIKVNKYNSNINIVHDQRSDIKKVFDNLKNNYYQYIKNINPNFIVADSKFEILIQFADLSCRFIRKQFDNNIIKDEIKKLICKHFFQNDSFIQLRFFTLYEEENNFYKKLGKNINLNIDSSFNNFELYLFLVQIKYIGMNLF
>NZ_CP019600.1|WP_012671309.1|1838100_1838601_-|hypothetical-protein
MRTLSLRKINVNIFILFLLSIISLASPIITHYFGFKGTEFLPIFFALSLGAYILNPIFLIMLSFISPLLNYFLTNMPMPPTLYFLILEGLVFSIVISLMKNKNISFILTSLLALILGRLSSVILTFIFDISINTWLNGVILGYKGIIVNWIFASVMYLILKDKINE
>NZ_CP019600.1|WP_012671308.1|1837565_1838108_-|amidophosphoribosyltransferase
MNNIFTAYKKFSIDNIDITALGDLDKELGDELRAFKKKSIDFPTKITEQIKNYYSDYIKTNNKKFDIILYVPSNKNNGVMDFFADYISKEFDIKKCEFIKINKNIKEQKFLETLKERSENIKDAFEIINYDKLKNKNILLIDDVYASGETIKEIIKIFKGFQFNYNLEILIFCYRNHIFR
>NZ_CP019600.1|WP_012671319.1|1848864_1849377_+|hypothetical-protein
MKNNIMSVVKSKKFIIISASIAAAALFISAVRFLGLQYYMFYLIHDFDEFLEALLKIAVFAVMVMFAIVLFKKIDSKDNKQSKESESNNEKKDLIVVKDKNNKSKSLIIIFAVIGILALISLFVFYSRFFGMHYMLYNLDDIVEGIFQLAVVIAVIGFGAVFAKKLLEKL
>NZ_CP019600.1|WP_012671320.1|1849943_1851227_-|adenylosuccinate-synthase
MASVIIVGTQWGDEGKGKIVDYLAENCEYVVRSQGGSNAGHTVVVDNIKYKLRLLPSGILHKDKVCVIGNGVVIEPKVFLSEIDSLIEKKVNISNLKISDRAHVLMPYHKILDELQEEDLGENKLGTTKNGIGPCYMDKSSRLGIRIVDLMNKETFAKKLKFNVELKNKLLKKLYNHDGVNYDELLKEYLGYAEKLRPFVADTTTILNKAIKEKKNILFEGAQATMLDLDHGTYPFVTSSYPAAGGACTGSGVGPRKIDNVIGVVKAYATRVGEGPFPSELFDDVGQFIRDKGGEYGTVTGRARRCGWLDACVVKYASYVNGLDSIAITRLDILDELDKLKICVAYKYNSEILEGYPADLDILSKVEPVYEEFEGWKTSTRDIREYDKLPENAKKYLKRLSEVIETDISIVSVGAGRDETIIVKKIF
>NZ_CP019600.1|WP_012671321.1|1851409_1851670_-|Txe/YoeB-family-addiction-module-toxin
MKIVFNERAWQEYIEWVSEDKKIVKKINDLIKDIIRNPCDGIGKAEKLKYDKKDLYSRRINKEHRLVYHIENNQLIITSCKYHYDK
>NZ_CP019600.1|WP_012671322.1|1851666_1851840_-|hypothetical-protein
MTVKEELIQIIDNMPEEKVNNVLDFIKKEKYLDEAIKLEENGQVYVKTIEELEEFEK
>NZ_CP019600.1|WP_047103562.1|1852119_1854435_+|tetratricopeptide-repeat-protein
MTEELKTKIHKLILEKKFTEIIKLCDEAIEKDDKDEYAYFIRANCYFDLKNYDMVIENLNKSIELNPNNEKAYFNRGFIESNLEMYEESINDYTKVTELNPNDEKAYFNRGLIKSNLEMYKEAIDDYTKVIELNPNNEIAYINRGFAKSNLEMYEEAIHDYINVIELNPNNKLAYINIGFTKSDLKMYEEAIYYFNKSIELDPNDKISYISRGFSKLNLKMYEEAIKDFDKVIELNPNDESAYFNRALSKLNLEIYEEAIKDFTKVIEANNKNEYAYLLIVFAQINLKKYRESINYIDKAIELNNNRYWYYLRFLSKINLGKYNEAINDINNFIQLDKIHLKIPCVILIFQVLEKYYNIDQLFILLTDINNNNLWENEPITNLISRFDESKKFDDELRKNIKYLLLYEYFLLKILTFDTEEENNIEISHYTSLDILPLLLNVKGNTKESGNIRINNITTANDPKEGKILERILNKNNINIKIENDEKALTLQTSYSRNKDSLTMFRLYGKKENKEATGVCLVLDNKYFNNSYTSPYSYEYESKINYAIMKELKSSIKVDENKTVNDIDSEEIPFIQKRNLYWVLYYNEKENQLIYNKEKSKYASNIIDLNDLNSPNYKAELKEDDKKEDMIKYAFAKIFHYTKEIKKQIEDPKNNENYKNIKNQLYSYLFENIKYIIKHEAFFEEQELRMLVTNDYKSDEILIDNDNKKLYIDYIKLFDENNNFIKEIIIGSKVENNEAVAEYIRKVLHSKNTEMNKLDDIKVSISEAPLR
>NZ_CP019600.1|WP_047111079.1|1854495_1855800_+|AAA-family-ATPase
MKEELSNEQLESIYDVMEKIYKREIKRIEGINECLKIDVKGIYKYSSFNFLYGIYRCMREGRVYKRSFKLNVLKFIIEKIGIKYGIEELEKALISTREYIKYHYPFNKDKSENLVDACKKIVEKNKLDISFDDLFEDDKTDEEEITQTNDKSDNSYTKDDFLNEVFISEEKYNTICNLLNRKKNIIFQGSPGVGKTFMAKKLAYSIIGEADDDKIKMIQFHESYSYEDFIIGYKPTDKNFELKNGVFYDFCQKAASDMDNEYFFIIDEINRGNISKIFGELLMLIESDNRDAEIILSYNNESFTVPNNLYIIGMMNTADRSIAVIDYALRRRFCFIDIEPAFENEKFKNYLKNQNVNDNLINKIIEKFTDLNNIIKKDRTLGKGYTIGHSYFCDKLDNEEYKNIIEYEIAPTLREYWFDNEDKAEKEIEKLFYI
>NZ_CP019600.1|WP_047117408.1|1855994_1857050_+|5-methylcytosine-specific-restriction-endonuclease-system-specificity-protein-McrC
MSNNIKIPIKNIYYMLSYAWNVWNIIDENNEDNKKEIFGDEKFDNIYNVMAYILNMFLDKLIKRGFYKGYITLEEDLSVLKGKINFSKSIKRNTINYKKLVCSYNILSNDILFNQIIKSTLNKLINYKNIDNDILEKLIRLNHYFIKIKNINVNNSTFKLLKYNRNNMHYKIIINICKFIHKHLIVNKNSDEYSFIDFNEEKRMHMLYEKFVLNFYKMHFRNDINIKVKNKSINWQINNNEYIPIMKTDTMIYNKEKCLIIDTKFYKNILIKNNDKISIRSSHLYQMFSYMSNVNKKFKTIKGVLLYPLCYDNINKEYKIHDKYFDVNTLNLKSDFDIIQEQLINIVKDYF
>NZ_CP019600.1|WP_012671326.1|1857070_1858234_-|hypothetical-protein
MNNNLNKNISDTNKELQNIENSIKKINSSFESSLFFNDSSNKFNDFTISAEEANKAIDNTSSSINSLDESIKSINIKNFTDGIKDSLSSVSSIYKDLSASFSDFFHYDLSSYDNAIEEAKNKLQEFDDYQRELKENKKLEDDEDYENYLARLDEELELAIENKDAMSAEAIRIKKEELKKKQDKEKEDLQKEKEIKTQRELLEKELAQAEYNKSYTEWDNNVKLAEMEKSKAIADAVLIPSLAIAQSALGVASSFAQGGPAGFAAGLIISATAISSAISAASGIVSSANALDAIKSNPPQAPQFAFGTTGYTIPDGGSAIVGEMGAELVSNKSGRITVQSNAQLKEQNFSKGDIWNVTINVEQALNPDEVYRLMNSYKARNSQMYSR
>NZ_CP019600.1|WP_012671327.1|1858270_1859866_-|hypothetical-protein
MMKKMPYHFLRNKIYKLPPAPYINFEDFGTYIKINGNIYSENAYNTYSSYEFKVNKRGGDVSKVSFSTPLNYFNINDKVEYYLNGKKRFAGYVESIDNAGLNLSIIPIWGKLLHQYIQGDLILEATKGALDIVLSLKEKIEEMNIIFDEKNITINNDKQITMSFSGKNISDILDEVEESLSDTWCWGVDFDGYFYFKEFSDIPTKKLNWHNNDFSDSEYEEDSADLVSRYIIKMKDTITDDEGNEEEVYRTLPKIVGADKLYPQIPLEKEIGIKTDIFEIEYKLENYDLAYEFAYQFLTNQTKKEIVKIKTLNSKNYDLNINECIECILKPTNNFYQIIDFNDFTETESRLNEVYSSDIIDIDSSIEYRKYPNYKQQQSVTLTDIDRYYKQICNQSYNITKIVIFFSDGIQDDSIESSNDSAVFQIEDKEHFQRKYFTNGFGVFDVRGYDKRNIIITSERGNILYDKFICFFDIGSRVVDMNVRTIDYKFEKNALNIDLELAKMNINLTNYLYNQEERRKNLERILNSSGF
>NZ_CP019600.1|WP_012671328.1|1859880_1860675_-|hypothetical-protein
MAFDFKLIVRDKYSEEIFDIINTVQSIKADDIKTDYKVTDGSRSYSIKTGIGNIASGRTFNIGIPIYEYKNELGSWVRIEEQYTKYTSMVLSSNIKRYFIRTIFEDEVYEAEYIMKSVGGYNIKYINNLGVIDISLEALDKVFLRQKEEEYELPITEENKQDINYKSLSLVPVPVNFNLEFIVVGGALEFLFANRQNFGIQFNAELRNGVYNIDFDGEKLNVNGVAYNYKGVQPELNVGNNVFYLESNQTCVKASISYKRGILI

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Crispr_ID: NZ_CP019600_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019600_7

2254717-2254813

Orphan

Consensus_repeat	Method
CAATTTTTATTAGCAACAATATAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019600_7

>merge|NZ_CP019600|7|2254717-2254813|CRISPRCasFinder
CAATTTTTATTAGCAACAATATAAAAATTGTGAGCGTCTGGCAAGTTTACTTGACAGACCCGATTAGCGAACAATTTTTATTAGCAACAATAGAAAA

>NZ_CP019600|7|6|2254717-2254813|CRISPRCasFinder
CAATTTTTATTAGCAACAATATAAAA	ATTGTGAGCGTCTGGCAAGTTTACTTGACAGACCCGATTAGCGAA
CAATTTTTATTAGCAACAATAGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019600.1\|WP_012671682.1\|2250031_2250673_+\|ATP-synthase-F1-subunit-delta	unknown	unknown	gnl\|CDD\|365949
NZ_CP019600.1\|WP_101638582.1\|2266397_2267873_-\|SurA-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379299
NZ_CP019600.1\|WP_101638579.1\|2247712_2248624_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|376294
NZ_CP019600.1\|WP_012671684.1\|2252262_2253141_+\|ATP-synthase-F1-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP019600.1\|WP_047111493.1\|2259073_2260252_+\|RNA-splicing-ligase-RtcB	unknown	unknown	gnl\|CDD\|376465
NZ_CP019600.1\|WP_012671680.1\|2248917_2249421_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|349951
NZ_CP019600.1\|WP_047103426.1\|2264711_2265251_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP019600.1\|WP_012671678.1\|2247233_2247569_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP019600.1\|WP_044555383.1\|2255863_2256625_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP019600.1\|WP_012671681.1\|2249457_2250006_+\|ATP-synthase-F1-subunit-delta	unknown	unknown	gnl\|CDD\|365949
NZ_CP019600.1\|WP_101638581.1\|2262851_2264657_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP019600.1\|WP_008723511.1\|2248660_2248882_+\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|349414
NZ_CP019600.1\|WP_020064483.1\|2250699_2252199_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_CP019600.1\|WP_012671677.1\|2246209_2246938_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP019600.1\|WP_047111495.1\|2257958_2258867_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP019600.1\|WP_047110033.1\|2256858_2257569_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP019600.1\|WP_012671685.1\|2253783_2254524_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP019600.1\|WP_012671696.1\|2265940_2266309_+\|DMT-family-protein	unknown	unknown	gnl\|CDD\|377316
NZ_CP019600.1\|WP_012671693.1\|2260534_2262694_+\|PTS-transporter-subunit-IIABC	unknown	unknown	gnl\|CDD\|273923
NZ_CP019600.1\|WP_101638580.1\|2254871_2255636_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786

Protein	Function_ID	Function_description	E-value
NZ_CP019600.1\|WP_012671682.1\|2250031_2250673_+\|ATP-synthase-F1-subunit-delta	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	8.54364e-33
NZ_CP019600.1\|WP_101638582.1\|2266397_2267873_-\|SurA-N-terminal-domain-containing-protein	gnl\|CDD\|379299	pfam13623, SurA_N_2, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	8.37339e-09
NZ_CP019600.1\|WP_101638579.1\|2247712_2248624_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|376294	pfam00119, ATP-synt_A, ATP synthase A chain.	1.70779e-47
NZ_CP019600.1\|WP_012671684.1\|2252262_2253141_+\|ATP-synthase-F1-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	2.94579e-85
NZ_CP019600.1\|WP_047111493.1\|2259073_2260252_+\|RNA-splicing-ligase-RtcB	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	6.5666e-70
NZ_CP019600.1\|WP_012671680.1\|2248917_2249421_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|349951	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b. Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.	1.07498e-27
NZ_CP019600.1\|WP_047103426.1\|2264711_2265251_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.6038e-30
NZ_CP019600.1\|WP_012671678.1\|2247233_2247569_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	4.66604e-28
NZ_CP019600.1\|WP_044555383.1\|2255863_2256625_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.7812e-20
NZ_CP019600.1\|WP_012671681.1\|2249457_2250006_+\|ATP-synthase-F1-subunit-delta	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	3.37691e-33
NZ_CP019600.1\|WP_101638581.1\|2262851_2264657_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	9.64199e-49
NZ_CP019600.1\|WP_008723511.1\|2248660_2248882_+\|ATP-synthase-F0-subunit-C	gnl\|CDD\|349414	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c. Subunit c (also called subunit 9, or proteolipid) of the Fo complex of F-ATP synthase. The F-ATP synthase (also called FoF1-ATPase) consists of two structural domains: the F1 (factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons though the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Methanosarcina acetivorans.	1.18648e-14
NZ_CP019600.1\|WP_020064483.1\|2250699_2252199_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP019600.1\|WP_012671677.1\|2246209_2246938_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	5.3809e-09
NZ_CP019600.1\|WP_047111495.1\|2257958_2258867_-\|radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.18867e-24
NZ_CP019600.1\|WP_047110033.1\|2256858_2257569_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.30771e-15
NZ_CP019600.1\|WP_012671685.1\|2253783_2254524_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.32814e-20
NZ_CP019600.1\|WP_012671696.1\|2265940_2266309_+\|DMT-family-protein	gnl\|CDD\|377316	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486). This family contains several proteins of uncharacterized function. The family is represented in the Transport classification database as 2.A.7.34, though the exact nature of what is transported is not known.	1.33922e-50
NZ_CP019600.1\|WP_012671693.1\|2260534_2262694_+\|PTS-transporter-subunit-IIABC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.14588e-170
NZ_CP019600.1\|WP_101638580.1\|2254871_2255636_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	6.77153e-20

>NZ_CP019600.1|WP_012671685.1|2253783_2254524_+|ankyrin-repeat-domain-containing-protein
MKKMLLISFVLMITFIVSCGKKEEASISNNSVYVSDPNNIYHKTYTNVVKIQGKFVNINPAFYYGNRKEGEYSEEYDIFEAIKNHSLKRVMELIEDGEDINQNDRDFIIHSELMDANYFIEGSTPLIFAVFYRDLGVMKYLLDNGADPYIKDDSSKNSFLWACGVGNVDVIKMLVEFDSDLVDSQDRFGLNGLHMAAWNDNVEVFEYLINDLGMDINSTDEHGNGVLYYATEYATLEKLRELGAEE
>NZ_CP019600.1|WP_012671684.1|2252262_2253141_+|ATP-synthase-F1-subunit-gamma
MAEKLNVLKARIKAVSSTHKITKTMDMIARSRTAKILTVEQGMRPFTQKLNRIVEDLSHSDMDHVHPLLAPKKKIKNIILFVVTSSRGLCGSYNTKIFDEAMERIRHHHRHGREVQLHVLGKKGEVYFEKQGIPIARKYPRIDEESTFDDCATVVQRFMHEYAVDNASRVEVIYTRYYTRVVHIPKIKSLIPMIPDEEDIEGHKIKKKLDYVIEPNVDDVLKEVVPMAIKTYFYFMLTSSFLSENAERAIAMRNATDNAERLLTDLKNKANRARQEHITNELLDIIGGSEAI
>NZ_CP019600.1|WP_020064483.1|2250699_2252199_+|F0F1-ATP-synthase-subunit-alpha
MNIKASEIAAVLKEEIKNYKADFTPNEVGVVVEVGDGIARIIGLPHVMANEMILFESGAVGLAFNLEEETIGAIVLGDYYGIKEGSKVSRLKRILEVPVGDALLGRVVNPLGVPIDGHGEITTDKRRVIEFPAPGIADRQAVKQPLQTGIKAIDSMTPIGRGQRQLIIGDRGTGKTSIALDAIINQKGTGVICIYVAIGQKASTVAGVVDTLRQHGALEYTIVVAATAADSAPLQYIAPYAGCAMAEYFMYEQKKDTLIIYDDLTKQANAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQDNEVSAYIPTNVISITDGQIYLLTSLFMSGVRPAIDVGISVSRVGGNAQTKAMKKVAGTLRLDLASYRSLEAFSQLGIGLDKATLAQLDRGAKMVELLKQKQYSPIPFEEQVVVIFAATKGFLDNIEVDRVHEFEWRLLQYMRADKQNILDDIREKKDIEDMDGLYKIIEEFKSKF
>NZ_CP019600.1|WP_012671682.1|2250031_2250673_+|ATP-synthase-F1-subunit-delta
MDPIAENILSDLKKEVLREVTREKASRFSRIVKNESSAKNYAKAMFDIASDIGKIEVIKSDLNVVYSSLLVDNDIFNFFKSSFIDGHLRMRILKKIYADKILEETFNLIAILVERDMINILFAIIVEYENLCNEYYNIIVVKITTASNMTDTEDMNKLKDHITNMISDKDIHFTFNIDENIIGGVVIEVEDVVYDYSVRRLLTELKSSISENN
>NZ_CP019600.1|WP_012671681.1|2249457_2250006_+|ATP-synthase-F1-subunit-delta
MKESDKLQILKPTASAIFDIARELGMIKEIYNELSECSKLFQDIDIKKYFFDKSISKKDKKELIDKRLKPILSKETYAFVSILTEHDSIDVLPDIVALYKEIADDYSNIVRVRIITASTIDDKTVEDIIQTVKCFSSNEISYETIVDENIIGGIIVYIGSVVYDYSIKKQIDLLQSKFTYGN
>NZ_CP019600.1|WP_012671680.1|2248917_2249421_+|F0F1-ATP-synthase-subunit-B
MALLKIDPGIIIWTWITFLLVLAILGASTWKIILKGLNARADKIQEDLEEAEKTRENAKKSLAAYREQIDNAKVEASAIIENARVEANRIRDKIINNAREEAELNKNKIMSEIDRSKEEAMNSVKKQALDIAVVMAETILKRNINKEDNQALINEFINNANKENSQK
>NZ_CP019600.1|WP_008723511.1|2248660_2248882_+|ATP-synthase-F0-subunit-C
MELSILGAAIGAGLAAIGVGLGIGFIGSRAVEGIARQPEVSGKIQTAMLIAAALIEGVGLFALVICILALFTK
>NZ_CP019600.1|WP_101638579.1|2247712_2248624_+|F0F1-ATP-synthase-subunit-A
MIKELFLLRKVFILTLILSCVFSVNVLYGAETINDYIMEEITDNTSHPFYTIPIKFGKYIDFDFKITKHIILVTLAGILSVCSMKYLAHKLKRPLNRPTYLQSILEGLIDYMNKDVIGATLGEEGKKYVPFCLTVFLFVLFSNILGLIPASIKFPTEYGNHSYIAGGLGANIGFTAAIAIVVFIVYIVAGIRKKGIIKYWTSLVPKGLPIPLIPIIWVLEFITLFNRAFALAIRLFANITGGHIMMIVIPYLIVMSGTLLVSPFAVLFLGFIYVLEMFVAVLQAYIFSLLSAVYIGIAISDEH
>NZ_CP019600.1|WP_012671678.1|2247233_2247569_+|STAS-domain-containing-protein
MEVNIKELENNTVILKLDGDIDVYTSSDLKDSIFSQIELGAKKIIIDMEDVYYIDSSGIGVFISALGTFKKVNGKICFVKVTDPVKKVFELTKINSFFPVFTTETEALANF
>NZ_CP019600.1|WP_012671677.1|2246209_2246938_-|TetR/AcrR-family-transcriptional-regulator
MPKVNQEYFENKRKIILDAAMSVFFKKPAYSVRMKDIVKESGLSQGGVYKYYSNIDEIVIALINSNKTEVNPRDIIENYYDEPEKAIFELFDAFRKFFFITAKEFGKIMFELQAMFFNSKERMQKLKDNINKDLVLNYWFSELLIFIDKKIDEKYFNPVIDPQDIYMQMIVAASGIGNELILNKYYNLDRKLYYYKGDEENIYHGEAGRTLDVNLDNLIDTLYKTLLLLLGSKNIHKYSFKN
>NZ_CP019600.1|WP_101638580.1|2254871_2255636_+|ankyrin-repeat-domain-containing-protein
MKSIKISKSVLLVSLLSIILIVSCGKKEEPSVSISNNSVYVSDPNNIYHKTYTNVVKVQGKYVSMNAAFSYGNRKEGEYSEEYDIFEAIQNHSLKRVQELIEEEGEDIDQTYFGDSLYSEFMDDSYAIDGGTPLIFAVFYRDLGIMKYLLDKGADPYIKDDDSWNAFLWACGTGNVDVIKMLVQSDSYLVNSKNMYDANGLHMAALNDNVEVFEYLVNDLGININSTDEDGDGVLYYANEDAALEKLRELGAEE
>NZ_CP019600.1|WP_044555383.1|2255863_2256625_+|ankyrin-repeat-domain-containing-protein
MRRYMKKFLFISFVLMITFIISCGKKEEASVSISNNSVYVSDPNNIYHKTYTNVVKVQGKYVSMNAAFSYGNRKEGEYSEDYDIFEAIQNHSLKRVQELVEEEGEDIDQTYLGDSLYSEFMDDSYAINGATPLIFAIFYRDLGIMKYLLDKGADPYIKDDDGWNSFLWACGTGNVNVIKMLVEFDSDLVDSKNIYQGNGLHVAAMYDNVEVFEYLVNDLGIDINSTDEDGDGVLYYAEKDEAIEKLRELGAEE
>NZ_CP019600.1|WP_047110033.1|2256858_2257569_+|ankyrin-repeat-domain-containing-protein
MKKLLLISFVLMFTLLISCGKKEEDIISNANNLDNKIDTNVVKVKGKYVNMNSDFSYGNREEGEYSKDYDIFEAIENHSLKRVIELIEEGEDINQTYSGGKKYSELLNNDYYLDGATPLMFAVFYRDLGIMKYLLDKGADPNIIQDEYGRNVFLLACGFGNVDVIKMIVDFDSDLVDSVSSRDENGLDMAYLYGNIEVFEYLVNTLGLTTDILDNVDEEDPYENTEDIKKLRELLN
>NZ_CP019600.1|WP_047111495.1|2257958_2258867_-|radical-SAM-protein
MLKYREINCKSALNKIDNEYGFCYDLNIYRGCLHKCYYCFAVYSHKYINSKDFFGEIFVKKNIAEVLEKELSSRNWNRDIINLGSVTDNYQEAEKDYKLMRDVLKLLIRYKTPMCISTKSNLILRDFDLIDELSSIVPVRIASTITTLDEKLSSLIEPNVISPEKRFNMLREFKKTKAIVAVHAMPIMPFITEDSIEDIFKKVKEYEIDYCAADALKLRGECRKIYLNFVRQVFPEHYKKYLYIYDSDGILKDEYREKLYKKIKSLEEKYNITYKTKEELNTEDSVYNRYNNKVIEEAPTLF
>NZ_CP019600.1|WP_047111493.1|2259073_2260252_+|RNA-splicing-ligase-RtcB
MIELKGKYNKDCKIFTDNIDEESYSVLYKILNEKASEDVKIRIMPDTHLGKGIVVGFTMPLTDRVNPFHIGVDIGCGMLTSKLSDEIKDIPLEKIDKTIKQNIPMGIKIHKKSFNTLFNFKELNELIRNFILNYNKKFNTKFEVFEIDNEYIEKLCQRVEIDLEKFHNSIGTLGGGNHFIEIGKSSNNDYYITIHSGSRNFGNQVCRYHAKIAKNSEDCYLHDKEMFDYLIDMVIAQYYAKINRDTILKIIKDLLNIEIENSFSSVHNFIDFEDFIIRKGAIRSYENEKMIIPFNMRDGILICEGKSNEDWNCSAPHGAGRVLSRAQAKNQLNMSEFIDSMKGIYSSSICKNTLDESPMAYKNPNEIEKLIEPTVNIIDKIKPVLNIKSTSK
>NZ_CP019600.1|WP_012671693.1|2260534_2262694_+|PTS-transporter-subunit-IIABC
MKDKIFGVLQRVGRSFMLPIAVLPVAGLFLGIGSSLTNTTMLETYNLIGILGPGTIAYDILSVLSEAGNIIFGNLPIIFAMSVAIGMAKKEKEVAALSGAIAFFVMHASIGKMITVMGGADKLLAGSTTNVVGILSLQMGVFGGIIVGLGVAALHNKYYTIELPQVLSFFGGTRFVPIISSIVFLVVGILMYYVWPPVQVVMNKLGDLIAGSGYIGTLFYGIIERALIPFGLHHVFYTPLWQTSLGGTMMIDGNLVEGAQNIFFAQLGSPTTTAFSVEATRFMTGKFPFMIFGLPGAALAMYRTSRPEKRQVVGALLFSAALTAMLTGITEPIEFTFIFVAPIFYAIHCVLAGISFMLMHILHVTVGMTFSGGFIDLLLFGIIQGNAKTNWIWIVVVGAAYFFIYYFLFSTLIKKFDWKTPGREPDSEEPKLYRRADVAAAKAAASGESVDTNPLFQYEEAPLITAGLGGKKNISDVDCCATRLRITVFDPSKVVDATLKASGAAGIIKKGNGIQVIYGPKVTVIKSRLEDYLHDPISDQEVQAPADTPKAEEKKEEKKEAVKTSSSSAAYKVYAPIKGNIIKLESVKDEAFSSGAMGKGIAIEPKEGKVYAPYDGVIETAFPTKHAIGLTSDDGVELLIHVGMDTVKLGGAHFISHIEEGQKVKKGDLLLEFDVEKIREEGYPTLTPVIVTNSDDYTDVITINAASVNVGDDLIEVKK
>NZ_CP019600.1|WP_101638581.1|2262851_2264657_+|methyl-accepting-chemotaxis-protein
MENKKKKYVLMLKFLIPFAIFIIIVVIGLMLYFIPRYKKEFLLEIESNIYKKESSVSSWLSYFYSEIDVLSSYCKYETDYNQMLDSFKELEKIKDEISNIHFSGTVGYKYGGLLVIVYGDNIEGFDQTTREWYIEAVKNPSSIYLSTPYQDAETKETVITISKAIFENNQLKGVVGLDISFSKISKVLTADKDNKFFIALDDGRFITHTDSNLLFNDQRNIYTELNAPKLNGEIYNVILGKKEWTAVYTIPNTPLLLVGNGSSVSLANKTLTLSIIMVIVAIGFLVIQFMLVLLNVNPLSQTLDRAIEVIKNMTNKHFNAVFDERLLNKSDQTGVLVNSIKDMQKSLGDSIHFFQESLNFINHEIDAVSDGTVNLADRSNTQASSLEELSSLIESLSTSLDETNVHSEDARNMSAKVADATKVGVESSSEITSSMNEILESSKKISDMTKLIQSIAFQTNILALNAAVEAARAGEQGKGFAVVASEIRSLAQNVDETAKNITTTINDALTKVEIGNKAVENSSKILSEIETLAQDMLNKLTSISERAVIEADSINQINVSVRQLNSITSENSTLAESNANSTKEVREKIENMVDRISSFKF
>NZ_CP019600.1|WP_047103426.1|2264711_2265251_-|GNAT-family-N-acetyltransferase
MKKILETDRLILRELEYNKFDYAGLSSILQDKETMYAYEHAFSDDEVNQWFNNQINRYKTYGFGLWACILKENNEFIGQCGLTLQKVDKKIYDSYELLEIGYLFNKNYWHKGFATEAAIACKNYAFNVLKEKRVYSIIRDNNKSSQKVAIRNGMKIIDNIVKHYYNIDMPHYIFCAENI
>NZ_CP019600.1|WP_012671696.1|2265940_2266309_+|DMT-family-protein
MKAITTIVLLILSNTFMTIAWYGHLKFSEMKGFAKLSLPLIILISWGIALFEYCFQVPANRIGFQGNGGPFSLMQLKVMQEVITLTIFTIFTVVFFKTETLRINHFIGFLCLILAVFFIFKK
>NZ_CP019600.1|WP_101638582.1|2266397_2267873_-|SurA-N-terminal-domain-containing-protein
MSSNKKFVPKKKSPVIKTLQWLGVSAVSILLIIYFLVVDTRGSQKTPTIGSVNGKPIYYTSTSPYGRAFRQIEGYYQQLGIQINNEMYTYIEDLAFRRAVSTMLLNDVARKNINVSDNFVVEAMKSQFIDTNGVYNQMAYESFIKNSSQSEKVKIEKDLKEDILSQTVSAELFTSVKLNDLEMQREYKKNLTKRDIEMVYINASEIVQSNQVADADLEKYFTDNKTNFAQADISWIITQSGGVADNLYKSLKADISLFEKTAMEKSFDTNNYKLGYLTRMQMPNEDFANKIFANNNNTKGSNLLQPIYANGYYYIVLVNDIRIPEKYTDVNKEVLRREYLNANMNTLLEAEKTKQAEVLKAAVANVNNLARLNGNGLIKYYKPAQPFSYNQGRLNTAEGAIIPDSTTESFYMHVFSMQTNQVSDVIKLDNGVAVIRLVSEEKPNMATLTTLDAATKNAVKRELSMQRMNLIQIEWENQHIADARVKKHNLR

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Crispr_ID: NZ_CP019600_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019600_8

2681510-2681609

Orphan

Consensus_repeat	Method
TTAATAAAAATATATCATTATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019600_8

>merge|NZ_CP019600|8|2681510-2681609|CRISPRCasFinder
ATAATAGAAATAATTAATAAAAATATATCATTATAATATATAAATATACTATATTTTATAACAAAAAAGATTAAAAGTTAATAAAAATATATCATTTTAA

>NZ_CP019600|8|7|2681510-2681609|CRISPRCasFinder
ATAATAGAAATAATTAATAAAAA	TATATCATTATAATATATAAATATACTATATTTTATAACAAAAAAGATTAAAAG
TTAATAAAAATATATCATTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019600.1\|WP_101638615.1\|2686265_2687255_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NZ_CP019600.1\|WP_012672076.1\|2687314_2687965_+\|type-A-chloramphenicol-O-acetyltransferase	unknown	unknown	gnl\|CDD\|366012
NZ_CP019600.1\|WP_012672066.1\|2670893_2672234_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NZ_CP019600.1\|WP_101638612.1\|2666916_2669811_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP019600.1\|WP_047109365.1\|2670343_2670793_+\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP019600.1\|WP_047109366.1\|2672289_2675052_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP019600.1\|WP_020064135.1\|2690902_2691106_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019600.1\|WP_008724208.1\|2690465_2690654_-\|YjfB-family-protein	unknown	unknown	gnl\|CDD\|379452
NZ_CP019600.1\|WP_012672064.1\|2669923_2670307_+\|rod-binding-protein	unknown	unknown	gnl\|CDD\|378407
NZ_CP019600.1\|WP_047104919.1\|2677269_2679420_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235516
NZ_CP019600.1\|WP_047101138.1\|2679462_2680737_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|376794
NZ_CP019600.1\|WP_173425795.1\|2689899_2690262_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP019600.1\|WP_012672084.1\|2693236_2693842_+\|metal-sensing-transcriptional-repressor	unknown	unknown	gnl\|CDD\|238089
NZ_CP019600.1\|WP_047103158.1\|2676376_2677324_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_CP019600.1\|WP_012672083.1\|2691360_2693049_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
NZ_CP019600.1\|WP_047103155.1\|2689344_2689890_+\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|376894
NZ_CP019600.1\|WP_101638614.1\|2685117_2686236_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP019600.1\|WP_047101143.1\|2688092_2689334_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380172
NZ_CP019600.1\|WP_012672072.1\|2680733_2681447_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP019600.1\|WP_047103159.1\|2675727_2676204_+\|GrpB-family-protein	unknown	unknown	gnl\|CDD\|377252

Protein	Function_ID	Function_description	E-value
NZ_CP019600.1\|WP_101638615.1\|2686265_2687255_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.84867e-48
NZ_CP019600.1\|WP_012672076.1\|2687314_2687965_+\|type-A-chloramphenicol-O-acetyltransferase	gnl\|CDD\|366012	pfam00302, CAT, Chloramphenicol acetyltransferase.	5.33422e-86
NZ_CP019600.1\|WP_012672066.1\|2670893_2672234_+\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	7.79328e-11
NZ_CP019600.1\|WP_101638612.1\|2666916_2669811_+\|chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.09558e-32
NZ_CP019600.1\|WP_047109365.1\|2670343_2670793_+\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	2.40026e-15
NZ_CP019600.1\|WP_047109366.1\|2672289_2675052_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP019600.1\|WP_008724208.1\|2690465_2690654_-\|YjfB-family-protein	gnl\|CDD\|379452	pfam14070, YjfB_motility, Putative motility protein. This family of proteins is regulated in B. subtilis by SigD, and is likely to be involved in motility or flagellin production, Proteins in this family are approximately 60 amino acids in length, and contain two highly conserved asparagine residues.	0.00640947
NZ_CP019600.1\|WP_012672064.1\|2669923_2670307_+\|rod-binding-protein	gnl\|CDD\|378407	pfam10135, Rod-binding, Rod binding protein. Members of this family are involved in the assembly of the prokaryotic flagellar rod.	1.6778e-13
NZ_CP019600.1\|WP_047104919.1\|2677269_2679420_-\|type-I-DNA-topoisomerase	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
NZ_CP019600.1\|WP_047101138.1\|2679462_2680737_-\|DNA-protecting-protein-DprA	gnl\|CDD\|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	9.7075e-93
NZ_CP019600.1\|WP_173425795.1\|2689899_2690262_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.91774e-12
NZ_CP019600.1\|WP_012672084.1\|2693236_2693842_+\|metal-sensing-transcriptional-repressor	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.65852e-19
NZ_CP019600.1\|WP_047103158.1\|2676376_2677324_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	5.01914e-58
NZ_CP019600.1\|WP_012672083.1\|2691360_2693049_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	2.43501e-128
NZ_CP019600.1\|WP_047103155.1\|2689344_2689890_+\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	6.18932e-78
NZ_CP019600.1\|WP_101638614.1\|2685117_2686236_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	4.99812e-32
NZ_CP019600.1\|WP_047101143.1\|2688092_2689334_+\|hypothetical-protein	gnl\|CDD\|380172	NF033164, lipo_LipL46, lipoprotein LipL46. Members of this family are lipoprotein LipL46, as described in Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 but found broadly in the genus Leptospira. Close homologs that are not lipoproteins by sequence are likely defective in their reported coding region.	3.79451e-12
NZ_CP019600.1\|WP_012672072.1\|2680733_2681447_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.89607e-09
NZ_CP019600.1\|WP_047103159.1\|2675727_2676204_+\|GrpB-family-protein	gnl\|CDD\|377252	pfam04229, GrpB, GrpB protein. This family has been suggested to belong to the nucleotidyltransferase superfamily. It occurs at the C-terminus of dephospho-CoA kinase (CoaE) in a number of cases, where it plays a role in the proper folding of the enzyme.	7.12408e-58

>NZ_CP019600.1|WP_012672072.1|2680733_2681447_-|tetratricopeptide-repeat-protein
MKVILKYFTLIICFLSIISCDKQVIFNRFNLNRAYNLYEKGKNADDDKALLEITSTYNDIINQKIYAQDRLASVYRTLGERSLVKQQYGYSAKYFTEALKILPNSPYLRYGLGLSYANLAESADTQEKKSNFIQRAESNITFAISKDPNNANYYAALASLQGIQKENYEEAFENIKKAVEMSPDNADYLMLLARIQYSRGNYNEAVASYRKILNLPVENNVKETVLKNIEQIIGQRN
>NZ_CP019600.1|WP_047101138.1|2679462_2680737_-|DNA-protecting-protein-DprA
MSRTYDIKTYLIALNQIDKVGDKRISELINHYESVENIFDDKEENIKELLEKKFKSQIGNFDKNEILDKANTIVEKSNNYGIGILSLFDEDYPFNLKQIDNPPYILYYKGDLKKLRRNAIAIVGTREPTNESRKYSFELASKLSSLNISVVSGMAKGVDREAHLGAISSHINTVAVLGNGIDNVYPSENLQIYNKLSEKGLIVSEFEIGRKPDRMNFPRRNRIISGLSYAVVMVEAASKSGALITVDYALNQGRDVYIAPYDEKKSCYFGNHKLYKDGAKIAYNYMDILEDFDSIFSNDDDYVKMKLKYFEGGDIKSKAVKNDSIKSENNNSKEKKEIKKEEVKDKKEKKKNKISKQNDESIISALQEDEALLYNIIKQNDKIHIDEVIEESKMKVQAVTSMLMQLEIKGIIKQLSGKYYTIEK
>NZ_CP019600.1|WP_047104919.1|2677269_2679420_-|type-I-DNA-topoisomerase
MATTTEEKVKKTASKKTKDKKESKKKKLVIVESPAKAKTINRYLGSDYLVMSSMGHLIDLPRSRLAIDVDHGFEPEYITIRGRAKILNELKKEAKKAEEVLLAADDDREGESIAWHIGNKIRGVNSAVPIKRIVFHEITKDALKEAIDQPRDIDISKVNAQKARRVLDRLIGYNLSPLLWDKIKRGLSAGRVQNVALLIICNREDEIETFVPVEYWTFGVFLKHKNKEFLAELQKYKGEKPDLKTKQDVEDIMEHLKDKTYTVASIEVKDRLRNPTAPYTTSKLQQAASSALGYSASKTMQVAQSLYEGVDIAGEATGLITYMRTDSVRISPVAQEQAKEFIEKEYGSNYLPPEPPTYSVKKNAQDAHEAIRPTNVFLTPDSIKEYLKTDQYKLYKLIWERFVSSQMLPAKMKNTRAIIVAGDCEFSLSSSKIEFDGFMKVLTIDKEDKEKASKMPNLSKDDVCEFVENNPQQHFTTPPPRYTDASLVKILEESGIGRPSTYAPTIKTIISRHYVQRKGKQLVPTELGKLVNELISENFPELVNINFTADMESKLDKIEDDNIEWNNILKEFYPHFLDTLKTATENINNMKDFFNEETDFVCEKCGKKMIKRLGRYGYFIACSGFPECKNTKGISFGVCPKCGGDITLKRSKRGREFYGCSNYPKCDFVSWDKPLQEPCPKCGGLMVEKNIKNKGLFKVCIKEDCGYSEEIKEDEE
>NZ_CP019600.1|WP_047103158.1|2676376_2677324_-|N-acetylmuramoyl-L-alanine-amidase
MYQGRLRLFGGNQRGRRITLILIIVLTLLNTCYLLYPQNNDKIKLNNLNIKVEDLKEAFNPAVSKFSEKTISTIIIDPGHGGKDPGAVGVNKLFEKDIVLAFSLELKEELEEILPDVKIVLTRTGDTYPTLEKRFEIANDAAKINTDKAKNALFVSVHANASFSPSARGFEAYFVSAQESSEYARAVSMFENEALVKFDNIDTSKYEKDSSQITHNSMLIEQYQKESKLLAESITEEVLKVSGVARRTKPVQNALFYVLKGAVMPSTLIELGFITNPDDAKFMNTKETRLKMVKATAEGIKKYIEVFEKTKGFTK
>NZ_CP019600.1|WP_047103159.1|2675727_2676204_+|GrpB-family-protein
MRIIEIVDYDPNWKNLYKEEEVKIKNILNDILISIHHIGSTSIENLKAKPIIDILAVVDDINKVDHYNNDFANIGYKAMGENGIAKRRFFMKDYIDNNGTQKRFSHIHIFDINNKFDIERHLAFRDFLRANKNIAEEYVKIKLEALKNCNNDIELYCN
>NZ_CP019600.1|WP_047109366.1|2672289_2675052_+|DNA-polymerase-I
MKKTFLIIDAFGILYRYHFIFLKRPLLNSKGQNVSSINGFMRTYFSLINTYPAEYVAIALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDIVGTIAERNKKENIKTIIYSPDKDILQLVDDDVKVVASNKDNELMEYDAQAVKEKRGVYPNQIIDLLSLMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKGKIQEKLLESKDMAYMSYKLATIERNIEGFNLDYNEIASSKINIDEVNKILDELELKQIRDKINSYIYGSSKKEDKVKISNDKINKDNDSKTEEAPILSAKDNKSSYYLIENETELENLLKDINSKKLVCIDFETTGLDTFKDTIIGISFAIKSNEAFYLDLSGRTKIDKDKCMNLVFDTLEKEDIKVIGHNLKYEYKMMRAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEAGEEFNLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKPFCEEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEKEADKAMTIMKEIMEHSVKANVPITVDIHKGNSWGEVH
>NZ_CP019600.1|WP_012672066.1|2670893_2672234_+|TonB-dependent-receptor
MTALLMILLYIFLSFPIYAEDEIPFDYEAIQEETNEIQASHKEKQFLLDRSIYIRKSQIKSSKSRNMAELIKEYSNIDIKNKTVYSQSTFILNGKVLNNDEKKVYLFLYDKNNIDSININYYASRGRIVYDILSKKYSKSEELLYTKLSRDIKLEADQTIKYVKTQTNESKSSGKMNLLEYNLKNQNNSSLNFNLDTSGEERGFSSRKSKTADFRSYVNGNVNFKLNPVKQVSLTGKYFVNMQTDIAMLNKGYTNNIKNQNLYQGGNIGISLKPHDIVTLEALYFISSKKDLITNNNQYLTTQGSKTSIIFNIPIKDISSTIRIKGNYSYLVGKNLYNVSVNNNDLPGLPKHQFNTSLEYIYSRNSDFESSILLNVQYIGNQYNNTTKTDLDKAYTTFDIISSFVFKKYTSLKFGVKNILDVKYETIKGYPISSREYFVNVTSKFK
>NZ_CP019600.1|WP_047109365.1|2670343_2670793_+|DUF2752-domain-containing-protein
MIKILKLLLISFAAFFIIYDGNKHFDKYYIPIDRLCMIRNVTGFPCPGCGMTRAHIEVLKLNFKRAFYYHPLFIFPSIIFFIIIFKKKFKIANYIYNNNYIIMAMLLIFIVVYIVRFVLLFPNEEPFTYNYDSEFYKTFKIIKDILKQL
>NZ_CP019600.1|WP_012672064.1|2669923_2670307_+|rod-binding-protein
MNITDKYNLSMGSANLTKLENAKKQYGNAKFSIDETTTENVNKAISKYDKDFEKKRLRQVSEDFEALMINQMLKEMRKTVNKTGLIDGGMAEQIFEDMLYDEYAKEFSKTKTFGLADIIYNQMEKYV
>NZ_CP019600.1|WP_101638612.1|2666916_2669811_+|chemotaxis-protein
MSLKNKVLLLVIIVVILALSPTIFINTRTNREALYNSAMNISQNYFYDVSSTFDNIFTSTTVGTVSLSDIATVSYDLYSTGSVTDVATNLRKIIYRFHKSQLGLHHVIANGIYFEPDIIENNPYMRGLYSLYLYDIGNTGNMQPKIESASDNYNQEEFYYLALPENWNREAKRPRTVYYSSPYLKNIDKPQKVISFSSPIYSSINDNLIGVSLSDVSLEIVHEMFTNIVKTGPFNTVIFDSRNKKIVYHDNPNYILSDLKDIEWINNAIDNTTFYTNTRIRENYRVGDNTYTLFFKQFDNGFYNIFMYVPTSFFYNVLVTTNNTIFIILIFAIIVIIVVLNITIPILLKPLDKISQELESGVFDNNIFVNVSKINSKDSLGDLSTWIRIFFDMVQHVFSSVSKTLKVSKEQSNALKVKMVDISEAAGSMTESVSMIIDNISSQQTEFKHVETSNLEIYKIIASSLAELISIDDMTNNLQSKIDDQSVSINQINSLTMTMQKDMQEVSLSVGKAKEESEHVVSLAEDSKEKIVKTENITKSLITSIRGITDFVNSTIDISQQTNMLAMNAAIEAAHAGEQGKGFAVVAEEIRKLATTTNLQSEKAWKILRDIEKEMNQIMSSMTERIITTEDMLVKLQNFVNTMTKVKKVADEKYDSTKEISVSIESLYNAVKEIKEQYTNLHGRISVAKDDLVNLSDFSKKNDEAMKLVSENSDDIVSKTQDMGNQIGNVFGLIKEIEQLSNVASDSVDMLEKEMSNYVIKDFEDVIKEKIKIINEGDRAYSRHAFVQSIYKFVVATFGKEKFQALLDQMPEECKKIFRDVKKTKFRKKYPLSTSCFIPMTSIMDEFYDGAREGIREKARYDFKKFHFTTKLFIKVAKKNALADVFVNFTKKMFKNIHVEVVKAEKKRIIYHLHYFPNYDSMIETYYDEMIKNIFRFKYPNGSKVKMTKSISKGYIYTEYIVTW
>NZ_CP019600.1|WP_101638614.1|2685117_2686236_+|AI-2E-family-transporter
MNKNNIGYIFFIAFIFLSIFIMYKLLRPFGMIIFFAVVFYVILNPLFIKAMGKSYKKTDKLSIIKKNTLALLFSLISLIIFLVPTSILAYTIIVQLIDISNIGIKYFMNLDVNEVINNSNINNFLKSLPIDVSMETILKRIQDSSLSNLTFISSYLTQNVAGLLKSTGGFVSSFIFMMFSLFFFFVDGEYLIGQVRTLVPIDAKYLDRLIKQVSEGIKGIVFGNLFTGIFQGFCAFIVYTVFGVTNSFTFAFLTIIASFMPIIGTTIIWIPLGILFLINGEIIRAIIFIVCSWFFITIPDNFVRPLLLGNRIELHPLFIFFAILGGVLFFGLSGIILGPLSFILFFEIMKIYNEERLLEAKKERIAKKRRLS
>NZ_CP019600.1|WP_101638615.1|2686265_2687255_+|glycosyltransferase-family-9-protein
MTKILIIGMNYIGDTIFITPLIRAVKKHYNDSTIDVVNGARGIDILKENPYINNIIVRDDKVSEYIKNQNYDIGITATTAFYGASLLYKAKIPIRAGVNSECRGFLLNKKTSWKKHKRHIVDTILSILKPMNIETDGINTEIFLSEEENNFGIDKMKNYKNALLVHGGATRISKRYGIDNFSKLIDMFYKEKQVPIILIGSKDDLDFSEEMKKRLGNIIADDFTNKLSIRELISVIKHSYALIGGDSAPLHIANASNIYSIGIFGDTLPLIYGARGDKAINIEARKKYCTALKSFHCEYMKRGCKTIDCLKKLDPEEIMPSLLSVYKEI
>NZ_CP019600.1|WP_012672076.1|2687314_2687965_+|type-A-chloramphenicol-O-acetyltransferase
MFNKIDLNNYNRKEHYEMYMNNIPCTYSITVPLNITKFKKTVKDKNIKFYASVIYLISKVVNKYKEFKMALNDNKELGYYDIINPSYTIFHNDTKTFSSIYTEYNEKFDLFYKNYISDIETYGENKTFLAKPCSINNIFNISSLPLSAFTSFNLNLPNSFEYLAPIFTIGKYYTDDKNNIMMPLCLQIHHSVCDGYHVGIFFEDLQMEFNEFNLLY
>NZ_CP019600.1|WP_047101143.1|2688092_2689334_+|hypothetical-protein
MKFILNKLYLFIFLSLFFISCATTSKSTSSGGVYVGEDTGEIGIVNNWKNPDFKGGKTTKIIAEGYASADGRGEADAIERSIESAKRNAVEQAVGSIVNGSTLVENNRLISSKIYDNTTGYISAYKVINISKSGSVWYSKIEATVGVDMLQDNLQAMGILMDRKNLPLIVVLVTDETGNLSESFNVELEKNMSEKGFKFVSPSSLQNVMRKENISYEDTRGSRSSASIKKIADATGAQIAIIGKADAAFFTTIQGTAMKSYRSDVAITAINISDYTTIARATHQAGGVGGSDKDAHSIALVKSADYVSDDFVNQIVNKWQSEVQNGTEYTIYVSGLDFNESIGFEEALKKNIGGLKNIYNRGVSGESSRYVVTYVGSSRDLAVDINSKAKSMGYQVIISSFDDKTITLKASKR
>NZ_CP019600.1|WP_047103155.1|2689344_2689890_+|epoxyqueuosine-reductase-QueH
MEIKEKLVVHTCCAVCMSYPRTILEDYDTVFYFYNPNIYPIEEYKRRRDEFINYTNNLGIKTYISEEDDDVAKWYNDIKGFENEPEKGARCSICFKHRMKKAFEYAKSINAKYVATVMTVSPHKNSKVIEMIGKSLAENYEGIEYLHFDFKKKDGFKKTNIIANEAGLYRQNYCGCEFSIR
>NZ_CP019600.1|WP_173425795.1|2689899_2690262_-|helix-turn-helix-transcriptional-regulator
MMDTEVVLKNLGQNIRELRKNKKMTIDELAEKSSLSGKYLQGVEVGNRNISIKNLNKICKALETSPDTLLNMKPYNLKSSEEKIFAISEKLKKFEENKLDFIGNMIDHLNNIIKNEEKNE
>NZ_CP019600.1|WP_008724208.1|2690465_2690654_-|YjfB-family-protein
MDLSAYSSYSTGMLKQDISLSMIRKTSDMQAQAVDKIMTSIQPQAVSAPMRPGVGERLSTYA
>NZ_CP019600.1|WP_020064135.1|2690902_2691106_-|hypothetical-protein
MGVSLNSIYSSDMFPLTRHMTSAGLNVYNSSAYGSAQSADKVASIVTPQGSSAPINNNIGKTLDVYA
>NZ_CP019600.1|WP_012672083.1|2691360_2693049_+|FAD-dependent-oxidoreductase
MKKILIVGGVAGGASAAARLRRLNEEDKIIMFEKGPHVSFSNCSLPYHIGGLIPNEETLLLMNPEKFLKQFNVDARVNSEVVAIDRKNKEVTVVSEGREYKESYDKLILSMGAKPIVPPIKGIEKVNVFTVRNVVDISKIHNFLKGKSNAKVSVIGGGFIGIEMAENLKKVGYDVTIVEALPQIMKPFDYDMVQILHREIMDNGVNLIVNDKVDSFDTNTVILGSGKKIEADAVILAIGVSPETDIAAKAGIELGKTKGIKVDSTYRTNDKDIYAVGDAIEVYSPLFNDYYRLPLAGPAQKQARAVADHINGRTVDNRGFISSSVIKVFGYNGASTGLSEGFIKAMNLNIDYDTVEIIPFDGVSIMPTARLMHFKLIYEVPTGKVLGAQAIGKGNVDKRIDVIATIIKFGGTIDDLKDLELCYAPSFGTAKDVVNFAGYVASNLRNGDYKQVHYSQVRELVEKDAYFLDVRMPEDFAVGHLEKAVNIPLGALRSRYNEIPKDRTVYITCKTGLTSYTACKILQNIGFNNVVNVSGGFIGLSQYEYFNDKTTGRKPILTGYFG
>NZ_CP019600.1|WP_012672084.1|2693236_2693842_+|metal-sensing-transcriptional-repressor
MLIENDLKILSPSEAGEIISNTDNIVILDVRTEMEHNYEGMIEDSISMDFLKPRVFKREISKLDKETPYLLYCSIGKLSIKAAEYMKEEGFKNLYILEGGLKAWNKHFGDNNKVSKFDREEAVERRKRLIIRLNRIEGQIKGMKKMLAKGEYCGDILNQSLAVKAAMGSVNQEIMEVFLNTCMISPKEKEDFFRYMRKLIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1067753-1067776	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	MN694092	Marine virus AFVG_250M12, complete genome	35642-35665	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NC_048682	Raoultella phage Ro1, complete genome	49049-49072	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	MT178275	Klebsiella virus KpS8, complete genome	92948-92971	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NC_048647	UNVERIFIED: Klebsiella phage KNP2 genomic sequence	84347-84370	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	MT939253	Klebsiella phage vB_KpnM_Seu621, complete genome	92912-92935	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	MK024806	Proteus phage Mydo, complete genome	60151-60174	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	KX452695	UNVERIFIED: Klebsiella phage KPN2 genomic sequence	84347-84370	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	79216-79239	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NC_028659	Klebsiella phage vB_KpnM_KB57, complete genome	93185-93208	2	0.917
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1611166-1611189	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1026531-1026554	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	916119-916142	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	916161-916184	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	941759-941782	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP016009	Escherichia coli strain NGF1 plasmid pNGF1_pCol_let_like, complete sequence	4268-4291	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1100776-1100799	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	777128-777151	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1019755-1019778	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	7507-7530	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1108527-1108550	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NC_002487	Escherichia coli plasmid pCol-let, complete sequence	2202-2225	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	823381-823404	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1032164-1032187	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	934214-934237	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	915216-915239	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	915258-915281	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	920694-920717	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	920730-920753	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	920684-920707	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	920720-920743	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1028865-1028888	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1140230-1140253	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	916111-916134	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	916153-916176	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	916129-916152	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	916183-916206	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	916102-916125	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	916144-916167	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	960522-960545	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1108516-1108539	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1140197-1140220	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1139020-1139043	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	992306-992329	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1139033-1139056	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	992329-992352	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1139033-1139056	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	935475-935498	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1139022-1139045	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	992329-992352	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1031318-1031341	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1011992-1012015	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1059939-1059962	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1106095-1106118	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1139022-1139045	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	992329-992352	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1140196-1140219	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	992329-992352	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	992329-992352	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1139033-1139056	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1139044-1139067	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1139022-1139045	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	NZ_CP019193	Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717 plasmid pATCC10717, complete sequence	95075-95098	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	MN694424	Marine virus AFVG_250M468, complete genome	20247-20270	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	MN693528	Marine virus AFVG_25M160, complete genome	6188-6211	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	MN693259	Marine virus AFVG_25M161, complete genome	6178-6201	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	MN693217	Marine virus AFVG_25M350, complete genome	27839-27862	3	0.875
NZ_CP019600_3	3.4\|1173954\|24\|NZ_CP019600\|CRISPRCasFinder	1173954-1173977	24	MN694307	Marine virus AFVG_250M453, complete genome	33729-33752	3	0.875
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP011351	Bacillus thuringiensis strain YC-10 plasmid pYC3, complete sequence	72740-72767	4	0.857
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP004874	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB74, complete sequence	60338-60365	4	0.857
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP015154	Bacillus thuringiensis strain Bc601 plasmid pBTBC4, complete sequence	12672-12699	4	0.857
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP013059	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-4, complete sequence	16082-16109	4	0.857
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_MG710485	Bacillus thuringiensis serovar israelensis strain Bti-UFT6.51 plasmid pBtiUFT6.51.1 complete sequence	60248-60275	4	0.857
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	206494-206521	5	0.821
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP045536	Bacillaceae bacterium C02 plasmid unnamed3, complete sequence	4151-4178	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	CP045772	Bacillus paranthracis strain CFSAN068816 plasmid p5CFSAN068816, complete sequence	1741-1768	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_018494	Bacillus cereus FRI-35 plasmid p04, complete sequence	264-291	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP033791	Bacillus sp. FDAARGOS_527 plasmid unnamed4, complete sequence	5134-5161	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	AP013754	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C20-MedDCM-OCT-S24-C67, * SEQUENCING IN PROGRESS *	9386-9413	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_019005	Borrelia burgdorferi 297 plasmid 297_cp32-6, complete sequence	14729-14756	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP016363	Bacillus cereus strain M13 plasmid pBCM1303, complete sequence	2736-2763	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_018979	Borrelia burgdorferi 297 plasmid 297_cp32-12, complete sequence	14678-14705	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_018980	Borrelia burgdorferi 297 plasmid 297_cp32-7, complete sequence	6213-6240	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_018981	Borrelia burgdorferi 297 plasmid 297_cp32-5, complete sequence	14671-14698	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_018984	Borrelia burgdorferi 297 plasmid 297_cp32-4, complete sequence	14437-14464	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_019003	Borrelia burgdorferi 297 plasmid 297_cp32-1, complete sequence	14671-14698	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_019004	Borrelia burgdorferi 297 plasmid 297_cp32-11, complete sequence	14679-14706	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_019006	Borrelia burgdorferi 297 plasmid 297_cp32-3, complete sequence	14689-14716	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_017427	Borreliella burgdorferi JD1 plasmid JD1 cp32-3, complete sequence	14700-14727	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_017393	Borreliella burgdorferi JD1 plasmid JD1 cp32-11, complete sequence	14733-14760	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_017394	Borreliella burgdorferi JD1 plasmid JD1 cp32-1+5, complete sequence	14120-14147	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_017396	Borreliella burgdorferi JD1 plasmid JD1 cp32-12, complete sequence	14726-14753	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_017397	Borreliella burgdorferi JD1 plasmid JD1 cp32-9, complete sequence	14700-14727	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_017425	Borreliella burgdorferi JD1 plasmid JD1 cp32-6, complete sequence	14700-14727	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_017426	Borreliella burgdorferi JD1 plasmid JD1 cp32-8, complete sequence	14700-14727	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_016774	Bacillus cereus NC7401 plasmid pNC4, complete sequence	626-653	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_011776	Bacillus cereus AH820 plasmid pAH820_3, complete sequence	1052-1079	6	0.786
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NC_011657	Bacillus cereus AH187 plasmid pAH187_3, complete sequence	1052-1079	6	0.786
NZ_CP019600_3	3.2\|1173855\|33\|NZ_CP019600\|CRISPRCasFinder	1173855-1173887	33	AP014494	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C46-MedDCM-OCT-S46-C77, * SEQUENCING IN PROGRESS *, 4 ordered pieces	28383-28415	7	0.788
NZ_CP019600_4	4.1\|1376123\|31\|NZ_CP019600\|PILER-CR	1376123-1376153	31	CP002510	Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence	65362-65392	7	0.774
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	78775-78802	7	0.75
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	427199-427226	7	0.75
NZ_CP019600_4	4.1\|1376123\|31\|NZ_CP019600\|PILER-CR	1376123-1376153	31	MN694288	Marine virus AFVG_250M340, complete genome	24513-24543	8	0.742
NZ_CP019600_4	4.1\|1376123\|31\|NZ_CP019600\|PILER-CR	1376123-1376153	31	MN694316	Marine virus AFVG_250M341, complete genome	16491-16521	8	0.742
NZ_CP019600_4	4.1\|1376123\|31\|NZ_CP019600\|PILER-CR	1376123-1376153	31	MN694631	Marine virus AFVG_250M342, complete genome	16149-16179	8	0.742
NZ_CP019600_4	4.2\|1376195\|28\|NZ_CP019600\|PILER-CR	1376195-1376222	28	MN693323	Marine virus AFVG_25M87, complete genome	34159-34186	8	0.714

1. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggcagaggca	Protospacer
.********** ************

2. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to MN694092 (Marine virus AFVG_250M12, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagcagaggcagaggct	Protospacer
*********** ***********

3. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NC_048682 (Raoultella phage Ro1, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

4. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to MT178275 (Klebsiella virus KpS8, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

5. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NC_048647 (UNVERIFIED: Klebsiella phage KNP2 genomic sequence) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

6. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to MT939253 (Klebsiella phage vB_KpnM_Seu621, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

7. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to MK024806 (Proteus phage Mydo, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

8. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to KX452695 (UNVERIFIED: Klebsiella phage KPN2 genomic sequence) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

9. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

10. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NC_028659 (Klebsiella phage vB_KpnM_KB57, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

11. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

12. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

13. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

14. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

15. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

16. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP016009 (Escherichia coli strain NGF1 plasmid pNGF1_pCol_let_like, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgatgcaaaggcg	Protospacer
************** ***.****.

17. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

18. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

19. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

20. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

21. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

22. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NC_002487 (Escherichia coli plasmid pCol-let, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgatgcaaaggcg	Protospacer
************** ***.****.

23. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

24. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

25. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

26. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

27. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

28. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

29. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

30. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

31. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

32. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

33. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

34. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

35. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

36. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

37. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

38. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

39. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

40. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

41. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

42. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

43. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

44. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

45. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

46. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

47. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

48. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

49. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

50. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

51. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

52. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

53. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

54. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

55. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

56. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

57. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

58. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

59. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

60. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

61. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

62. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

63. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to NZ_CP019193 (Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717 plasmid pATCC10717, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcgaaagctgaggcagaagcc	Protospacer
*****.**************.**

64. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to MN694424 (Marine virus AFVG_250M468, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagctaaagcagaggcagaggcc	Protospacer
***** ***** ***********

65. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to MN693528 (Marine virus AFVG_25M160, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagaaaaagctgaggcagaagca	Protospacer
.*** ***************.***

66. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to MN693259 (Marine virus AFVG_25M161, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagaaaaagctgaggcagaagca	Protospacer
.*** ***************.***

67. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to MN693217 (Marine virus AFVG_25M350, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagaaaaagctgaggcagaagca	Protospacer
.*** ***************.***

68. spacer 3.4|1173954|24|NZ_CP019600|CRISPRCasFinder matches to MN694307 (Marine virus AFVG_250M453, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagctaaagcagaggcagaggcc	Protospacer
***** ***** ***********

69. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP011351 (Bacillus thuringiensis strain YC-10 plasmid pYC3, complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

70. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP004874 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB74, complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

71. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP015154 (Bacillus thuringiensis strain Bc601 plasmid pBTBC4, complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

72. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP013059 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-4, complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

73. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_MG710485 (Bacillus thuringiensis serovar israelensis strain Bti-UFT6.51 plasmid pBtiUFT6.51.1 complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

74. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 5, identity: 0.821

ttatcatctttagataaagtattagaaa	CRISPR spacer
atatcaactttagataaaatattattaa	Protospacer
 ***** ***********.*****  **

75. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP045536 (Bacillaceae bacterium C02 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

76. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to CP045772 (Bacillus paranthracis strain CFSAN068816 plasmid p5CFSAN068816, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

77. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_018494 (Bacillus cereus FRI-35 plasmid p04, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

78. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP033791 (Bacillus sp. FDAARGOS_527 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

79. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to AP013754 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C20-MedDCM-OCT-S24-C67, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
acaggatttttagataaattattagaaa	Protospacer
 .*  **.********** *********

80. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_019005 (Borrelia burgdorferi 297 plasmid 297_cp32-6, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

81. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP016363 (Bacillus cereus strain M13 plasmid pBCM1303, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

82. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_018979 (Borrelia burgdorferi 297 plasmid 297_cp32-12, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

83. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_018980 (Borrelia burgdorferi 297 plasmid 297_cp32-7, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

84. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_018981 (Borrelia burgdorferi 297 plasmid 297_cp32-5, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

85. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_018984 (Borrelia burgdorferi 297 plasmid 297_cp32-4, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

86. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_019003 (Borrelia burgdorferi 297 plasmid 297_cp32-1, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

87. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_019004 (Borrelia burgdorferi 297 plasmid 297_cp32-11, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

88. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_019006 (Borrelia burgdorferi 297 plasmid 297_cp32-3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

89. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_017427 (Borreliella burgdorferi JD1 plasmid JD1 cp32-3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

90. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_017393 (Borreliella burgdorferi JD1 plasmid JD1 cp32-11, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

91. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_017394 (Borreliella burgdorferi JD1 plasmid JD1 cp32-1+5, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

92. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_017396 (Borreliella burgdorferi JD1 plasmid JD1 cp32-12, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

93. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_017397 (Borreliella burgdorferi JD1 plasmid JD1 cp32-9, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

94. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_017425 (Borreliella burgdorferi JD1 plasmid JD1 cp32-6, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

95. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_017426 (Borreliella burgdorferi JD1 plasmid JD1 cp32-8, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

96. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_016774 (Bacillus cereus NC7401 plasmid pNC4, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

97. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_011776 (Bacillus cereus AH820 plasmid pAH820_3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

98. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NC_011657 (Bacillus cereus AH187 plasmid pAH187_3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

99. spacer 3.2|1173855|33|NZ_CP019600|CRISPRCasFinder matches to AP014494 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C46-MedDCM-OCT-S46-C77, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 7, identity: 0.788

gctgctgaaagagctgccgctgctgctaaagca	CRISPR spacer
actgctgtaagtgctgccgctgctgcttataaa	Protospacer
.****** *** *************** * . *

100. spacer 4.1|1376123|31|NZ_CP019600|PILER-CR matches to CP002510 (Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence) position: , mismatch: 7, identity: 0.774

-gatgtactagaagacggcggagaaacaattc	CRISPR spacer
ccata-accagaagacggcggagaaagaaatg	Protospacer
  **. **.***************** ** *

101. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 7, identity: 0.75

ttatcatctttagataaagtattagaaa	CRISPR spacer
aataaaactttagataaagtaatagaaa	Protospacer
     * ************** ******

102. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.75

ttatcatctttagataaagtattagaaa	CRISPR spacer
agctcttctatagataaagtattagatc	Protospacer
   ** *** ****************

103. spacer 4.1|1376123|31|NZ_CP019600|PILER-CR matches to MN694288 (Marine virus AFVG_250M340, complete genome) position: , mismatch: 8, identity: 0.742

gatgtactagaagacggcggagaaacaattc	CRISPR spacer
gatgtagtagaagaaggcggagaagccgcag	Protospacer
****** ******* *********.* ..

104. spacer 4.1|1376123|31|NZ_CP019600|PILER-CR matches to MN694316 (Marine virus AFVG_250M341, complete genome) position: , mismatch: 8, identity: 0.742

gatgtactagaagacggcggagaaacaattc	CRISPR spacer
gatgtagtagaagaaggcggagaagccgcag	Protospacer
****** ******* *********.* ..

105. spacer 4.1|1376123|31|NZ_CP019600|PILER-CR matches to MN694631 (Marine virus AFVG_250M342, complete genome) position: , mismatch: 8, identity: 0.742

gatgtactagaagacggcggagaaacaattc	CRISPR spacer
gatgtagtagaagaaggcggagaagccgcag	Protospacer
****** ******* *********.* ..

106. spacer 4.2|1376195|28|NZ_CP019600|PILER-CR matches to MN693323 (Marine virus AFVG_25M87, complete genome) position: , mismatch: 8, identity: 0.714

ttatcatctttagataaagtattagaaa	CRISPR spacer
cataaatctttagataatgtattagatt	Protospacer
.    ************ ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2111231 : 2119168

uncultured_virus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020064808.1\|2111231_2112497_+	insulinase family protein	G3MBJ8	Bacillus_virus	7.5e-35	30.8
WP_012671545.1\|2112624_2113980_+	signal recognition particle protein	D6PHS7	uncultured_phage	4.6e-06	31.7
WP_020064809.1\|2114002_2114362_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_008726607.1\|2114394_2114637_+	KH domain-containing protein	NA	NA	NA	NA
WP_028331356.1\|2114633_2115143_+	16S rRNA processing protein RimM	NA	NA	NA	NA
WP_047101338.1\|2115255_2115927_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.2e-12	34.1
WP_012671549.1\|2116041_2116527_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.7e-32	49.3
WP_012671550.1\|2116532_2116814_-	hypothetical protein	NA	NA	NA	NA
WP_047101337.1\|2116817_2118044_-	hypothetical protein	NA	NA	NA	NA
WP_012671552.1\|2118275_2118542_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	4.4e-06	36.1
WP_012671553.1\|2118655_2119168_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.6e-31	44.7

DBSCAN-SWA_2

2842762 : 2901856

Cafeteria_roenbergensis_virus(20.0%)

coat,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085168835.1\|2842762_2843668_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_085168837.1\|2843825_2845265_+	dihydropyrimidinase	NA	NA	NA	NA
WP_028331320.1\|2845352_2846339_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_020064356.1\|2846502_2847924_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_047111671.1\|2848064_2849549_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA
WP_012669634.1\|2849618_2850083_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_012669635.1\|2850250_2851744_+	glycogen synthase GlgA	NA	NA	NA	NA
WP_012669636.1\|2851780_2852305_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_012669637.1\|2852450_2853248_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_012669638.1\|2853272_2854058_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_012669639.1\|2854151_2855438_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_012669640.1\|2855620_2856049_+	PepSY-like domain-containing protein	NA	NA	NA	NA
WP_047111672.1\|2856111_2858487_-	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA
WP_047105017.1\|2858547_2859072_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_047105018.1\|2859062_2859626_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_047101731.1\|2860337_2861153_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	3.7e-51	46.0
WP_047101732.1\|2861641_2862322_+\|coat	spore coat protein	NA	NA	NA	NA
WP_012669646.1\|2862311_2862701_+	GIY-YIG nuclease family protein	G0T5A8	Wiseana_iridescent_virus	5.0e-06	36.0
WP_012669647.1\|2862758_2863556_+	transketolase	NA	NA	NA	NA
WP_012669648.1\|2863597_2864515_+	transketolase family protein	NA	NA	NA	NA
WP_012669649.1\|2864592_2864772_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_012669650.1\|2864791_2865007_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_012669651.1\|2865086_2865617_-	DUF308 domain-containing protein	NA	NA	NA	NA
WP_047101733.1\|2865757_2866660_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_012669653.1\|2866674_2867016_+	septation ring formation regulator EzrA	NA	NA	NA	NA
WP_012669654.1\|2867009_2867975_-	HPr(Ser) kinase/phosphatase	NA	NA	NA	NA
WP_012669655.1\|2867974_2868439_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_020064371.1\|2868476_2869253_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_012669657.1\|2869269_2870574_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_101638633.1\|2870566_2873857_-	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_020064373.1\|2873932_2874769_-	hypothetical protein	NA	NA	NA	NA
WP_012669660.1\|2874836_2875595_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012669661.1\|2875671_2876421_-	uracil-DNA glycosylase	A0A127AW33	Bacillus_phage	8.1e-21	36.2
WP_012669662.1\|2876736_2877600_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_047101740.1\|2877657_2879163_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012669664.1\|2879411_2880317_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_047113469.1\|2880421_2882281_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.6e-60	30.6
WP_020064377.1\|2882560_2883748_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_012669667.1\|2883924_2884701_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012669668.1\|2884788_2885631_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
WP_012669669.1\|2885934_2886309_+	group III truncated hemoglobin	NA	NA	NA	NA
WP_080513314.1\|2886360_2886696_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_186433807.1\|2886863_2887706_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_047109272.1\|2887876_2889025_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012669673.1\|2889265_2890153_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_020064381.1\|2890168_2891509_+	MATE family efflux transporter	NA	NA	NA	NA
WP_047111678.1\|2891649_2892561_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_012669677.1\|2893632_2894652_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	9.3e-20	31.4
WP_101638634.1\|2894806_2897230_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_012669679.1\|2897256_2897655_+	phosphoribosyltransferase	NA	NA	NA	NA
WP_047101748.1\|2897811_2899653_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_047111681.1\|2899671_2900790_-	radical SAM protein	NA	NA	NA	NA
WP_012669682.1\|2900986_2901856_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP019601

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7055

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101638658.1\|649_1753_+	glycosyl transferase	NA	NA	NA	NA
WP_101638653.1\|1785_2946_+	glycosyl transferase	NA	NA	NA	NA
WP_012672170.1\|6194_7055_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.8e-33	35.8

DBSCAN-SWA_2

16082 : 19536

Clostridioides_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012672161.1\|16082_16826_+	ParA family protein	A0A1V0DZZ0	Clostridioides_phage	1.9e-09	26.6
WP_020064989.1\|16827_17064_+	hypothetical protein	NA	NA	NA	NA
WP_020064990.1\|17073_17859_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_012672158.1\|19002_19536_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	1.2e-21	39.2

DBSCAN-SWA_3

25061 : 27069

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044555471.1\|25061_26054_+	radical SAM protein	A0A1B1IVD8	uncultured_Mediterranean_phage	2.8e-13	21.9
WP_012672151.1\|26064_27069_+	SPASM domain-containing protein	A0A1B1ITW6	uncultured_Mediterranean_phage	1.3e-10	22.5

DBSCAN-SWA_4

34938 : 35859

Tetraselmis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047100908.1\|34938_35859_+	DUF616 domain-containing protein	A0A2P0VMU2	Tetraselmis_virus	7.4e-32	36.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019600

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP019601

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection