CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013943	Staphylococcus epidermidis strain DAR1907 chromosome, complete genome	4 crisprs	cas3,DEDDh,DinG,csa3,WYL	1	1	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013943_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013943_1

331967-332057

Orphan

Consensus_repeat	Method
CAACATAGAGAATTTCACCGAGAAATTCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013943_1

>merge|NZ_CP013943|1|331967-332057|CRISPRCasFinder
CAACATAGAGAATTTCACCGAGAAATTCAACAGGCAAAGCAAGTTGGGGTTCGGGGCCCCAACATAGAGAATTTCACCGGGAAATTCAACA

>NZ_CP013943|1|1|331967-332057|CRISPRCasFinder
CAACATAGAGAATTTCACCGAGAAATTCAACA	GGCAAAGCAAGTTGGGGTTCGGGGCCC
CAACATAGAGAATTTCACCGGGAAATTCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013943.1\|WP_001832120.1\|330659_331376_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP013943.1\|WP_002455993.1\|330047_330407_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
NZ_CP013943.1\|WP_011082612.1\|321366_323268_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
NZ_CP013943.1\|WP_001832143.1\|333008_334154_+\|nitric-oxide-dioxygenase	unknown	unknown	gnl\|CDD\|237337
NZ_CP013943.1\|WP_001832176.1\|326835_327495_+\|membrane-protein	unknown	unknown	gnl\|CDD\|223742
NZ_CP013943.1\|WP_001832056.1\|337992_338682_-\|DUF1129-family-protein	unknown	unknown	gnl\|CDD\|368981
NZ_CP013943.1\|WP_001832093.1\|336233_337442_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341024
NZ_CP013943.1\|WP_001832064.1\|334173_334359_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013943.1\|WP_001833013.1\|320627_321389_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP013943.1\|WP_001832058.1\|331375_331852_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380376
NZ_CP013943.1\|WP_001832142.1\|339120_339543_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130141
NZ_CP013943.1\|WP_001832181.1\|324421_325432_+\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP013943.1\|WP_001832101.1\|332162_332837_-\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	unknown	unknown	gnl\|CDD\|183940
NZ_CP013943.1\|WP_002484678.1\|327758_329933_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP013943.1\|WP_002438844.1\|334641_335241_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|225188
NZ_CP013943.1\|WP_001832044.1\|335321_336176_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013943.1\|WP_001832028.1\|337448_337937_+\|DUF456-domain-containing-protein	unknown	unknown	gnl\|CDD\|225395
NZ_CP013943.1\|WP_001832086.1\|325624_326425_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP013943.1\|WP_002457534.1\|323789_324407_+\|DUF47-domain-containing-protein	unknown	unknown	gnl\|CDD\|224310
NZ_CP013943.1\|WP_001832178.1\|339674_339971_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013943.1\|WP_001832120.1\|330659_331376_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	2.97069e-139
NZ_CP013943.1\|WP_002455993.1\|330047_330407_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.52342e-15
NZ_CP013943.1\|WP_011082612.1\|321366_323268_+\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	4.54274e-06
NZ_CP013943.1\|WP_001832143.1\|333008_334154_+\|nitric-oxide-dioxygenase	gnl\|CDD\|237337	PRK13289, PRK13289, NO-inducible flavohemoprotein.	2.15135e-120
NZ_CP013943.1\|WP_001832176.1\|326835_327495_+\|membrane-protein	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	3.08106e-29
NZ_CP013943.1\|WP_001832056.1\|337992_338682_-\|DUF1129-family-protein	gnl\|CDD\|368981	pfam06570, DUF1129, Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function.	0.00246668
NZ_CP013943.1\|WP_001832093.1\|336233_337442_+\|MFS-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.79377e-100
NZ_CP013943.1\|WP_001833013.1\|320627_321389_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.35373e-102
NZ_CP013943.1\|WP_001832058.1\|331375_331852_+\|cupin-domain-containing-protein	gnl\|CDD\|380376	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain. This family includes eukaryotic, bacterial, and archaeal proteins homologous to YML079wp, a Saccharomyces cerevisiae cupin-like protein of unknown function that structurally resembles plant seed storage and ligand-binding proteins (canavalin, glycinin, auxin binding protein) as well as the bacterial RmlC epimerase. YML079wp is non-essential in yeast and localizes to the nucleus and cytoplasm. The presence of a hydrophobic ligand within a well-conserved binding pocket inside the cupin beta-barrel and sequence similarity with bacterial epimerases suggests a possible biochemical function for YML079wp and its homologs. Also included in this family are Shewanella oneidensis So0799, Agrobacterium fabrum Atu3615 and Branchiostoma belcheri Bbduf985. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	5.85126e-71
NZ_CP013943.1\|WP_001832142.1\|339120_339543_+\|hypothetical-protein	gnl\|CDD\|130141	TIGR01069, Endonuclease_MutS2, MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. [DNA metabolism, Other].	0.00156082
NZ_CP013943.1\|WP_001832181.1\|324421_325432_+\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	3.05703e-103
NZ_CP013943.1\|WP_001832101.1\|332162_332837_-\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	3.23993e-150
NZ_CP013943.1\|WP_002484678.1\|327758_329933_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	5.21095e-20
NZ_CP013943.1\|WP_002438844.1\|334641_335241_+\|DUF402-domain-containing-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	6.52528e-71
NZ_CP013943.1\|WP_001832044.1\|335321_336176_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.11693e-40
NZ_CP013943.1\|WP_001832028.1\|337448_337937_+\|DUF456-domain-containing-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	2.3208e-34
NZ_CP013943.1\|WP_001832086.1\|325624_326425_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	2.45079e-38
NZ_CP013943.1\|WP_002457534.1\|323789_324407_+\|DUF47-domain-containing-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	4.24041e-54

>NZ_CP013943.1|WP_001832058.1|331375_331852_+|cupin-domain-containing-protein
MMTANDWIDRLELISHPEGGYFKETMRGDGKGRASFSSIYFLLTQRDISHFHRIDADEVWYYHAGQTLKIHMITPKGEYHTVKLGRDIDCGECLQYCVPKGTIFASTLDSAEGYSLVGCMCQPGFEYEHFELLTQEYLIRQYPQYESIIKRLAISQED
>NZ_CP013943.1|WP_001832120.1|330659_331376_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQTLRLVLERAKTYSVPNHIIDRAIDKAKGAGDENYDHLRYEGFGPNGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHTATFGVEGKSVDEVLETLMEQDIDVRDVIDDNGLTIVYAEPDQFAQVQDALREAGVEEFKVAEFEMLPQTDIELSEEDQAIFEKLIDALEDLEDVQNVFHNVDLK
>NZ_CP013943.1|WP_002455993.1|330047_330407_+|MarR-family-transcriptional-regulator
MNEQKLIKLLEFYKQYKALSGYIDKKYKLTLNDLAVLYLAKKYCLDERILMQTFLKLATGELDISRTKILMSIRRLIDKEKLNKVRSNRDERKIFLYMDENNMSEFDALFEDVEKFLSY
>NZ_CP013943.1|WP_002484678.1|327758_329933_+|AraC-family-transcriptional-regulator
MANSCLHILSKKEYTATRCQDGILLFWPIEGSMHFQQFMKERILSDELYIVNNMDVFSISDNGITLEVYISSDWFTELGYSFFNYHYISDLIQSKNEIKELVAQLTLNFLDNDVDKEQDIINKIVHILANEAIIDKKIAEDQYMYDYYGELKDELNYIYNHIEERLTLKDISNKLYVSKSNLSTQFHLLLGMGFKKYIDTLKISKSIEMLLTTTKTISQISETLGFSNVSTYSRQFKNYLSVTPNAYRAMKKYDKYNGCSDDDVSEHLKSRVQSLICSKMPTNELDNYDEIVIDQYPISNVSTFYSVVQINSIDEIKMLFLQGIHKKIGYEGSNIIFCIMPNLCQYKNSFSQEEMNDIIKIIIEYRLHVAFSIDKIEQIYELNQLFTYQYENLKIMNKCSVSDYNVQFIFNLNEKSIREIYRNILKIQNIELEYKIGLDISCMFNDTAQFKSLASQIKRLKFDYLYIDNARLKSPYLLDNEEGLLLKNILQFKHLIDDLKQFDFSSENLIFLNLYNHQLLNNNEIDLSNSAPLLFKTISKLKKHFKGYGLNVFSNPKVFNAVHLFDENGFKTTFGLIFNHLSWMTNQNQIEQRFYNIIENADQYYLYLYDWRVIESESNESDFKDVDIWINFEDEALIDEYICVIAKVDDEGGNINHMISQNLRHKYVWSTPFLMRVEENFRPYMHIMEHDFKKGPLKIRMKYNAVYLVEIYKKDKINKRRSTT
>NZ_CP013943.1|WP_001832176.1|326835_327495_+|membrane-protein
MSQSTHQSTDHKRQSQDKNQTHAYAKVWLYFMYYWMIFGIGCYFGQYLPMSWRKPLSLGLLILILATLFIKRARKYGLVISHIYAIIVGLLSYALFTTYLQNLGAEVFYKNIILAIGAFIAFGIIGYFLIKDASSMGKYLFVTLIALIIAGIIGIFINNPIFHTVITIVSLLLFLLYTLYDFNRMKRGQFSPREMGFNLFINLLNIIEDILSLANRFKN
>NZ_CP013943.1|WP_001832086.1|325624_326425_-|LysM-peptidoglycan-binding-domain-containing-protein
MKKLAFAITAASGAAAVLSHHDAEASTQHKVQSGESLWTIAQQYNTSVESIKQNNNLSNNMVFPGQVINVGGSASQNTSSNTSSSSASSHTVVAGESLNIIANKYGVSVDALMQANHLNGYLIMPNQILTIPNGGSGSGSGGTATQTSGNYTSPSFNHQNLYTEGQCTWYVFDKRSQAGKPISTYWSDAKYWASNAANDGYQVDNTPSVGAIMQSTPGPYGHVAYVERINGDGSILISEMNYANGPYNMNYRTIPASEVSSYAFIH
>NZ_CP013943.1|WP_001832181.1|324421_325432_+|inorganic-phosphate-transporter
MSYILIVTIAIVIFSLIFDFINGFHDTANAVATAVSTRALTPRRAILLAAVMNFIGALTFTGVAGTITKDIVDPFKLQHGLVVVLAAIIAAIIWNLITWLYGIPSSSSHALIGSIAGAAIASQGSFAVLHYQGFTKIIIVLIISPIIAFCVGYMMYTIVKIVFKNSNLTRTNRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVGNLQDGSNVEPQVWVKVACATAMGLGTAVGGWKIIKTVGGNIMKIRPANGAAADISSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMVVTWVITLPISAVLAAIIYFIIHLFLK
>NZ_CP013943.1|WP_002457534.1|323789_324407_+|DUF47-domain-containing-protein
MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDNIKTYESHGDELMHQVISDLNQTFITPIEREDILSLCNAIDDVLDAMEETSAMFEMYSIEYTDEYMAEFVENIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSMKHIFNSETDPITLIKIKDIYQSMEEIADKCQAVANNFETIIMKNS
>NZ_CP013943.1|WP_011082612.1|321366_323268_+|ABC-transporter-permease
MASIMSFNEIIFKNFKQNVTHYAIYLLSLVISVVLYFSFVTLKYAHHLHGNQSFPAIKEGSQVGSYFLFIIIVVFLLYANFLFLKRRGRELSLLQIIGLTKKDIMKMIMLEQLMTFMMTTIVGIILGIFGSKILLMIVLRLLGINVSVSIIFNYHAILETLLLIAVSYVLIVFQSYVYLLKRSIKELASDVNKKEFSHTRTTLGEVVLGLLGIIMIVSGYIMSTKLVDNVETIIQPFAILFLTVIGSYFFFRSTVSLIFKAIQRLRNGTVSVTDVMFTSPIIYRVKKNAFSLTVMTVVSAITVSVLCFAALSRSTLTNEVLLSSPHDVTLKNQKQANELAFKLNNRNIEHYYNYKEVVYAKVYKDHLFSEGVYRPKEITVTSDKYIPNVSTKKGQTDIIIPRGSLKDVVKTDKKRTAYVGSKKFRLKVSLRKGINKVYFMSDVDRGRPTLILNDEDYQKIREHIKEKNIVSQYGFDLKNKNDLPELEKLVSSINEDIETRSEAASEISSLTGILLFVTSFLGITFLIAAGCIIYIKQIDETEDELENYTILRKLGFTHQDMSKGLKLKVIFNFGLPLIIALLHAYFASLAYMHLMNVTNQIPIFIVMAVYTATYAVFAIIAYNHSKRTIKHSI
>NZ_CP013943.1|WP_001833013.1|320627_321389_+|ABC-transporter-ATP-binding-protein
MSILEVRQLSKVYGDKQAFQEVLKEINLDVDEGEFISIMGPSGSGKTTLLNVLSSIDYMTKGSITINGKQLEKLSNKQLSDIRKKDIGFIFQDYNILNTLTVKENIMLPLSVQKLDKQIMHERYQRIVEALNISDISDKYPSELSGGQRQRTSAARAFINLPSIIFADEPTGALDSKSTLDLLKRLKYMNEEFNTTILMVTHDPVAASFSNRVVMLKDGQIFTELYQGDDDKQTFYKEIIRTQSVLGGINYEL
>NZ_CP013943.1|WP_001832101.1|332162_332837_-|iron-sulfur-cluster-repair-di-iron-protein-ScdA
MITKEDIVADVVTDYPKSADIFRNAGIDFCCGGQESIASAVNHKPNIDLNSLLNKLNHIDNTEGNSTINPKFLNVESLIQYIQSAYHETLKEEFKNLTPYMTKLAKVHGPSHPYLLKLQDLYREFRDSMLDHIRKEDEEDFPKLIQYSQGQDVQNIKIILEDLINDHEDTGQLLNVMNQLTSDYQTPEEACGTWKLVYQRLQNIERQTHQHVHLENHVLFKKVS
>NZ_CP013943.1|WP_001832143.1|333008_334154_+|nitric-oxide-dioxygenase
MLTEKEQDIIKQTVPLLQDKGTEITSIFYPKMFEANPELLNMFNQTNQKKGMQSAALAQAVLAAAMNINNLGAIKPAIMPVAHKHCALQVYPEHYPIVGENLLAAIQDVTGLESDDPVIQTWAKAYGEIADVFIKLEQEIYNHMLWKGFKPFKITNITQETSDIKSFTVESEEYDLSQFEPGQYITVDVSSEKLPYRAKRHYSIIDGDENHLVFGVKRDVTTEHEGEVSTILHDEISEGDMINLSAPVGGFSIENTERPQLFIGSGVGMTPLVSMFKKAASLNVPTQMIQAVVTEDERPFAQKLDSITDNYEQAQLHLHVKDKEGYLEAKELEQYLSEQPEIYICGGTKFLHSIINSLKELNYDMNHVHFETFIPRLSVQV
>NZ_CP013943.1|WP_001832064.1|334173_334359_+|hypothetical-protein
MKMNPRYVKVFFLYLVSTFISNRLTTNKSLCKTLMQGILGYGLFALGLKYLTIKKKQHQAQ
>NZ_CP013943.1|WP_002438844.1|334641_335241_+|DUF402-domain-containing-protein
MTVKVKYIDKRHWRRLVEREYTEVKVNNNRFKGIIGLVTMKKVREPLEVTVVGQNIIVADDNYKWLQILPDKKRYSMTVMFDNKGNPLEYYFDINIKNITQKGNARTIDLCLDVLVLPNGEYELVDEDDLMYALQNKQISKKQYHEAYIIAHQLMIEIEDNFSEIQDKVMRCYHKINHKAQKMKHKRPYKAKKKSHRRH
>NZ_CP013943.1|WP_001832044.1|335321_336176_+|LysR-family-transcriptional-regulator
MKIDDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIEAAFGVEIFIRTKKQLITTTEGSMIIEHARDMLKRERLFFDKIQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNSQFPNVEIQVQVGSTEQIKAHHRDYHVMITRGNKVMNLSNTHLFNDEHYFIYPKDRKEDVTKLPFIEFQADPIYINQIKQWYNDHLGHDYHATITVDQVATCKEMLLSGVGVTILPKIMMKNIDKNMFEFEKVTIDKKPLIRSTYMSYDASMLQLPQVDAFVNLMLNFIR
>NZ_CP013943.1|WP_001832093.1|336233_337442_+|MFS-transporter
MFTALLQIKNYKLFVVNMLLLGMGIAVTVPYLILFATKDLGMTTTQYGLLLALAAISQFIVNSIIARFSDTHHLNRKILIITALFMGAVSFSIYFYVHQIWLFIVLYALFQGLFAPAMPQLYASARESINASSSRDRAKFANTVLRSMFSLGFLFGPFIGAQLIELKGYSGLFGGTIAIILFTLILQVFFYKNLPVKNQISEQQHIEKIAPNMFKDKSLFIPFIAFILLHIGQWMYTMNMPLFVTDYLNEKERYVGYLASLCAGLEVPFMVILGILSAKLPTRTLLIIGSVFGGAFYFSIGVFKNFHMMLVGQICLAIFLAILLGLGISYFQDILPDFPGYASTLFANAMVIGQLGGNLLGGVMSHWVGLENVFFVSASSIFVGMILILFTKDQKITIEDVE
>NZ_CP013943.1|WP_001832028.1|337448_337937_+|DUF456-domain-containing-protein
MTAILWILIIIAFALAFIGLIKPVIPSLLMLWIGFLIYQFGFHEGRLSWIFYVAMIIFTIMILVADFVMNKYFVNRFGGSKIGEYTALIGVIVGCFVFPPFGIIIIPFVAVFIVELVQGFNFQQAIKVSFGSVIAFLASTIAQGLIMIVMVIWFFLDVFLIN
>NZ_CP013943.1|WP_001832056.1|337992_338682_-|DUF1129-family-protein
MKSTAQLTKENNVKALRLNNTDREIFENYMTYVRADLRVNPHDSELMLNRTLKHLIRAGDTGMLAMEFFNHDPKAHAKKEIRELPNETFKNIFKYISHNFILLIGIFCFLKGLIGFFIGGDSNLLYLYTFPLTVIIGLVIIFLFIWMNFKTVQLQCFNNSYWTWWLTYGVIALLLITLFYVFFIPQSFLAFGPYIKVSNWTFIIIAIIIIPISFYVNHHFYNKEANTRI
>NZ_CP013943.1|WP_001832142.1|339120_339543_+|hypothetical-protein
MRKWLTLLLITTLVLTACGKSNEKASLEKSIDQLKKENKDLKKQKKKLQEQKDKLKHKQDSLQEDVNDLPAKSTSRDKKNKDNHDAKEKSSDNQSTSANHDDQTNKIKSNQDEHDSQSSKPHTQQKPSQNDRKNNHRQER
>NZ_CP013943.1|WP_001832178.1|339674_339971_+|hypothetical-protein
MHEQDFNILEGKKMTLVELGRELENLTGRTIKDTTSDIKRVIAHLPNFESDTDTFVATYHLNHQNDFIDATFVAPKNQSDRLKEIPVHIKLISYISKN

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Crispr_ID: NZ_CP013943_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013943_2

838107-838208

Unclear

Consensus_repeat	Method
TCATGTATAAGAAACACTAAATACCTATGTATTAAGTG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP013943_2

>merge|NZ_CP013943|2|838107-838208|CRISPRCasFinder
TCATGTATAAGAAACACTAAATACCTATGTATTAAGTGAAAAGAGGAACACATGAGCTTGAGGTTCATGTATAAAAAACACTAAATACCTATGTATTAAGTG

>NZ_CP013943|2|2|838107-838208|CRISPRCasFinder
TCATGTATAAGAAACACTAAATACCTATGTATTAAGTG	AAAAGAGGAACACATGAGCTTGAGGT
TCATGTATAAAAAACACTAAATACCTATGTATTAAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013943.1\|WP_001830113.1\|844664_846032_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP013943.1\|WP_101750525.1\|839507_843077_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_CP013943.1\|WP_002456578.1\|834822_835434_+\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
NZ_CP013943.1\|WP_001832559.1\|846741_847245_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP013943.1\|WP_002436293.1\|848087_848438_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP013943.1\|WP_002457379.1\|844301_844634_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_CP013943.1\|WP_002439483.1\|846339_846615_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NZ_CP013943.1\|WP_001830184.1\|838295_838529_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP013943.1\|WP_001830107.1\|829869_830058_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP013943.1\|WP_002456575.1\|838643_839381_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP013943.1\|WP_001830173.1\|828502_829147_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_CP013943.1\|WP_101750524.1\|835435_836413_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP013943.1\|WP_001830156.1\|830415_830790_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|224221
NZ_CP013943.1\|WP_001830161.1\|837333_838068_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NZ_CP013943.1\|WP_001830164.1\|829151_829787_+\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|273588
NZ_CP013943.1\|WP_002456580.1\|830804_832463_+\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|274671
NZ_CP013943.1\|WP_002469385.1\|836414_837341_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP013943.1\|WP_002456579.1\|832666_834715_+\|ATP-dependent-DNA-helicase-RecG	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP013943.1\|WP_001829466.1\|847244_847982_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP013943.1\|WP_002456573.1\|843073_844300_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686

Protein	Function_ID	Function_description	E-value
NZ_CP013943.1\|WP_001830113.1\|844664_846032_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP013943.1\|WP_101750525.1\|839507_843077_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_CP013943.1\|WP_002456578.1\|834822_835434_+\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	3.16807e-98
NZ_CP013943.1\|WP_001832559.1\|846741_847245_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.61565e-69
NZ_CP013943.1\|WP_002436293.1\|848087_848438_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	4.1359e-69
NZ_CP013943.1\|WP_002457379.1\|844301_844634_+\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	2.69203e-43
NZ_CP013943.1\|WP_002439483.1\|846339_846615_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	4.31598e-41
NZ_CP013943.1\|WP_001830184.1\|838295_838529_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.2999e-31
NZ_CP013943.1\|WP_001830107.1\|829869_830058_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
NZ_CP013943.1\|WP_002456575.1\|838643_839381_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	2.98269e-117
NZ_CP013943.1\|WP_001830173.1\|828502_829147_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	3.21388e-115
NZ_CP013943.1\|WP_101750524.1\|835435_836413_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	3.68008e-175
NZ_CP013943.1\|WP_001830156.1\|830415_830790_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	1.7844e-34
NZ_CP013943.1\|WP_001830161.1\|837333_838068_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	8.64489e-139
NZ_CP013943.1\|WP_001830164.1\|829151_829787_+\|thiamine-diphosphokinase	gnl\|CDD\|273588	TIGR01378, Thiamine_pyrophosphokinase, thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	5.23977e-73
NZ_CP013943.1\|WP_002456580.1\|830804_832463_+\|DAK2-domain-containing-protein	gnl\|CDD\|274671	TIGR03599, YloV, DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.	0
NZ_CP013943.1\|WP_002469385.1\|836414_837341_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.85618e-127
NZ_CP013943.1\|WP_002456579.1\|832666_834715_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP013943.1\|WP_001829466.1\|847244_847982_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	7.08021e-168
NZ_CP013943.1\|WP_002456573.1\|843073_844300_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0

>NZ_CP013943.1|WP_001830161.1|837333_838068_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MNKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNALSDDLKDQMLEQIPLKRFGEDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>NZ_CP013943.1|WP_002469385.1|836414_837341_+|ACP-S-malonyltransferase
MGKIAVVFPGQGAQKVGMASDLYNEEERSTRVLNLAQETVDFDLLETMFTDNDGKLGETENTQPALLTHSVALLESLNHLKVDYTMGHSLGEYSSLVSSGVLSFEDAVRIVRKRGQLMAQAFPNGVGGMAAVLGLDYDDVDKICQTLSTKEQLIEPANINSPGQIVVSGHKSLIDELVEKGKELGAKRVLPLAVSGPFHSSMMKVIEEDFANFINQFEWHNANYPVVQNVNAKGETDAEVIKRNMVKQLYSPVQFIQSTEWLINQGVDHFIEIGPGKVLSGLIKKINRDVKITSIQTLEDVKGWNNHE
>NZ_CP013943.1|WP_101750524.1|835435_836413_+|phosphate-acyltransferase-PlsX
MVKIAVDMMGGDDAPGIVLDAVKKAVEDFKDLEIILFGDESQYNLSHERIEFRHCTEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTTDGKGFVFLDVGANADAKAEHLLQYAQLGNIYAQKIRGIQNPSVSLLNIGTEAAKGNSLTKKAYDLFEKNQSFNFTGNIEAKTLMDGNVDVVVTDGYTGNMVLKNLEGTAKSIGKMLKETIISSFKNKLAGAVLKKDLETFAKKMDYSEYGGSVLLGLDGTVVKAHGSSNAKAFYSAIRQAKIAGEENIVQIMKDTVGE
>NZ_CP013943.1|WP_002456578.1|834822_835434_+|transcription-factor-FapR
MIFKEYLRLGTKMRGERLKLKKNDRRVAIKEAIELNPFITDYELCEKFDVSIQTIRLDRTHLNIPELRKRIKLVAEQNYGRIKSIEANEIIGDLIQVNPDVSAQSLIEITIDSVFAKSEIARGHVLFAQANSLCVALIHKPIVLTHESQVEFKEKVKLNDTVRADARVIDITDKHYIIEVNSYVSDMLVFKGKFKMYYTSEDE
>NZ_CP013943.1|WP_002456579.1|832666_834715_+|ATP-dependent-DNA-helicase-RecG
MSKVHLIESPYALDKIKGIGPKRLALLEELNIKSVEDLVLYLPTRYEDNTVIDLNQADDQATVTVQGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRNKQEINGNRIFFKDQKNQEDTHLEPIYRIKEGIKQKQLRDNIRQALSDVTIHEWLTDDLREKYKLETLAYTIQTLHHPINKQNLLRARRTYAFTELFMFELRMQWLNRLEKTSDEAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNTMNVALLTGSVKGKKRRLLLEQLENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSEHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQSGQFFEQQYSHLREFIKQNLRHIRFD
>NZ_CP013943.1|WP_002456580.1|830804_832463_+|DAK2-domain-containing-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTITSGREEVENNLSQNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIEEEKEISVQQFAESFQAGVETAYKAVMKPVEGTILTVAKDAAKAAMDYVDQAEDCVDLMAHLIEAASESLDNTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKGLKGEKIEAQAPKLDTESFVNDDHDFHGVINTEDIVYGYCTEMMVRFGKNKKAFDEQEFRNDMSEFGDSLLVINDDEIVKVHVHTEHPGDVFNYGQKYGELIKLKVENMREQHREVIRKEQDGLQSKEANESKTVETAIVTISVGDGIAELFKSMGATHIISGGQTMNPSTEDIVKVIEQSQCKRAIILPNNKNIMMASEQAASIVEAETVVIPTKSIPQGISALFQYDLESSLEDNKRHMSDALETVQSGSITFAVRDTKIDGIEIKKDEFMGLAEDKIVTSDVNQFHAVKGLLSKLLNEDSEILTMISGEDADNSITNQIINWIESEYPDVEVEQHEGGQPIYQYFFAVE
>NZ_CP013943.1|WP_001830156.1|830415_830790_+|Asp23/Gls24-family-envelope-stress-response-protein
MTLEISNDYGKIDISNDVIASVVGGKAVESYGIVGMASRQQVRDGIAEILGHDNYAKGIKVREDNGIIDVDMYIIVSYGVKISEVASNLQSTVKYTLEKTLNVKVNSINIFVQGVRVNETVKKV
>NZ_CP013943.1|WP_001830107.1|829869_830058_-|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNHRSHALNANKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>NZ_CP013943.1|WP_001830164.1|829151_829787_+|thiamine-diphosphokinase
MKINLLCSQRLLPNHIFEKEKDSNWAGIDRGALILVKQGIQPIFSVGDFDSVNNEERLMLMKNLQIEPVEAEKDDTDLALGVAQAVERGYTEITIYGATGGRLDHFMGVLQILQKPQYLHQSIKIKVIDQQNHIQLLNEGKYVINRDSTYPYISFIPLNDKTILTLQGFKYNLNQEHLNLGSTLTISNEVKVNEAIIRVEQGTVLKIRSRD
>NZ_CP013943.1|WP_001830173.1|828502_829147_+|ribulose-phosphate-3-epimerase
MVKILPSLLSIDFLNLKEELQLLETAKVDGLHFDVMDGKFVPNISIGIPILDAVRQQSHLPIDVHLMIEQPENYINLFAEHGADMISVHVESTTHIHRAIEQIKQLGKKAGVVINPGTSVETILPILSIVDYVLVMTVNPGFGGQTFIEQCVTKIEQLNQLKHENHLTFDIEVDGGINDQTSKRCVEQGATMLVTGSYFFKQEDYAKVTSLLKE
>NZ_CP013943.1|WP_001830184.1|838295_838529_+|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKYINSLEK
>NZ_CP013943.1|WP_002456575.1|838643_839381_+|ribonuclease-III
MANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLFDRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMKNKKSL
>NZ_CP013943.1|WP_101750525.1|839507_843077_+|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAKMEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGESEYYLNNDRARLKDIIDLFLDSGLGKEAFSIISQGRVDEILNAKPINRRQIIEESAGVLKYKKRKAESIQKLDHTEDNLNRVEDILYDLEGRVEPLKEEAAIAKEYKQLSKEMEQSDVIVTVSDIDHYTEDNQRLGERLNHLKSQQAEKEGQQAQINQLLQKYKGKRQQNDYDIEKLNYELVKATENYEQLSGKLNVLEERKKNQSETNARYEEELDNLESQIDSIKNEKAQNEKLLADLKNKQKQLNKEVQELESLLYISDEQHDEKLEEIKNSYYTLMSEQSVVNNDIRFLEHTINENEAKKSRLDSRLVEAFNQLKDIQQNITQTQKEYQSSKKSMEKVEQNIQQLEQQLTDSKRLLSEYENKLYQAYRYNEKLKSRIDSLATQEEDYTYFFNGVKHILKAKDKELRGIHGAVAEVINVPSEMTQAIETALGASLQHVIVDNEKDGRQAIQYLKQRGLGRATFLPLNVIQPRHVAADIKDVARGSQGFINIASDAINVSAKYQNIIENLLGNTIIVENLKHANELARAIRYRTRIVTLEGDVVNPGGSMTGGGARKTKSILSQKDELSTMRNQLEDYQRQTAEFERQFKEQKTQAEQLSEQYFSASQQYNNLKEQVHHHELELDRLKTQEAHLKNEHEEFEFEKNDGYQSDKSKETLKEKQNHLIEIQQQLKQLESDIERYTQLSKEGKASTHQTQQQLHQKQSDLAVVKERIKSQKQVYERLDKQLSDSERQKIEVNEKIKLFNSDEMMGKDAFEKLKEQIQQQENVRQNLNQQLSEIKQQRKDLNEKIEINESQLQKCHQDILFIENHYQDIKAKQSKLDVLINHAIDHLNDTYQLTVERARMEYDSDETIDNLRKKVKLTKMSIDELGPVNLNAIEQFEELNERYTFLNEQRTDLREAKETLEQIIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGGGQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAQYLNELSTETQFIVITHRKGTMEFSDRLYGVTMQESGVSKLVSVNLNTIDEVMKEEQA
>NZ_CP013943.1|WP_002456573.1|843073_844300_+|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFSSKSEDDIQKDLDETVDSNANSDSDSMDPNDSDEQVKPKKKPKKLSEADFDEDGLISIEDFEEIEAQKIGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDYSEAMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESYVYGLFADMIEQNEDIPEEISRNSSVESEEGN
>NZ_CP013943.1|WP_002457379.1|844301_844634_+|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQKNYLELFYLQDYSLSEIADTFEVSRQAVYDNIRRTGDLVEDYESKLRLYQRFEKRRELYNLMKQSLNQPELLKQYITQLEELE
>NZ_CP013943.1|WP_001830113.1|844664_846032_+|signal-recognition-particle-protein
MAFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSERALGSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKMANKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVSPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISKPDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSDKQIDHIKAIIQSMTPKERSNPETLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKAKRNQMQNMLKGMNLPF
>NZ_CP013943.1|WP_002439483.1|846339_846615_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQLGTYNPAHVNAPEVKIDEELALKWLHDGAKPTDTVHNILSREGILKKFDEQKNAK
>NZ_CP013943.1|WP_001832559.1|846741_847245_+|ribosome-maturation-factor-RimM
MEVEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVASYRIHKGFHMLRFEGINNINEIEHLKGDYIYQERDHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINIFETGANDVWVVKGEKEYLIPYIEDVVKDIDIETKTIKITPMEGLLD
>NZ_CP013943.1|WP_001829466.1|847244_847982_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKIDYLTLFPEMFEGVLNHSILKRAQDKGIINVNTINFRDYSINKHNQVDDYPFGGGQGMVLKPEPVFNAMEDINHNEHTRVILMCPQGRPFTQEIAQELSEAKHIVFICGHYEGYDERIRKHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNQASHQDDSFSDGLLEFPQYTRPREYKNMSVPEVLLSGNHAHIDQWRHEQKLIRTYEKRPDLLEQYPLTEKDREILETYKKKLKND
>NZ_CP013943.1|WP_002436293.1|848087_848438_+|50S-ribosomal-protein-L19
MSNHKLIEAVTKSQLRTDLPTFRSGDTLRVHVRIVEGSRERIQVFEGVVIKRRGGGISETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR

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Crispr_ID: NZ_CP013943_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013943_3

846139-846234

Unclear

Consensus_repeat	Method
CATGCATAACCAAAAGTACGATTTACTTCGTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013943_3

>merge|NZ_CP013943|3|846139-846234|CRISPRCasFinder
CATGCATAACCAAAAGTACGATTTACTTCGTAAAAGAGTAGTGGAACGCCTGAGCTAAAGCACATGCATAACCAAAAGTACGATTTACTTCGTAAA

>NZ_CP013943|3|3|846139-846234|CRISPRCasFinder
CATGCATAACCAAAAGTACGATTTACTTCGTAAA	AGAGTAGTGGAACGCCTGAGCTAAAGCA
CATGCATAACCAAAAGTACGATTTACTTCGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013943.1\|WP_001830113.1\|844664_846032_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP013943.1\|WP_101750525.1\|839507_843077_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_CP013943.1\|WP_001829514.1\|855360_856131_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NZ_CP013943.1\|WP_002504748.1\|848967_851571_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|226888
NZ_CP013943.1\|WP_002456578.1\|834822_835434_+\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
NZ_CP013943.1\|WP_001832559.1\|846741_847245_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP013943.1\|WP_002436293.1\|848087_848438_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP013943.1\|WP_002457379.1\|844301_844634_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_CP013943.1\|WP_002439483.1\|846339_846615_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NZ_CP013943.1\|WP_002456571.1\|851563_854164_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP013943.1\|WP_001829495.1\|854492_855356_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NZ_CP013943.1\|WP_002456575.1\|838643_839381_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP013943.1\|WP_101750524.1\|835435_836413_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP013943.1\|WP_001830184.1\|838295_838529_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP013943.1\|WP_001829483.1\|854358_854472_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013943.1\|WP_001830161.1\|837333_838068_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NZ_CP013943.1\|WP_002439496.1\|856238_857405_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP013943.1\|WP_002469385.1\|836414_837341_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP013943.1\|WP_001829466.1\|847244_847982_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP013943.1\|WP_002456573.1\|843073_844300_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686

Protein	Function_ID	Function_description	E-value
NZ_CP013943.1\|WP_001830113.1\|844664_846032_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP013943.1\|WP_101750525.1\|839507_843077_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_CP013943.1\|WP_001829514.1\|855360_856131_+\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	3.62396e-100
NZ_CP013943.1\|WP_002504748.1\|848967_851571_-\|YfhO-family-protein	gnl\|CDD\|226888	COG4485, COG4485, Predicted membrane protein [Function unknown].	0
NZ_CP013943.1\|WP_002456578.1\|834822_835434_+\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	3.16807e-98
NZ_CP013943.1\|WP_001832559.1\|846741_847245_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.61565e-69
NZ_CP013943.1\|WP_002436293.1\|848087_848438_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	4.1359e-69
NZ_CP013943.1\|WP_002457379.1\|844301_844634_+\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	2.69203e-43
NZ_CP013943.1\|WP_002439483.1\|846339_846615_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	4.31598e-41
NZ_CP013943.1\|WP_002456571.1\|851563_854164_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	5.33371e-168
NZ_CP013943.1\|WP_001829495.1\|854492_855356_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	7.55244e-160
NZ_CP013943.1\|WP_002456575.1\|838643_839381_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	2.98269e-117
NZ_CP013943.1\|WP_101750524.1\|835435_836413_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	3.68008e-175
NZ_CP013943.1\|WP_001830184.1\|838295_838529_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.2999e-31
NZ_CP013943.1\|WP_001830161.1\|837333_838068_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	8.64489e-139
NZ_CP013943.1\|WP_002439496.1\|856238_857405_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP013943.1\|WP_002469385.1\|836414_837341_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.85618e-127
NZ_CP013943.1\|WP_001829466.1\|847244_847982_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	7.08021e-168
NZ_CP013943.1\|WP_002456573.1\|843073_844300_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0

>NZ_CP013943.1|WP_001830113.1|844664_846032_+|signal-recognition-particle-protein
MAFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSERALGSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKMANKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVSPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISKPDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSDKQIDHIKAIIQSMTPKERSNPETLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKAKRNQMQNMLKGMNLPF
>NZ_CP013943.1|WP_002457379.1|844301_844634_+|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQKNYLELFYLQDYSLSEIADTFEVSRQAVYDNIRRTGDLVEDYESKLRLYQRFEKRRELYNLMKQSLNQPELLKQYITQLEELE
>NZ_CP013943.1|WP_002456573.1|843073_844300_+|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFSSKSEDDIQKDLDETVDSNANSDSDSMDPNDSDEQVKPKKKPKKLSEADFDEDGLISIEDFEEIEAQKIGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDYSEAMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESYVYGLFADMIEQNEDIPEEISRNSSVESEEGN
>NZ_CP013943.1|WP_101750525.1|839507_843077_+|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAKMEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGESEYYLNNDRARLKDIIDLFLDSGLGKEAFSIISQGRVDEILNAKPINRRQIIEESAGVLKYKKRKAESIQKLDHTEDNLNRVEDILYDLEGRVEPLKEEAAIAKEYKQLSKEMEQSDVIVTVSDIDHYTEDNQRLGERLNHLKSQQAEKEGQQAQINQLLQKYKGKRQQNDYDIEKLNYELVKATENYEQLSGKLNVLEERKKNQSETNARYEEELDNLESQIDSIKNEKAQNEKLLADLKNKQKQLNKEVQELESLLYISDEQHDEKLEEIKNSYYTLMSEQSVVNNDIRFLEHTINENEAKKSRLDSRLVEAFNQLKDIQQNITQTQKEYQSSKKSMEKVEQNIQQLEQQLTDSKRLLSEYENKLYQAYRYNEKLKSRIDSLATQEEDYTYFFNGVKHILKAKDKELRGIHGAVAEVINVPSEMTQAIETALGASLQHVIVDNEKDGRQAIQYLKQRGLGRATFLPLNVIQPRHVAADIKDVARGSQGFINIASDAINVSAKYQNIIENLLGNTIIVENLKHANELARAIRYRTRIVTLEGDVVNPGGSMTGGGARKTKSILSQKDELSTMRNQLEDYQRQTAEFERQFKEQKTQAEQLSEQYFSASQQYNNLKEQVHHHELELDRLKTQEAHLKNEHEEFEFEKNDGYQSDKSKETLKEKQNHLIEIQQQLKQLESDIERYTQLSKEGKASTHQTQQQLHQKQSDLAVVKERIKSQKQVYERLDKQLSDSERQKIEVNEKIKLFNSDEMMGKDAFEKLKEQIQQQENVRQNLNQQLSEIKQQRKDLNEKIEINESQLQKCHQDILFIENHYQDIKAKQSKLDVLINHAIDHLNDTYQLTVERARMEYDSDETIDNLRKKVKLTKMSIDELGPVNLNAIEQFEELNERYTFLNEQRTDLREAKETLEQIIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGGGQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAQYLNELSTETQFIVITHRKGTMEFSDRLYGVTMQESGVSKLVSVNLNTIDEVMKEEQA
>NZ_CP013943.1|WP_002456575.1|838643_839381_+|ribonuclease-III
MANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLFDRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMKNKKSL
>NZ_CP013943.1|WP_001830184.1|838295_838529_+|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKYINSLEK
>NZ_CP013943.1|WP_001830161.1|837333_838068_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MNKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNALSDDLKDQMLEQIPLKRFGEDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>NZ_CP013943.1|WP_002469385.1|836414_837341_+|ACP-S-malonyltransferase
MGKIAVVFPGQGAQKVGMASDLYNEEERSTRVLNLAQETVDFDLLETMFTDNDGKLGETENTQPALLTHSVALLESLNHLKVDYTMGHSLGEYSSLVSSGVLSFEDAVRIVRKRGQLMAQAFPNGVGGMAAVLGLDYDDVDKICQTLSTKEQLIEPANINSPGQIVVSGHKSLIDELVEKGKELGAKRVLPLAVSGPFHSSMMKVIEEDFANFINQFEWHNANYPVVQNVNAKGETDAEVIKRNMVKQLYSPVQFIQSTEWLINQGVDHFIEIGPGKVLSGLIKKINRDVKITSIQTLEDVKGWNNHE
>NZ_CP013943.1|WP_101750524.1|835435_836413_+|phosphate-acyltransferase-PlsX
MVKIAVDMMGGDDAPGIVLDAVKKAVEDFKDLEIILFGDESQYNLSHERIEFRHCTEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTTDGKGFVFLDVGANADAKAEHLLQYAQLGNIYAQKIRGIQNPSVSLLNIGTEAAKGNSLTKKAYDLFEKNQSFNFTGNIEAKTLMDGNVDVVVTDGYTGNMVLKNLEGTAKSIGKMLKETIISSFKNKLAGAVLKKDLETFAKKMDYSEYGGSVLLGLDGTVVKAHGSSNAKAFYSAIRQAKIAGEENIVQIMKDTVGE
>NZ_CP013943.1|WP_002456578.1|834822_835434_+|transcription-factor-FapR
MIFKEYLRLGTKMRGERLKLKKNDRRVAIKEAIELNPFITDYELCEKFDVSIQTIRLDRTHLNIPELRKRIKLVAEQNYGRIKSIEANEIIGDLIQVNPDVSAQSLIEITIDSVFAKSEIARGHVLFAQANSLCVALIHKPIVLTHESQVEFKEKVKLNDTVRADARVIDITDKHYIIEVNSYVSDMLVFKGKFKMYYTSEDE
>NZ_CP013943.1|WP_002439483.1|846339_846615_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQLGTYNPAHVNAPEVKIDEELALKWLHDGAKPTDTVHNILSREGILKKFDEQKNAK
>NZ_CP013943.1|WP_001832559.1|846741_847245_+|ribosome-maturation-factor-RimM
MEVEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVASYRIHKGFHMLRFEGINNINEIEHLKGDYIYQERDHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINIFETGANDVWVVKGEKEYLIPYIEDVVKDIDIETKTIKITPMEGLLD
>NZ_CP013943.1|WP_001829466.1|847244_847982_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKIDYLTLFPEMFEGVLNHSILKRAQDKGIINVNTINFRDYSINKHNQVDDYPFGGGQGMVLKPEPVFNAMEDINHNEHTRVILMCPQGRPFTQEIAQELSEAKHIVFICGHYEGYDERIRKHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNQASHQDDSFSDGLLEFPQYTRPREYKNMSVPEVLLSGNHAHIDQWRHEQKLIRTYEKRPDLLEQYPLTEKDREILETYKKKLKND
>NZ_CP013943.1|WP_002436293.1|848087_848438_+|50S-ribosomal-protein-L19
MSNHKLIEAVTKSQLRTDLPTFRSGDTLRVHVRIVEGSRERIQVFEGVVIKRRGGGISETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR
>NZ_CP013943.1|WP_002504748.1|848967_851571_-|YfhO-family-protein
MIKNIWNKPIKRFTLIVLVSCILSFILYGPFLYQFITKGIVFSGSGDGFRQMMPFQMYLYEHFTSLKGFYDASFGLGGDYVKSLAYYYSLSPLMWINFSMIWILEQTINVNPHDISFWPINQLIMAYVRTVITFIFSFYLFSYLRLKPAPMFIATILYGMSTVVTYYNFTWSFYGNLLIMLPMSLWAIERFFKERKIGWFIFAIAYTLFSNFYFSYYEAIVIGFYFIYRFAIPHEKDIVNRWQKLYILVCATLLSVLVSIYGLYTGISSFLDNDRAQNPNFKITFFTNLFETNYNIFADGFYITISFIAIIALFCFKLYQHYYYKLFAIATWILLIGSFSQWFDSAFNGFSLPQRRWVYFLALSTSVLIALFIQHLSEISIKEYTFVAIPVFIYGFIFIALSERSVKWMFVALILIIVLFIFIKYKSLLTRTSMMVLLVVLFLAQQVLMTNDSRKITIEPYQTTIKTINDSNYRSPVLNKKIKYMHQSSTDPLKRLDYFSYYALNSPLIYHYNGTSLYSSIFDGDILKYYDQTLQINMPVDKNSTYRYLNNRANLMSLWDVQDRLRHPDDLNMPYGFKKKELITDKKDQWIHSVNTINYPSAHITNKIYDARKLKSPLDREQAMLKGVVLNHKSQANTDFKPNPNLLSNAKQNLNHANWIDSKHLKVKQHNGGVTLNLPRNIVKNYKDMYIEMDVELLSPDKEHKVGVNEYSQERNRLSYKYRRFVSPVTMRAKASNQLNIKMSKGVYRFKVKGIYGENYQTLKKASQQLQPVKVKKERNGFTIIKKKKEHGYLVLPMVYAKGMHAMANGKPLKVQQGNGIMTTIPVKEGQTKIKLSYTPPYFYLLITVSCIGIILSILFTHYVKRK
>NZ_CP013943.1|WP_002456571.1|851563_854164_-|YfhO-family-protein
MRRKACFIILLITLSLIGHSYIIFRFHHDGVLSTGPNDGMEQMIPIQMYLYHQWTQGNLFYSTHLGLGGDFFTDLSYYFSTNLIFILNVPIIKLCEIFFSLNTNQILLWMYNALIVSIIKSTIALFCTYLFSYYISKNKIISLLISFIFVMSPLYFRFTIYWPFFSDTFIWLPLLLLGIERLLRDFKAGLFILTVSLILINNFYFAYYFLIIGIGYTLIRIIYRHPKDSLTRWQASLTIICSALLALGNSMFVFFHGVQSFLNNRRQSFTGQVNWIEHLNKDTNIFFDNYLIVVIFLSIQALLTIKLYKHFYYKLFALLLLATIIFAFLPFVDQLFNGFSAPQKRWHFILAFNSSILIGLFVKYFKTIRPKTYIYTNLIAQSVIYISSISYNTFLPWLSLVPVVSVIGLLILLIKEKKVRYYLTYLYSISIAALSLMITFVFIKNQIFFQDHINRANKRYINSSFYNSAIQRSLVKEMNQTKNDDQRINWRVDEQDNTPMYQNFKGLSIYSSIFHHNILDFYYDALKINLAEESVSRYQSTNARQNIESLFSVKYLMMKDYQNFIPSYFKKVKSRGQYIIYKNQLPLPSVKVTQNIYNHKSLKKPIDREHAMINGAIVTSKGTAYHSKVKNLLDQTRVSTQNITRYSNNELTVNKESGIIKLHLPKNIRDKYKDFYLTMNIKRGDPDSNYTVSINQYHNHRLYNDSIYRTGISKVLYRSLPDKNGDITIQLSPKGKFNLELLELNGENYDTLKQAHHHANFNMRYKDIKNGVKVNLDHHSKGLAVINIPYRKGMRAYVDDRQSNIKKVNYMMTGVPVNKNDKTITIQYRPPFLKTMFSISIFSIVVSIVFIRLKNIRKRKMRIRHD
>NZ_CP013943.1|WP_001829483.1|854358_854472_+|hypothetical-protein
MNRKMIFILNDARVKLKVVGLAIIKYNYEVIDKSLRK
>NZ_CP013943.1|WP_001829495.1|854492_855356_+|ribosome-biogenesis-GTPase-YlqF
MAIQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWEIYFKNEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKRHYNIDTHEDAEILDWFDAIGRRRGLLQKGNEVDYESVIELIINDMRNAKIGTYCFDILKEMKSE
>NZ_CP013943.1|WP_001829514.1|855360_856131_+|ribonuclease-HII
MSLTIKEIKEKLSRIETLEELHKHEANNDSRKGVINAIKSREKNILKQQALEEHYLSMNQYENNIMSSNRDALICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYGIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTLDIDIPQTSIIKGDAKSVSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEPIKSMMK
>NZ_CP013943.1|WP_002439496.1|856238_857405_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYANELLGKQLVTHQTGPEGKEVKRLYIEEGCDIQKEYYVGFVIDRATDKVTLMASEEGGTEIEEVAAQTPEKIFKETIDPVVGLSPYQARRIAFNINIPKESVGKATKFLLALYNVFIEKDCSIVEINPLVTTGDGQVLALDAKLNFDDNALFRHKDILELRDLEEEDPKEIEASKYDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDVGGGATKEKVTEAFKIILGDDNVKGIFVNIFGGIMKCDVIAEGIVAAVKEVELTLPLVVRLEGTNVERGKAILNESGLAIEPAATMAEGAQKIVKLVKEA

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Crispr_ID: NZ_CP013943_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013943_4

2223675-2223758

Orphan

Consensus_repeat	Method
CAACTTGCCTTGTCCGTGGAATTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013943_4

>merge|NZ_CP013943|4|2223675-2223758|CRISPRCasFinder
CAACTTGCCTTGTCCGTGGAATTTCTCGGTGAAATTCTCTTTGTTGGGGCCCCGAACCCCAACTTGCCTTGTCCGTAGAATTTC

>NZ_CP013943|4|4|2223675-2223758|CRISPRCasFinder
CAACTTGCCTTGTCCGTGGAATTTC	TCGGTGAAATTCTCTTTGTTGGGGCCCCGAACCC
CAACTTGCCTTGTCCGTAGAATTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013943.1\|WP_001831422.1\|2228399_2229209_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP013943.1\|WP_002438139.1\|2230887_2231064_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013943.1\|WP_086886641.1\|2219656_2221096_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143407
NZ_CP013943.1\|WP_002484424.1\|2227220_2228213_+\|D-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|183550
NZ_CP013943.1\|WP_002484434.1\|2222823_2223612_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|225312
NZ_CP013943.1\|WP_002456688.1\|2224440_2225934_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143435
NZ_CP013943.1\|WP_002438145.1\|2225933_2226065_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013943.1\|WP_001832881.1\|2214045_2216010_+\|fructose-1,6-bisphosphatase	unknown	unknown	gnl\|CDD\|226373
NZ_CP013943.1\|WP_001831409.1\|2231389_2231545_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013943.1\|WP_001831599.1\|2229552_2230164_-\|class-A-sortase-SrtA	unknown	unknown	gnl\|CDD\|130148
NZ_CP013943.1\|WP_101750573.1\|2226311_2226974_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380324
NZ_CP013943.1\|WP_001831616.1\|2212151_2213150_+\|thiazole-biosynthesis-adenylyltransferase-ThiF	unknown	unknown	gnl\|CDD\|274094
NZ_CP013943.1\|WP_001831535.1\|2222280_2222562_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NZ_CP013943.1\|WP_002484437.1\|2218373_2219423_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226458
NZ_CP013943.1\|WP_001831584.1\|2213257_2213872_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP013943.1\|WP_001831461.1\|2221166_2222114_-\|zinc-ABC-transporter-solute-binding-protein	unknown	unknown	gnl\|CDD\|238499
NZ_CP013943.1\|WP_126534841.1\|2231774_2232953_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP013943.1\|WP_001831463.1\|2230329_2230824_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP013943.1\|WP_080009951.1\|2216238_2218035_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP013943.1\|WP_002438161.1\|2218163_2218292_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013943.1\|WP_086886641.1\|2219656_2221096_+\|aldehyde-dehydrogenase	gnl\|CDD\|143407	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.	0
NZ_CP013943.1\|WP_002484424.1\|2227220_2228213_+\|D-lactate-dehydrogenase	gnl\|CDD\|183550	PRK12480, PRK12480, D-lactate dehydrogenase; Provisional.	0
NZ_CP013943.1\|WP_002484434.1\|2222823_2223612_+\|VOC-family-protein	gnl\|CDD\|225312	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only].	2.27772e-97
NZ_CP013943.1\|WP_002456688.1\|2224440_2225934_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
NZ_CP013943.1\|WP_001832881.1\|2214045_2216010_+\|fructose-1,6-bisphosphatase	gnl\|CDD\|226373	COG3855, Fbp, Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism].	0
NZ_CP013943.1\|WP_001831599.1\|2229552_2230164_-\|class-A-sortase-SrtA	gnl\|CDD\|130148	TIGR01076, Uncharacterized_protein_YhcS, LPXTG-site transpeptidase (sortase) family protein. This family includes Staphylococcus aureus sortase, a transpeptidase that attaches surface proteins by the Thr of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known. [Cell envelope, Other, Protein fate, Protein and peptide secretion and trafficking].	1.43034e-42
NZ_CP013943.1\|WP_101750573.1\|2226311_2226974_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	1.47086e-74
NZ_CP013943.1\|WP_001831616.1\|2212151_2213150_+\|thiazole-biosynthesis-adenylyltransferase-ThiF	gnl\|CDD\|274094	TIGR02356, molybdopterin_biosynthesis_protein_moeB, thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	3.34753e-109
NZ_CP013943.1\|WP_001831535.1\|2222280_2222562_+\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	1.79195e-31
NZ_CP013943.1\|WP_002484437.1\|2218373_2219423_+\|membrane-protein	gnl\|CDD\|226458	COG3949, COG3949, Uncharacterized membrane protein [Function unknown].	9.57735e-87
NZ_CP013943.1\|WP_001831584.1\|2213257_2213872_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.68558e-44
NZ_CP013943.1\|WP_001831461.1\|2221166_2222114_-\|zinc-ABC-transporter-solute-binding-protein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	1.52754e-112
NZ_CP013943.1\|WP_126534841.1\|2231774_2232953_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	3.09501e-19
NZ_CP013943.1\|WP_001831463.1\|2230329_2230824_+\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	8.8583e-62
NZ_CP013943.1\|WP_080009951.1\|2216238_2218035_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.45572e-43
NZ_CP013943.1\|WP_001831422.1\|2228399_2229209_-\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.03989e-48

>NZ_CP013943.1|WP_002484434.1|2222823_2223612_+|VOC-family-protein
MTNFHSIDATQVTNVTLNVKDLNKSTDFYSNVLGFSIEKQTNQQTVFNIGNLGYTLTLNELNNGRQPEFREAGLFHVAYLLPTRSDLADFLYHANNLNIAMGGGDHLVSEALYFTDPEGNGIEVYHDRPSEDWVWRDGFVKMDTLEVNVNDLMAQRSNEGWPEEGKIGHLHLKTHNLESAYEFYVEKLGFEHISNFPQALFMSTQKYHHHIATNTWQSNKIRTQNEQTYGLCHFDIYQPNANTTHVTSPEGFDITIHGNETK
>NZ_CP013943.1|WP_001831535.1|2222280_2222562_+|N-acetyltransferase
MAAEIKQGDHKFYVGNDENNPKAVITFKEVDNNEIDIDHTGVSDELGGQGLGKKLVNRVVEHARENNLKIIASCPFAKNVLEKDDHAQDVYLG
>NZ_CP013943.1|WP_001831461.1|2221166_2222114_-|zinc-ABC-transporter-solute-binding-protein
MKKLIIVSIIILMLSGCSSFDHRKRESINDKNKMKVYTTVYAFQSLTQQIGGKYVDAQSIYPAGADLHSYEPTQKDMIDIAKSDLFVYSSHQLDPVAAKITNSMTNNSMKLALAEGLKQSDFIHSKDHDENHEHHSHHEESNQDPHVWLDPVLNQKFAFMIKEKLIEKDPKHQAYYNKNYKIVNKDIVHIDQQLQSITKHYKRDKVVISHDSLGYLAHRYGFKEQGVKGMNDEEPSQKEILNIVKDIQHSHAPYVLYEQNITSKITDVIKKETDTKPLSFHNLAVLTKEEQNDDSISYQSLMKKNIYVLNRALNN
>NZ_CP013943.1|WP_086886641.1|2219656_2221096_+|aldehyde-dehydrogenase
MEVFNMTNQLFINNEFIESQSKETMDVINPATGEAFDTITLATEEEVNDAIEKSQQAQLEWERVPQPTRAEHVKLLIPLLEKNRDQIAQLYVKEQGKTLAQAYGEIDKSISFIDYMTSLSMSDKGRVLQNSIANETIQIINKPIGVTAGIVPWNAPILVLMRKVIPAIVTGCSVVIKPSEETTLLTLRLAELFRASTIPAGLIQIVPGTGETVGTQLASHKDIQLISLTGSMRAGKSVYENAAQTVKKVNLELGGNAPVIVTSNADLDKAVNYIVTARINNAGQVCTCPERIFVHEDVHDDFLNKVTSKMKSLTVGDPFDENTDYGAIINQKQLDSIHEKVQDAIKNGATLMTGGHQLKRHGFFYAPTVLDNVRKDYNVFKDEIFGPVLAITTYRDFEQVIEDANDTNAGLSSYIFSENLTEVMTATERLKFGEVYANCEAEEVVNGYHAGWRESGLGGADGIHGFEEYYNTTVSYIRY
>NZ_CP013943.1|WP_002484437.1|2218373_2219423_+|membrane-protein
MSNVKESIIVAFAFVGVVVGAGFATGQEIFQFFTSHGIYSIGGIFITGLIITLGGIFVLNTGFRLRSQNHSESIRYYLHPTIAKLFDIILTVFLFSLAIIMTAGGASTINESFGLPFWLSSLILVILILLTLFLKFDRLIAVLGGVTPFLVAVVVMIAVYYFITGDLNFSDVSQYSNQNKSISPGWWFDAINYASLQIAAAFSFLTVMGGKLRYQSSTIYGGLIGGIIVTLLLLLINFGLVTEFNQIKEVALPSLLLAKQISPSIGIIMSVIMVLVIYNTVVGLMYAFASRFSRPFTKRYYILIVMMAIITFACTFVGFISLIGKVFPIMGLFGFILLIPVIYKGILRK
>NZ_CP013943.1|WP_002438161.1|2218163_2218292_+|hypothetical-protein
MALDYTHLSAILFNHTTLKRAPYLYNSTYVANFTVYFFGKII
>NZ_CP013943.1|WP_080009951.1|2216238_2218035_-|sodium:proton-antiporter
MFNMSLELPVMLTIVLFLALGIFSQWLASRIKWPSIVVMAIVGLLVGPIFGLANPKEALGPEAFSSIVSLAVAIILFEGSSNLDFRELKGISKAVIRIITIGAGIAWILGAIALHVTMNFPLSISFVIGGLFLITGPTVIQPLLKQAKVKRNVDSVLRWESIILDPIGPIIALTAFYVFQIFEEGIGFVVIILFILKLLAAILIGFGAAFLFNWLIGQDKIPQSLMPPIQFVFILLTFSICDEILSESGLLAVTIFGLMMARKKRHDLIFKESDHFIDNASSILVSTVFILITSSLTKDVLLNVLSWQLILFSLVMIVLVRPISVLLSTLGTEITKKERAVVALMAPRGIVVLTVAQFFSSLFMDDKIPMAQYITPVTFGLVFITVVIYGFGFTPLSKLFGVASTEPPGVIIVGESEFSFHLGINLRDHGIPVMMFNLFENTSEKAHEAGFEVFKGNLLSSNDRIYSDLLRYNKCILMTQSFIFNSLAFNELVPEFGLNNVDMMPVSFNDEQARNNLNGPIRNHILFDENHTPRWFNQFITQHNIVEVPAEDYEKITENDMLIYHINEDKEVTFKRSNRDIPEHETGVYGILKNAYLT
>NZ_CP013943.1|WP_001832881.1|2214045_2216010_+|fructose-1,6-bisphosphatase
MTHITESEMKQKYLDLLSQKFDSAEKLATEIINLESILELPKGTEHFVSDLHGEYESFQHVLRNGSGNVRAKINDIFKDKLSQQEINDLAALVYYPEEKLKLVKNNFDSIGTLNIWYITTIQRLIDLITYCSSKYTRSKLRKALPEQYVYIIEELLYKSNEFHNKKPYYETLVNQIIELEQSDDLIIGLSYTVQRLVVDHLHVVGDIYDRGPKPDKIMDTLINYHSVDIQWGNHDVLWIGAYAGSKVCLANLLRICARYDNLDIIEDAYGINLRPLLTLAEKYYDAENPAFKPKKRPDKDVSLTKREESQITKIHQAIAMIQFKLEMPIIKRRPSFEMEERLVLEKIDYDNNEITIYNKTYPLKDTCFQTVNPNNPAELLAEEKEVMDKLLLSFQQSEKLRRHMSFLMRKGKLYLPYNGNLLIHGCIPVDENGEMESFEIEGERLSGRELLDVFEYHVRKAFDHKESTEDISTDLVWYLWTGKYSSLFGKRAMTTFERYFIEDKASHKEEKNPYYYLREDVDMIRKMLKDFGLNPDEGRIINGHTPVKEIDGEDPIKANGKMLVIDGGFSKAYQSTTGIAGYTLLYNSFGMQLVAHKEFNRKEKVLSMGADELSVKRVVDEELQRKKIRDTNIGKQLQDQIDILKILMHDRYLT
>NZ_CP013943.1|WP_001831584.1|2213257_2213872_+|DedA-family-protein
MEQIITDFISKWGYTAIFILILLENVLPVVPSEIILTFAGLLSVKSHLSIWTLLIIATIASFIGLLILYYICRLISEEKLYRFVDRHGKWMKLKSKDLKRANDWFKKYGAWAVFLCRFVPVLRVLITIPAGINRMNVIQFTTLSLIGTTIWNFALILLGRLLSDSFDALMNGIHTYSRIMYVIIIIAVIYFVIRYLMKRRRSVK
>NZ_CP013943.1|WP_001831616.1|2212151_2213150_+|thiazole-biosynthesis-adenylyltransferase-ThiF
MSRYERQTRFAPFGEEGQQKLSSSQILIFGAGALGSHIVDQLARMGAHHIAIVDMDIVEISNLHRQTLFDEEDAHTLISKVEAIKHKVNQININVNLTTYDLEVTSSNIENLIKNVEPDIIIDGMDNFKIRYLINEVCHKYQIPWVYGAAVGSKGSVYGIDHQGPCLKCLLQTIPDTGESCAINGVIPPVISMIASYEVAEAVRYLSGKGFSKQLITIDAFNINYKSMNVDALKNKDCPVCEKHEYTLLESQQERTIEDLCGNAYLFRFPPKAFKHAAHFPGNMVKSTSFAKLIQYQTYEFTLFKDGRMNAYGIHNDEEAHHLYNTLLKSIR
>NZ_CP013943.1|WP_002456688.1|2224440_2225934_-|aldehyde-dehydrogenase-family-protein
MTNINVRNYIDESYGLFINNEFQASDSGETLTVSNPANGEDLAKVARAGKKDVDKAVQAAHDAFDSWSKISKEERADYLLEISRRIHEKTEHLATVESLQNGKPYRETSTIDVPQAANQFKYFASVLTTDEGSVNEIDQNTMSLVVNEPVGVVGAVVAWNFPILLASWKLGPALAAGNTVVIQPSSSTPLSLIELAKIFQEVLPKGVVNVLTGKGSESGDAIFHHEGVDKLSFTGSTDVGYGVAQAGAERIVPTTLELGGKSANIIFDDANLEQVIEGVQLGILFNQGEVCSAGSRLLVQSSIYNELLPKLKEAFENIKVGDPFDEDTKMSAQTGPEQLDKIESYIKIAEEDDKANILTGGHRITDNGLDKGYFFEPTIIEINDNKHQLAQEEIFGPVVVVEKFDDEQEAIEIANDSEYGLAGGIFTTDIHRALNVAKAMRTGRIWINTYNQIPAGAPFGGYKKSGIGREVYKDAIKNYQQVKNIFIDTSNQTKGLY
>NZ_CP013943.1|WP_002438145.1|2225933_2226065_-|hypothetical-protein
MMMQTDNFALFTKEVKIGITLSKRLHFIRDKRLLQISLKKDGF
>NZ_CP013943.1|WP_101750573.1|2226311_2226974_-|NAD(P)H-dependent-oxidoreductase
MNQMNQTIIDAFHFRHATKEFDPTKKISDEDFNTILETGRLSPSSLGLEPWHFVVVQNKELREKLKAYSWGAQKQLDTASHFVLIFARKNVTAHTDYVQHLLRGVKKYEESTIPAVENKFDDFQESFHIADNERTLYDWASKQTYIALANMMTSAALLGIDSCPIEGFDLDKVTEIPSDEGVLDTEQFGISVMVGFGYRAQEPKHGKVRQNEDDIISWIE
>NZ_CP013943.1|WP_002484424.1|2227220_2228213_+|D-lactate-dehydrogenase
MTKIMFFGTRAYEKDMALRWGKKNNIDVTTSKELLSVDTVDQLKDYDGVTTMQFGKLESEVYPKLESYGIKQIAQRTAGFDMYDLELAKKHGIIISNIPSYSPETIAEYSVSIALQLVRKFPTIEKRVQAHNFTWASPIMSRPVKNMTVAIIGTGRIGAATGKIYAGFGAKVVGYDAYPNHSLSFLEYKETVEDAIKDADIISLHVPANKDSFHLFDNNMFKKVKKGAVLVNAARGAVINTPDLIEAVNNGTLSGAAIDTYENEANYFTFDWSNQTIEDPILLELIRNENILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCDTRLN
>NZ_CP013943.1|WP_001831422.1|2228399_2229209_-|HAD-family-hydrolase
MIKAIAVDMDGTFLDTNKQFDRNRFETIFKELIDKNIKFVAASGNQFAKLKSIFGDREMFFISENGAVIYKGNQLYNYRSFDQYIFQKVVNYLNLNQKINNLIICGVKSAYILKETSEAFKQDARTYYHQLIEIDSLQTLPDDDYVKIAFNINRQTHPDLDEKLALKFKEDIKLVSSGRDSIDVIMPNMTKGQALSRLLKEWQMPASHLMAFGDANNDKDMLELAEHSYVMANSEDKSLFNIARHVAPSNDEQGVLSTIENVVLGYSNK
>NZ_CP013943.1|WP_001831599.1|2229552_2230164_-|class-A-sortase-SrtA
MKQWMNRLITLIGVLLIILAIYLFSKPYIDNYLHEKDNDHKIENYDKKEKEQTKTSKSTPKIPSDKSKMAGYIEVPDAQIKEPVYPGPATPEQLNRGVSFAEGDESLNQQNISIAGHTFTDRSHYQFTNLKSAKIGSKVYFKTGNQTRKYKITKIRDVKPTEVKVLDEHPNKKNQLTLITCDDYNEETGVWETRKIFIATQIN
>NZ_CP013943.1|WP_001831463.1|2230329_2230824_+|N-acetyltransferase
MIRFARLEDLQDILTIYNDAILNTTAVYTYKPQQLDERLQWYQSKAKINEPIWVYEKEGKVVGFATYGSFRQWPAYLYTIEHSIYVHQQYRGLGIASQLLENLIRYAKEQSYRTIVAGIDASNMDSIALHKKFDFSHAGTIKNVGYKFGRWLDLSFYQYDLSDS
>NZ_CP013943.1|WP_002438139.1|2230887_2231064_-|hypothetical-protein
MLRLFLIFIAFIINTTITYLWTIEGTWPNLLFKSLSLSMIIVFMFYYIRFVIENKKED
>NZ_CP013943.1|WP_001831409.1|2231389_2231545_+|hypothetical-protein
MYKEYNMTQHTLPMESSVLIPTNNISRHVNDIAETIPDTEFDEFRHYRGLI
>NZ_CP013943.1|WP_126534841.1|2231774_2232953_-|IS110-family-transposase
MSKRSSVVAHYKNGKFQKEFFIQNNKNGYNYLLKYLNDLHHPQLIFESTGIYSRGMERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTLKQTGNLPIHELIFFELRERVRFHLEIENEQNRLKFQILELLHQTFPGLERLFSSRYSIIALNIAEIFTHPDMVLDIDKDVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNTFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013943_4	4.1\|2223700\|34\|NZ_CP013943\|CRISPRCasFinder	2223700-2223733	34	NZ_CP013943.1	1304554-1304587	2	0.941
NZ_CP013943_4	4.1\|2223700\|34\|NZ_CP013943\|CRISPRCasFinder	2223700-2223733	34	NZ_CP013943.1	1304613-1304646	2	0.941

1. spacer 4.1|2223700|34|NZ_CP013943|CRISPRCasFinder matches to position: 1304554-1304587, mismatch: 2, identity: 0.941

tcggtgaaattctctttgttggggccccgaaccc	CRISPR spacer
tcagtgaaattctttttgttggggccccgaaccc	Protospacer
**.**********.********************

2. spacer 4.1|2223700|34|NZ_CP013943|CRISPRCasFinder matches to position: 1304613-1304646, mismatch: 2, identity: 0.941

tcggtgaaattctctttgttggggccccgaaccc	CRISPR spacer
tcagtgaaattctttttgttggggccccgaaccc	Protospacer
**.**********.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	MN369743	Streptomyces phage Tribute, complete genome	80738-80763	4	0.846
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	MT310865	Streptomyces phage Bmoc, complete genome	78515-78540	4	0.846
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	MH576968	Streptomyces phage Wofford, complete genome	80704-80729	4	0.846
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	MF358542	Streptomyces phage Sushi23, complete genome	80852-80877	4	0.846
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	MK494112	Streptomyces phage EGole, complete genome	81544-81569	4	0.846
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	MF347639	Streptomyces phage Samisti12, complete genome	81875-81900	4	0.846
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	NC_042011	Streptomyces phage Peebs, complete genome	80496-80521	4	0.846
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	NZ_CP020749	Bacillus mycoides strain Gnyt1 plasmid unnamed6, complete sequence	9314-9339	5	0.808
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	CP024687	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence	200447-200472	5	0.808
NZ_CP013943_2	2.1\|838145\|26\|NZ_CP013943\|CRISPRCasFinder	838145-838170	26	MF358541	Streptomyces phage Warpy, complete genome	80974-80999	5	0.808

1. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to MN369743 (Streptomyces phage Tribute, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

2. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to MT310865 (Streptomyces phage Bmoc, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcg	Protospacer
**.*********** *********

3. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to MH576968 (Streptomyces phage Wofford, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aaatgaggaacacaggagcttgagca	Protospacer
*** ********** *********

4. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to MF358542 (Streptomyces phage Sushi23, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

5. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to MK494112 (Streptomyces phage EGole, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

6. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to MF347639 (Streptomyces phage Samisti12, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

7. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to NC_042011 (Streptomyces phage Peebs, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

8. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to NZ_CP020749 (Bacillus mycoides strain Gnyt1 plasmid unnamed6, complete sequence) position: , mismatch: 5, identity: 0.808

aaaagaggaacacatgagcttgaggt	CRISPR spacer
tatcaaggaactcatgagcttgaggt	Protospacer
 *  .****** **************

9. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to CP024687 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence) position: , mismatch: 5, identity: 0.808

aaaagaggaacacatgagcttgaggt	CRISPR spacer
tatcaaggaactcatgagcttgaggt	Protospacer
 *  .****** **************

10. spacer 2.1|838145|26|NZ_CP013943|CRISPRCasFinder matches to MF358541 (Streptomyces phage Warpy, complete genome) position: , mismatch: 5, identity: 0.808

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aaatgaggaacacaggagcttgaacc	Protospacer
*** ********** ********. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

365585 : 376121

Staphylococcus_phage(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001830355.1\|365585_366425_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-60	43.0
WP_011082622.1\|366566_366659_+	hypothetical protein	NA	NA	NA	NA
WP_001830351.1\|366627_367734_+	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	6.3e-62	43.2
WP_002438881.1\|367803_368769_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	1.8e-17	30.6
WP_001830352.1\|368858_369548_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-34	35.2
WP_001830332.1\|369522_369996_-	DoxX family protein	NA	NA	NA	NA
WP_001830329.1\|370046_370484_-	hypothetical protein	NA	NA	NA	NA
WP_010959136.1\|370889_370988_+	hypothetical protein	NA	NA	NA	NA
WP_001830315.1\|371079_371235_-	hypothetical protein	A0A146ICT8	Staphylococcus_phage	9.8e-14	75.5
WP_001830331.1\|371584_372184_-	hypothetical protein	NA	NA	NA	NA
WP_001830330.1\|372286_373000_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	1.6e-55	44.8
WP_001830341.1\|373000_373420_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_001830328.1\|373424_374096_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	4.1e-64	55.7
WP_001830349.1\|374392_374980_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
WP_001830323.1\|374969_376121_+	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	7.5e-26	39.6

DBSCAN-SWA_2

397549 : 407983

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002438897.1\|397549_399055_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	5.5e-61	34.0
WP_001832596.1\|399338_399839_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-50	70.1
WP_001829684.1\|399852_400728_-	DMT family transporter	NA	NA	NA	NA
WP_001829589.1\|401482_401881_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	2.0e-71	100.0
WP_001829582.1\|401843_403949_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	100.0
WP_001829597.1\|404067_405036_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	3.9e-185	100.0
WP_002456931.1\|405010_405274_+	hypothetical protein	A0A2H4IYB4	uncultured_Caudovirales_phage	5.5e-17	100.0
WP_002438902.1\|405289_406264_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	5.9e-165	99.7
WP_002438903.1\|406247_407207_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	4.1e-17	100.0
WP_001829596.1\|407203_407983_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.1e-18	33.6

DBSCAN-SWA_3

585563 : 590144

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001829295.1\|585563_585827_+	DUF4176 domain-containing protein	A0A1X9I6T6	Streptococcus_phage	1.5e-09	41.4
WP_107362610.1\|585937_586033_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_002467880.1\|586099_586303_-	hypothetical protein	A0A0N7GFG6	Staphylococcus_phage	1.5e-09	77.1
WP_002467879.1\|586403_586898_+	glucose-6-phosphate dehydrogenase	E3SKF6	Synechococcus_phage	3.1e-13	32.1
WP_077431490.1\|586904_587054_+	hypothetical protein	M4SJ15	Cyanophage	3.5e-08	51.0
WP_080033496.1\|587097_587787_+	glucose-6-phosphate dehydrogenase	E3SJC5	Synechococcus_phage	3.8e-25	35.3
WP_002485412.1\|588131_590144_+	ATP-binding cassette domain-containing protein	A0A1B1IVR3	uncultured_Mediterranean_phage	2.0e-106	36.3

DBSCAN-SWA_4

612345 : 641010

uncultured_Caudovirales_phage(64.81%)

protease,tail,integrase,capsid,head,portal,terminase

attL 610634:610649|attR 614207:614222

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
610634:610649	attL	NA	NA	NA	NA
WP_101750498.1\|612345_613395_-\|integrase	site-specific integrase	I6SMN0	Staphylococcus_virus	4.4e-198	99.4
WP_101750499.1\|613554_614223_-	hypothetical protein	A0A2H4J6W0	uncultured_Caudovirales_phage	1.2e-63	98.2
614207:614222	attR	NA	NA	NA	NA
WP_002504200.1\|614240_614699_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4J5R5	uncultured_Caudovirales_phage	2.8e-85	100.0
WP_002504199.1\|614720_615035_-	helix-turn-helix transcriptional regulator	A0A2H4JCJ2	uncultured_Caudovirales_phage	9.8e-53	100.0
WP_101750500.1\|615187_615400_+	helix-turn-helix transcriptional regulator	A0A2H4J3K6	uncultured_Caudovirales_phage	1.4e-31	98.6
WP_002504198.1\|615576_615801_-	hypothetical protein	A0A2H4JDC2	uncultured_Caudovirales_phage	1.5e-34	98.6
WP_002504197.1\|615850_616591_+	phage repressor protein	A0A2H4J436	uncultured_Caudovirales_phage	2.0e-133	97.6
WP_001830281.1\|616603_616813_+	hypothetical protein	A0A2H4J7I0	uncultured_Caudovirales_phage	9.7e-33	100.0
WP_002484728.1\|616959_617238_-	hypothetical protein	A0A2H4JB42	uncultured_Caudovirales_phage	1.7e-48	100.0
WP_101750501.1\|617570_617840_+	chordopoxvirus fusion protein	I6TG42	Staphylococcus_virus	1.0e-21	95.4
WP_100217686.1\|617811_618069_+	hypothetical protein	A0A0D4DCH8	Staphylococcus_phage	3.4e-19	60.0
WP_002485844.1\|618061_618706_+	DUF1071 domain-containing protein	A0A2H4J5F4	uncultured_Caudovirales_phage	6.4e-107	88.7
WP_101750502.1\|618695_619124_+	single-stranded DNA-binding protein	A0A2H4JCH6	uncultured_Caudovirales_phage	1.1e-49	96.2
WP_002485820.1\|619137_619812_+	hypothetical protein	I6TK06	Staphylococcus_virus	4.6e-124	96.4
WP_101750503.1\|619963_620665_+	DnaD domain protein	A0A2H4JEL5	uncultured_Caudovirales_phage	7.1e-120	97.0
WP_101750504.1\|620670_621024_+	hypothetical protein	A0A2H4J445	uncultured_Caudovirales_phage	1.1e-47	94.9
WP_001830247.1\|621013_622261_+	AAA family ATPase	A0A2H4JBL8	uncultured_Caudovirales_phage	8.0e-231	99.5
WP_001830239.1\|622257_622479_+	hypothetical protein	A0A2H4J7L3	uncultured_Caudovirales_phage	1.5e-36	100.0
WP_002469496.1\|622456_622702_+	hypothetical protein	A0A2H4J3I4	uncultured_Caudovirales_phage	1.9e-40	98.8
WP_002469467.1\|622711_623125_+	DUF1064 domain-containing protein	A1BU01	Staphylococcus_virus	4.0e-62	82.6
WP_002469486.1\|623111_623576_+	hypothetical protein	A1BU02	Staphylococcus_virus	2.3e-82	100.0
WP_002469484.1\|623527_623719_+	hypothetical protein	A1BU03	Staphylococcus_virus	5.0e-28	100.0
WP_101750505.1\|623719_624079_+	hypothetical protein	A1BU04	Staphylococcus_virus	1.6e-62	99.2
WP_101750506.1\|624075_624519_+	DUF3310 domain-containing protein	A0A2H4JCG6	uncultured_Caudovirales_phage	2.1e-64	80.3
WP_099800579.1\|624466_625096_+	hypothetical protein	A0A2H4J5T2	uncultured_Caudovirales_phage	4.9e-120	100.0
WP_101750507.1\|625098_625779_+	hypothetical protein	A0A141VTS7	Staphylococcus_phage	1.5e-130	99.1
WP_002500115.1\|625775_625961_+	hypothetical protein	A0A141VTS8	Staphylococcus_phage	4.1e-27	100.0
WP_101750586.1\|625957_626305_+	nuclease	A0A2H4J7K3	uncultured_Caudovirales_phage	2.4e-60	97.4
WP_101750508.1\|626308_626608_+	hypothetical protein	W5RV82	Staphylococcus_phage	6.4e-46	92.9
WP_001830273.1\|626597_626846_+	hypothetical protein	A1BUA9	Staphylococcus_virus	5.7e-40	100.0
WP_002504360.1\|626835_627015_+	DUF1024 family protein	A0A2H4JFK8	uncultured_Caudovirales_phage	2.0e-26	98.3
WP_101750509.1\|627007_627331_+	hypothetical protein	I6SB84	Staphylococcus_virus	5.5e-51	92.5
WP_142379577.1\|627341_627971_+	hypothetical protein	A0A2R3ZXK9	Staphylococcus_phage	9.7e-68	56.6
WP_101750510.1\|628024_628345_+	hypothetical protein	A0A2H4JGL4	uncultured_Caudovirales_phage	3.9e-49	88.5
WP_101750511.1\|628364_628568_+	DUF1381 domain-containing protein	H9A0T7	Staphylococcus_phage	2.4e-20	82.1
WP_002504175.1\|628580_628748_+	hypothetical protein	A0A0N9SKK8	Staphylococcus_phage	1.7e-24	98.2
WP_002500107.1\|628747_628897_+	DUF1514 family protein	A0A0N9S034	Staphylococcus_phage	1.2e-16	100.0
WP_002453536.1\|628913_629360_+	transcriptional regulator	A0A2H4J5S8	uncultured_Caudovirales_phage	1.6e-80	100.0
WP_049392021.1\|629955_630306_+	HNH endonuclease	A0A2H4J4K8	uncultured_Caudovirales_phage	7.8e-59	92.2
WP_002456394.1\|630477_630945_+\|terminase	phage terminase small subunit P27 family	A0A2H4J4D1	uncultured_Caudovirales_phage	2.8e-80	98.1
WP_002500103.1\|630931_632626_+\|terminase	terminase large subunit	A0A2H4JC16	uncultured_Caudovirales_phage	0.0e+00	98.8
WP_002500102.1\|632637_632832_+	hypothetical protein	A0A2H4J9T6	uncultured_Caudovirales_phage	5.3e-25	100.0
WP_002485821.1\|632831_634064_+\|portal	phage portal protein	A0A2H4JCP4	uncultured_Caudovirales_phage	7.6e-234	100.0
WP_002485849.1\|634053_634611_+\|head,protease	HK97 family phage prohead protease	A0A2H4JDE6	uncultured_Caudovirales_phage	7.0e-102	100.0
WP_002485824.1\|634651_635995_+\|capsid	phage major capsid protein	A0A2H4J4F8	uncultured_Caudovirales_phage	1.3e-197	98.9
WP_002485829.1\|636013_636355_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JB77	uncultured_Caudovirales_phage	3.3e-54	95.5
WP_002468167.1\|636344_636674_+	hypothetical protein	A0A2H4J4F9	uncultured_Caudovirales_phage	9.6e-59	100.0
WP_002485860.1\|636670_637075_+	hypothetical protein	A0A2H4J3L8	uncultured_Caudovirales_phage	2.4e-67	95.5
WP_002485830.1\|637079_637484_+	hypothetical protein	A0A2H4JEG7	uncultured_Caudovirales_phage	3.5e-71	98.5
WP_101750512.1\|637496_638126_+\|tail	phage tail protein	A0A2H4JCT8	uncultured_Caudovirales_phage	6.0e-110	96.2
WP_002456405.1\|638144_638330_+	hypothetical protein	A0A2H4J420	uncultured_Caudovirales_phage	1.3e-25	98.4
WP_002456406.1\|638393_638756_+	hypothetical protein	A0A2H4JH57	uncultured_Caudovirales_phage	3.6e-59	99.2
WP_002456407.1\|638788_638941_+	hypothetical protein	H9A123	Staphylococcus_phage	1.8e-20	100.0
WP_101750513.1\|640080_641010_+	DUF2726 domain-containing protein	A0A172JI52	Bacillus_phage	8.8e-41	34.1

DBSCAN-SWA_5

644971 : 654544

Staphylococcus_phage(70.0%)

holin,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002468177.1\|644971_645805_+\|tail	phage tail family protein	A0A2H4J498	uncultured_Caudovirales_phage	2.8e-163	100.0
WP_101750514.1\|645805_647374_+	peptidase	H9A128	Staphylococcus_phage	9.2e-301	98.7
WP_101750515.1\|647555_649418_+	DUF2817 domain-containing protein	A0A2H4J3L1	uncultured_Caudovirales_phage	0.0e+00	99.4
WP_101750516.1\|649417_650632_+\|plate	BppU family phage baseplate upper protein	A0A2H4JC27	uncultured_Caudovirales_phage	1.3e-222	98.0
WP_032604283.1\|650636_651260_+	poly-gamma-glutamate hydrolase family protein	A0A0N9SKG5	Staphylococcus_phage	2.9e-117	100.0
WP_002499223.1\|651256_651682_+	hypothetical protein	A0A0N9S016	Staphylococcus_phage	4.0e-73	100.0
WP_101750517.1\|651668_652076_+	hypothetical protein	A0A0N9STL6	Staphylococcus_phage	9.7e-69	99.3
WP_002499221.1\|652233_652632_+	YxeA family protein	A0A0N7GFH8	Staphylococcus_phage	7.5e-66	100.0
WP_002499220.1\|652695_653106_+\|holin	phage holin	A0A0N9SI57	Staphylococcus_phage	1.7e-68	100.0
WP_002499219.1\|653080_654544_+	CHAP domain-containing protein	A0A0N9SKE2	Staphylococcus_phage	1.0e-298	100.0

DBSCAN-SWA_6

685971 : 694441

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001831735.1\|685971_686454_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.2e-21	43.3
WP_001831674.1\|686440_687568_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_001831723.1\|687568_688273_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	H8ZMN3	Synechococcus_phage	1.6e-47	42.5
WP_001831728.1\|688272_688533_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_001831727.1\|688534_689206_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_001831715.1\|689198_691388_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	8.7e-140	40.4
WP_001831721.1\|691366_692851_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.4e-45	31.9
WP_002504799.1\|692843_693875_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.8e-64	43.4
WP_001831672.1\|693874_694441_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.0

DBSCAN-SWA_7

1402882 : 1451105

Staphylococcus_phage(81.25%)

integrase,transposase,tRNA

attL 1420860:1420876|attR 1456889:1456905

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002484464.1\|1402882_1413961_-	YSIRK signal domain/LPXTG anchor domain surface protein	A0A2H4PQU6	Staphylococcus_phage	3.2e-28	26.2
WP_001830891.1\|1414365_1414677_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.1e-35	71.8
WP_002497663.1\|1414702_1417117_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	87.3
WP_001830884.1\|1417408_1418623_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	4.6e-183	83.7
WP_001830802.1\|1418729_1419683_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	3.3e-67	84.7
WP_001830894.1\|1419679_1420243_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	1.9e-67	66.5
WP_002484465.1\|1420464_1420881_-	MarR family transcriptional regulator	NA	NA	NA	NA
1420860:1420876	attL	NA	NA	NA	NA
WP_002484455.1\|1421370_1422198_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_002484452.1\|1422440_1423442_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.8e-131	69.7
WP_002456446.1\|1423699_1424161_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-59	84.2
WP_002504857.1\|1424173_1425355_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	9.7e-178	75.6
WP_002467848.1\|1425367_1426000_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-87	77.6
WP_002494782.1\|1426006_1427050_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	8.9e-135	66.8
WP_011082717.1\|1427485_1428979_-	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.5e-13	65.6
WP_001830727.1\|1429317_1430169_-	autolysin	A0A1J0MFB0	Staphylococcus_phage	1.0e-32	35.6
WP_002456441.1\|1430546_1430762_-	hypothetical protein	NA	NA	NA	NA
WP_010959195.1\|1430794_1430914_+	hypothetical protein	NA	NA	NA	NA
WP_002484457.1\|1430969_1431449_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	9.1e-26	42.9
WP_001830734.1\|1431454_1431898_+	competence protein ComK	NA	NA	NA	NA
WP_002467846.1\|1431884_1432328_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	4.1e-20	43.5
WP_002484454.1\|1432467_1433181_-	transaldolase	M1PR54	Cyanophage	7.0e-22	37.4
WP_002446728.1\|1433457_1433766_+	hypothetical protein	NA	NA	NA	NA
WP_001830726.1\|1433802_1434168_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.1e-34	57.0
WP_002484462.1\|1434164_1434518_+	CrcB family protein	NA	NA	NA	NA
WP_104832471.1\|1434996_1436175_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	3.7e-60	37.0
WP_002469577.1\|1436404_1436560_-	hypothetical protein	A0A146ICT8	Staphylococcus_phage	5.2e-15	79.6
WP_002456435.1\|1436844_1437681_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.1e-110	68.6
WP_002456434.1\|1437860_1438769_-	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	1.8e-102	80.6
WP_001829830.1\|1438871_1440071_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.1e-192	85.4
WP_002469572.1\|1440440_1442033_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	1.6e-268	83.6
WP_002456431.1\|1442263_1443049_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.0e-99	71.3
WP_010959198.1\|1443035_1443512_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.3e-44	58.1
WP_001829824.1\|1443570_1443822_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.9e-35	81.9
WP_001829851.1\|1443818_1444820_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	6.9e-92	50.2
WP_002456429.1\|1444809_1446234_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.6e-173	63.9
WP_002456428.1\|1447243_1447390_+	hypothetical protein	NA	NA	NA	NA
WP_002456427.1\|1447484_1448150_+	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	7.0e-08	41.8
WP_002456426.1\|1448311_1448599_+	hypothetical protein	A0A2H4JGN1	uncultured_Caudovirales_phage	5.5e-18	50.0
WP_002456425.1\|1448888_1449044_+	hypothetical protein	NA	NA	NA	NA
WP_002456424.1\|1449125_1449860_+	hypothetical protein	NA	NA	NA	NA
WP_002456423.1\|1450239_1450452_-	hypothetical protein	A0A2H4JCA1	uncultured_Caudovirales_phage	7.3e-20	72.9
WP_002456422.1\|1450610_1451105_+\|integrase	site-specific integrase	B7T092	Staphylococcus_virus	3.8e-67	76.1
1456889:1456905	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1488438 : 1560818

Staphylococcus_phage(28.57%)

protease,tail,tRNA,holin,integrase,capsid,head,portal,terminase

attL 1490377:1490436|attR 1562026:1562107

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011082735.1\|1488438_1489518_+\|integrase	site-specific integrase	A0A1J0MFS3	Staphylococcus_phage	1.6e-70	42.1
1490377:1490436	attL	NA	NA	NA	NA
WP_002456357.1\|1490766_1491321_-	serine hydrolase family protein	NA	NA	NA	NA
WP_002456356.1\|1491456_1492905_-	protoporphyrinogen oxidase	NA	NA	NA	NA
WP_001829846.1\|1492997_1493921_-	ferrochelatase	NA	NA	NA	NA
WP_023567503.1\|1493997_1495077_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_001829811.1\|1495351_1495855_+	signal transduction protein TraP	NA	NA	NA	NA
WP_001829861.1\|1496416_1497034_-	CadD family cadmium resistance transporter	NA	NA	NA	NA
WP_002456354.1\|1497092_1498316_-	ABC transporter permease	NA	NA	NA	NA
WP_001829855.1\|1498308_1499049_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.0e-25	28.4
WP_001829828.1\|1499178_1499604_+	HIT family protein	NA	NA	NA	NA
WP_002456353.1\|1499680_1500052_+	YtxH domain-containing protein	NA	NA	NA	NA
WP_001829837.1\|1500217_1500778_+	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_002456352.1\|1500979_1501957_+	foldase	NA	NA	NA	NA
WP_002440288.1\|1502106_1502211_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_002456351.1\|1502382_1503324_-	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
WP_002456350.1\|1503320_1506260_-	AAA family ATPase	NA	NA	NA	NA
WP_001829843.1\|1506249_1507446_-	DNA repair exonuclease	NA	NA	NA	NA
WP_001829805.1\|1507716_1508061_-	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	5.8e-06	30.6
WP_101750543.1\|1508133_1509264_-	DUF445 domain-containing protein	NA	NA	NA	NA
WP_001829807.1\|1509445_1509910_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001829810.1\|1510180_1510804_-	response regulator transcription factor	A0A1V0SGR9	Hokovirus	5.2e-05	28.2
WP_001829819.1\|1510796_1511930_-	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_001829804.1\|1512088_1512913_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_001829862.1\|1513273_1514659_-	class II fumarate hydratase	NA	NA	NA	NA
WP_001829818.1\|1514843_1515248_-	hypothetical protein	NA	NA	NA	NA
WP_002468490.1\|1515403_1515583_-	hypothetical protein	NA	NA	NA	NA
WP_002456349.1\|1515606_1516206_-	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
WP_001829836.1\|1516363_1516834_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_002440297.1\|1516830_1517973_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_001829854.1\|1518170_1518326_-	hypothetical protein	A0A146ICT8	Staphylococcus_phage	2.2e-13	75.0
WP_002470779.1\|1518822_1519551_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-34	41.5
WP_002440300.1\|1519537_1520995_-	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_002456347.1\|1521233_1522292_-	PTS transporter subunit IIC	NA	NA	NA	NA
WP_001829860.1\|1522517_1523366_-\|protease	serine protease	A0A2H4PQN3	Staphylococcus_phage	3.5e-20	31.9
WP_002484587.1\|1523817_1524135_-	hypothetical protein	NA	NA	NA	NA
WP_002484578.1\|1525194_1526112_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JNM6	Staphylococcus_phage	4.9e-68	63.4
WP_002484580.1\|1526165_1526552_-\|holin	phage holin family protein	D7RWK5	Brochothrix_phage	9.3e-13	33.9
WP_002484582.1\|1526553_1526835_-	hypothetical protein	NA	NA	NA	NA
WP_002484576.1\|1526869_1527280_-	hypothetical protein	A0A1I9KKA6	Lactobacillus_phage	4.3e-08	31.3
WP_002484585.1\|1527300_1530756_-	hypothetical protein	M1PRQ3	Streptococcus_phage	1.7e-20	24.0
WP_002484577.1\|1530752_1531523_-	hypothetical protein	NA	NA	NA	NA
WP_002504620.1\|1531525_1535707_-\|tail	phage tail tape measure protein	A0A2P0ZLF1	Lactobacillus_phage	1.9e-63	42.6
WP_002446778.1\|1535770_1535983_-	hypothetical protein	NA	NA	NA	NA
WP_002446779.1\|1536030_1536381_-	hypothetical protein	NA	NA	NA	NA
WP_002484613.1\|1536404_1537109_-	hypothetical protein	NA	NA	NA	NA
WP_002484584.1\|1537114_1537552_-	hypothetical protein	NA	NA	NA	NA
WP_002446782.1\|1537551_1537890_-	hypothetical protein	NA	NA	NA	NA
WP_002446783.1\|1537889_1538219_-\|head	phage head closure protein	NA	NA	NA	NA
WP_002484579.1\|1538190_1538499_-	hypothetical protein	A0A2H4JF26	uncultured_Caudovirales_phage	1.5e-10	39.1
WP_002484575.1\|1538526_1539684_-\|capsid	phage major capsid protein	A0A0U4JIF4	Bacillus_phage	2.2e-97	51.7
WP_002484598.1\|1539708_1540455_-\|protease	Clp protease ClpP	A0A2H4J8Y7	uncultured_Caudovirales_phage	6.4e-42	47.4
WP_002484608.1\|1540454_1541591_-\|portal	phage portal protein	A0A0U4IIQ9	Bacillus_phage	4.0e-88	43.8
WP_002484595.1\|1541606_1543241_-\|terminase	terminase large subunit	A0A0U4B089	Bacillus_phage	1.8e-182	56.6
WP_002491654.1\|1543224_1543563_-	hypothetical protein	D2XR14	Bacillus_phage	5.8e-11	39.4
WP_002446790.1\|1543885_1544176_-	HNH endonuclease	D2XR61	Bacillus_phage	3.2e-18	42.2
WP_002484574.1\|1544457_1545075_-	hypothetical protein	NA	NA	NA	NA
WP_002484607.1\|1545278_1545770_-	DNA-directed RNA polymerase sigma-70 factor	S5MAA9	Brevibacillus_phage	2.6e-07	28.0
WP_002484601.1\|1546093_1547968_-	DNA primase	A0A1B1P7L5	Bacillus_phage	1.2e-211	58.0
WP_002484603.1\|1547997_1548192_-	hypothetical protein	NA	NA	NA	NA
WP_002484606.1\|1548269_1548515_-	hypothetical protein	NA	NA	NA	NA
WP_002484581.1\|1548582_1549050_+	hypothetical protein	A0A1W6JPR4	Staphylococcus_phage	3.5e-22	41.5
WP_002484596.1\|1549077_1549398_-	phosphoribosyl-ATP diphosphatase	A0A2H4J2H9	uncultured_Caudovirales_phage	4.6e-42	81.6
WP_002484605.1\|1549462_1550194_-	hypothetical protein	H9A0T0	Staphylococcus_phage	5.4e-62	49.2
WP_002484612.1\|1550200_1550419_-	DUF3310 domain-containing protein	Q4ZC12	Staphylococcus_virus	1.9e-26	78.6
WP_002484590.1\|1550449_1550800_-	transcriptional regulator	A0A2H4IYG5	uncultured_Caudovirales_phage	4.8e-16	38.8
WP_101750544.1\|1550813_1552532_-	hypothetical protein	A0A1B1P7M5	Bacillus_phage	8.5e-207	63.3
WP_002484600.1\|1552581_1553064_-	DUF669 domain-containing protein	A0A2H4J1S8	uncultured_Caudovirales_phage	8.9e-21	38.4
WP_002484592.1\|1553115_1553322_-	hypothetical protein	NA	NA	NA	NA
WP_002495697.1\|1553340_1555152_-	AAA family ATPase	A0A1B1P7N0	Bacillus_phage	1.1e-164	57.4
WP_002484599.1\|1555151_1555448_-	hypothetical protein	A0A1B1P7M6	Bacillus_phage	3.6e-25	58.2
WP_002484586.1\|1555440_1555758_-	hypothetical protein	A0A2P0ZLA7	Lactobacillus_phage	3.7e-23	46.5
WP_002446807.1\|1555760_1557002_-	DEAD/DEAH box helicase family protein	A0A1B1P7L4	Bacillus_phage	6.9e-134	57.2
WP_002446808.1\|1557149_1557344_-	hypothetical protein	NA	NA	NA	NA
WP_002446809.1\|1557359_1557683_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_002446810.1\|1557736_1557928_-	helix-turn-helix transcriptional regulator	A0A2I6PEL6	Staphylococcus_phage	3.1e-17	66.7
WP_002446811.1\|1558088_1558424_+	helix-turn-helix transcriptional regulator	A0A2I6PEN2	Staphylococcus_phage	1.4e-28	58.9
WP_002446812.1\|1558579_1558954_+	hypothetical protein	NA	NA	NA	NA
WP_012088039.1\|1558994_1559726_+	hypothetical protein	NA	NA	NA	NA
WP_101750545.1\|1559771_1560818_+\|integrase	tyrosine-type recombinase/integrase	A0A1J0MFS3	Staphylococcus_phage	1.7e-53	36.5
1562026:1562107	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1636149 : 1670980

uncultured_Caudovirales_phage(45.45%)

coat,integrase,transposase,terminase

attL 1652454:1652472|attR 1669020:1669038

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000410574.1\|1636149_1636515_-\|transposase	transposase	NA	NA	NA	NA
WP_001799177.1\|1636523_1638551_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011082751.1\|1638589_1639741_-\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	1.8e-11	31.6
WP_001830431.1\|1640402_1640573_-	hypothetical protein	NA	NA	NA	NA
WP_001830433.1\|1640954_1641995_+	choloylglycine hydrolase	NA	NA	NA	NA
WP_101750548.1\|1642048_1642885_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001830393.1\|1642881_1643439_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_002440403.1\|1643491_1644037_-	hypothetical protein	NA	NA	NA	NA
WP_001830379.1\|1644767_1645499_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_001830444.1\|1645498_1646371_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	1.7e-25	34.3
WP_002494112.1\|1646391_1647051_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_001830432.1\|1647031_1647946_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	W6JKT0	Anomala_cuprea_entomopoxvirus	2.1e-18	30.7
WP_001830364.1\|1647945_1648323_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001832481.1\|1648639_1648810_-	hypothetical protein	NA	NA	NA	NA
WP_002495543.1\|1649286_1650573_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001830441.1\|1651003_1652035_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
1652454:1652472	attL	NA	NA	NA	NA
WP_101750549.1\|1652845_1653679_-	hypothetical protein	NA	NA	NA	NA
WP_049315915.1\|1654236_1654827_-	hypothetical protein	A0A1Q1PW40	Staphylococcus_phage	1.0e-10	27.6
WP_101750550.1\|1654831_1655722_-	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_032604672.1\|1656974_1657301_-	DNA-directed RNA polymerase sigma-70 factor	A0A2H4JB14	uncultured_Caudovirales_phage	1.7e-52	94.4
WP_101750551.1\|1657297_1657615_-	hypothetical protein	A0A2H4JEA5	uncultured_Caudovirales_phage	2.7e-50	94.3
WP_101750552.1\|1657611_1658145_-\|coat	spore coat protein	A0A2H4JB26	uncultured_Caudovirales_phage	9.3e-88	92.1
WP_002467963.1\|1658205_1658679_-\|terminase	phage terminase small subunit P27 family	A0A2H4JB21	uncultured_Caudovirales_phage	8.3e-80	96.8
WP_012085738.1\|1660082_1660538_-	hypothetical protein	NA	NA	NA	NA
WP_012085736.1\|1660550_1661189_-	hypothetical protein	A0A2H4JFF8	uncultured_Caudovirales_phage	1.2e-73	68.9
WP_049401765.1\|1661148_1661358_-	hypothetical protein	NA	NA	NA	NA
WP_049401766.1\|1661370_1661838_-	hypothetical protein	NA	NA	NA	NA
WP_101750553.1\|1661837_1662113_-	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	2.4e-31	71.1
WP_049401768.1\|1662099_1662903_-	DNA primase	A0A1W6JPC1	Staphylococcus_phage	7.9e-123	77.9
WP_049401769.1\|1663068_1664676_-	hypothetical protein	A0A1W6JPF4	Staphylococcus_phage	7.8e-239	76.7
WP_046026417.1\|1664734_1665031_-	DUF1474 family protein	A0A1W6JPG5	Staphylococcus_phage	2.3e-35	75.5
WP_049401770.1\|1665030_1665378_-	hypothetical protein	A0A2H4JB24	uncultured_Caudovirales_phage	4.0e-39	88.4
WP_049401771.1\|1665379_1665583_-	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	8.9e-23	76.6
WP_049401772.1\|1665722_1666043_-	helix-turn-helix domain-containing protein	A0A2H4JE99	uncultured_Caudovirales_phage	7.9e-50	95.3
WP_032603590.1\|1666056_1666698_-	Bro-N domain-containing protein	A0A2H4JB17	uncultured_Caudovirales_phage	6.3e-107	92.0
WP_032603591.1\|1666701_1666920_-	helix-turn-helix transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	1.4e-29	93.1
WP_032603593.1\|1667089_1667722_+	helix-turn-helix domain-containing protein	Q4ZE79	Staphylococcus_phage	5.4e-10	28.1
WP_032603595.1\|1667730_1668906_+\|integrase	site-specific integrase	A0A2H4JFF0	uncultured_Caudovirales_phage	1.4e-216	96.4
WP_001830447.1\|1669020_1670640_-	chaperonin GroEL	A0A240F779	uncultured_virus	4.4e-157	54.0
1669020:1669038	attR	NA	NA	NA	NA
WP_001830378.1\|1670695_1670980_-	co-chaperone GroES	A0A221S386	uncultured_virus	1.5e-12	43.0

DBSCAN-SWA_10

1681825 : 1808295

141

Staphylococcus_phage(97.86%)

tail,holin,transposase,integrase,terminase

attL 1729145:1729161|attR 1778742:1778758

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002477475.1\|1681825_1683076_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	9.7e-35	29.7
WP_002469006.1\|1683509_1683734_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_001260014.1\|1684615_1686154_-	recombinase family protein	A0A0N9RZT8	Staphylococcus_phage	5.3e-277	100.0
WP_002504503.1\|1686143_1686725_-	DNA-binding protein	A0A0N9SK69	Staphylococcus_phage	3.8e-103	100.0
WP_001130902.1\|1686926_1687520_-	RusA family crossover junction endodeoxyribonuclease	A0A0N7GFG7	Staphylococcus_phage	7.9e-112	100.0
WP_002504504.1\|1687503_1687899_-	hypothetical protein	A0A0N9RRM7	Staphylococcus_phage	5.1e-67	100.0
WP_002504505.1\|1687900_1688647_-	NTP pyrophosphohydrolase	A0A0N9SIY2	Staphylococcus_phage	5.6e-139	100.0
WP_002504506.1\|1688659_1688899_-	hypothetical protein	A0A0N9S8B1	Staphylococcus_phage	6.7e-38	100.0
WP_002504507.1\|1688914_1689163_-	thioredoxin family protein	A0A0N9SGY3	Staphylococcus_phage	1.8e-41	100.0
WP_002504508.1\|1689203_1689806_-	AAA family ATPase	A0A0N9RTZ3	Staphylococcus_phage	4.0e-111	100.0
WP_002504509.1\|1689833_1690856_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N9SK77	Staphylococcus_phage	1.1e-198	100.0
WP_071813268.1\|1690901_1691258_-	ribonucleoside-diphosphate reductase	A0A2H4J2N6	uncultured_Caudovirales_phage	5.9e-38	60.2
WP_002504510.1\|1691448_1692273_-	HNH endonuclease	A0A0N9SHZ0	Staphylococcus_phage	2.7e-158	100.0
WP_044555413.1\|1692426_1695303_-	hypothetical protein	A0A0N7GFG8	Staphylococcus_phage	0.0e+00	100.0
WP_002504512.1\|1695357_1695804_-	hypothetical protein	A0A0N9STF9	Staphylococcus_phage	4.0e-76	100.0
WP_002504513.1\|1695803_1696217_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A0N9RZU5	Staphylococcus_phage	1.8e-70	99.3
WP_002504515.1\|1696417_1697119_-	hypothetical protein	A0A0N9RRN5	Staphylococcus_phage	4.2e-128	99.6
WP_002504516.1\|1697130_1697640_-	siphovirus Gp157 family protein	A0A0N9SIY9	Staphylococcus_phage	2.1e-84	100.0
WP_002504517.1\|1697765_1698362_-	hypothetical protein	A0A0N9S8C0	Staphylococcus_phage	1.9e-57	92.1
WP_000824898.1\|1698361_1698592_-	hypothetical protein	A0A0N9SGZ7	Staphylococcus_phage	1.8e-32	100.0
WP_000356944.1\|1698605_1698788_-	hypothetical protein	A0A0N7GFG9	Staphylococcus_phage	3.1e-27	100.0
WP_000792728.1\|1698790_1699144_-	hypothetical protein	A0A0N9RU04	Staphylococcus_phage	1.2e-59	100.0
WP_000598581.1\|1699176_1700175_-	DNA cytosine methyltransferase	A0A0N9SK84	Staphylococcus_phage	3.7e-194	100.0
WP_002504519.1\|1700189_1700876_-	methyltransferase domain-containing protein	A0A0N9SHZ9	Staphylococcus_phage	5.9e-127	100.0
WP_002504520.1\|1700865_1701057_-	hypothetical protein	A0A0N9STH2	Staphylococcus_phage	1.0e-33	100.0
WP_002504521.1\|1701049_1701661_-	nucleoside 2-deoxyribosyltransferase	A0A0N9RZV9	Staphylococcus_phage	2.8e-112	100.0
WP_002504522.1\|1701675_1701858_-	hypothetical protein	A0A0N9SKA8	Staphylococcus_phage	1.4e-27	100.0
WP_000865652.1\|1701857_1702109_-	hypothetical protein	A0A0N9RRP5	Staphylococcus_phage	3.8e-39	100.0
WP_002504524.1\|1702114_1702438_-	hypothetical protein	A0A0N7GFH0	Staphylococcus_phage	8.2e-55	100.0
WP_002504525.1\|1702418_1702706_-	hypothetical protein	A0A0N9SIZ8	Staphylococcus_phage	4.4e-44	100.0
WP_002504526.1\|1702698_1702965_-	hypothetical protein	A0A0N9S8D1	Staphylococcus_phage	2.9e-42	100.0
WP_002504527.1\|1703263_1703653_-	hypothetical protein	A0A0N9RU12	Staphylococcus_phage	1.1e-50	100.0
WP_010959221.1\|1703740_1705039_-	ATP-dependent DNA ligase	A0A0N9SK95	Staphylococcus_phage	1.3e-244	100.0
WP_002504529.1\|1705048_1705363_-	hypothetical protein	A0A0N9SI08	Staphylococcus_phage	5.4e-51	100.0
WP_002504530.1\|1705500_1705881_-	hypothetical protein	A0A0N9STI1	Staphylococcus_phage	4.2e-50	99.2
WP_002504531.1\|1705992_1708479_-	hypothetical protein	A0A0N7GFH1	Staphylococcus_phage	0.0e+00	100.0
WP_010959223.1\|1708941_1710390_-	PHP domain-containing protein	A0A0N9SKC7	Staphylococcus_phage	1.5e-281	100.0
WP_002504533.1\|1710402_1710777_-	hypothetical protein	A0A0N9RRQ3	Staphylococcus_phage	7.3e-63	100.0
WP_002504534.1\|1710943_1711504_+	hypothetical protein	A0A0N9SJ02	Staphylococcus_phage	4.3e-67	100.0
WP_002504535.1\|1711856_1712261_+	YolD-like family protein	A0A0N9S8D9	Staphylococcus_phage	1.5e-74	100.0
WP_002504537.1\|1712508_1713150_-	hypothetical protein	A0A0N9RU21	Staphylococcus_phage	2.6e-60	100.0
WP_002504538.1\|1713255_1713978_-	hypothetical protein	A0A0N7GFH2	Staphylococcus_phage	2.5e-91	100.0
WP_000686449.1\|1714086_1714887_-	serine/threonine protein phosphatase	A0A0N9SKA2	Staphylococcus_phage	4.0e-151	100.0
WP_010959224.1\|1714890_1715385_-	hypothetical protein	A0A0N9SI15	Staphylococcus_phage	6.2e-86	100.0
WP_000755772.1\|1715441_1715711_-	hypothetical protein	A0A0N9STI7	Staphylococcus_phage	6.9e-39	100.0
WP_002504556.1\|1715694_1715886_-	hypothetical protein	A0A0N9RZX7	Staphylococcus_phage	3.9e-20	88.9
WP_002504557.1\|1716188_1716584_-	type II toxin-antitoxin system death-on-curing family toxin	A0A0N9SKD8	Staphylococcus_phage	1.0e-67	100.0
WP_002504558.1\|1716583_1716814_-	addiction module antitoxin	A0A0N9RRQ9	Staphylococcus_phage	1.7e-33	100.0
WP_002504559.1\|1716976_1717495_-	hypothetical protein	A0A0N9SJ06	Staphylococcus_phage	2.8e-97	99.4
WP_002504560.1\|1717494_1718145_-	hypothetical protein	A0A0N7GFH3	Staphylococcus_phage	3.1e-117	100.0
WP_002504561.1\|1718144_1718462_-	hypothetical protein	A0A0N9S8E9	Staphylococcus_phage	3.7e-52	100.0
WP_002504562.1\|1718454_1719180_-	serine/threonine protein phosphatase	A0A0N9SH20	Staphylococcus_phage	1.2e-138	99.6
WP_002504563.1\|1719179_1719401_-	hypothetical protein	A0A0N9RU28	Staphylococcus_phage	1.3e-35	100.0
WP_101750554.1\|1719589_1720132_-	hypothetical protein	A0A0N9SI25	Staphylococcus_phage	1.0e-97	99.4
WP_002504566.1\|1720147_1720420_-	hypothetical protein	A0A0N9STJ5	Staphylococcus_phage	2.7e-43	100.0
WP_002504567.1\|1720445_1720601_-	transcriptional regulator	A0A0N9RZY5	Staphylococcus_phage	1.7e-18	100.0
WP_002504568.1\|1720597_1720882_-	hypothetical protein	A0A0N7GFH4	Staphylococcus_phage	5.0e-48	100.0
WP_001187008.1\|1720897_1721083_-	hypothetical protein	A0A0N9SKE7	Staphylococcus_phage	1.5e-24	100.0
WP_002504569.1\|1721067_1721247_-	hypothetical protein	A0A0N9RRR6	Staphylococcus_phage	2.1e-23	100.0
WP_002504570.1\|1721262_1721745_-	hypothetical protein	A0A0N9SJ15	Staphylococcus_phage	3.4e-73	100.0
WP_002504571.1\|1721746_1721935_-	hypothetical protein	A0A0N9S8F9	Staphylococcus_phage	8.2e-31	100.0
WP_002504572.1\|1721941_1722145_-	hypothetical protein	A0A0N9SH33	Staphylococcus_phage	5.7e-30	100.0
WP_002504573.1\|1722149_1722416_-	hypothetical protein	A0A0N9RU37	Staphylococcus_phage	1.0e-42	100.0
WP_002504574.1\|1722437_1722713_-	hypothetical protein	A0A0N9SKC5	Staphylococcus_phage	4.5e-46	100.0
WP_002504575.1\|1722735_1722975_-	hypothetical protein	A0A0N7GFH5	Staphylococcus_phage	1.7e-36	100.0
WP_000359469.1\|1722996_1723221_-	hypothetical protein	A0A0N9SI40	Staphylococcus_phage	2.0e-31	100.0
WP_000862563.1\|1723226_1723574_-	nuclease	A0A0N9STK3	Staphylococcus_phage	4.4e-62	100.0
WP_002504576.1\|1723570_1723981_-	hypothetical protein	A0A0N9RZZ6	Staphylococcus_phage	7.0e-75	100.0
WP_000312937.1\|1724020_1724284_-	hypothetical protein	A0A0N9SKF2	Staphylococcus_phage	6.9e-44	100.0
WP_002504577.1\|1724286_1724595_-	hypothetical protein	A0A0N9RRS4	Staphylococcus_phage	5.8e-50	100.0
WP_002504579.1\|1724886_1725162_-	hypothetical protein	A0A0N7GFH6	Staphylococcus_phage	5.0e-45	100.0
WP_002504580.1\|1725174_1725372_-	hypothetical protein	A0A0N9SH39	Staphylococcus_phage	4.0e-28	100.0
WP_002504581.1\|1725382_1726429_-	hypothetical protein	A0A0N9RU46	Staphylococcus_phage	4.8e-197	100.0
WP_001106022.1\|1726472_1727147_+\|transposase	IS6-like element IS257 family transposase	A0A0N9SKD3	Staphylococcus_phage	6.2e-129	100.0
WP_001118605.1\|1727178_1727601_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.0e-68	100.0
WP_000195429.1\|1727725_1728898_+\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
WP_001028144.1\|1729027_1730467_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	A0A1X9I6C2	Streptococcus_phage	3.8e-285	100.0
1729145:1729161	attL	NA	NA	NA	NA
WP_000393259.1\|1730467_1730860_-	GNAT family N-acetyltransferase	A0A0N7GFH7	Staphylococcus_phage	6.9e-72	100.0
WP_000195429.1\|1730916_1732089_-\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
WP_042742622.1\|1732166_1732670_-	trimethoprim-resistant dihydrofolate reductase DfrC	A0A0N9S8H6	Staphylococcus_phage	3.2e-90	100.0
WP_000282655.1\|1732711_1733668_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.1e-190	100.0
WP_001106019.1\|1733781_1734456_+\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	8.1e-129	100.0
WP_010959235.1\|1735077_1736844_-	single-stranded DNA-binding protein	A0A0N9SK20	Staphylococcus_phage	0.0e+00	100.0
WP_002504675.1\|1736846_1737959_-	hypothetical protein	A0A0N9RRG7	Staphylococcus_phage	2.8e-219	100.0
WP_002504676.1\|1737975_1739508_-	helicase DnaB	A0A0N9SIU7	Staphylococcus_phage	5.6e-295	100.0
WP_002504677.1\|1739529_1740048_-	hypothetical protein	A0A0N9S850	Staphylococcus_phage	2.1e-92	100.0
WP_002504678.1\|1740124_1741093_-	ATP-binding protein	A0A0N9SGS5	Staphylococcus_phage	5.3e-182	100.0
WP_000852323.1\|1741216_1742176_-	hypothetical protein	A0A0N7GFF9	Staphylococcus_phage	6.7e-169	100.0
WP_000668931.1\|1742219_1742900_-	hypothetical protein	A0A0N9RTS7	Staphylococcus_phage	2.0e-127	100.0
WP_002504679.1\|1742917_1743406_-	hypothetical protein	A0A0N9SK25	Staphylococcus_phage	8.1e-54	100.0
WP_101750555.1\|1743421_1743670_-	hypothetical protein	A0A0N9SHT9	Staphylococcus_phage	9.8e-40	98.8
WP_002504681.1\|1743829_1744834_-	hypothetical protein	A0A0N9ST56	Staphylococcus_phage	3.1e-185	100.0
WP_002504682.1\|1744845_1746126_-	hypothetical protein	A0A0N9RZM2	Staphylococcus_phage	6.5e-236	100.0
WP_002504683.1\|1746436_1747480_-\|integrase	site-specific integrase	A0A0N9SK33	Staphylococcus_phage	3.8e-194	100.0
WP_002504685.1\|1748163_1748592_-	hypothetical protein	A0A0N9RRH5	Staphylococcus_phage	5.0e-76	100.0
WP_012099556.1\|1748669_1749191_-	hypothetical protein	A0A0N7GFG0	Staphylococcus_phage	5.2e-91	100.0
WP_010959239.1\|1749190_1749643_-	hypothetical protein	A0A0N9SIV3	Staphylococcus_phage	6.7e-79	100.0
WP_010959240.1\|1749758_1750439_-	hypothetical protein	A0A0N9S858	Staphylococcus_phage	4.6e-124	100.0
WP_002504623.1\|1750467_1750731_-	hypothetical protein	A0A0N9SGT4	Staphylococcus_phage	3.4e-43	100.0
WP_002504624.1\|1750823_1751147_-	hypothetical protein	A0A0N9RTT7	Staphylococcus_phage	1.5e-56	100.0
WP_002504625.1\|1751190_1751850_-	antirestriction protein ArdA	A0A0N9SK30	Staphylococcus_phage	9.4e-122	100.0
WP_010959241.1\|1752002_1752392_-	hypothetical protein	A0A0N9SHU5	Staphylococcus_phage	3.9e-67	100.0
WP_010959242.1\|1752528_1752789_-	hypothetical protein	A0A0N9ST70	Staphylococcus_phage	7.1e-41	100.0
WP_002504552.1\|1752863_1753079_-	hypothetical protein	A0A0N7GFG1	Staphylococcus_phage	2.2e-35	100.0
WP_002504554.1\|1753258_1753543_-	hypothetical protein	A0A0N9SK40	Staphylococcus_phage	1.6e-46	100.0
WP_049391959.1\|1753598_1753796_-	hypothetical protein	A0A0N9RRI7	Staphylococcus_phage	3.0e-15	100.0
WP_002504834.1\|1755654_1756530_-	hypothetical protein	A0A0N9SIV7	Staphylococcus_phage	4.8e-166	100.0
WP_101750556.1\|1756565_1758851_-	AAA family ATPase	A0A0N9S864	Staphylococcus_phage	0.0e+00	99.9
WP_002504833.1\|1758986_1760483_+	hypothetical protein	A0A0N9SGU3	Staphylococcus_phage	2.3e-269	100.0
WP_002504832.1\|1760742_1761072_+	DNA-binding protein	A0A0N9RTU9	Staphylococcus_phage	1.7e-52	100.0
WP_000057341.1\|1761097_1761283_+	hypothetical protein	A0A0N7GFG2	Staphylococcus_phage	1.7e-25	100.0
WP_002504831.1\|1761291_1762476_+	hypothetical protein	A0A0N9SK37	Staphylococcus_phage	1.3e-222	100.0
WP_001007716.1\|1764170_1765055_+	hypothetical protein	A0A0N9SHV5	Staphylococcus_phage	4.5e-172	100.0
WP_101750557.1\|1765047_1766847_+\|terminase	terminase	A0A0N9RZP6	Staphylococcus_phage	1.5e-206	99.7
WP_000389594.1\|1766864_1768427_+	hypothetical protein	A0A0N9SK48	Staphylococcus_phage	6.6e-299	100.0
WP_002504829.1\|1768419_1769799_+	hypothetical protein	A0A0N9RRJ7	Staphylococcus_phage	2.0e-246	100.0
WP_002504828.1\|1769826_1770267_+	hypothetical protein	A0A0N9SIW4	Staphylococcus_phage	1.6e-77	100.0
WP_101750558.1\|1770305_1771307_+	hypothetical protein	A0A0N9S885	Staphylococcus_phage	2.1e-109	99.5
WP_000985467.1\|1771381_1771933_+	hypothetical protein	A0A0N9SGV3	Staphylococcus_phage	1.5e-80	100.0
WP_000134539.1\|1771950_1772385_+	hypothetical protein	A0A0N9RTW0	Staphylococcus_phage	3.5e-69	100.0
WP_042742626.1\|1772374_1772692_+	hypothetical protein	A0A0N9SK47	Staphylococcus_phage	7.5e-53	99.0
WP_000384369.1\|1772695_1773361_+	hypothetical protein	A0A0N9SHW2	Staphylococcus_phage	1.3e-123	100.0
WP_001177112.1\|1773350_1773872_+	hypothetical protein	A0A0N9ST98	Staphylococcus_phage	2.0e-95	100.0
WP_000391855.1\|1773877_1774750_+	hypothetical protein	A0A0N9RZR7	Staphylococcus_phage	1.5e-159	100.0
WP_002504825.1\|1774788_1775580_+	hypothetical protein	A0A0N7GFG4	Staphylococcus_phage	5.4e-140	100.0
WP_000700062.1\|1775663_1776221_+	hypothetical protein	A0A0N9SK55	Staphylococcus_phage	2.7e-98	100.0
WP_002504823.1\|1776220_1776694_+	hypothetical protein	A0A0N9RRK6	Staphylococcus_phage	3.5e-86	100.0
WP_002504822.1\|1776709_1777726_+\|integrase	site-specific integrase	A0A0N9SIX3	Staphylococcus_phage	2.3e-196	99.7
WP_002504821.1\|1777822_1786096_+\|tail	phage tail tape measure protein	A0A0N9S894	Staphylococcus_phage	0.0e+00	99.8
1778742:1778758	attR	NA	NA	NA	NA
WP_002504820.1\|1786117_1788199_+	hypothetical protein	A0A0N9SGW2	Staphylococcus_phage	0.0e+00	100.0
WP_002504819.1\|1788259_1796305_+	hypothetical protein	A0A0N9RTX0	Staphylococcus_phage	0.0e+00	100.0
WP_002504818.1\|1796307_1796682_+	hypothetical protein	A0A0N9SK58	Staphylococcus_phage	5.0e-64	100.0
WP_002504816.1\|1796883_1799553_+	hypothetical protein	A0A0N9SHX2	Staphylococcus_phage	0.0e+00	99.9
WP_002504815.1\|1799659_1800061_+	hypothetical protein	A0A0N9STA8	Staphylococcus_phage	4.4e-66	100.0
WP_002504814.1\|1800042_1800555_+	hypothetical protein	A0A0N9RZS7	Staphylococcus_phage	8.5e-46	100.0
WP_002504813.1\|1800576_1800906_+\|holin	phage holin	A0A0N9SK62	Staphylococcus_phage	4.2e-54	100.0
WP_002504812.1\|1800957_1803351_+	SGNH/GDSL hydrolase family protein	A0A0N9RRL9	Staphylococcus_phage	0.0e+00	100.0
WP_002504811.1\|1803427_1804930_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGX6	Staphylococcus_phage	3.4e-284	100.0
WP_002504810.1\|1805005_1805206_-	hypothetical protein	A0A0N9RTY2	Staphylococcus_phage	1.2e-27	100.0
WP_002504808.1\|1805900_1807547_-	hypothetical protein	A0A0N9SHY1	Staphylococcus_phage	0.0e+00	100.0
WP_002504807.1\|1807689_1808295_-	LPXTG cell wall anchor domain-containing protein	A0A0N9STB7	Staphylococcus_phage	3.8e-77	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013943

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection