CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP025541	Klebsiella sp. 2N3 chromosome, complete genome	3 crisprs	cas3,DinG,WYL,RT,DEDDh,csa3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	0	15	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025541_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025541_1

1456827-1456921

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025541_1

>merge|NZ_CP025541|1|1456827-1456921|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP025541|1|1|1456827-1456921|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025541.1\|WP_023286025.1\|1445945_1447448_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP025541.1\|WP_101816841.1\|1457062_1458688_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP025541.1\|WP_002888347.1\|1454654_1455194_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP025541.1\|WP_002888327.1\|1464174_1465164_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP025541.1\|WP_002888329.1\|1462882_1464169_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP025541.1\|WP_012737392.1\|1444225_1445935_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP025541.1\|WP_004177431.1\|1466366_1467215_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP025541.1\|WP_002888345.1\|1455373_1456738_-\|citrate/acetate-antiporter	unknown	unknown	gnl\|CDD\|377030
NZ_CP025541.1\|WP_023286024.1\|1448456_1450814_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP025541.1\|WP_002888324.1\|1465160_1465982_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
NZ_CP025541.1\|WP_002888353.1\|1447585_1448281_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP025541.1\|WP_002888323.1\|1465984_1466362_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP025541.1\|WP_004178574.1\|1451001_1453908_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP025541.1\|WP_032410076.1\|1455156_1455345_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025541.1\|WP_002888332.1\|1459408_1460236_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP025541.1\|WP_002888320.1\|1467466_1467946_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP025541.1\|WP_004145972.1\|1443042_1443888_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP025541.1\|WP_023328229.1\|1460479_1462828_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP025541.1\|WP_002888348.1\|1453920_1454580_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP025541.1\|WP_101816842.1\|1458677_1459376_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931

Protein	Function_ID	Function_description	E-value
NZ_CP025541.1\|WP_023286025.1\|1445945_1447448_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP025541.1\|WP_101816841.1\|1457062_1458688_+\|histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	7.52902e-173
NZ_CP025541.1\|WP_002888347.1\|1454654_1455194_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP025541.1\|WP_002888327.1\|1464174_1465164_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP025541.1\|WP_002888329.1\|1462882_1464169_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP025541.1\|WP_012737392.1\|1444225_1445935_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP025541.1\|WP_004177431.1\|1466366_1467215_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP025541.1\|WP_002888345.1\|1455373_1456738_-\|citrate/acetate-antiporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP025541.1\|WP_023286024.1\|1448456_1450814_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP025541.1\|WP_002888324.1\|1465160_1465982_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP025541.1\|WP_002888353.1\|1447585_1448281_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP025541.1\|WP_002888323.1\|1465984_1466362_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP025541.1\|WP_004178574.1\|1451001_1453908_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP025541.1\|WP_002888320.1\|1467466_1467946_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP025541.1\|WP_002888332.1\|1459408_1460236_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP025541.1\|WP_004145972.1\|1443042_1443888_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP025541.1\|WP_023328229.1\|1460479_1462828_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP025541.1\|WP_002888348.1\|1453920_1454580_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP025541.1\|WP_101816842.1\|1458677_1459376_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	3.61307e-66

>NZ_CP025541.1|WP_002888345.1|1455373_1456738_-|citrate/acetate-antiporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP025541.1|WP_032410076.1|1455156_1455345_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFRSGK
>NZ_CP025541.1|WP_002888347.1|1454654_1455194_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP025541.1|WP_002888348.1|1453920_1454580_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP025541.1|WP_004178574.1|1451001_1453908_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP025541.1|WP_023286024.1|1448456_1450814_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPLLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP025541.1|WP_002888353.1|1447585_1448281_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP025541.1|WP_023286025.1|1445945_1447448_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHNVVTGHWQDKEAHQRIGGWMRQAVSKQDTRYLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP025541.1|WP_012737392.1|1444225_1445935_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP025541.1|WP_004145972.1|1443042_1443888_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP025541.1|WP_101816841.1|1457062_1458688_+|histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDES
>NZ_CP025541.1|WP_101816842.1|1458677_1459376_+|response-regulator
MNHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP025541.1|WP_002888332.1|1459408_1460236_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP025541.1|WP_023328229.1|1460479_1462828_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGNLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP025541.1|WP_002888329.1|1462882_1464169_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP025541.1|WP_002888327.1|1464174_1465164_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP025541.1|WP_002888324.1|1465160_1465982_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP025541.1|WP_002888323.1|1465984_1466362_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP025541.1|WP_004177431.1|1466366_1467215_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP025541.1|WP_002888320.1|1467466_1467946_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Crispr_ID: NZ_CP025541_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025541_2

4575399-4575731

TypeI-E

I-E,II-B

Consensus_repeat	Method
GTCTTCCCCACATGCGTGGGGGTGTTTC	PILER-CR
GTCTTCCCCACATGCGTGGGGGTGTTT	CRISPRCasFinder
GTCTTCCCCACATGCGTGGGGGTGTTTC	CRT

5 spacers

cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2

The CRISPR arrays of NZ_CP025541_2

>merge|NZ_CP025541|2|4575399-4575731|PILER-CR,CRISPRCasFinder,CRT
GTCTTCCCCACATGCGTGGGGGTGTTTCCGATTTACCTCTTCCACCCGCTTGGCGGGAAAAGTCTTCCCCACATGCGTGGGGGTGTTTCTGGTCATCGCGCCCCTTGGCCTGCTCTGCGCTGGTCTTCCCCACATGCGTGGGGGTGTTTCTGCGCGATATCCGCGCCGCGTTAGCGATGTGGTGTCTTCCCCACATGCGTGGGGGTGTTTCTTGTCTGGGACAGCAAAGGACGCCGTAACGAGGGTCTTCCCCACATGCGTGGGGGTGTTTCTTCATCACGTGTGAGCGGATTTGGCTCTATCCTGTCTTCCCCACATGCGTGGAGGTGTTTT

>NZ_CP025541|2|1|4575399-4575731|PILER-CR
GTCTTCCCCACATGCGTGGGGGTGTTTC	CGATTTACCTCTTCCACCCGCTTGGCGGGAAAA
GTCTTCCCCACATGCGTGGGGGTGTTTC	TGGTCATCGCGCCCCTTGGCCTGCTCTGCGCTG
GTCTTCCCCACATGCGTGGGGGTGTTTC	TGCGCGATATCCGCGCCGCGTTAGCGATGTGGT
GTCTTCCCCACATGCGTGGGGGTGTTTC	TTGTCTGGGACAGCAAAGGACGCCGTAACGAGG
GTCTTCCCCACATGCGTGGGGGTGTTTC	TTCATCACGTGTGAGCGGATTTGGCTCTATCCT
GTCTTCCCCACATGCGTGGAGGTGTTTT

>NZ_CP025541|2|2|4575399-4575730|CRISPRCasFinder
GTCTTCCCCACATGCGTGGGGGTGTTT	CCGATTTACCTCTTCCACCCGCTTGGCGGGAAAA
GTCTTCCCCACATGCGTGGGGGTGTTT	CTGGTCATCGCGCCCCTTGGCCTGCTCTGCGCTG
GTCTTCCCCACATGCGTGGGGGTGTTT	CTGCGCGATATCCGCGCCGCGTTAGCGATGTGGT
GTCTTCCCCACATGCGTGGGGGTGTTT	CTTGTCTGGGACAGCAAAGGACGCCGTAACGAGG
GTCTTCCCCACATGCGTGGGGGTGTTT	CTTCATCACGTGTGAGCGGATTTGGCTCTATCCT
GTCTTCCCCACATGCGTGGAGGTGTTT

>NZ_CP025541|2|1|4575399-4575731|CRT
GTCTTCCCCACATGCGTGGGGGTGTTTC	CGATTTACCTCTTCCACCCGCTTGGCGGGAAAA
GTCTTCCCCACATGCGTGGGGGTGTTTC	TGGTCATCGCGCCCCTTGGCCTGCTCTGCGCTG
GTCTTCCCCACATGCGTGGGGGTGTTTC	TGCGCGATATCCGCGCCGCGTTAGCGATGTGGT
GTCTTCCCCACATGCGTGGGGGTGTTTC	TTGTCTGGGACAGCAAAGGACGCCGTAACGAGG
GTCTTCCCCACATGCGTGGGGGTGTTTC	TTCATCACGTGTGAGCGGATTTGGCTCTATCCT
GTCTTCCCCACATGCGTGGAGGTGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025541.1\|WP_004180297.1\|4580297_4580864_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP025541.1\|WP_023286561.1\|4562327_4563560_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|237958
NZ_CP025541.1\|WP_004180290.1\|4583296_4584172_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP025541.1\|WP_002908292.1\|4574075_4575146_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP025541.1\|WP_023286555.1\|4581533_4582568_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP025541.1\|WP_019705845.1\|4566171_4567329_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
NZ_CP025541.1\|WP_023286554.1\|4584149_4584437_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|187779
NZ_CP025541.1\|WP_023286552.1\|4586214_4587330_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025541.1\|WP_004148650.1\|4564676_4565876_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP025541.1\|WP_004217228.1\|4570895_4571132_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025541.1\|WP_023286560.1\|4564125_4564560_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP025541.1\|WP_023286559.1\|4571150_4572239_+\|iron(III)-transport-system-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224753
NZ_CP025541.1\|WP_004180292.1\|4582580_4583297_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP025541.1\|WP_004180298.1\|4578762_4580286_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP025541.1\|WP_023286556.1\|4580856_4581504_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|187858
NZ_CP025541.1\|WP_023286558.1\|4572313_4574083_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP025541.1\|WP_004148647.1\|4569768_4570848_-\|malate/lactate/ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|182240
NZ_CP025541.1\|WP_071787027.1\|4575909_4576089_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025541.1\|WP_023327921.1\|4576143_4578759_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP025541.1\|WP_004180308.1\|4567371_4569522_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|130652

Protein	Function_ID	Function_description	E-value
NZ_CP025541.1\|WP_004180297.1\|4580297_4580864_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.02768e-28
NZ_CP025541.1\|WP_023286561.1\|4562327_4563560_-\|MFS-transporter	gnl\|CDD\|237958	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM.	0
NZ_CP025541.1\|WP_004180290.1\|4583296_4584172_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.26809e-120
NZ_CP025541.1\|WP_019705845.1\|4566171_4567329_+\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP025541.1\|WP_023286556.1\|4580856_4581504_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	5.83788e-51
NZ_CP025541.1\|WP_004148650.1\|4564676_4565876_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.83425e-59
NZ_CP025541.1\|WP_004180298.1\|4578762_4580286_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	7.22065e-75
NZ_CP025541.1\|WP_023286560.1\|4564125_4564560_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.63611e-36
NZ_CP025541.1\|WP_023286559.1\|4571150_4572239_+\|iron(III)-transport-system-substrate-binding-protein	gnl\|CDD\|224753	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism].	4.25045e-48
NZ_CP025541.1\|WP_004180292.1\|4582580_4583297_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	5.1815e-54
NZ_CP025541.1\|WP_023286555.1\|4581533_4582568_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.04749e-110
NZ_CP025541.1\|WP_004180308.1\|4567371_4569522_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|130652	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type. This model describes a subset of formate dehydrogenase alpha chains found mainly archaea but also in alpha and gamma proteobacteria and a small number of gram positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized). This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.	0
NZ_CP025541.1\|WP_023286558.1\|4572313_4574083_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.48964e-102
NZ_CP025541.1\|WP_004148647.1\|4569768_4570848_-\|malate/lactate/ureidoglycolate-dehydrogenase	gnl\|CDD\|182240	PRK10098, PRK10098, putative dehydrogenase; Provisional.	0
NZ_CP025541.1\|WP_023286554.1\|4584149_4584437_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187779	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.46413e-29
NZ_CP025541.1\|WP_023327921.1\|4576143_4578759_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.56818e-73
NZ_CP025541.1\|WP_002908292.1\|4574075_4575146_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.21363e-144

>NZ_CP025541.1|WP_002908292.1|4574075_4575146_+|ABC-transporter-ATP-binding-protein
MIELSVENLHLTYGDNPVLKGVSMTLGRGEVVSLLGPSGSGKTTLLRAVAGLEKPTSGRIAIGNRTVYDGTPRSEIPAEERNLGLVFQSYALWPHKTVFDNVAYPLKLRKVAAGEIKERVQRVLDQLGLGHLGNRHPHQLSGGQQQRVAIGRALVYNPPVILLDEPLSNLDAKLREEARVFLRELIIKLGLSALMVTHDQNEAMAISDRILLLNNGVIEQQGTPQEMYGSPATLFAAEFMGSNNRLHGKVMALENGRARIEGASWSLWGRAGEGVSVGEPATAVIRVERLRLDGAAQDNSLQLPLLTSMYLGDRWEYLFRTEGDDFPLRAYGTALRDAEHCHLTLPAEDVWIFPQR
>NZ_CP025541.1|WP_023286558.1|4572313_4574083_+|iron-ABC-transporter-permease
MNVLRRKWQGLPRGVVVCITALVIYVPLLFIVVQSFLSAPFFSRSKSWSLEAFAFIFTDPDFYLALKSGFILAFGLVIIAIPLGGILAFLMVRTDLPGRRIIEPLILVPIFVSPMVLGFGYVVAAGPVGFFSQWAQQLIGFVPWNIYSMFSIVVIAGLTHVPHAYLYISSALRSVGSDVEEAARTVGATPLQVMTSVSLPMVRPSILYACVLLFFLGLEVFGLMLVLGDPEGNMVLATYLYKLTNKLGTPSYHLMAAVAVVLICITIPLVMLQRRLMRTANRFVTMKGKASQARALPLGKWRWVAGAVVVAWLTVTIGVPLLGVALRAFISNWGVGVSLWDELSLATFHNIWQQPNLLRAIVNSMAIGIIGGALAVICYLFVGIAMHRKADNVTRFLDYSVLVPRAVPGLLAGLAFLWVFLFVPMWLDQSLKHGWLSALPVADWLREHLIVQLRALRNTIFSVWLAYTVVWMAYGLRLISSTLLQVGPELEEAARSTGASRGQITRHVTVPLSRYGLIGSWLLMFLIFEREYSTGVYLLSPGTETIGSMLVSLWAAGAIDMVAALSFINILLVVIGLGIALRFGVKLHD
>NZ_CP025541.1|WP_023286559.1|4571150_4572239_+|iron(III)-transport-system-substrate-binding-protein
MYKKISGLVVSLTAVFACAAWAEVPAGYPADYQKTIDAAVKEGKVVVYSTTDTKAAGPLIKGFEAQYPGVKVEYNDMNSTELYNRYISEQAAGGGSGDVVWSSSMDTALKLATEYAEQYASPEVKQLPDWAVWQQKAYGTTYEPVVFIYNKRLIPQNEVPDSHTALAKLIASQADKFKGKVTTYDIEKSGLGFMLAVQDSQADANYFADLANIAKGGLTVQSSTGTMMERVSSGENLIGYNILGSYAEARAKNDPSLGIAYPKDYVLVLSRVSFISQESEHPNAAKLWLDYVLSEKGQQILASQADIPSIRRDIEGKNDIDGMTALLGKALKPIPVNETLLDYLQPQKRLQFIKQWRSAAAK
>NZ_CP025541.1|WP_004217228.1|4570895_4571132_+|hypothetical-protein
MLRRPAQKVKGGVSRRHAAAPAPAHTTDDKKPGRDRVLINAINTTFLNSASVTKARKKPSPSLQGELIPLYVKFVFIN
>NZ_CP025541.1|WP_004148647.1|4569768_4570848_-|malate/lactate/ureidoglycolate-dehydrogenase
MPTGHRFLATDLHQFVVSLFTHLGSTPGEATLVADHLIAANLAGHDSHGVGMIPSYVKSHAGGFLQLNRHATVTKDAGAVVTLDGNAGFGQVVAHEAMQLGIEKAKQHGMAAIALRNAHHVGRIGYWAEQCAAAGLISIHFVSVIGDPMVAPFRGKDSRFGTNPLCVVFPRAGHPPLLLDYATSAIAFGKTRVAWHKGEAVAPGCLIDAEGRPTTDPAVMQTSPLGALLTFAQHKGYALATLCEVLGGALSGGQTTHQESLQTSVDAIFNCMTTVILRPDAFDAPDSQAQTEAFIAWCKQSPHDADAPVLAPGEWEAANREARLAQGIPLDAGSWQAICAAARDVGLSESHFDRCRPLA
>NZ_CP025541.1|WP_004180308.1|4567371_4569522_-|formate-dehydrogenase-subunit-alpha
MKKITSVCPYCGAGCKLKLVVDNNKIIRAEAADGVTNQNQLCLKGYYGWDFLNDTQLLTPRLKQPMIRYQKGGAFTPVSWQEAIRYTASKLREIKEKHGPRAIMTTGSSRGTGNETNYVMQKFARAVLNTNNVDCCARVCHGPSVAGLQQALGNGAMSNSISDIENSKCLLVFGYNCADSHPIVARRVIKARDNGAKIIVCDPRRIETARIADRHLQLNNGSNMALVNAFGYVLLEEELYNKTYVERYTEGLDAYREAVKDYAPEAVEGIVGVSAREIREAMRMFAAAPSATIMWGMGVTQFGQAVDVVRGLASLALLTGNLGRPNVGVGPVRGQNNVQGACDMGVLPNLFPGYQEVTDPAVRAKFAAAWGIDPALMDDQVGTRITEVPHKALTGEIKAYYIMGEDPLQTEADLGLVRKGIEALDFVVVQDIFMTKTAEMADVLLPATSWGEHGGVFTCADRGFQRFEQAIPPAGNVKRDWEIISLLASELGYPMHYENNQQIWDEMRELCPLFYGVTWEKMGDMGHVQWPCPTLDHPGTPWLYKDNRFDTPSGKGQLFATAWRAPAERPDDEWPLVLCTVREVGHYSCRSMTGNCAALQSLADEPGRVQMNPADAQRLGIADKQLVWVSSRRGKVISRADLSDRINPGAVYMTYQWWVGACNELTQDNLDPISKTPETKYCAVKVEAIADQQWAERYAWTAYSDMKARLKAAADV
>NZ_CP025541.1|WP_019705845.1|4566171_4567329_+|amidohydrolase
MAVSPSLIAEAVGWRREFHAAPELGYQEQETSRRVAELLASFGLQVHRGLAGTGVVATLENGPGPVIGLRADMDALPITELGSVSYRSRRPGVMHACGHDGHTAMLLAAAAHLAQTRHFSGTVHFVFQPAEENLGGARKMVEEGLFERFPMDAIYALHNWPGIPLGEVALSDGAMMASLDAFEITLRGKSCHAAMPESGADPIVAAAQLIMALQTIPSRRLSPQDSAVVSITQINGGEAINVLPDTVVLRGTFRCLSNRVRARVRELIESYVATQPQVSDVQGEISWFPGYPVTKNHALQAQQVREVAVATLGAQAVRWNQAPSMASEDFACMLEACPGAYFWIGTDGETPSKPLHNASYDFNDALIGPGVAMWVGLVEKQLPAA
>NZ_CP025541.1|WP_004148650.1|4564676_4565876_-|MFS-transporter
MFNPDQNRLAPTLAMIMAASLVGFITGYTVPLISLELAQQQIAPLYVGLLAALPPAGMMISSFLSPALCRRVEMGVLLSGSLILLALATIASCMTTDMTLLLLPRLLTGLASGVIIVLGESWITGGAAGSQRATLTGLYASAFTGCQLAGPLLISVGPAWQTSALIAIVAVTAVCLLMLRHLPTGTRESLGERASWRSLGAFLPVLASGVFCFAFFDASILALLPLYGMDKGLNEGLAVLLVTVVLTGDAMFQTPLGWLADRVGIRRVHLSCAVVFSLSLLALPLMLGSRIQLMAICLLLGAAAGALYTLSLVRAGKTFNGQKLIMINALFGFFWSAGSVAGPVVSGMLIGITGYDGLIVTLVASGVLFLLIQCLCKNEKTLLASEQEDDMDEATESAR
>NZ_CP025541.1|WP_023286560.1|4564125_4564560_-|VOC-family-protein
MESNTLHRGRLIDHILLVVEDFEASKNFYTAVLSALEIPVITTANEYLLADELVVASRHSPEAAGKLTGRHHLAFQARDRDRVDAFYHAALTHGGRDNGAPGERHYHPGYYAAFVLDPQGNNIEAVYHGKAERSAGSVAISFTQ
>NZ_CP025541.1|WP_023286561.1|4562327_4563560_-|MFS-transporter
MKLALGPYIRFSRILLFPLAMVIYDFSAYLTTDLIQPGIIHIIREFEADVALAPASVSLYLAGGLALQWLLGPLSDRIGRRPVLLTGAIIFALACFSMIFVTSIDQYLIARFIQGTSICFISTVGYVSIQEAFDEKESIRIMAALTSIVLLAPVIGPLAGAGLMNFLHWKLLFAIIGAMSLLAWALLIFNMPETVTSQGRGFRPGEVFSEFVRAFKQPVVLTGALALSFSNLPIITWVALSPVILIDDGGMSRGAYAWTQVPVFGGVIIASIIVARFIKDPTSPRFIWRTIPIQLTGLLVLLAGNIAWPHTWWWSVSGTSIYALGTGLLFPVLFRFALFSHSLPKGTVSATINIVALSFMAASVEVARWVYFQAGGRIAFHCLALIAGIVVIMLVSRLLKLRQQHLLQPA
>NZ_CP025541.1|WP_071787027.1|4575909_4576089_+|hypothetical-protein
MNYVCPILSLGASKSFEFITRLEILFFILIIYSFLYYYFWLLSLIQCVVDVFDFIKSYL
>NZ_CP025541.1|WP_023327921.1|4576143_4578759_+|CRISPR-associated-helicase-Cas3'
MRRLIRVSLQNQHAIAAISFENCPAKTRMLSDGRVVQGRSVLSHCQIVGEIARALIALYPEPMRSRLFPAGSEMAAAGHDIGKVSPTFAAKIFAACDVNDHRLAGLSAVNPGLETLWGGHAGVSQATAESLHAPRYVPEILGQHHGFNLGLNGRRGDAEVFGGPLWFDERKKLVDKLKAEFSADWPTFDSAAQARVVAGLTSVADWIGSGEFFENPEQAWQPVITAALNNAGFIKPVIRQGLSFADVFFPDDPSKKPREAQSRFIDQVVGPGLYILEAQMGMGKTEAALYAAYQMLVQEKATGIYFALPTQLTSNKIYDRFNSFLHQIVSTETPQHALLLHSGAWLMDTEMGEEGSPGGAWFNHRKRGLLAPFAVGTIDQALMAVMNVKHGFVRAYGLAGKVVILDEVHTYDLYTGTILNALVEFLRQIDCTVIILSATLSQTRRDALLQQSTTSEAYPLITAAPSAERERGLVEIGVPVTENTTVILHSCRKDESAREEALRRAELGQQVLWIENTIAEAQQTYLDLASRAVEAGCETGLLHSRFTPQHRNRHEQRWVALYGRAGWPQRKQCGRILVGTQVLEQSLDIDADFLVSRFAPTDMLLQRLGRLWRHTDTPRHASAKAECWLLSPSLESALANPGSAFGMSAMVYSPYVLCRSLEVWQAIPSLSLPGDIRPLIDQTYTERAEEGTWATLLHELKNGSRFRSGEQALQSLAKLTLSTGGKTLPEHKAETRYSDRDTHDLLLLRGLRTQDGITYMRLLDGAELTLPHGRHRLSRAQWRQLAVVLNQQLVRVSPAFCPPTIAKSELEKLHLQEVFYLGRPEDDEALLRVAIVSPAGELKTLDGRPAGDKYTLEYSEYLGFRAISKKE
>NZ_CP025541.1|WP_004180298.1|4578762_4580286_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MENRFNLIDEPWIAVVDVGLVSLTDIFSQPELRALGGNPVEKIALTKLLLAIAQAAATPTDDSDWQQMGWQGMAHCCLQYLAKWHDRFYLYGEKPFLQMPAIQAAECKSLGVLSPEVSTGNTTVLTESQQQQQLTDADKALAIVMQMGFGLGGKKTDNSVVLTPGYRGKQNDKGKPGSGKAGVSVGHMGLLHSFWQGNSIVQSIWLNLFTAEDITQLAMYPTLGTAPWERMPTGEDDDIARSLKASLLGRLISMGKFCLLAEDGIHYSDGISHAGYLEGKTDPSVSVDFSGKKPKALWVNPGKRPWRELTSLLQFIEQDSPRGYETRQLSLPLKRITHHAEQFALWSGGLRVSSNAGEQYASGTDDYVQSEIWLSSDLINHTFLEYLKYEMTQLDAVQKQLWGAVVRYFRQLSDIDKSATGKAQPFVAKQAEKATTIFWQLCERQAQTLINACLNSGEDHTARLQLRKIFARYAGQVFDQLCPADSARQLDAWALARPNFSQYLTLD
>NZ_CP025541.1|WP_004180297.1|4580297_4580864_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MDQVPADVTAESAGNESPAKRFVGYVIERIAKDNGFAARLKRADNPATEYQSWEILAGFGIDLEKEWQRLPYCVIGAALAKAKPASNGTITLGAAIAGCYPEGNQSEQAKARLRRLLACTSTSEACRILRPLLALMASRSVTPDFAGLLNELQWFSGSSRERIRARWAQEFYRRAGEAAGSEARNSHD
>NZ_CP025541.1|WP_023286556.1|4580856_4581504_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTDLFASALHLDRAAVKALKISDAYSLHRVVYSLFADARTDREKCSHISSGIAYVDQGGDFHGRKILIVSDRPPAAKVDGLYGEVISKSIPAAFLSHSRYRFQVQVNPVRKDKQTGKRVAVKGRADIAQWFIQRAASRWGFDVDLPGLQVEAMEVLQFKDKAGRQVTLGKATVQGLLTVTDRQKFQHSFHHGIGKGRAFGCGLLQIVPVVDALFS
>NZ_CP025541.1|WP_023286555.1|4581533_4582568_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTPFRNTRIEFHILQSFPVTCLNRDDVGAPKSAIVGGVSRARVSSQCWKRQVRLALPDFGIRLGVRSKKTASLLANVCRALGASEEQATGCGEAMAAFFSDDTLLFLSEAEAAAFAAYAQGKDFDAASLKDKELVKVAKKVVNNTLDALDIALFGRMVAKAADMNVEAAASFAHAISTHKVSNEVEFFTAVDDCKTEDESGSAHMGSLEFNSATYYRYVSLDLGQLAQTLGEDADMKTAVAAFVKALYVAVPSARQTTQSGACPWEYARVLLRKGQGLQASFEQPVKSQGEGFLSPSKAALKNWLHTKEKLSGSLFGKQGDYEWGEDLDYSIDRLIADLQSHL
>NZ_CP025541.1|WP_004180292.1|4582580_4583297_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRQTTQYMLLWLEGPLQSWGGDSKFGVRDTLNFPTRSGILGLICCARGAAGPEVEWLAEMNNLPMEVRAYARTDKEGQPLLREPTLCDFQMVGSGYDDSDPWQSLLIPKTSDGKKAVGGGTKMTYRHYLQDAVFAVVMGLGSQQAESLPEALQNPVWDLYLGRKSCVPSELIYQGIYDSAEAAWQQARTLAESKRRTLSYRVIEGEGDGDVITLNDVPVQFGRHKRYRDRQVTVLECG
>NZ_CP025541.1|WP_004180290.1|4583296_4584172_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MAQGERLFVKVTRELLPQVKDKYPFLYLERGRLEIDDSSVKWVDADGNVVPLPVATINTLLLGPGTTVTHEAIKTATAANCAVCWVGEDSLLFYAAGFLPTADTRNLKAQMALACDASSALKVARAMFAKRFPDADLEGKSLNSMMGMEGSRVRALYQQKAQEYGVGWKGRQFTPGKFELSDLTNQVLTSTNAALYGILCSVVHAMGYSPHIGFIHSGSPLPFVYDLADLYKERLCIDLAFSLSREMAGRYDKHKVSEAFRKRVIALDLLNLIAADINELMGGKGARRTGK
>NZ_CP025541.1|WP_023286554.1|4584149_4584437_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVVLANDLPPAVRGRMKLWFVEPRPNFFVSGVKDSVAQTVVDYLLQYTPVESGLLLFRSIPQPPGYEIRYKGEVRKPIIDISGLQLIIETLKLS
>NZ_CP025541.1|WP_023286552.1|4586214_4587330_+|hypothetical-protein
MFRLYQSHDLIRQLNPEDFQYILTPAGSLREACIHYDLSCEANGHSLAFGLPKEIYNSSPHKRPYERRQRSYADPIYDEVEHRLQIGWLVGVDISRCWSSDRNPFYIDDNGDLIFTPTASSYHAWFKDEIMNAYRHTIADRQGRRPAPTQRIQHNYNGSRIAPASKTLNSKTIGRLLAAGGIYNGNLEGFHETALQLGGDAPAGYDQIMGNKGLLIAGASFAAGLTMGRLNPLSELDELSSLSKIPAFESPYVKGFISENGTLVNAEYAVIDPKKLATYALDSTHPTGGHKARVFESALGYNPTNADVLAARIQKGVLSAPATILQTNNYGQTMAVDMPILGINGETAVIRTGWMYETDALVPRLTTIYVK

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Crispr_ID: NZ_CP025541_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025541_3

4584485-4585976

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTCTTCCCCACGCACGTGGGGGTGTTTC	PILER-CR
GTCTTCCCCACGCACGTGGGGGTGTTTC	CRISPRCasFinder
GTCTTCCCCACGCACGTGGGGGTGTTTC	CRT

24 spacers

cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP025541_3

>merge|NZ_CP025541|3|4584485-4585976|PILER-CR,CRISPRCasFinder,CRT
GTCTTCCCCACGCACGTGGGGGTGTTTCTACGTCGAAAACGAGCGTAAAACAGGTTTCATCGTCTTCCCCACGCACGTGGGGGTGTTTCTAGATGGATTCCTGGGTATCCCCCCAAAACAAAGTCTTCCCCACGCACGTGGGGGTGTTTCCTTTCTCGACGGACGATCCCGTTTACCTCGTTGGTCTTCCCCACGCACGTGGGGGTGTTTCTGACGCTATTTTTTGCCAGGACAACGGCTATGAGTCTTCCCCACGCACGTGGGGGTGTTTCTTACGTGATCGATAGCGGGCTGTCATATAGCGAGTCTTCCCCACGCACGTGGGGGTGTTTCTCTTTATGTCCGCTTGCGAGGCGATCAGGGTCAGTCTTCCCCACGCACGTGGGGGTGTTTCCTCCTGGTTCTGGAGATTTCGACACTTTCAGGCGTCTTCCCCACGCACGTGGGGGTGTTTCTGTTGTTTATGTGCGCCCCTTTACGGCGGAAACGTCTTCCCCACGCACGTGGGGGTGTTTCTCGAGTTGCCAGCGCGCCACGCTGATCCGCAGGGTCTTCCCCACGCACGTGGGGGTGTTTCTCGTGGATCATTTTGACTCCTTAACTTCACGTAGTCTTCCCCACGCACGTGGGGGTGTTTCTGGCATCCGTGTAACGGGAAGCGGCCTTGCGGAGTCTTCCCCACGCACGTGGGGGTGTTTCCACCCTGCGTCGCTGGTACTGCCGCACGCAAAAGTCTTCCCCACGCACGTGGGGGGGTTTCCGGTACTATTTCGAAAGTTTCGACGCCGGATTTGTCTTCCCCACGCACGTGGGGGTGTTTCTAGCAGTGGGCTCCGTTGCTCTTCCCCGGTCGGGTCTTCCCCACGCACGTGGGGGTGTTTCTCGCGTTTTATATGGTTGTCGCTGTACCAGCGCGTCTTCCCCACGCACGTGGGGGTGTTTCTACCGTGAGGTCTCCAGAGCGGGCGAAATCCTCGTCTTCCCCACGCACGTGGGGGTGTTTCCCCTGCTGAGCCCACTCGCACACCAACACCGAAGTCTTCCCCACGCACGTGGGGGTGTTTCTGCAAACCAGTTTCCCGGAAATATGAATGACGGGTCTTCCCCACGCACGTGGGGGTGTTTCCAATAAACGGCATAAGCCGGAACGGATCGCGGTGTCTTCCCCACGCACGTGGGGGTGTTTCTCTCCTCGTCCGGTGTGTCTGCCAGTGTGTCATGTCTTCCCCACGCACGTGGGGGTGTTTCCAAAAAGCGATTTTTTCGCAGCAGGGTCTTGCAGTCTTCCCCACGCACGTGGGGGTGTTTCTCGCCAGCGGCTGCACAAGTCTGACCAAAATCCGTCTTCCCCACGCACGTGGGGGTGTTTCCAGCTCGCTGTTCGGGTTTGACTGACTGATCGCGTCTTCCCCACGCACGTGGGGGTGTTTCCAACAACACGGCATCCCGCGACCTGCTGAATTTGTCTTCCCCACGCACGTGGGGGTGTTTC

>NZ_CP025541|3|2|4584485-4585976|PILER-CR
GTCTTCCCCACGCACGTGGGGGTGTTTC	TACGTCGAAAACGAGCGTAAAACAGGTTTCATC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TAGATGGATTCCTGGGTATCCCCCCAAAACAAA
GTCTTCCCCACGCACGTGGGGGTGTTTC	CTTTCTCGACGGACGATCCCGTTTACCTCGTTG
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGACGCTATTTTTTGCCAGGACAACGGCTATGA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TTACGTGATCGATAGCGGGCTGTCATATAGCGA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCTTTATGTCCGCTTGCGAGGCGATCAGGGTCA
GTCTTCCCCACGCACGTGGGGGTGTTTC	CTCCTGGTTCTGGAGATTTCGACACTTTCAGGC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGTTGTTTATGTGCGCCCCTTTACGGCGGAAAC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGAGTTGCCAGCGCGCCACGCTGATCCGCAGG
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGTGGATCATTTTGACTCCTTAACTTCACGTA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGGCATCCGTGTAACGGGAAGCGGCCTTGCGGA
GTCTTCCCCACGCACGTGGGGGTGTTTC	CACCCTGCGTCGCTGGTACTGCCGCACGCAAAA
GTCTTCCCCACGCACGTGGGGGGGTTTC	CGGTACTATTTCGAAAGTTTCGACGCCGGATTT
GTCTTCCCCACGCACGTGGGGGTGTTTC	TAGCAGTGGGCTCCGTTGCTCTTCCCCGGTCGG
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGCGTTTTATATGGTTGTCGCTGTACCAGCGC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TACCGTGAGGTCTCCAGAGCGGGCGAAATCCTC
GTCTTCCCCACGCACGTGGGGGTGTTTC	CCCTGCTGAGCCCACTCGCACACCAACACCGAA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGCAAACCAGTTTCCCGGAAATATGAATGACGG
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAATAAACGGCATAAGCCGGAACGGATCGCGGT
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCTCCTCGTCCGGTGTGTCTGCCAGTGTGTCAT
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAAAAAGCGATTTTTTCGCAGCAGGGTCTTGCA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGCCAGCGGCTGCACAAGTCTGACCAAAATCC
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAGCTCGCTGTTCGGGTTTGACTGACTGATCGC
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAACAACACGGCATCCCGCGACCTGCTGAATTT
GTCTTCCCCACGCACGTGGGGGTGTTTC

>NZ_CP025541|3|3|4584485-4585976|CRISPRCasFinder
GTCTTCCCCACGCACGTGGGGGTGTTTC	TACGTCGAAAACGAGCGTAAAACAGGTTTCATC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TAGATGGATTCCTGGGTATCCCCCCAAAACAAA
GTCTTCCCCACGCACGTGGGGGTGTTTC	CTTTCTCGACGGACGATCCCGTTTACCTCGTTG
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGACGCTATTTTTTGCCAGGACAACGGCTATGA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TTACGTGATCGATAGCGGGCTGTCATATAGCGA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCTTTATGTCCGCTTGCGAGGCGATCAGGGTCA
GTCTTCCCCACGCACGTGGGGGTGTTTC	CTCCTGGTTCTGGAGATTTCGACACTTTCAGGC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGTTGTTTATGTGCGCCCCTTTACGGCGGAAAC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGAGTTGCCAGCGCGCCACGCTGATCCGCAGG
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGTGGATCATTTTGACTCCTTAACTTCACGTA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGGCATCCGTGTAACGGGAAGCGGCCTTGCGGA
GTCTTCCCCACGCACGTGGGGGTGTTTC	CACCCTGCGTCGCTGGTACTGCCGCACGCAAAA
GTCTTCCCCACGCACGTGGGGGGGTTTC	CGGTACTATTTCGAAAGTTTCGACGCCGGATTT
GTCTTCCCCACGCACGTGGGGGTGTTTC	TAGCAGTGGGCTCCGTTGCTCTTCCCCGGTCGG
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGCGTTTTATATGGTTGTCGCTGTACCAGCGC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TACCGTGAGGTCTCCAGAGCGGGCGAAATCCTC
GTCTTCCCCACGCACGTGGGGGTGTTTC	CCCTGCTGAGCCCACTCGCACACCAACACCGAA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGCAAACCAGTTTCCCGGAAATATGAATGACGG
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAATAAACGGCATAAGCCGGAACGGATCGCGGT
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCTCCTCGTCCGGTGTGTCTGCCAGTGTGTCAT
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAAAAAGCGATTTTTTCGCAGCAGGGTCTTGCA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGCCAGCGGCTGCACAAGTCTGACCAAAATCC
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAGCTCGCTGTTCGGGTTTGACTGACTGATCGC
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAACAACACGGCATCCCGCGACCTGCTGAATTT
GTCTTCCCCACGCACGTGGGGGTGTTTC

>NZ_CP025541|3|2|4584485-4585976|CRT
GTCTTCCCCACGCACGTGGGGGTGTTTC	TACGTCGAAAACGAGCGTAAAACAGGTTTCATC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TAGATGGATTCCTGGGTATCCCCCCAAAACAAA
GTCTTCCCCACGCACGTGGGGGTGTTTC	CTTTCTCGACGGACGATCCCGTTTACCTCGTTG
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGACGCTATTTTTTGCCAGGACAACGGCTATGA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TTACGTGATCGATAGCGGGCTGTCATATAGCGA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCTTTATGTCCGCTTGCGAGGCGATCAGGGTCA
GTCTTCCCCACGCACGTGGGGGTGTTTC	CTCCTGGTTCTGGAGATTTCGACACTTTCAGGC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGTTGTTTATGTGCGCCCCTTTACGGCGGAAAC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGAGTTGCCAGCGCGCCACGCTGATCCGCAGG
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGTGGATCATTTTGACTCCTTAACTTCACGTA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGGCATCCGTGTAACGGGAAGCGGCCTTGCGGA
GTCTTCCCCACGCACGTGGGGGTGTTTC	CACCCTGCGTCGCTGGTACTGCCGCACGCAAAA
GTCTTCCCCACGCACGTGGGGGGGTTTC	CGGTACTATTTCGAAAGTTTCGACGCCGGATTT
GTCTTCCCCACGCACGTGGGGGTGTTTC	TAGCAGTGGGCTCCGTTGCTCTTCCCCGGTCGG
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGCGTTTTATATGGTTGTCGCTGTACCAGCGC
GTCTTCCCCACGCACGTGGGGGTGTTTC	TACCGTGAGGTCTCCAGAGCGGGCGAAATCCTC
GTCTTCCCCACGCACGTGGGGGTGTTTC	CCCTGCTGAGCCCACTCGCACACCAACACCGAA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TGCAAACCAGTTTCCCGGAAATATGAATGACGG
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAATAAACGGCATAAGCCGGAACGGATCGCGGT
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCTCCTCGTCCGGTGTGTCTGCCAGTGTGTCAT
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAAAAAGCGATTTTTTCGCAGCAGGGTCTTGCA
GTCTTCCCCACGCACGTGGGGGTGTTTC	TCGCCAGCGGCTGCACAAGTCTGACCAAAATCC
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAGCTCGCTGTTCGGGTTTGACTGACTGATCGC
GTCTTCCCCACGCACGTGGGGGTGTTTC	CAACAACACGGCATCCCGCGACCTGCTGAATTT
GTCTTCCCCACGCACGTGGGGGTGTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025541.1\|WP_023286551.1\|4587340_4588024_+\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NZ_CP025541.1\|WP_004180297.1\|4580297_4580864_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP025541.1\|WP_017899585.1\|4593554_4594214_+\|heme-exporter-protein-CcmB	unknown	unknown	gnl\|CDD\|200083
NZ_CP025541.1\|WP_023286554.1\|4584149_4584437_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|187779
NZ_CP025541.1\|WP_004151164.1\|4591513_4592851_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|365823
NZ_CP025541.1\|WP_002908289.1\|4588084_4588456_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP025541.1\|WP_023286552.1\|4586214_4587330_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025541.1\|WP_002908285.1\|4589715_4591500_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP025541.1\|WP_023286555.1\|4581533_4582568_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP025541.1\|WP_004180298.1\|4578762_4580286_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP025541.1\|WP_023286549.1\|4594263_4595001_+\|heme-exporter-protein-C	unknown	unknown	gnl\|CDD\|273492
NZ_CP025541.1\|WP_004180292.1\|4582580_4583297_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP025541.1\|WP_023286548.1\|4594997_4595228_+\|heme-exporter-protein-CcmD	unknown	unknown	gnl\|CDD\|225656
NZ_CP025541.1\|WP_004180290.1\|4583296_4584172_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP025541.1\|WP_023286556.1\|4580856_4581504_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|187858
NZ_CP025541.1\|WP_023286550.1\|4592934_4593558_+\|cytochrome-c-biogenesis-heme-transporting-ATPase-CcmA	unknown	unknown	gnl\|CDD\|184125
NZ_CP025541.1\|WP_004194026.1\|4588960_4589713_+\|gluconate-2-dehydrogenase	unknown	unknown	gnl\|CDD\|379295
NZ_CP025541.1\|WP_071787027.1\|4575909_4576089_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025541.1\|WP_023327921.1\|4576143_4578759_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP025541.1\|WP_002908292.1\|4574075_4575146_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361

Protein	Function_ID	Function_description	E-value
NZ_CP025541.1\|WP_023286551.1\|4587340_4588024_+\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	3.15734e-18
NZ_CP025541.1\|WP_004180297.1\|4580297_4580864_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.02768e-28
NZ_CP025541.1\|WP_017899585.1\|4593554_4594214_+\|heme-exporter-protein-CcmB	gnl\|CDD\|200083	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	6.81015e-72
NZ_CP025541.1\|WP_023286550.1\|4592934_4593558_+\|cytochrome-c-biogenesis-heme-transporting-ATPase-CcmA	gnl\|CDD\|184125	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA.	2.10107e-104
NZ_CP025541.1\|WP_023286556.1\|4580856_4581504_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	5.83788e-51
NZ_CP025541.1\|WP_004151164.1\|4591513_4592851_+\|alcohol-dehydrogenase	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	1.88959e-12
NZ_CP025541.1\|WP_002908285.1\|4589715_4591500_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	4.91814e-80
NZ_CP025541.1\|WP_023286555.1\|4581533_4582568_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.04749e-110
NZ_CP025541.1\|WP_004180298.1\|4578762_4580286_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	7.22065e-75
NZ_CP025541.1\|WP_023286549.1\|4594263_4595001_+\|heme-exporter-protein-C	gnl\|CDD\|273492	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	1.09949e-85
NZ_CP025541.1\|WP_004180292.1\|4582580_4583297_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	5.1815e-54
NZ_CP025541.1\|WP_023286548.1\|4594997_4595228_+\|heme-exporter-protein-CcmD	gnl\|CDD\|225656	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion].	8.89916e-17
NZ_CP025541.1\|WP_004180290.1\|4583296_4584172_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.26809e-120
NZ_CP025541.1\|WP_002908289.1\|4588084_4588456_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.95464e-42
NZ_CP025541.1\|WP_004194026.1\|4588960_4589713_+\|gluconate-2-dehydrogenase	gnl\|CDD\|379295	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3. This family corresponds to subunit 3 of the Gluconate 2-dehydrogenase enzyme that catalyzes the conversion of gluconate to 2-dehydro-D-gluconate EC:1.1.99.3.	5.70236e-40
NZ_CP025541.1\|WP_023286554.1\|4584149_4584437_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187779	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.46413e-29
NZ_CP025541.1\|WP_023327921.1\|4576143_4578759_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.56818e-73
NZ_CP025541.1\|WP_002908292.1\|4574075_4575146_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.21363e-144

>NZ_CP025541.1|WP_023286554.1|4584149_4584437_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVVLANDLPPAVRGRMKLWFVEPRPNFFVSGVKDSVAQTVVDYLLQYTPVESGLLLFRSIPQPPGYEIRYKGEVRKPIIDISGLQLIIETLKLS
>NZ_CP025541.1|WP_004180290.1|4583296_4584172_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MAQGERLFVKVTRELLPQVKDKYPFLYLERGRLEIDDSSVKWVDADGNVVPLPVATINTLLLGPGTTVTHEAIKTATAANCAVCWVGEDSLLFYAAGFLPTADTRNLKAQMALACDASSALKVARAMFAKRFPDADLEGKSLNSMMGMEGSRVRALYQQKAQEYGVGWKGRQFTPGKFELSDLTNQVLTSTNAALYGILCSVVHAMGYSPHIGFIHSGSPLPFVYDLADLYKERLCIDLAFSLSREMAGRYDKHKVSEAFRKRVIALDLLNLIAADINELMGGKGARRTGK
>NZ_CP025541.1|WP_004180292.1|4582580_4583297_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRQTTQYMLLWLEGPLQSWGGDSKFGVRDTLNFPTRSGILGLICCARGAAGPEVEWLAEMNNLPMEVRAYARTDKEGQPLLREPTLCDFQMVGSGYDDSDPWQSLLIPKTSDGKKAVGGGTKMTYRHYLQDAVFAVVMGLGSQQAESLPEALQNPVWDLYLGRKSCVPSELIYQGIYDSAEAAWQQARTLAESKRRTLSYRVIEGEGDGDVITLNDVPVQFGRHKRYRDRQVTVLECG
>NZ_CP025541.1|WP_023286555.1|4581533_4582568_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTPFRNTRIEFHILQSFPVTCLNRDDVGAPKSAIVGGVSRARVSSQCWKRQVRLALPDFGIRLGVRSKKTASLLANVCRALGASEEQATGCGEAMAAFFSDDTLLFLSEAEAAAFAAYAQGKDFDAASLKDKELVKVAKKVVNNTLDALDIALFGRMVAKAADMNVEAAASFAHAISTHKVSNEVEFFTAVDDCKTEDESGSAHMGSLEFNSATYYRYVSLDLGQLAQTLGEDADMKTAVAAFVKALYVAVPSARQTTQSGACPWEYARVLLRKGQGLQASFEQPVKSQGEGFLSPSKAALKNWLHTKEKLSGSLFGKQGDYEWGEDLDYSIDRLIADLQSHL
>NZ_CP025541.1|WP_023286556.1|4580856_4581504_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTDLFASALHLDRAAVKALKISDAYSLHRVVYSLFADARTDREKCSHISSGIAYVDQGGDFHGRKILIVSDRPPAAKVDGLYGEVISKSIPAAFLSHSRYRFQVQVNPVRKDKQTGKRVAVKGRADIAQWFIQRAASRWGFDVDLPGLQVEAMEVLQFKDKAGRQVTLGKATVQGLLTVTDRQKFQHSFHHGIGKGRAFGCGLLQIVPVVDALFS
>NZ_CP025541.1|WP_004180297.1|4580297_4580864_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MDQVPADVTAESAGNESPAKRFVGYVIERIAKDNGFAARLKRADNPATEYQSWEILAGFGIDLEKEWQRLPYCVIGAALAKAKPASNGTITLGAAIAGCYPEGNQSEQAKARLRRLLACTSTSEACRILRPLLALMASRSVTPDFAGLLNELQWFSGSSRERIRARWAQEFYRRAGEAAGSEARNSHD
>NZ_CP025541.1|WP_004180298.1|4578762_4580286_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MENRFNLIDEPWIAVVDVGLVSLTDIFSQPELRALGGNPVEKIALTKLLLAIAQAAATPTDDSDWQQMGWQGMAHCCLQYLAKWHDRFYLYGEKPFLQMPAIQAAECKSLGVLSPEVSTGNTTVLTESQQQQQLTDADKALAIVMQMGFGLGGKKTDNSVVLTPGYRGKQNDKGKPGSGKAGVSVGHMGLLHSFWQGNSIVQSIWLNLFTAEDITQLAMYPTLGTAPWERMPTGEDDDIARSLKASLLGRLISMGKFCLLAEDGIHYSDGISHAGYLEGKTDPSVSVDFSGKKPKALWVNPGKRPWRELTSLLQFIEQDSPRGYETRQLSLPLKRITHHAEQFALWSGGLRVSSNAGEQYASGTDDYVQSEIWLSSDLINHTFLEYLKYEMTQLDAVQKQLWGAVVRYFRQLSDIDKSATGKAQPFVAKQAEKATTIFWQLCERQAQTLINACLNSGEDHTARLQLRKIFARYAGQVFDQLCPADSARQLDAWALARPNFSQYLTLD
>NZ_CP025541.1|WP_023327921.1|4576143_4578759_+|CRISPR-associated-helicase-Cas3'
MRRLIRVSLQNQHAIAAISFENCPAKTRMLSDGRVVQGRSVLSHCQIVGEIARALIALYPEPMRSRLFPAGSEMAAAGHDIGKVSPTFAAKIFAACDVNDHRLAGLSAVNPGLETLWGGHAGVSQATAESLHAPRYVPEILGQHHGFNLGLNGRRGDAEVFGGPLWFDERKKLVDKLKAEFSADWPTFDSAAQARVVAGLTSVADWIGSGEFFENPEQAWQPVITAALNNAGFIKPVIRQGLSFADVFFPDDPSKKPREAQSRFIDQVVGPGLYILEAQMGMGKTEAALYAAYQMLVQEKATGIYFALPTQLTSNKIYDRFNSFLHQIVSTETPQHALLLHSGAWLMDTEMGEEGSPGGAWFNHRKRGLLAPFAVGTIDQALMAVMNVKHGFVRAYGLAGKVVILDEVHTYDLYTGTILNALVEFLRQIDCTVIILSATLSQTRRDALLQQSTTSEAYPLITAAPSAERERGLVEIGVPVTENTTVILHSCRKDESAREEALRRAELGQQVLWIENTIAEAQQTYLDLASRAVEAGCETGLLHSRFTPQHRNRHEQRWVALYGRAGWPQRKQCGRILVGTQVLEQSLDIDADFLVSRFAPTDMLLQRLGRLWRHTDTPRHASAKAECWLLSPSLESALANPGSAFGMSAMVYSPYVLCRSLEVWQAIPSLSLPGDIRPLIDQTYTERAEEGTWATLLHELKNGSRFRSGEQALQSLAKLTLSTGGKTLPEHKAETRYSDRDTHDLLLLRGLRTQDGITYMRLLDGAELTLPHGRHRLSRAQWRQLAVVLNQQLVRVSPAFCPPTIAKSELEKLHLQEVFYLGRPEDDEALLRVAIVSPAGELKTLDGRPAGDKYTLEYSEYLGFRAISKKE
>NZ_CP025541.1|WP_071787027.1|4575909_4576089_+|hypothetical-protein
MNYVCPILSLGASKSFEFITRLEILFFILIIYSFLYYYFWLLSLIQCVVDVFDFIKSYL
>NZ_CP025541.1|WP_002908292.1|4574075_4575146_+|ABC-transporter-ATP-binding-protein
MIELSVENLHLTYGDNPVLKGVSMTLGRGEVVSLLGPSGSGKTTLLRAVAGLEKPTSGRIAIGNRTVYDGTPRSEIPAEERNLGLVFQSYALWPHKTVFDNVAYPLKLRKVAAGEIKERVQRVLDQLGLGHLGNRHPHQLSGGQQQRVAIGRALVYNPPVILLDEPLSNLDAKLREEARVFLRELIIKLGLSALMVTHDQNEAMAISDRILLLNNGVIEQQGTPQEMYGSPATLFAAEFMGSNNRLHGKVMALENGRARIEGASWSLWGRAGEGVSVGEPATAVIRVERLRLDGAAQDNSLQLPLLTSMYLGDRWEYLFRTEGDDFPLRAYGTALRDAEHCHLTLPAEDVWIFPQR
>NZ_CP025541.1|WP_023286552.1|4586214_4587330_+|hypothetical-protein
MFRLYQSHDLIRQLNPEDFQYILTPAGSLREACIHYDLSCEANGHSLAFGLPKEIYNSSPHKRPYERRQRSYADPIYDEVEHRLQIGWLVGVDISRCWSSDRNPFYIDDNGDLIFTPTASSYHAWFKDEIMNAYRHTIADRQGRRPAPTQRIQHNYNGSRIAPASKTLNSKTIGRLLAAGGIYNGNLEGFHETALQLGGDAPAGYDQIMGNKGLLIAGASFAAGLTMGRLNPLSELDELSSLSKIPAFESPYVKGFISENGTLVNAEYAVIDPKKLATYALDSTHPTGGHKARVFESALGYNPTNADVLAARIQKGVLSAPATILQTNNYGQTMAVDMPILGINGETAVIRTGWMYETDALVPRLTTIYVK
>NZ_CP025541.1|WP_023286551.1|4587340_4588024_+|DUF4926-domain-containing-protein
MKRAELDVVVLSEDLPNEGLVKGTLGTIVMVFNSPTTGYLVEFCDEKGKTIAMPVLFPAQLKRYFTIRNLKSLMVEGNYPIADPVDPDVMADLMHKVAPVEWEDKKRRVYEDIQRLLISRPDYADMFNIMDGGEYNGMTLYSLVQAENGEPAWSNIFVRNFDTRINEIYVDPNLIGKVVIGEEGMSVIVYSFTDDRFEIRDKVSSDYVIESHTHFNGLLSALIEPVS
>NZ_CP025541.1|WP_002908289.1|4588084_4588456_-|VOC-family-protein
MFDHVKFGVSDYAASKAFFLQALAPLGVTLVGEGEPSYGAELAGSGDASLCLYQSAEKPAPLHIAFRADSREQVDAFWQAALAAGGKDNGAPGLRPNYHASYYAAFVIAPDGHNIEAVCHLAG
>NZ_CP025541.1|WP_004194026.1|4588960_4589713_+|gluconate-2-dehydrogenase
MSSEKTNNSRRDFLVKSMALIPTVVIGGAGAGAIGVATSATAQAAPASEPASGNTAAASDWKPQFFNDREWAFINAAVARLIPADELGPGAKEAGVPEFIDRQLNTPYATGSIWYMQGPFNPDVPKEMGYQLPLVPKQIYNLGIADAEAWCQDKYHKTFAELSSEQQDEALGLWESGKAEFKQLPASLFFTYLLQNTREGFFSDPIHGGNKGMVGWTLINFPGARADFMDWVERGERYPFPPVSINGERA
>NZ_CP025541.1|WP_002908285.1|4589715_4591500_+|GMC-family-oxidoreductase
MATVLKKTDVAIVGFGWVGAIMAKELTEAGLNVVALERGPMRDTWPDGAYPQVIDELTYNIRRKLFQDLSKSTVTIRHNTSQQAVPYRQLAAFLPGTGVGGAGLHWSGVHFRVDPIELRMRSHYEERYGKNFIPQDMIIQDFGVTYDELEPFFDKAEKVFGTSGTAWSIKGKVVGKGRGGNAFAPDRSDDFPLPAQKNTWSAQLFEKAALEVGYHPYNLPSANTSDSYTNPYGAQMGPCNFCGFCSGYACYMYSKASPNVNILPALRQEKRFELRTNANVLKVNLTDDKSRATGVTYVDGQGREMEQPADLVIIGAFQFHNVHLMLLSGIGKPYNPETGEGVVGRNFAYQNMTTIKAIFDKDTYTNPFIGAGGNGVGVDDFNADNFDHGAAGFVGGSPFWVNQAGTKPISGFPVPPGTPAWGSKWKAAVADTYTHHLSMDAHGAHQSYRQNYLDLDPNYKNVFGQPLLRMTFDWQENDIKMAQFMFDKMAPIAKAMKPKYILGSPKNANSHFDTTTYQTTHMNGGAVMGEDPKTSAVNRYLQSWDVHNVFVIGASAFPQGLGYNPTGTVAALAYWSAKAIREQYLKNPGPLVQA
>NZ_CP025541.1|WP_004151164.1|4591513_4592851_+|alcohol-dehydrogenase
MKMQWLSALVLGALSCAAFAEEAPADSNLIKQGEYLARAGDCVACHTNGKAGKPFAGGLPMETPIGTIYSTNITPDKEHGIGGYTFEEFDDAVRKGVRKDGSTLYPAMPYPSFARISEADMRAMYAYFMHGVEPVNVANKDTDIPWPLSMRWPLAFWRGIFAPTPSDFVANPQVDPVLERGRYLVEGLGHCGACHTPRSLTMQEKALSESEGDDYLAGSNAPIDGWVASSLRGENRDGLGTWSEAELAEFLKTGRNDKSVVFGGMSDVVEHSLQYLSDDDITAIARYLKSLPPRGGKQTPAPVEDSVAKDLWKGNDSKTGAALYVDNCAACHRTDGAGYKRAFPSLKGNPVVQTEDATSLIHIVLTGSTTPAVKDAVSNLTMPSFGWRLDDQQVADVVNFIRTSWGNNAPAVSASDVAKVRKETAAHDEKALGNADISKLPGAGQ
>NZ_CP025541.1|WP_023286550.1|4592934_4593558_+|cytochrome-c-biogenesis-heme-transporting-ATPase-CcmA
MLHAERLTCIVDDRPLFAELTLSLAAGELLQVAGDNGAGKTSLLRILCGLARPESGGVSWQGQPLAKVRESFHRQLLWLGHKPGVNAALTADENLRFFFPASRLQQRERALAAVGLAGYEDLPLSQLSAGQQRRVALTRLWLTDAQLWILDEPFTALDATAMETLTYRLEQHARQGGSAILTTHQPLRPLRCPLRTLRLGGDAGGGQ
>NZ_CP025541.1|WP_017899585.1|4593554_4594214_+|heme-exporter-protein-CcmB
MMRALLARELRLAWRSGAEILNPLWFFLIVITLFPFGVGAAPQLLAQIAPGVVWVAALLAALLVMDRLFRDDWQDGSLEQLLLLPTPLVAVVLVKVVAHWMMSGLPLLIVSPLAALLLGMSVHDAGVLALTLLLGTPTLSFLGAVGVGLTVGLKRGGVLLSLLVLPLAVPLLIFATAACQAAAAGLPVGGYLAMLAAFLTASATLCPFATAAALRLTVQ
>NZ_CP025541.1|WP_023286549.1|4594263_4595001_+|heme-exporter-protein-C
MWKALHQLAIPERLYRLCGCWIPWLAALSALLLVIGLGWGFGFAPADYQQGESYRIMYLHVPAAMWSMGLYLAMAVAAFVGVVWQIKMADLAIAALAPVGAVCTLVALVSGAAWGKPMWGTWWIWDARLTSELVLLFLYAGVIALWHAFDDRRLAGRAAGILVLVGVVNLPIIHYSVYWWNTLHQGSTNLQQTIDPSMRLPLRICIFAFLALSVTLTLMRLRNLILQLERRRPWVVALANKGAVR
>NZ_CP025541.1|WP_023286548.1|4594997_4595228_+|heme-exporter-protein-CcmD
MSPAFSSFAAFLNMGGYAQYVWLAVAVAVAAFGLLTVHTLWARRALFHEVRRQQARERRIAAAREHDKEAADASAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025541_2	2.2\|4575488\|33\|NZ_CP025541\|PILER-CR,CRT	4575488-4575520	33	MN013086	Klebsiella phage vB_Kpn_Chronis, complete genome	7591-7623	0	1.0
NZ_CP025541_3	3.19\|4585611\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585611-4585643	33	NC_048647	UNVERIFIED: Klebsiella phage KNP2 genomic sequence	113213-113245	0	1.0
NZ_CP025541_3	3.19\|4585611\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585611-4585643	33	KX452695	UNVERIFIED: Klebsiella phage KPN2 genomic sequence	113213-113245	0	1.0
NZ_CP025541_3	3.19\|4585611\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585611-4585643	33	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	109191-109223	0	1.0
NZ_CP025541_2	2.1\|4575427\|33\|NZ_CP025541\|PILER-CR,CRT	4575427-4575459	33	MN013086	Klebsiella phage vB_Kpn_Chronis, complete genome	1453-1485	1	0.97
NZ_CP025541_2	2.7\|4575487\|34\|NZ_CP025541\|CRISPRCasFinder	4575487-4575520	34	MN013086	Klebsiella phage vB_Kpn_Chronis, complete genome	7591-7624	1	0.971
NZ_CP025541_3	3.19\|4585611\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585611-4585643	33	MT939253	Klebsiella phage vB_KpnM_Seu621, complete genome	120983-121015	1	0.97
NZ_CP025541_3	3.19\|4585611\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585611-4585643	33	MK024806	Proteus phage Mydo, complete genome	31076-31108	1	0.97
NZ_CP025541_3	3.19\|4585611\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585611-4585643	33	NC_028659	Klebsiella phage vB_KpnM_KB57, complete genome	122390-122422	1	0.97
NZ_CP025541_3	3.21\|4585733\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585733-4585765	33	KY271395	Klebsiella phage 2b LV-2017, complete genome	18470-18502	1	0.97
NZ_CP025541_3	3.21\|4585733\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585733-4585765	33	KY271396	Klebsiella phage 2 LV-2017, complete genome	26199-26231	1	0.97
NZ_CP025541_3	3.21\|4585733\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585733-4585765	33	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	19646-19678	1	0.97
NZ_CP025541_2	2.5\|4575671\|33\|NZ_CP025541\|PILER-CR,CRT	4575671-4575703	33	MN098327	Klebsiella phage Mulock, complete genome	25513-25545	2	0.939
NZ_CP025541_2	2.5\|4575671\|33\|NZ_CP025541\|PILER-CR,CRT	4575671-4575703	33	KY271400	Klebsiella phage 6 LV-2017, complete genome	17605-17637	2	0.939
NZ_CP025541_2	2.6\|4575426\|34\|NZ_CP025541\|CRISPRCasFinder	4575426-4575459	34	MN013086	Klebsiella phage vB_Kpn_Chronis, complete genome	1452-1485	2	0.941
NZ_CP025541_3	3.6\|4584818\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4584818-4584850	33	MN106244	Klebsiella phage Soft, complete genome	1798-1830	2	0.939
NZ_CP025541_3	3.15\|4585367\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585367-4585399	33	MK416007	Klebsiella phage ST405-OXA48phi1.2, complete genome	38762-38794	2	0.939
NZ_CP025541_3	3.19\|4585611\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585611-4585643	33	NC_048682	Raoultella phage Ro1, complete genome	23436-23468	2	0.939
NZ_CP025541_3	3.19\|4585611\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585611-4585643	33	MT178275	Klebsiella virus KpS8, complete genome	121894-121926	2	0.939
NZ_CP025541_2	2.10\|4575670\|34\|NZ_CP025541\|CRISPRCasFinder	4575670-4575703	34	MN098327	Klebsiella phage Mulock, complete genome	25512-25545	3	0.912
NZ_CP025541_2	2.10\|4575670\|34\|NZ_CP025541\|CRISPRCasFinder	4575670-4575703	34	KY271400	Klebsiella phage 6 LV-2017, complete genome	17605-17638	3	0.912
NZ_CP025541_2	2.3\|4575549\|33\|NZ_CP025541\|PILER-CR,CRT	4575549-4575581	33	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	377538-377570	7	0.788
NZ_CP025541_2	2.8\|4575548\|34\|NZ_CP025541\|CRISPRCasFinder	4575548-4575581	34	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	377537-377570	7	0.794
NZ_CP025541_3	3.12\|4585184\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585184-4585216	33	NC_021910	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetNIM1c, complete sequence	77144-77176	7	0.788
NZ_CP025541_2	2.3\|4575549\|33\|NZ_CP025541\|PILER-CR,CRT	4575549-4575581	33	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	912546-912578	8	0.758
NZ_CP025541_3	3.9\|4585001\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585001-4585033	33	NZ_CP027853	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence	223169-223201	8	0.758
NZ_CP025541_3	3.15\|4585367\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585367-4585399	33	NZ_CP012267	Cronobacter dublinensis subsp. dublinensis LMG 23823 plasmid pCDU1, complete sequence	57133-57165	8	0.758
NZ_CP025541_2	2.2\|4575488\|33\|NZ_CP025541\|PILER-CR,CRT	4575488-4575520	33	NZ_CP017304	Rhodococcus sp. YL-1 plasmid pYLL2 sequence	19104-19136	9	0.727
NZ_CP025541_2	2.2\|4575488\|33\|NZ_CP025541\|PILER-CR,CRT	4575488-4575520	33	NZ_CP039641	Azospirillum sp. TSH100 plasmid p2, complete sequence	17659-17691	9	0.727
NZ_CP025541_2	2.8\|4575548\|34\|NZ_CP025541\|CRISPRCasFinder	4575548-4575581	34	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	912546-912579	9	0.735
NZ_CP025541_3	3.9\|4585001\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585001-4585033	33	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	145808-145840	9	0.727
NZ_CP025541_3	3.11\|4585123\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4585123-4585155	33	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	109041-109073	9	0.727
NZ_CP025541_2	2.7\|4575487\|34\|NZ_CP025541\|CRISPRCasFinder	4575487-4575520	34	NZ_CP017304	Rhodococcus sp. YL-1 plasmid pYLL2 sequence	19104-19137	10	0.706
NZ_CP025541_2	2.7\|4575487\|34\|NZ_CP025541\|CRISPRCasFinder	4575487-4575520	34	NZ_CP039641	Azospirillum sp. TSH100 plasmid p2, complete sequence	17659-17692	10	0.706
NZ_CP025541_3	3.6\|4584818\|33\|NZ_CP025541\|PILER-CR,CRISPRCasFinder,CRT	4584818-4584850	33	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1908200-1908232	10	0.697

1. spacer 2.2|4575488|33|NZ_CP025541|PILER-CR,CRT matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 0, identity: 1.0

tggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
tggtcatcgcgccccttggcctgctctgcgctg	Protospacer
*********************************

2. spacer 3.19|4585611|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_048647 (UNVERIFIED: Klebsiella phage KNP2 genomic sequence) position: , mismatch: 0, identity: 1.0

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caataaacggcataagccggaacggatcgcggt	Protospacer
*********************************

3. spacer 3.19|4585611|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to KX452695 (UNVERIFIED: Klebsiella phage KPN2 genomic sequence) position: , mismatch: 0, identity: 1.0

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caataaacggcataagccggaacggatcgcggt	Protospacer
*********************************

4. spacer 3.19|4585611|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 0, identity: 1.0

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caataaacggcataagccggaacggatcgcggt	Protospacer
*********************************

5. spacer 2.1|4575427|33|NZ_CP025541|PILER-CR,CRT matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 1, identity: 0.97

cgatttacctcttccacccgcttggcgggaaaa	CRISPR spacer
cgatttacctcttccacccgctgggcgggaaaa	Protospacer
********************** **********

6. spacer 2.7|4575487|34|NZ_CP025541|CRISPRCasFinder matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 1, identity: 0.971

ctggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
atggtcatcgcgccccttggcctgctctgcgctg	Protospacer
 *********************************

7. spacer 3.19|4585611|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MT939253 (Klebsiella phage vB_KpnM_Seu621, complete genome) position: , mismatch: 1, identity: 0.97

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataagccggaacggatcgcggt	Protospacer
***.*****************************

8. spacer 3.19|4585611|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MK024806 (Proteus phage Mydo, complete genome) position: , mismatch: 1, identity: 0.97

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataagccggaacggatcgcggt	Protospacer
***.*****************************

9. spacer 3.19|4585611|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_028659 (Klebsiella phage vB_KpnM_KB57, complete genome) position: , mismatch: 1, identity: 0.97

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataagccggaacggatcgcggt	Protospacer
***.*****************************

10. spacer 3.21|4585733|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to KY271395 (Klebsiella phage 2b LV-2017, complete genome) position: , mismatch: 1, identity: 0.97

caaaaagcgattttttcgcagcagggtcttgca	CRISPR spacer
caaaaagcgactttttcgcagcagggtcttgca	Protospacer
**********.**********************

11. spacer 3.21|4585733|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to KY271396 (Klebsiella phage 2 LV-2017, complete genome) position: , mismatch: 1, identity: 0.97

caaaaagcgattttttcgcagcagggtcttgca	CRISPR spacer
caaaaagcgactttttcgcagcagggtcttgca	Protospacer
**********.**********************

12. spacer 3.21|4585733|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 1, identity: 0.97

caaaaagcgattttttcgcagcagggtcttgca	CRISPR spacer
caaaaagcgactttttcgcagcagggtcttgca	Protospacer
**********.**********************

13. spacer 2.5|4575671|33|NZ_CP025541|PILER-CR,CRT matches to MN098327 (Klebsiella phage Mulock, complete genome) position: , mismatch: 2, identity: 0.939

ttcatcacgtgtgagcggatttggctctatcct	CRISPR spacer
ttcatcacgtgtgagcggatctggttctatcct	Protospacer
********************.***.********

14. spacer 2.5|4575671|33|NZ_CP025541|PILER-CR,CRT matches to KY271400 (Klebsiella phage 6 LV-2017, complete genome) position: , mismatch: 2, identity: 0.939

ttcatcacgtgtgagcggatttggctctatcct	CRISPR spacer
ttcatcacgtgtgagcggatctggttctatcct	Protospacer
********************.***.********

15. spacer 2.6|4575426|34|NZ_CP025541|CRISPRCasFinder matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 2, identity: 0.941

ccgatttacctcttccacccgcttggcgggaaaa	CRISPR spacer
acgatttacctcttccacccgctgggcgggaaaa	Protospacer
 ********************** **********

16. spacer 3.6|4584818|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MN106244 (Klebsiella phage Soft, complete genome) position: , mismatch: 2, identity: 0.939

tctttatgtccgcttgcgaggcgatcagggtca	CRISPR spacer
tctttatgtcggcttgcgaggcgatcagtgtca	Protospacer
********** ***************** ****

17. spacer 3.15|4585367|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MK416007 (Klebsiella phage ST405-OXA48phi1.2, complete genome) position: , mismatch: 2, identity: 0.939

tcgcgttttatatggttgtcgctgtaccagcgc	CRISPR spacer
tcgcgcttaatatggttgtcgctgtaccagcgc	Protospacer
*****.** ************************

18. spacer 3.19|4585611|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_048682 (Raoultella phage Ro1, complete genome) position: , mismatch: 2, identity: 0.939

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataagccggaacggattgcggt	Protospacer
***.***********************.*****

19. spacer 3.19|4585611|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MT178275 (Klebsiella virus KpS8, complete genome) position: , mismatch: 2, identity: 0.939

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataaaccggaacggatcgcggt	Protospacer
***.***********.*****************

20. spacer 2.10|4575670|34|NZ_CP025541|CRISPRCasFinder matches to MN098327 (Klebsiella phage Mulock, complete genome) position: , mismatch: 3, identity: 0.912

cttcatcacgtgtgagcggatttggctctatcct	CRISPR spacer
attcatcacgtgtgagcggatctggttctatcct	Protospacer
 ********************.***.********

21. spacer 2.10|4575670|34|NZ_CP025541|CRISPRCasFinder matches to KY271400 (Klebsiella phage 6 LV-2017, complete genome) position: , mismatch: 3, identity: 0.912

cttcatcacgtgtgagcggatttggctctatcct	CRISPR spacer
attcatcacgtgtgagcggatctggttctatcct	Protospacer
 ********************.***.********

22. spacer 2.3|4575549|33|NZ_CP025541|PILER-CR,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.788

tgcgcgatatccgcgccgcgttagcgatgtggt	CRISPR spacer
tgcgcgagatccgcgccgtgttaggcagggggc	Protospacer
******* **********.*****  * * **.

23. spacer 2.8|4575548|34|NZ_CP025541|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.794

ctgcgcgatatccgcgccgcgttagcgatgtggt	CRISPR spacer
ctgcgcgagatccgcgccgtgttaggcagggggc	Protospacer
******** **********.*****  * * **.

24. spacer 3.12|4585184|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_021910 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetNIM1c, complete sequence) position: , mismatch: 7, identity: 0.788

caccctgcgtcgctggtactgccgcacgcaaaa	CRISPR spacer
ctctttgcgtcgcgggtattgccgcacgcacga	Protospacer
* *..******** ****.*********** .*

25. spacer 2.3|4575549|33|NZ_CP025541|PILER-CR,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 8, identity: 0.758

tgcgcgatatccgcgccgcgttagcgatgtggt	CRISPR spacer
tgcgcgatatcctcgccgcgtcagaggcgaagc	Protospacer
************ ********.** *..* .*.

26. spacer 3.9|4585001|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcgagttgccagcgcgccacgctgatccgcagg	CRISPR spacer
ttcacttgccagcgggacacgctgatccgtaat	Protospacer
*. * ********* * ************.*.

27. spacer 3.15|4585367|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012267 (Cronobacter dublinensis subsp. dublinensis LMG 23823 plasmid pCDU1, complete sequence) position: , mismatch: 8, identity: 0.758

tcgcgttttatatggttgtcgctgtaccagcgc	CRISPR spacer
ttcagggtgatatggttgtcgcggaaccagcgc	Protospacer
*.  *  * ************* * ********

28. spacer 2.2|4575488|33|NZ_CP025541|PILER-CR,CRT matches to NZ_CP017304 (Rhodococcus sp. YL-1 plasmid pYLL2 sequence) position: , mismatch: 9, identity: 0.727

tggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
atgatatcgcggcccttggcctgctcttcgtct	Protospacer
  * .****** *************** **..

29. spacer 2.2|4575488|33|NZ_CP025541|PILER-CR,CRT matches to NZ_CP039641 (Azospirillum sp. TSH100 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.727

tggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
acatattcgcgccccttcgcctgctgtgcgatc	Protospacer
  .*  *********** ******* **** *

30. spacer 2.8|4575548|34|NZ_CP025541|CRISPRCasFinder matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgcgatatccgcgccgcgttagcgatgtggt	CRISPR spacer
ttgcgcgatatcctcgccgcgtcagaggcgaagc	Protospacer
.************ ********.** *..* .*.

31. spacer 3.9|4585001|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 9, identity: 0.727

tcgagttgccagcgcgccacgctgatccgcagg	CRISPR spacer
ggcatgcgccagcgcgcctcgctgatgcgcacg	Protospacer
   *  .*********** ******* **** *

32. spacer 3.11|4585123|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 9, identity: 0.727

tggcatccgtgtaacgggaagcggccttgcgga	CRISPR spacer
tcatcgacatgtaactgaaagcggccttgcgga	Protospacer
* ..   *.****** *.***************

33. spacer 2.7|4575487|34|NZ_CP025541|CRISPRCasFinder matches to NZ_CP017304 (Rhodococcus sp. YL-1 plasmid pYLL2 sequence) position: , mismatch: 10, identity: 0.706

ctggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
gatgatatcgcggcccttggcctgctcttcgtct	Protospacer
   * .****** *************** **..

34. spacer 2.7|4575487|34|NZ_CP025541|CRISPRCasFinder matches to NZ_CP039641 (Azospirillum sp. TSH100 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.706

ctggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
gacatattcgcgccccttcgcctgctgtgcgatc	Protospacer
   .*  *********** ******* **** *

35. spacer 3.6|4584818|33|NZ_CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.697

tctttatgtccgcttgcgaggcgatcagggtca	CRISPR spacer
agcgcgttcccgctttcgaggcgatcaaggtca	Protospacer
  . ..* .****** ***********.*****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10581 : 60084

Klebsiella_phage(22.64%)

integrase,terminase,tail,holin

attL 26273:26287|attR 58870:58884

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050583641.1\|10581_13188_-	SGNH/GDSL hydrolase family protein	A0A286S1P0	Klebsiella_phage	7.9e-47	76.2
WP_023327995.1\|13265_16334_-	hypothetical protein	A0A286S259	Klebsiella_phage	0.0e+00	97.5
WP_004152651.1\|16330_16711_-	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
WP_023327996.1\|16720_17203_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.1e-82	95.0
WP_023327997.1\|17383_17848_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.5e-57	67.1
WP_023327998.1\|18162_18498_-	hypothetical protein	NA	NA	NA	NA
WP_101816707.1\|18581_21479_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	3.2e-105	32.8
WP_077264578.1\|21552_22035_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	4.9e-19	43.6
WP_004217333.1\|22031_22388_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_004217335.1\|22464_22641_-	hypothetical protein	NA	NA	NA	NA
WP_023328000.1\|22808_23291_-	hypothetical protein	NA	NA	NA	NA
WP_101816708.1\|23345_24518_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	9.4e-24	27.0
WP_004190640.1\|24541_24934_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_023286295.1\|24930_25482_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.0e-28	39.9
WP_064146239.1\|25483_25867_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	1.2e-20	45.2
WP_016946677.1\|25853_26087_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
WP_004190649.1\|26096_26351_-	hypothetical protein	J9Q7U0	Salmonella_phage	8.0e-21	52.4
26273:26287	attL	NA	NA	NA	NA
WP_023300922.1\|26352_26748_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	43.3
WP_004190653.1\|27069_28023_-	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
WP_004190654.1\|28033_28819_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.7e-66	63.4
WP_023328003.1\|28903_30016_-	hypothetical protein	I6PD76	Cronobacter_phage	1.6e-110	54.9
WP_022631477.1\|29999_31400_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	9.2e-127	53.5
WP_004190663.1\|31399_32707_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
WP_004218556.1\|32684_33689_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
WP_004244013.1\|34237_34423_-	hypothetical protein	NA	NA	NA	NA
WP_004218558.1\|34551_34797_-	DUF2560 domain-containing protein	A0A286N2R1	Klebsiella_phage	4.6e-34	96.3
WP_019405025.1\|35610_35805_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.4e-25	89.1
WP_004190672.1\|35755_36031_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_004190674.1\|36027_36372_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
WP_008807831.1\|36368_36908_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	1.5e-101	99.4
WP_047694604.1\|36904_37216_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	8.5e-49	99.0
WP_072032791.1\|37816_38263_+	hypothetical protein	NA	NA	NA	NA
WP_047694602.1\|38168_38426_-	hypothetical protein	A0A286N2Q3	Klebsiella_phage	2.4e-41	97.6
WP_023287514.1\|38760_39582_-	antitermination protein	K7PKS8	Enterobacteria_phage	1.1e-98	67.5
WP_020804605.1\|39697_40054_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	3.3e-41	63.2
WP_020804598.1\|40050_40347_-	DUF1364 domain-containing protein	E5AGG0	Erwinia_phage	1.7e-35	74.5
WP_072122536.1\|40349_40556_-	hypothetical protein	H6WRY8	Salmonella_phage	1.2e-22	69.7
WP_101816710.1\|40555_41155_-	hypothetical protein	K7PKS6	Enterobacteria_phage	9.5e-89	77.9
WP_032735916.1\|41565_41799_-	XRE family transcriptional regulator	K7PM44	Enterobacteria_phage	2.9e-25	70.1
WP_048270046.1\|42059_42380_-	hypothetical protein	NA	NA	NA	NA
WP_040198779.1\|42497_44357_-	DNA methyltransferase	H9C171	Pectobacterium_phage	1.6e-211	57.8
WP_040198816.1\|44353_44611_-	hypothetical protein	NA	NA	NA	NA
WP_040198781.1\|44619_44871_-	hypothetical protein	S5MQM0	Escherichia_phage	2.8e-10	52.8
WP_101816711.1\|44867_45068_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	3.7e-21	76.9
WP_040198784.1\|45064_45433_-	DUF977 domain-containing protein	H6WRX9	Salmonella_phage	2.9e-11	39.0
WP_048270039.1\|45440_46190_-	DNA replication protein DnaC	H6WRX8	Salmonella_phage	9.3e-118	81.5
WP_048270174.1\|46192_47032_-	hypothetical protein	Q8HA96	Salmonella_phage	8.8e-24	53.1
WP_048270038.1\|47097_47892_-	hypothetical protein	C7BGF1	Burkholderia_phage	9.7e-65	51.7
WP_048270037.1\|48020_48557_-	hypothetical protein	K7PJT7	Enterobacteria_phage	5.2e-62	71.2
WP_023320775.1\|48559_48787_-	transcriptional regulator	H6WRX5	Salmonella_phage	3.4e-15	50.0
WP_050485525.1\|48891_49326_+	transcriptional regulator	H6WRX4	Salmonella_phage	2.3e-15	39.0
WP_101816713.1\|49714_49906_+	DUF1482 domain-containing protein	NA	NA	NA	NA
WP_023282477.1\|49914_50070_+	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-14	71.2
WP_101816715.1\|50207_53468_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.7e-277	53.9
WP_101816717.1\|53480_54569_+	enterohemolysin	H6WRX0	Salmonella_phage	8.2e-107	56.0
WP_101816718.1\|54603_55254_+	morphogenetic protein	H2BDG4	Pseudomonas_virus	2.5e-42	44.4
WP_012542038.1\|55250_55559_+	hypothetical protein	I6PD68	Cronobacter_phage	4.2e-24	56.9
WP_004892750.1\|55566_55806_+	DUF4060 domain-containing protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
WP_101816720.1\|55815_56130_+	hypothetical protein	K7PM28	Enterobacteria_phage	2.1e-10	50.8
WP_101816721.1\|56026_57214_-\|integrase	integrase	K7PGY1	Enterobacteria_phage	5.4e-120	51.9
WP_004151901.1\|57390_58281_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|58280_59273_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
58870:58884	attR	NA	NA	NA	NA
WP_004140269.1\|59274_60084_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_2

451769 : 461233

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004224003.1\|451769_453491_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|453535_454237_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|454590_454809_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|454929_457209_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|457239_457557_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|457882_458104_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_071528213.1\|458058_458241_-	hypothetical protein	NA	NA	NA	NA
WP_023286192.1\|458180_460121_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|460117_461233_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_3

918163 : 990803

Cronobacter_phage(23.64%)

tail,holin,lysis,terminase,head,tRNA,integrase

attL 939905:939951|attR 987874:987920

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002892491.1\|918163_919681_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	9.5e-85	36.3
WP_023339104.1\|920012_921488_-	MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-47	28.7
WP_002892486.1\|921547_923695_-	lysine decarboxylase CadA	NA	NA	NA	NA
WP_023286110.1\|923777_925112_-	cadaverine:lysine antiporter	NA	NA	NA	NA
WP_004147422.1\|925477_927046_-	transcriptional regulator CadC	NA	NA	NA	NA
WP_004147421.1\|927125_927380_-	hypothetical protein	NA	NA	NA	NA
WP_002892402.1\|927339_927612_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_002892400.1\|927712_928633_-	lipid A biosynthesis lauroyl acyltransferase	A0A1W6JP29	Morganella_phage	5.4e-51	40.1
WP_023286109.1\|929143_930010_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016946536.1\|930032_931058_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_023328194.1\|931059_933495_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_101816770.1\|933505_934201_-	pilus assembly protein	NA	NA	NA	NA
WP_009485574.1\|934259_934820_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_004191501.1\|935931_936237_+	hypothetical protein	NA	NA	NA	NA
WP_023286107.1\|936289_937594_-	citrate synthase	NA	NA	NA	NA
WP_002892370.1\|938104_938275_+	hypothetical protein	NA	NA	NA	NA
WP_002892366.1\|938353_938755_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_002892360.1\|939150_939444_-	hypothetical protein	NA	NA	NA	NA
939905:939951	attL	NA	NA	NA	NA
WP_075647611.1\|940106_940445_-	hypothetical protein	K7PGV5	Enterobacterial_phage	9.6e-22	50.5
WP_101816772.1\|942174_942879_-	hypothetical protein	NA	NA	NA	NA
WP_101816774.1\|943045_945523_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	1.2e-198	45.4
WP_064164250.1\|945509_945905_-	hypothetical protein	F1C5F2	Cronobacter_phage	2.8e-36	54.8
WP_064164251.1\|945901_946372_-	hypothetical protein	F1C5F1	Cronobacter_phage	2.6e-25	37.9
WP_101817157.1\|946371_946791_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	2.4e-30	47.8
WP_072001734.1\|946961_947228_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_016531188.1\|947204_947384_-	hypothetical protein	NA	NA	NA	NA
WP_101816776.1\|947424_949998_-\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	1.3e-94	36.3
WP_048337553.1\|950089_950560_-	hypothetical protein	NA	NA	NA	NA
WP_077255485.1\|950615_950867_-	hypothetical protein	H6WRV3	Salmonella_phage	2.8e-26	62.7
WP_053065655.1\|951031_951610_-	hypothetical protein	NA	NA	NA	NA
WP_048287255.1\|951921_952677_-	DNA-binding protein	K7PH30	Enterobacteria_phage	2.1e-61	50.2
WP_075647506.1\|952895_953609_-	hypothetical protein	G0ZNE7	Cronobacter_phage	1.1e-62	54.6
WP_049185987.1\|953677_954442_-	DNA breaking-rejoining protein	G0ZNE6	Cronobacter_phage	1.2e-40	44.0
WP_023341847.1\|954501_954723_-	hypothetical protein	NA	NA	NA	NA
WP_075647505.1\|954725_955109_-	hypothetical protein	NA	NA	NA	NA
WP_023342738.1\|955105_955474_-	hypothetical protein	F1C5E3	Cronobacter_phage	1.0e-48	83.6
WP_032430935.1\|955476_955839_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	1.3e-19	48.3
WP_004223297.1\|955835_956219_-	hypothetical protein	NA	NA	NA	NA
WP_004223294.1\|956222_956393_-	hypothetical protein	Q5G8X7	Enterobacteria_phage	3.4e-12	50.0
WP_012967729.1\|956392_956773_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.4e-29	56.1
WP_101816778.1\|956775_957069_-	hypothetical protein	NA	NA	NA	NA
WP_004178847.1\|957078_958176_-	hypothetical protein	F1C5E1	Cronobacter_phage	4.2e-151	73.6
WP_004178846.1\|958187_958619_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.4e-41	60.1
WP_101816781.1\|958622_960008_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.5e-166	64.2
WP_101816783.1\|960785_961790_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.9e-114	69.0
WP_101816785.1\|961716_963186_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.5e-148	56.3
WP_101816787.1\|963198_964671_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	1.5e-249	82.7
WP_101816789.1\|964670_965273_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	3.5e-75	75.6
WP_004178838.1\|965643_965973_+	hypothetical protein	NA	NA	NA	NA
WP_101816791.1\|966078_966543_-\|lysis	lysis protein	Q9AZ06	Salmonella_phage	2.4e-55	75.2
WP_023304960.1\|966539_967019_-	lysozyme	A5VW81	Enterobacteria_phage	1.9e-71	83.0
WP_032456970.1\|967002_967326_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	2.7e-42	80.4
WP_101817158.1\|968346_969114_-	hypothetical protein	A0A1B2I9V6	Erwinia_phage	3.4e-107	75.5
WP_023304882.1\|969940_970441_-	hypothetical protein	G8C7V7	Escherichia_phage	9.7e-87	90.9
WP_064164269.1\|970574_971210_-	NinG family protein	M9NYX8	Enterobacteria_phage	1.6e-81	77.0
WP_064164270.1\|971202_971871_-	protein-serine/threonine phosphatase	M9P0E4	Enterobacteria_phage	1.2e-103	77.9
WP_024264476.1\|971867_972035_-	hypothetical protein	K7P7K0	Enterobacteria_phage	7.8e-09	62.5
WP_004223230.1\|972040_972637_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	2.1e-56	54.3
WP_043906731.1\|972732_972990_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	6.4e-26	76.6
WP_032428632.1\|972989_973277_-	hypothetical protein	NA	NA	NA	NA
WP_101816793.1\|973955_974600_-	hypothetical protein	Q1MVG0	Enterobacteria_phage	1.5e-108	78.4
WP_023158884.1\|974596_974857_-	DUF4752 domain-containing protein	T1S9K2	Salmonella_phage	7.4e-30	75.0
WP_101816795.1\|974853_975351_-	hypothetical protein	A0A193GYX5	Enterobacter_phage	3.5e-12	74.4
WP_101816797.1\|975347_975650_-	hypothetical protein	NA	NA	NA	NA
WP_101816798.1\|975646_976384_-	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	2.4e-65	54.8
WP_101817160.1\|976380_977346_-	replication protein	K7PGZ0	Enterobacteria_phage	8.5e-63	76.7
WP_020804197.1\|977405_978203_-	chromosome partitioning protein ParB	A0A2H4J902	uncultured_Caudovirales_phage	6.1e-91	72.8
WP_001548453.1\|978288_978510_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004178811.1\|978550_978784_-	transcriptional regulator	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
WP_071789738.1\|978888_979578_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.0e-86	70.6
WP_101817162.1\|979600_979720_+	hypothetical protein	NA	NA	NA	NA
WP_101816800.1\|979926_980718_+	hypothetical protein	NA	NA	NA	NA
WP_001548448.1\|980757_980961_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	5.4e-20	74.6
WP_008807814.1\|981388_981595_+	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_101816803.1\|981653_982166_+	hypothetical protein	A0A1W6DY33	Salmonella_phage	2.2e-33	45.3
WP_087802254.1\|982173_982371_+	thioredoxin reductase	NA	NA	NA	NA
WP_101816805.1\|982522_983176_+	single-stranded DNA-binding protein	A0A1W6JP21	Morganella_phage	4.4e-63	61.8
WP_087775319.1\|983159_983450_+	hypothetical protein	NA	NA	NA	NA
WP_068987121.1\|983446_983752_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_101816807.1\|983748_984405_+	DNA methyltransferase	G8C7S6	Escherichia_phage	3.5e-113	87.0
WP_086549568.1\|984401_985172_+	dcm methylase	D5LH17	Escherichia_phage	1.6e-64	52.6
WP_101816809.1\|985387_986080_+	hypothetical protein	M1F3E2	Salmonella_phage	4.8e-60	55.0
WP_101816811.1\|986076_986268_+	hypothetical protein	G9L698	Escherichia_phage	7.8e-13	64.4
WP_101816813.1\|986264_986483_+	conjugal transfer protein TraR	A0A0K2FI84	Escherichia_phage	3.6e-14	56.5
WP_101816814.1\|986696_987860_+\|integrase	integrase	G8C7S0	Escherichia_phage	8.6e-203	86.8
WP_071787017.1\|987929_988253_-	hypothetical protein	NA	NA	NA	NA
987874:987920	attR	NA	NA	NA	NA
WP_004143017.1\|988291_989158_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004143016.1\|989159_989372_+	ribosome-associated protein	NA	NA	NA	NA
WP_004143010.1\|989417_990803_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_4

3006641 : 3056014

Salmonella_phage(80.95%)

tail,plate,portal,head,tRNA,integrase,capsid

attL 2998842:2998857|attR 3019810:3019825

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2998842:2998857	attL	NA	NA	NA	NA
WP_101816928.1\|3006641_3007661_-\|integrase	integrase	F1BUS9	Erwinia_phage	4.4e-118	60.8
WP_101816930.1\|3007664_3008291_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	5.2e-37	38.4
WP_101816931.1\|3008390_3008627_+	regulator	NA	NA	NA	NA
WP_101816933.1\|3008661_3009171_+	hypothetical protein	A0A1S6L008	Salmonella_phage	6.0e-76	83.4
WP_004174277.1\|3009178_3009379_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	1.5e-27	87.7
WP_101816934.1\|3009342_3009684_+	hypothetical protein	A0A1S6L019	Salmonella_phage	4.2e-49	85.8
WP_019704181.1\|3009751_3009985_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	7.8e-31	90.9
WP_101816936.1\|3009984_3010212_+	hypothetical protein	A0A1S6L007	Salmonella_phage	1.2e-31	85.3
WP_101816937.1\|3010208_3011096_+	DNA adenine methylase	E5G6L8	Salmonella_phage	6.9e-120	75.9
WP_101816939.1\|3011076_3013485_+	endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	88.6
WP_004144689.1\|3013668_3013857_+	hypothetical protein	A0A1S6L006	Salmonella_phage	7.9e-26	98.4
WP_049182327.1\|3013870_3014104_+	DinI family protein	A0A1S6L014	Salmonella_phage	7.8e-31	84.4
WP_101816940.1\|3014179_3014437_+	hypothetical protein	NA	NA	NA	NA
WP_101816942.1\|3014788_3015811_+	hypothetical protein	NA	NA	NA	NA
WP_101816944.1\|3015849_3016875_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	3.3e-174	90.3
WP_101816946.1\|3016874_3018638_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	93.0
WP_101816948.1\|3018778_3019612_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	5.2e-101	75.8
WP_101816950.1\|3019628_3020693_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.8e-184	94.0
3019810:3019825	attR	NA	NA	NA	NA
WP_101816952.1\|3020696_3021347_+	hypothetical protein	E5G6M7	Salmonella_phage	3.1e-101	85.6
WP_101816954.1\|3021443_3021908_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	3.5e-75	86.4
WP_004144701.1\|3021907_3022111_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.7e-29	88.1
WP_004144702.1\|3022114_3022330_+	hypothetical protein	E5G6N0	Salmonella_phage	1.0e-29	88.7
WP_101816956.1\|3022310_3022820_+	glycoside hydrolase	E5G6N1	Salmonella_phage	7.3e-82	84.0
WP_101816958.1\|3022824_3023208_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	8.1e-17	42.9
WP_101816960.1\|3023204_3023633_+	hypothetical protein	A0A1S6KZX8	Salmonella_phage	2.8e-50	79.4
WP_101816962.1\|3023574_3023766_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.9e-20	71.4
WP_101816965.1\|3023728_3024151_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	5.9e-61	80.4
WP_101816967.1\|3024143_3024590_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.9e-52	71.6
WP_101816969.1\|3024656_3026411_-	hypothetical protein	NA	NA	NA	NA
WP_101816971.1\|3026493_3027066_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	6.7e-76	71.2
WP_101816973.1\|3027062_3027425_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.4e-48	83.9
WP_101816975.1\|3027411_3028320_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.2e-106	67.2
WP_101816977.1\|3028312_3028915_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.6e-59	62.2
WP_048336694.1\|3030509_3030827_+	hypothetical protein	NA	NA	NA	NA
WP_101816979.1\|3030882_3031965_+\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	6.4e-27	40.7
WP_047666934.1\|3032103_3033276_+\|tail	tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.5e-210	93.3
WP_101816980.1\|3033285_3033801_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	4.3e-82	86.0
WP_059065556.1\|3033853_3034153_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	4.8e-33	79.0
WP_002896220.1\|3034167_3034287_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_101816982.1\|3034279_3036907_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	3.9e-118	38.6
WP_101816983.1\|3036903_3037389_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.3e-61	79.5
WP_101816985.1\|3037385_3038483_+	late control protein D	E5G6Q3	Salmonella_phage	3.9e-173	84.4
WP_004174338.1\|3038553_3038772_+	hypothetical protein	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004144517.1\|3038784_3039162_-	hypothetical protein	NA	NA	NA	NA
WP_002917636.1\|3039489_3039996_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
WP_004174339.1\|3040095_3041937_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_004149864.1\|3042155_3043901_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-75	38.7
WP_001144069.1\|3044012_3044228_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_071526681.1\|3044226_3044457_+	hypothetical protein	NA	NA	NA	NA
WP_004900709.1\|3044465_3045479_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	59.2
WP_004181356.1\|3045523_3047131_-	allantoin permease	NA	NA	NA	NA
WP_002916877.1\|3047284_3047902_-	urease accessory protein UreG	NA	NA	NA	NA
WP_016532672.1\|3047910_3048585_-	urease accessory protein UreF	NA	NA	NA	NA
WP_002916875.1\|3048586_3049063_-	urease accessory protein	NA	NA	NA	NA
WP_023286881.1\|3049072_3050776_-	urease subunit alpha	NA	NA	NA	NA
WP_002916872.1\|3050768_3051089_-	urease subunit beta	NA	NA	NA	NA
WP_002916871.1\|3051098_3051401_-	urease subunit gamma	NA	NA	NA	NA
WP_002916869.1\|3051410_3052235_-	urease accessory protein UreD	NA	NA	NA	NA
WP_004144529.1\|3052224_3052371_+	short-chain dehydrogenase	NA	NA	NA	NA
WP_004144530.1\|3052632_3053250_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_004150923.1\|3053357_3053741_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
WP_004144532.1\|3053939_3054761_+	undecaprenyl-diphosphatase	NA	NA	NA	NA
WP_002916864.1\|3054772_3056014_-\|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	5.2e-89	50.1

DBSCAN-SWA_5

3538539 : 3547962

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101817018.1\|3538539_3540873_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.5
WP_101817020.1\|3540886_3541207_-	hypothetical protein	NA	NA	NA	NA
WP_004185275.1\|3541203_3541431_-	hypothetical protein	NA	NA	NA	NA
WP_101817021.1\|3541427_3541979_-	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.4e-32	69.3
WP_032426459.1\|3541975_3542242_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_101817023.1\|3542780_3543518_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	6.4e-71	60.2
WP_004185270.1\|3543514_3543760_+	hypothetical protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_101817025.1\|3543777_3544344_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.8e-58	63.2
WP_048290705.1\|3544947_3545340_+	hypothetical protein	NA	NA	NA	NA
WP_048290703.1\|3545327_3546506_+	hypothetical protein	NA	NA	NA	NA
WP_048290701.1\|3546603_3547962_-	SIR2 family protein	Q38324	Lactococcus_phage	2.3e-21	28.6

DBSCAN-SWA_6

3999236 : 4006141

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|3999236_4000100_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_019705220.1\|4000110_4000884_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_002912636.1\|4001124_4002018_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_101817038.1\|4002263_4003625_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|4003943_4004666_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|4004662_4006141_-	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_7

4047103 : 4055887

Klebsiella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101817041.1\|4047103_4048732_+	hypothetical protein	K9L8K6	Klebsiella_phage	7.2e-115	43.9
WP_014907233.1\|4048905_4050312_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	3.6e-38	28.7
WP_000926396.1\|4050548_4051964_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	8.9e-53	30.8
WP_023286699.1\|4051986_4053357_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.9e-31	26.0
WP_023286698.1\|4053520_4054687_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	2.7e-111	54.2
WP_023286697.1\|4054879_4055887_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.5e-30	28.6

DBSCAN-SWA_8

5057285 : 5068172

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023286399.1\|5057285_5060393_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_023286398.1\|5060447_5061713_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|5061743_5062832_-	hypothetical protein	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176262.1\|5062918_5063179_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_004176269.1\|5063476_5064337_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|5064357_5065119_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|5065379_5066282_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004224682.1\|5066293_5067559_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.8e-234	99.8
WP_002210516.1\|5067551_5068172_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP025541

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection