CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP028780	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020046 plasmid p2_020046, complete sequence	0 crisprs	NA	0	0
NZ_CP028781	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020046 plasmid pNDM5_020046, complete sequence	0 crisprs	csa3,RT	0	2
NZ_CP028779	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020046 plasmid p1_020046, complete sequence	0 crisprs	NA	0	0
NZ_CP028783	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020046 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,RT,DinG,WYL	1	9
NZ_CP028782	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020046 plasmid pQnrB52_020046, complete sequence	0 crisprs	RT	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1727 : 66699

uncultured_Caudovirales_phage(26.32%)

protease,integrase,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001515717.1\|1727_2468_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_004152065.1\|3611_4559_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_071527918.1\|4585_4897_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004152067.1\|4961_5885_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.1e-175	98.4
WP_004197688.1\|6557_6815_-	hypothetical protein	NA	NA	NA	NA
WP_020444838.1\|7416_8871_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152070.1\|9853_11131_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_004152071.1\|11193_13197_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_085955172.1\|14230_15438_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178091.1\|16866_17298_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|17548_19024_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|19016_19697_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|19886_21272_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|21300_21654_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_004152079.1\|21767_23060_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_004098958.1\|23070_26217_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_102009024.1\|26303_26744_+	hypothetical protein	NA	NA	NA	NA
WP_004098955.1\|26870_29318_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000843497.1\|29358_29556_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|29589_30327_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|30615_31065_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|31298_33116_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|33115_34012_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|34051_34432_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|34436_35366_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|35420_36101_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004152084.1\|36097_37498_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_004152085.1\|37714_38149_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_004152086.1\|38380_38560_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_031944101.1\|40302_40812_+	major intrinsic protein MIP	NA	NA	NA	NA
WP_004152091.1\|40861_41359_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152092.1\|41690_42017_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_085903505.1\|42016_42727_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004182005.1\|42735_43281_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004152095.1\|43356_43719_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_004152096.1\|45615_46152_+	N-acetyltransferase	NA	NA	NA	NA
WP_004152097.1\|46184_46610_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152098.1\|46622_47912_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152099.1\|47959_49711_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152100.1\|49728_50091_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152101.1\|50140_50491_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152102.1\|50848_51118_+	hypothetical protein	NA	NA	NA	NA
WP_004152103.1\|51105_51681_+	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|51711_52206_+	DNA-binding protein	NA	NA	NA	NA
WP_004152105.1\|52249_52618_+	hypothetical protein	NA	NA	NA	NA
WP_004152106.1\|52651_52855_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152107.1\|52903_53161_+	hypothetical protein	NA	NA	NA	NA
WP_004152108.1\|53236_53491_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|53666_53933_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|53920_54403_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_020314316.1\|54614_55961_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004152113.1\|57803_58766_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_009483782.1\|58752_59502_-	diguanylate cyclase	NA	NA	NA	NA
WP_004152115.1\|59739_59937_-	hypothetical protein	NA	NA	NA	NA
WP_004152116.1\|59936_62732_-	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152117.1\|62846_63416_-	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152118.1\|63450_63732_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_000019473.1\|65718_66699_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1

DBSCAN-SWA_2

71485 : 125678

Escherichia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004153729.1\|71485_72313_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-20	37.6
WP_004217321.1\|73168_73873_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_044117068.1\|75176_75845_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.5
WP_000018329.1\|76034_76850_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_001067855.1\|77000_77705_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004199403.1\|77738_78095_-	hypothetical protein	A0A222YZE2	Escherichia_phage	5.5e-20	46.6
WP_001549892.1\|78097_78337_-	hypothetical protein	I6PD82	Cronobacter_phage	4.4e-21	55.1
WP_000343760.1\|78438_79659_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
WP_001549893.1\|79747_80410_-	recombinase family protein	M9Q1K0	Clostridium_phage	9.7e-10	29.1
WP_000516402.1\|80790_81453_+	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2
WP_001185481.1\|81552_81837_+	hypothetical protein	NA	NA	NA	NA
WP_000469598.1\|82042_82354_+	hypothetical protein	NA	NA	NA	NA
WP_001043731.1\|82389_82674_+	hypothetical protein	NA	NA	NA	NA
WP_000877224.1\|82694_83048_-	hypothetical protein	NA	NA	NA	NA
WP_001074369.1\|83235_83679_-	hypothetical protein	NA	NA	NA	NA
WP_001348704.1\|83687_84701_-	replication initiation protein	NA	NA	NA	NA
WP_001025390.1\|86053_86569_+	DnaJ domain-containing protein	A0A2K9L588	Tupanvirus	3.3e-05	39.8
WP_000792381.1\|86627_86864_+	hypothetical protein	NA	NA	NA	NA
WP_000662998.1\|86923_87475_+	hypothetical protein	NA	NA	NA	NA
WP_004208549.1\|87540_87753_+	hypothetical protein	NA	NA	NA	NA
WP_000008707.1\|87742_87985_+	hypothetical protein	NA	NA	NA	NA
WP_001099725.1\|88078_88417_+	hypothetical protein	NA	NA	NA	NA
WP_016197627.1\|88790_89006_-	hypothetical protein	NA	NA	NA	NA
WP_001348698.1\|89250_89796_+	hypothetical protein	NA	NA	NA	NA
WP_004199101.1\|89798_90959_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_000455437.1\|91311_91821_+	transcription termination factor NusG	NA	NA	NA	NA
WP_001348696.1\|91771_92008_+	hypothetical protein	NA	NA	NA	NA
WP_000953538.1\|92053_92698_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000916156.1\|92681_92972_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_015060057.1\|92996_95750_+	type IV secretion/conjugal transfer ATPase PilX3-PilX4	NA	NA	NA	NA
WP_000716326.1\|95759_96530_+	pilus assembly protein	NA	NA	NA	NA
WP_000759841.1\|96539_96797_+	EexN family lipoprotein	NA	NA	NA	NA
WP_000235886.1\|96808_97864_+	type IV secretion system protein	NA	NA	NA	NA
WP_004199085.1\|98058_98787_+	type IV secretion system protein	NA	NA	NA	NA
WP_000783386.1\|98792_99722_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_001295060.1\|99718_100933_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_000629109.1\|100934_101132_+	DNA-binding protein	NA	NA	NA	NA
WP_000650512.1\|101128_102163_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_004208539.1\|102159_104001_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_000738524.1\|103997_104390_+	hypothetical protein	NA	NA	NA	NA
WP_000754496.1\|104477_104792_+	hypothetical protein	NA	NA	NA	NA
WP_004208538.1\|104877_105204_+	hypothetical protein	NA	NA	NA	NA
WP_001215543.1\|105200_105695_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	8.0e-17	37.3
WP_000517490.1\|105777_107040_+	ATP-binding protein	A0A1V0SKF8	Klosneuvirus	1.3e-07	31.4
WP_004199098.1\|107043_109371_+	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	8.6e-37	28.1
WP_001293458.1\|109382_109838_+	H-NS histone family protein	NA	NA	NA	NA
WP_000351937.1\|109875_110526_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_023408316.1\|110798_110978_+	hypothetical protein	NA	NA	NA	NA
WP_000196235.1\|110974_111796_+	sprT domain-containing protein	NA	NA	NA	NA
WP_000510385.1\|111905_112160_+	hypothetical protein	NA	NA	NA	NA
WP_000557557.1\|112177_112453_+	hypothetical protein	NA	NA	NA	NA
WP_004221700.1\|112515_112728_+	hypothetical protein	NA	NA	NA	NA
WP_004221702.1\|112685_112871_+	hypothetical protein	NA	NA	NA	NA
WP_000124025.1\|117473_120461_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.4e-294	53.6
WP_000470623.1\|120628_121264_+	recombinase family protein	NA	NA	NA	NA
WP_047671991.1\|121291_122128_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_008813494.1\|122191_122590_-	VOC family protein	NA	NA	NA	NA
WP_000842086.1\|122631_123741_-	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	3.7e-30	28.1
WP_001141270.1\|123771_124047_-	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_023408311.1\|124676_125678_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.6e-51	38.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028783

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028783_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028783_1

4007925-4008020

Orphan

Consensus_repeat	Method
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028783_1

>merge|NZ_CP028783|1|4007925-4008020|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAACCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGTTGGCACTTTGTTGGCATTCTGTTGGCACAA

>NZ_CP028783|1|1|4007925-4008020|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGT
TGGCACTTTGTTGGCATTCTGTTGGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028783.1\|WP_004151303.1\|4010616_4010811_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028783.1\|WP_004151287.1\|4002403_4002574_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP028783.1\|WP_004151308.1\|4012718_4012877_+\|DUF1317-family-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP028783.1\|WP_102009029.1\|4005298_4005805_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028783.1\|WP_004151291.1\|4003529_4004177_-\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946
NZ_CP028783.1\|WP_004151300.1\|4009261_4009951_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP028783.1\|WP_004151285.1\|4001641_4001779_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP028783.1\|WP_004151288.1\|4002573_4003029_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP028783.1\|WP_004151295.1\|4005801_4006095_-\|protein-ren	unknown	unknown	gnl\|CDD\|238042
NZ_CP028783.1\|WP_004151304.1\|4010899_4011184_+\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP028783.1\|WP_004151310.1\|4012873_4013530_+\|DNA-methyltransferase	unknown	unknown	gnl\|CDD\|227069
NZ_CP028783.1\|WP_004151286.1\|4001775_4002411_-\|protein-ninG	unknown	unknown	gnl\|CDD\|368603
NZ_CP028783.1\|WP_004151299.1\|4008900_4009134_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP028783.1\|WP_001548453.1\|4008638_4008860_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP028783.1\|WP_004151290.1\|4003281_4003530_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028783.1\|WP_004151293.1\|4004349_4005192_-\|translation-repressor-RelE	unknown	unknown	gnl\|CDD\|379401
NZ_CP028783.1\|WP_004151301.1\|4010301_4010517_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028783.1\|WP_004151305.1\|4011199_4012045_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP028783.1\|WP_004151296.1\|4006094_4007525_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP028783.1\|WP_004151306.1\|4012041_4012722_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216

Protein	Function_ID	Function_description	E-value
NZ_CP028783.1\|WP_004151288.1\|4002573_4003029_-\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.50704e-78
NZ_CP028783.1\|WP_004151308.1\|4012718_4012877_+\|DUF1317-family-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	3.35548e-20
NZ_CP028783.1\|WP_004151291.1\|4003529_4004177_-\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	8.71432e-11
NZ_CP028783.1\|WP_004151300.1\|4009261_4009951_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.58097e-27
NZ_CP028783.1\|WP_004151287.1\|4002403_4002574_-\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.47696e-19
NZ_CP028783.1\|WP_004151295.1\|4005801_4006095_-\|protein-ren	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000668668
NZ_CP028783.1\|WP_004151310.1\|4012873_4013530_+\|DNA-methyltransferase	gnl\|CDD\|227069	COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription].	6.42213e-22
NZ_CP028783.1\|WP_004151286.1\|4001775_4002411_-\|protein-ninG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	9.44908e-60
NZ_CP028783.1\|WP_004151299.1\|4008900_4009134_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.32854e-22
NZ_CP028783.1\|WP_001548453.1\|4008638_4008860_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	1.55058e-09
NZ_CP028783.1\|WP_004151293.1\|4004349_4005192_-\|translation-repressor-RelE	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	0.000117969
NZ_CP028783.1\|WP_004151306.1\|4012041_4012722_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	1.68114e-32
NZ_CP028783.1\|WP_004151305.1\|4011199_4012045_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.75286e-34
NZ_CP028783.1\|WP_004151296.1\|4006094_4007525_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	7.87266e-159

>NZ_CP028783.1|WP_004151296.1|4006094_4007525_-|AAA-family-ATPase
MTSDFMTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYARPHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKILAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEQKPTKRGGF
>NZ_CP028783.1|WP_004151295.1|4005801_4006095_-|protein-ren
MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEIAGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NZ_CP028783.1|WP_102009029.1|4005298_4005805_-|hypothetical-protein
MTITLQAVNKLIASMESAGELSIREQKFLKLAKEFRICSASLDAAIKTGNMLADQNAQLAAENVALKDINAWCKTDAFKNMYREFKIAEALGCSDADCMHDAMLVAIMHAPATPATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGIALAADDFAKQLREGADK
>NZ_CP028783.1|WP_004151293.1|4004349_4005192_-|translation-repressor-RelE
MTDITELAQSLKAAAEKASNGDWVKESGDGWEACCSANDQANGGFIIAHFVGPDAAENCEFVQAANPANVLALVEALEYYKSREERVTSLVRDNSKSWDELYRQVEAKGKRNVELVEALESEKRICATWRKTAESTSEKLEKAQAAERRWHRVASRVHEQACESDVKIDELEAIRAAAEKLVRCKGRYHSEQNYRALAALFGVNTPDLPPLEHENVHYADAAEMEIEALRQRIAELESRTVKLPPRVDSSNVPFAGNAWNCCLDEVEKRLTAAGIKMEAE
>NZ_CP028783.1|WP_004151291.1|4003529_4004177_-|DUF551-domain-containing-protein
MTNNQLAENSVIQLLNSVKLARDNAELADNRVDHSFYYALTIALEELQERRKAAMDSEPVLWAWHHLDMWHVTSHDGRARDLWLSGFKVIPLYRHAQPVLVIPDEMTAEQAYEIGYYYGDPVDVFARGANWMRQHIIDSTLAAAPQSPGSDPATVPGKWISVSERMPENDGAYLCWDNRYVTTYAFIFGAWQANQFIAKNITHWMPLPAGPQEVR
>NZ_CP028783.1|WP_004151290.1|4003281_4003530_-|hypothetical-protein
MPRASTVGEIVRSDMVQSGALRKRYWQSSSLPFREKRKHRPQPCHFRRDRVLQKIMRREMEAMVNRLSKIDASKILEEVGDA
>NZ_CP028783.1|WP_004151288.1|4002573_4003029_-|hypothetical-protein
MNIPQCGIKLHNGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NZ_CP028783.1|WP_004151287.1|4002403_4002574_-|NinE-family-protein
MSSLLAKVIERGIFRVPARRKRKVEDKPSDIPTLKDYTARLVDKKWLRLRARRPHA
>NZ_CP028783.1|WP_004151286.1|4001775_4002411_-|protein-ninG
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRKARLAELRPNGYYKAQAQKAFNAYIRARDAALPCISCGETNPPDLHGGQWDCGHFKTVGAYPELRFEERNAHKQCKSCNAGAGKYTAKELTVAQQYEAGLVARYGQEYVDWLNGPHEMTNYRREDFIRIRDEYRAKLKALKQREAA
>NZ_CP028783.1|WP_004151285.1|4001641_4001779_-|YlcG-family-protein
MNHDIIERIRDRWKKLRLLRSRGTVLVDYLILRNFIASLSRGSYE
>NZ_CP028783.1|WP_001548453.1|4008638_4008860_-|hypothetical-protein
MESSTTRNKVEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAILISNRPGEKGDFEA
>NZ_CP028783.1|WP_004151299.1|4008900_4009134_-|helix-turn-helix-domain-containing-protein
MKNPAVEKAISIAGSQKELAKRCGKAQSTICDWLNGKKRISPVHVPDLVAAVNGEIKAYEFRPDLPSIFPPPNNSAA
>NZ_CP028783.1|WP_004151300.1|4009261_4009951_+|helix-turn-helix-transcriptional-regulator
MDFSERLARAMSLAGYTQGRLAKEVGMAQSSVNKLLNGANGSRKTVEIASVLGVRPEWLSTGAGEMLADSIQITQMQTPVTPQNGIYRVDVLDVKASAGPGALITNDFIETIRAIEYTSEQARSLFGNRPAHHIKVITVTGDSMDTTISPGDEIFVDISSTHFDSDGVYVFVFGKTLHVKRLQMQRDRLAVISDNPIYEKWYVEPGDEDQFYVMARVLLRQSIEYKRFA
>NZ_CP028783.1|WP_004151301.1|4010301_4010517_+|hypothetical-protein
MSKENNGGPAYPTQGYEGLTVRDYFAAKAMQGWLAGYPAGINHPARSEEGFTVAELSYLMADAMLKAREEV
>NZ_CP028783.1|WP_004151303.1|4010616_4010811_+|hypothetical-protein
MANSIPNNGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRSIEPNLVPAGTH
>NZ_CP028783.1|WP_004151304.1|4010899_4011184_+|host-nuclease-inhibitor-GamL
MNAYRAYDVIEERKWAEQTLTEEKQKWIEDRAKEVFDSLPEDPYAALRQSVSSKSFPYEGLRSDKAGEVYNDLRTAIAYAQAEYDWDHRTGCPF
>NZ_CP028783.1|WP_004151305.1|4011199_4012045_+|phage-recombination-protein-Bet
MANELVITASSLAERGIDGATWSALKNSIYPGAKDESVMMALDYCRARNLDPLLKPVHLVPMSVKDSKSGKSEWRDVVMPGIGLYRIQADRSGDYAGAKEPEFGPDVTLTLTGIEVTVPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATAGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSTPEAPPLVASEETLQAITDLLTSLNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP028783.1|WP_004151306.1|4012041_4012722_+|YqaJ-viral-recombinase-family-protein
MTPEIILERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNAKALAWGKQYEADARTLFEFTTDVKVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFISKMDESLAEIGFTFGEQWK
>NZ_CP028783.1|WP_004151308.1|4012718_4012877_+|DUF1317-family-protein
MKHYRDAITVGKVKCMYSVLHRGWLMPSGEVVRNPLKAQRLAEELDTKRGAR
>NZ_CP028783.1|WP_004151310.1|4012873_4013530_+|DNA-methyltransferase
MKRYSLIYADPAWSYGNTISNGAAVDHYPTMSLLDMKRLPVWELAADNAVLAMWYTGTHNQEAIELAEAWGFTVRTMKGFTWVKLNQLAELRITKALAEGDVTDFYDFLALLNAETRMNGGNHTRANTEDVLIATRGAGLERKHAGIKQVVYSPLGAHSEKPWEVRHRLELLYGDVPRIELFSRSAAPGWSHWGNQCATASVELIPGCAIDVVKTEAA

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Crispr_ID: NZ_CP028783_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028783_2

4493770-4493864

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028783_2

>merge|NZ_CP028783|2|4493770-4493864|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP028783|2|2|4493770-4493864|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028783.1\|WP_002888368.1\|4481168_4482878_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP028783.1\|WP_004147026.1\|4497422_4499771_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP028783.1\|WP_002888327.1\|4501117_4502107_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP028783.1\|WP_002888349.1\|4485399_4487757_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP028783.1\|WP_002888348.1\|4490863_4491523_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP028783.1\|WP_002888323.1\|4502927_4503305_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP028783.1\|WP_002888337.1\|4495620_4496319_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP028783.1\|WP_002888332.1\|4496351_4497179_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP028783.1\|WP_002888321.1\|4503309_4504158_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP028783.1\|WP_102008984.1\|4482888_4484391_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP028783.1\|WP_002888345.1\|4492316_4493681_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP028783.1\|WP_002888340.1\|4494005_4495631_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP028783.1\|WP_004151368.1\|4487944_4490851_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP028783.1\|WP_014342872.1\|4492099_4492288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028783.1\|WP_020805925.1\|4504110_4504314_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028783.1\|WP_002888347.1\|4491597_4492137_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP028783.1\|WP_002888324.1\|4502103_4502925_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP028783.1\|WP_002888370.1\|4479985_4480831_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP028783.1\|WP_002888353.1\|4484528_4485224_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP028783.1\|WP_002888329.1\|4499825_4501112_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758

Protein	Function_ID	Function_description	E-value
NZ_CP028783.1\|WP_002888368.1\|4481168_4482878_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP028783.1\|WP_004147026.1\|4497422_4499771_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP028783.1\|WP_002888327.1\|4501117_4502107_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP028783.1\|WP_002888349.1\|4485399_4487757_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP028783.1\|WP_002888348.1\|4490863_4491523_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP028783.1\|WP_002888323.1\|4502927_4503305_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP028783.1\|WP_002888337.1\|4495620_4496319_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP028783.1\|WP_002888332.1\|4496351_4497179_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP028783.1\|WP_002888321.1\|4503309_4504158_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP028783.1\|WP_102008984.1\|4482888_4484391_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP028783.1\|WP_002888345.1\|4492316_4493681_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP028783.1\|WP_002888340.1\|4494005_4495631_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP028783.1\|WP_004151368.1\|4487944_4490851_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP028783.1\|WP_002888347.1\|4491597_4492137_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP028783.1\|WP_002888324.1\|4502103_4502925_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP028783.1\|WP_002888370.1\|4479985_4480831_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP028783.1\|WP_002888353.1\|4484528_4485224_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP028783.1\|WP_002888329.1\|4499825_4501112_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0

>NZ_CP028783.1|WP_002888345.1|4492316_4493681_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP028783.1|WP_014342872.1|4492099_4492288_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>NZ_CP028783.1|WP_002888347.1|4491597_4492137_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP028783.1|WP_002888348.1|4490863_4491523_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP028783.1|WP_004151368.1|4487944_4490851_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP028783.1|WP_002888349.1|4485399_4487757_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP028783.1|WP_002888353.1|4484528_4485224_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP028783.1|WP_102008984.1|4482888_4484391_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHMKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP028783.1|WP_002888368.1|4481168_4482878_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP028783.1|WP_002888370.1|4479985_4480831_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP028783.1|WP_002888340.1|4494005_4495631_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP028783.1|WP_002888337.1|4495620_4496319_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP028783.1|WP_002888332.1|4496351_4497179_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP028783.1|WP_004147026.1|4497422_4499771_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP028783.1|WP_002888329.1|4499825_4501112_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP028783.1|WP_002888327.1|4501117_4502107_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP028783.1|WP_002888324.1|4502103_4502925_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP028783.1|WP_002888323.1|4502927_4503305_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP028783.1|WP_002888321.1|4503309_4504158_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP028783.1|WP_020805925.1|4504110_4504314_-|hypothetical-protein
MFPVAGFVFFLKRSPGRQIAHKRRSGKALAATRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP028783_1	1.1\|4007955\|36\|NZ_CP028783\|CRISPRCasFinder	4007955-4007990	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NZ_CP028783_1	1.1\|4007955\|36\|NZ_CP028783\|CRISPRCasFinder	4007955-4007990	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NZ_CP028783_1	1.1\|4007955\|36\|NZ_CP028783\|CRISPRCasFinder	4007955-4007990	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 1.1|4007955|36|NZ_CP028783|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|4007955|36|NZ_CP028783|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|4007955|36|NZ_CP028783|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

446270 : 479528

uncultured_Caudovirales_phage(73.33%)

integrase,tRNA,capsid,protease,tail,head,portal,terminase

attL 463878:463895|attR 479873:479890

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|446270_447218_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|447232_447742_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|447870_448995_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|448966_449440_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|449465_450008_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|450012_450585_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|450588_451407_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|451403_451661_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|451636_452191_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|457986_458208_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|458501_461612_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|461624_462764_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|463142_463793_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
463878:463895	attL	NA	NA	NA	NA
WP_004150971.1\|464068_465295_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|465387_466329_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|466510_466795_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|466805_467585_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_024194847.1\|467708_467903_-	hypothetical protein	NA	NA	NA	NA
WP_106918304.1\|468036_468306_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|468298_468487_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|468479_468794_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|468790_469159_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|469155_469521_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|469520_471656_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|471998_472334_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|472382_472895_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|473158_474325_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|474376_474937_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|474938_476180_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|476176_476512_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|476508_476808_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|476807_477251_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004198610.1\|477377_477569_+	hypothetical protein	NA	NA	NA	NA
WP_000113647.1\|477526_477883_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|477866_479528_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
479873:479890	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1235841 : 1282076

Salmonella_phage(83.72%)

integrase,coat,tRNA,capsid,lysis,tail,plate,head,portal,terminase

attL 1234135:1234181|attR 1270702:1270748

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1234135:1234181	attL	NA	NA	NA	NA
WP_004151020.1\|1235841_1236867_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.5e-190	93.8
WP_004151019.1\|1236869_1237499_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1237621_1237864_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1237896_1238406_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1238413_1238614_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1238577_1238916_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1238983_1239217_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1239216_1239444_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1239440_1240292_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1240288_1242673_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_004151011.1\|1242835_1243024_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1243035_1243269_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1243364_1244048_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1244034_1245114_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1245113_1246115_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1246636_1246906_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1246962_1248006_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1248005_1249769_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1249909_1250743_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1250759_1251812_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1251815_1252469_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1252564_1253029_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1253028_1253232_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1253235_1253451_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1253431_1253941_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1253945_1254329_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1254325_1254754_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_085955118.1\|1254683_1254887_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.0e-23	77.6
WP_004150997.1\|1254849_1255272_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1255264_1255711_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1255733_1256600_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1256694_1257267_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1257263_1257626_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|1257612_1258521_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|1258513_1259185_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_102008978.1\|1259186_1261136_+\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004200602.1\|1261145_1262264_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1262315_1263389_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1263537_1264710_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1264719_1265235_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1265287_1265587_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1265601_1265721_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_004150984.1\|1265713_1268344_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.9e-115	41.9
WP_004150983.1\|1268340_1268826_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1268822_1269917_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|1269983_1270202_+	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1270229_1270607_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1271210_1271693_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1270702:1270748	attR	NA	NA	NA	NA
WP_004188817.1\|1271803_1272280_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1272269_1272560_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1272626_1272968_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002914159.1\|1273115_1274777_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1274863_1275742_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1275866_1276457_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1276576_1277863_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1277882_1278674_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1278837_1280202_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1280461_1280710_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1280728_1281277_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1281308_1282076_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1727294 : 1734199

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|1727294_1728158_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004899467.1\|1728168_1728942_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_002912636.1\|1729182_1730076_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1730321_1731683_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1732001_1732724_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_019705218.1\|1732720_1734199_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_4

2727444 : 2738331

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151613.1\|2727444_2730552_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004151612.1\|2730606_2731872_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2731902_2732991_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2733077_2733338_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2733635_2734496_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2734516_2735278_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004151610.1\|2735538_2736441_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_004151609.1\|2736452_2737718_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_002210516.1\|2737710_2738331_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_5

2995548 : 3057294

Klebsiella_phage(22.22%)

integrase,holin,tail,transposase,terminase

attL 2995330:2995345|attR 3054600:3054615

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2995330:2995345	attL	NA	NA	NA	NA
WP_002901815.1\|2995548_2996220_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|2996406_2997234_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|2997309_2998575_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|2998576_2998996_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004152765.1\|2999075_3000560_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3000559_3000811_-	hypothetical protein	NA	NA	NA	NA
WP_004152776.1\|3001457_3001880_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_001067855.1\|3002472_3003177_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001389365.1\|3003353_3004118_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001297012.1\|3004205_3004319_+	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|3004624_3005125_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001993321.1\|3005143_3005323_+	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|3005252_3006092_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|3006085_3006433_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|3006596_3007388_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_015057121.1\|3007533_3008493_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.7e-47	40.5
WP_001067855.1\|3008383_3009088_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004152703.1\|3009336_3011280_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.1e-37	69.8
WP_004152702.1\|3011521_3012121_+	hypothetical protein	NA	NA	NA	NA
WP_004152701.1\|3012154_3012349_-	hypothetical protein	NA	NA	NA	NA
WP_004152700.1\|3012345_3013077_-	hypothetical protein	NA	NA	NA	NA
WP_022644627.1\|3013080_3016035_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	4.2e-44	68.3
WP_004152652.1\|3016111_3019180_-	hypothetical protein	A0A286S259	Klebsiella_phage	0.0e+00	97.5
WP_004152651.1\|3019176_3019557_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
WP_004152650.1\|3019566_3020049_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.7e-80	94.4
WP_102009026.1\|3020229_3020694_-	hypothetical protein	A0A286S298	Klebsiella_phage	6.7e-58	67.8
WP_004152648.1\|3021008_3021344_-	hypothetical protein	NA	NA	NA	NA
WP_004217331.1\|3021427_3024325_-\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	1.6e-104	32.7
WP_099119318.1\|3024586_3024778_-	hypothetical protein	S4TR42	Salmonella_phage	7.8e-05	78.3
WP_004217333.1\|3025002_3025359_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_004217335.1\|3025435_3025612_-	hypothetical protein	NA	NA	NA	NA
WP_004226994.1\|3025779_3026262_-	hypothetical protein	NA	NA	NA	NA
WP_004217341.1\|3026315_3027488_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_004190640.1\|3027511_3027904_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_004217343.1\|3027900_3028452_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.3e-28	39.9
WP_004217344.1\|3028453_3028837_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
WP_004190646.1\|3028823_3029057_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
WP_004217346.1\|3029066_3029321_-	hypothetical protein	J9Q7U0	Salmonella_phage	1.0e-20	52.4
WP_004217348.1\|3029322_3029718_-	hypothetical protein	A0A1B1P9F2	Acinetobacter_phage	4.3e-13	38.5
WP_004190653.1\|3030039_3030993_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
WP_004217351.1\|3031003_3031789_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.0e-66	63.9
WP_019405022.1\|3032319_3033432_-	hypothetical protein	I6PD76	Cronobacter_phage	5.6e-111	55.1
WP_004218551.1\|3033415_3034816_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	1.1e-127	53.5
WP_004190663.1\|3034815_3036123_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
WP_004218556.1\|3036100_3037105_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
WP_004244013.1\|3037653_3037839_-	hypothetical protein	NA	NA	NA	NA
WP_004218558.1\|3037967_3038213_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	4.6e-34	96.3
WP_019405025.1\|3039026_3039221_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.4e-25	89.1
WP_004190672.1\|3039171_3039447_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_004190674.1\|3039443_3039788_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
WP_004218565.1\|3039784_3040324_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_004218567.1\|3040320_3040632_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.8e-49	100.0
WP_022644626.1\|3041098_3042145_-\|transposase	IS481-like element ISKpn28 family transposase	A0A0M3LR35	Mannheimia_phage	1.3e-05	21.9
WP_004218530.1\|3042546_3043575_+	hypothetical protein	NA	NA	NA	NA
WP_004196831.1\|3043782_3044028_-	hypothetical protein	NA	NA	NA	NA
WP_004218528.1\|3044083_3044386_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004201118.1\|3044382_3045231_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004201117.1\|3045227_3046088_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|3046173_3046395_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3046435_3046663_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|3046774_3047473_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_019405077.1\|3047495_3047615_+	hypothetical protein	NA	NA	NA	NA
WP_004201109.1\|3047760_3048837_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|3048918_3049122_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004135674.1\|3049550_3049745_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|3049833_3050118_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|3050133_3050979_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_004201102.1\|3051264_3051945_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|3051941_3052370_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|3052366_3053029_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004190725.1\|3053025_3053340_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_004153574.1\|3053236_3054424_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	1.1e-120	52.4
WP_004151901.1\|3054600_3055491_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
3054600:3054615	attR	NA	NA	NA	NA
WP_004140266.1\|3055490_3056483_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3056484_3057294_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_6

3433383 : 3526334

Salmonella_phage(56.14%)

tRNA,integrase,capsid,protease,lysis,tail,plate,head,portal,terminase

attL 3488909:3488927|attR 3526409:3526427

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3433383_3434676_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3434766_3436110_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3436118_3436730_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|3436852_3441106_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3441241_3441736_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_002898019.1\|3442268_3443237_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|3443351_3445118_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3445118_3446840_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3446884_3447586_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3447939_3448158_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3448278_3450558_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3450588_3450906_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3451231_3451453_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_071528213.1\|3451407_3451590_-	hypothetical protein	NA	NA	NA	NA
WP_004150848.1\|3451529_3453470_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3453466_3454582_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3454728_3456387_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3456806_3457502_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3457617_3458517_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|3458660_3460313_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3460323_3461292_+	NADH oxidoreductase	NA	NA	NA	NA
WP_085666582.1\|3461242_3461446_+	hypothetical protein	NA	NA	NA	NA
WP_002896408.1\|3461503_3461938_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3462089_3463808_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3463846_3464848_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3464858_3466301_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3466388_3467402_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3467398_3468229_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3468260_3469400_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_004147767.1\|3469452_3469632_+	hypothetical protein	NA	NA	NA	NA
WP_002896394.1\|3470277_3470793_+	lipoprotein	NA	NA	NA	NA
WP_002896392.1\|3471019_3471748_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3471768_3472500_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3472506_3473223_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|3473222_3473891_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3474074_3474806_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3474848_3476321_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3476317_3477034_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3477112_3478240_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3478281_3478770_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3478827_3479673_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3479669_3480623_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3480633_3481767_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3481930_3483043_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3483391_3483871_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3483959_3484862_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3485683_3485971_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3486173_3486437_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3486443_3486827_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|3487093_3488779_+	aspartate:alanine antiporter	NA	NA	NA	NA
3488909:3488927	attL	NA	NA	NA	NA
WP_000972391.1\|3488998_3489217_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3489308_3490409_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|3490405_3490891_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896222.1\|3490887_3493515_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896220.1\|3493507_3493627_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3493641_3493941_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3493993_3494509_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3494518_3495691_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3495829_3496906_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896188.1\|3496935_3497139_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3497135_3497867_-	hypothetical protein	NA	NA	NA	NA
WP_004152882.1\|3497870_3500822_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_004150856.1\|3500823_3501423_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3501415_3502324_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_002896177.1\|3502669_3503242_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004150857.1\|3503336_3504029_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3504025_3504472_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3504464_3504896_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896168.1\|3504991_3505420_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3505416_3505800_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3505804_3506314_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3506294_3506510_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3506513_3506717_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|3506716_3507181_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|3507276_3507927_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3507930_3508989_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3509005_3509839_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3509981_3511748_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3511747_3512773_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|3512834_3514577_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|3514852_3515530_-	hypothetical protein	NA	NA	NA	NA
WP_001316229.1\|3515644_3515950_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3515888_3516077_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004150862.1\|3516230_3518645_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|3518641_3519499_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|3519495_3519723_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|3519722_3519956_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|3520023_3520365_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|3520328_3520529_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3520536_3521046_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3521078_3521300_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|3521445_3522324_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|3522335_3523280_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|3523378_3524863_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3524862_3525114_-	hypothetical protein	NA	NA	NA	NA
WP_004151720.1\|3525281_3526334_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0
3526409:3526427	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3970979 : 4019045

Escherichia_phage(25.45%)

integrase,tRNA,lysis,head,transposase

attL 3964657:3964703|attR 4016117:4016163

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3964657:3964703	attL	NA	NA	NA	NA
WP_087759376.1\|3970979_3972100_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.0e-52	43.2
WP_004151249.1\|3972669_3975147_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	2.7e-198	45.6
WP_004151250.1\|3975133_3975529_-	hypothetical protein	F1C5F2	Cronobacter_phage	8.0e-36	54.0
WP_004199076.1\|3975525_3975996_-	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_004165520.1\|3975995_3976415_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.8e-30	48.5
WP_004151253.1\|3976514_3979961_-	tape measure protein	Q5G8W8	Enterobacteria_phage	1.4e-163	48.6
WP_004151254.1\|3980053_3980557_-	hypothetical protein	NA	NA	NA	NA
WP_004151255.1\|3980684_3981470_-	phage repressor protein	A0A2L1IV39	Escherichia_phage	1.9e-84	59.7
WP_004151256.1\|3981535_3982249_-	hypothetical protein	H6WRU8	Salmonella_phage	3.9e-49	50.2
WP_004151257.1\|3982238_3982409_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
WP_004151258.1\|3982508_3982868_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.8e-16	47.5
WP_004151259.1\|3982884_3983355_-	hypothetical protein	NA	NA	NA	NA
WP_004151260.1\|3983648_3983903_-	hypothetical protein	K7PM89	Enterobacteria_phage	6.7e-20	73.0
WP_004151261.1\|3983905_3984661_-	DNA-binding protein	K7PGT4	Enterobacteria_phage	2.4e-60	51.0
WP_004151262.1\|3984836_3985514_-	hypothetical protein	F1C5E8	Cronobacter_phage	4.8e-73	57.9
WP_004151263.1\|3985566_3986319_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	5.8e-43	42.1
WP_004151264.1\|3986387_3986780_-	hypothetical protein	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
WP_004151265.1\|3986776_3987202_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_004151266.1\|3987204_3987567_-	hypothetical protein	A0A173GCE0	Salmonella_phage	1.8e-18	45.0
WP_004151267.1\|3987566_3987740_-	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-13	56.1
WP_004151268.1\|3987739_3988120_-	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	55.3
WP_004151269.1\|3988122_3988362_-	hypothetical protein	NA	NA	NA	NA
WP_004151270.1\|3988372_3989467_-	hypothetical protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
WP_004151271.1\|3989478_3989907_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
WP_004151272.1\|3989910_3991296_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.3e-154	60.0
WP_004151273.1\|3991368_3991845_-	hypothetical protein	NA	NA	NA	NA
WP_004151274.1\|3991886_3992891_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.0e-116	69.7
WP_004151275.1\|3992865_3994287_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-148	57.1
WP_004151276.1\|3994299_3995772_-	hypothetical protein	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
WP_004151277.1\|3995771_3996374_-	hypothetical protein	G8C7P2	Escherichia_phage	5.4e-76	80.9
WP_004151279.1\|3996744_3997074_+	hypothetical protein	NA	NA	NA	NA
WP_004151280.1\|3997179_3997644_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.4e-55	73.2
WP_004151281.1\|3997640_3998171_-	lysozyme	G9L6J6	Escherichia_phage	6.0e-79	78.5
WP_004151282.1\|3998173_3998422_-	hypothetical protein	NA	NA	NA	NA
WP_022644626.1\|3999158_4000205_-\|transposase	IS481-like element ISKpn28 family transposase	A0A0M3LR35	Mannheimia_phage	1.3e-05	21.9
WP_004151283.1\|4000432_4001122_-	antitermination protein	I6PDF8	Cronobacter_phage	1.4e-56	54.5
WP_004151284.1\|4001118_4001649_-	HNH endonuclease	A0A193GYW9	Enterobacter_phage	5.2e-30	43.1
WP_004151285.1\|4001641_4001779_-	YlcG family protein	NA	NA	NA	NA
WP_004151286.1\|4001775_4002411_-	protein ninG	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
WP_004151287.1\|4002403_4002574_-	NinE family protein	G8C7V4	Escherichia_phage	1.3e-14	73.2
WP_004151288.1\|4002573_4003029_-	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
WP_004151290.1\|4003281_4003530_-	hypothetical protein	NA	NA	NA	NA
WP_004151291.1\|4003529_4004177_-	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	4.5e-12	32.6
WP_004151293.1\|4004349_4005192_-	translation repressor RelE	A0A2H4FRZ0	Salmonella_phage	1.8e-29	60.8
WP_102009029.1\|4005298_4005805_-	hypothetical protein	A0A0A6Z565	Enterobacter_phage	1.1e-26	58.7
WP_004151295.1\|4005801_4006095_-	protein ren	O48423	Enterobacteria_phage	3.3e-26	65.6
WP_004151296.1\|4006094_4007525_-	AAA family ATPase	Q9MCT4	Escherichia_phage	2.6e-185	66.7
WP_004151297.1\|4007514_4008414_-	hypothetical protein	F1C5C3	Cronobacter_phage	5.4e-88	54.9
WP_001548453.1\|4008638_4008860_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004151299.1\|4008900_4009134_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	4.3e-13	50.7
WP_004151300.1\|4009261_4009951_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.3e-61	52.2
WP_004151301.1\|4010301_4010517_+	hypothetical protein	B5WZV1	Pseudomonas_phage	1.6e-09	48.6
WP_004151303.1\|4010616_4010811_+	hypothetical protein	NA	NA	NA	NA
WP_004151304.1\|4010899_4011184_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.0e-30	62.8
WP_004151305.1\|4011199_4012045_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	6.9e-69	59.2
WP_004151306.1\|4012041_4012722_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
WP_004151308.1\|4012718_4012877_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_004151310.1\|4012873_4013530_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	87.5
WP_004151312.1\|4013526_4014294_+	hypothetical protein	D5LH17	Escherichia_phage	1.7e-66	53.4
WP_004151314.1\|4014290_4014509_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.2e-09	47.2
WP_004151316.1\|4014510_4014726_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
WP_004151317.1\|4014727_4015063_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_071531173.1\|4015059_4016103_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.5e-177	86.2
WP_004143017.1\|4016533_4017400_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
4016117:4016163	attR	NA	NA	NA	NA
WP_004143016.1\|4017401_4017614_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|4017659_4019045_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_8

4228600 : 4240254

Enterobacteria_phage(70.0%)

integrase

attL 4229050:4229064|attR 4252107:4252121

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004144574.1\|4228600_4229704_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
4229050:4229064	attL	NA	NA	NA	NA
WP_002889940.1\|4229714_4230968_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4231320_4232511_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4232498_4233449_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_004152979.1\|4233448_4233874_+	hypothetical protein	NA	NA	NA	NA
WP_002889930.1\|4234442_4235009_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
WP_002889919.1\|4235026_4235272_-	hypothetical protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_002889917.1\|4235268_4236006_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
WP_002889915.1\|4236547_4236814_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_024940872.1\|4236810_4237368_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4237364_4237592_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4237588_4237909_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4237920_4240254_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
4252107:4252121	attR	NA	NA	NA	NA

DBSCAN-SWA_9

5226954 : 5303850

Enterobacteria_phage(35.71%)

tRNA,integrase,capsid,protease,tail,plate,head,portal,terminase

attL 5264391:5264432|attR 5299628:5299669

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002883023.1\|5226954_5228055_+\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_002883021.1\|5228106_5228466_-	YijD family membrane protein	NA	NA	NA	NA
WP_004151856.1\|5228481_5229117_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA
WP_002883016.1\|5229313_5230714_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
WP_002883015.1\|5230696_5231614_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA
WP_004146283.1\|5231872_5233246_-	argininosuccinate lyase	NA	NA	NA	NA
WP_020314726.1\|5233204_5233387_+	hypothetical protein	NA	NA	NA	NA
WP_085955164.1\|5233345_5234122_-	acetylglutamate kinase	NA	NA	NA	NA
WP_002883013.1\|5234128_5235133_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_002883011.1\|5235246_5236398_+	acetylornithine deacetylase	NA	NA	NA	NA
WP_004151857.1\|5236656_5239308_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_002882986.1\|5239351_5240002_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_002882984.1\|5240149_5241013_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002882982.1\|5241218_5241881_+	fructose-6-phosphate aldolase	M4SLG0	Cyanophage	1.0e-27	34.0
WP_004146274.1\|5241935_5243039_+	glycerol dehydrogenase	NA	NA	NA	NA
WP_002882956.1\|5243102_5243984_-	DMT family transporter	NA	NA	NA	NA
WP_002882952.1\|5244127_5245015_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_002882948.1\|5245243_5246152_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002882947.1\|5246243_5246615_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_002882946.1\|5246652_5248209_-	bifunctional metallophosphatase/5'-nucleotidase	A0A0B5J7T1	Pandoravirus	5.6e-08	23.8
WP_002882945.1\|5248347_5249484_+	hypothetical protein	NA	NA	NA	NA
WP_002882944.1\|5249458_5251891_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA
WP_002882943.1\|5251893_5253054_-	cystathionine gamma-synthase	NA	NA	NA	NA
WP_002882924.1\|5253321_5253639_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_002882922.1\|5253740_5253953_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_004151858.1\|5254205_5256401_+	primosomal protein N'	NA	NA	NA	NA
WP_002882921.1\|5256551_5257580_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA
WP_002882919.1\|5257673_5258642_+	cell division protein FtsN	NA	NA	NA	NA
WP_002882918.1\|5258733_5259264_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_002882917.1\|5259273_5260608_+	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	2.1e-43	29.5
WP_085352923.1\|5260671_5261598_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_002882913.1\|5261690_5262176_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_002882911.1\|5262237_5263200_-	6-phosphofructokinase	NA	NA	NA	NA
WP_002882907.1\|5263396_5264299_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
5264391:5264432	attL	NA	NA	NA	NA
WP_004187281.1\|5264655_5264901_+	hypothetical protein	A0A0A7NPW2	Enterobacteria_phage	4.2e-19	57.5
WP_071526719.1\|5264901_5265117_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_102009012.1\|5265144_5265393_-	hypothetical protein	NA	NA	NA	NA
WP_102009011.1\|5265438_5266593_-	phage late control D family protein	B9A7A9	Serratia_phage	3.9e-163	73.6
WP_032414459.1\|5266744_5267926_+\|tail	tail protein	A0A0A7NV69	Enterobacteria_phage	6.1e-156	69.6
WP_004187274.1\|5267926_5268442_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.6e-63	70.0
WP_032723923.1\|5268493_5268793_+\|tail	tail protein	B9A7B2	Serratia_phage	2.2e-30	72.7
WP_050554917.1\|5268813_5268966_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.5e-11	71.4
WP_102009010.1\|5268955_5271691_+\|tail	phage tail tape measure protein	B9A7B3	Serratia_phage	5.6e-237	79.0
WP_064182245.1\|5271702_5272191_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	7.5e-52	60.5
WP_102009009.1\|5272288_5273362_-\|tail	phage tail protein	Q37842	Escherichia_phage	2.5e-31	45.5
WP_102009008.1\|5273376_5276712_-	SGNH/GDSL hydrolase family protein	A0A1I9SEN3	Klebsiella_phage	1.5e-98	31.7
WP_064184526.1\|5276708_5277317_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	4.7e-43	45.9
WP_064184509.1\|5277309_5278209_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	4.3e-93	62.5
WP_004187254.1\|5278195_5278564_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	2.3e-29	57.4
WP_064184510.1\|5278560_5279145_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	9.6e-62	60.6
WP_102009007.1\|5279144_5279786_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	1.4e-45	49.8
WP_004187249.1\|5279782_5280241_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.1e-31	46.8
WP_064184512.1\|5280385_5280781_-	hypothetical protein	NA	NA	NA	NA
WP_102009006.1\|5280777_5281329_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.8e-33	42.5
WP_102009005.1\|5281325_5281607_-	hypothetical protein	NA	NA	NA	NA
WP_064184514.1\|5281597_5281798_-\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	2.3e-15	64.6
WP_102009004.1\|5281797_5282295_-\|head	head completion/stabilization protein	B9A7B7	Serratia_phage	2.2e-59	69.7
WP_064184516.1\|5282397_5283258_-\|terminase	terminase	B9A7B6	Serratia_phage	1.0e-83	68.4
WP_064184517.1\|5283304_5284354_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	2.3e-106	53.9
WP_102009003.1\|5284377_5285211_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	1.1e-95	65.6
WP_060528038.1\|5285371_5287093_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	4.3e-227	66.5
WP_032723905.1\|5287113_5288148_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	3.1e-140	68.9
WP_047049910.1\|5288580_5289414_-	hypothetical protein	A0A0M4R2T6	Salmonella_phage	6.7e-133	83.4
WP_047049912.1\|5289410_5289626_-	hypothetical protein	A0A1J0I2F3	Salmonella_phage	1.1e-18	86.2
WP_064172686.1\|5289880_5290576_-	hypothetical protein	A0A0M4S5U3	Salmonella_phage	1.2e-90	69.8
WP_047049914.1\|5290679_5290895_-	hypothetical protein	NA	NA	NA	NA
WP_102009002.1\|5290891_5293519_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	1.3e-195	53.6
WP_102009001.1\|5293511_5294516_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	2.3e-103	58.6
WP_102009000.1\|5294816_5295704_-	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	9.1e-80	55.2
WP_102008999.1\|5295696_5295891_-	hypothetical protein	NA	NA	NA	NA
WP_102008998.1\|5295887_5296115_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.4e-05	40.6
WP_048299728.1\|5296123_5296672_-	3'-5' exoribonuclease	NA	NA	NA	NA
WP_019724780.1\|5296668_5296893_-	hypothetical protein	NA	NA	NA	NA
WP_004187204.1\|5296962_5297235_-	hypothetical protein	NA	NA	NA	NA
WP_032705924.1\|5297249_5297480_-	DUF2724 domain-containing protein	A0A0M4S6M9	Salmonella_phage	1.5e-23	68.6
WP_048299726.1\|5297495_5297714_-	hypothetical protein	A0A0M5M1I3	Salmonella_phage	9.6e-07	49.1
WP_032723883.1\|5297740_5298013_-	hypothetical protein	Q1JS20	Enterobacteria_phage	1.1e-39	84.4
WP_004187199.1\|5298166_5298460_+	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	7.3e-26	58.8
WP_102008997.1\|5298529_5299510_+\|integrase	tyrosine-type recombinase/integrase	U5N0A8	Enterobacteria_phage	2.4e-153	83.3
WP_002882903.1\|5299694_5300198_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
5299628:5299669	attR	NA	NA	NA	NA
WP_002882901.1\|5300347_5301046_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	4.0e-06	30.3
WP_002882898.1\|5301042_5302416_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	1.4e-10	24.0
WP_002882896.1\|5302482_5303157_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_002882894.1\|5303229_5303850_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	3.5e-62	57.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP028782

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6388 : 64447

Escherichia_phage(33.33%)

integrase,transposase

attL 8114:8173|attR 60106:60927

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000227969.1\|6388_7465_+\|transposase	IS110 family transposase	NA	NA	NA	NA
8114:8173	attL	NA	NA	NA	NA
WP_001067855.1\|8177_8882_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_023145375.1\|9319_9634_-	hypothetical protein	NA	NA	NA	NA
WP_000845048.1\|9572_10586_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_063840321.1\|10877_11432_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001749986.1\|11528_11981_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_001749985.1\|12113_12587_+	trimethoprim-resistant dihydrofolate reductase DfrA27	G3MBI7	Bacillus_virus	1.4e-15	29.1
WP_001749984.1\|12767_13613_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16	NA	NA	NA	NA
WP_000679427.1\|13729_14077_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|14070_14910_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|15314_16856_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_003833285.1\|18162_18615_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_063866158.1\|18656_19301_-	quinolone resistance pentapeptide repeat protein QnrB52	NA	NA	NA	NA
WP_000259031.1\|19791_20631_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_001993321.1\|20560_20740_-	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|20758_21259_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001297012.1\|21564_21678_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|21765_22530_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_024139167.1\|22571_22784_+	hypothetical protein	NA	NA	NA	NA
WP_001749969.1\|22796_24005_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001288432.1\|24038_25472_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_001749967.1\|25853_26060_-	hypothetical protein	NA	NA	NA	NA
WP_102009031.1\|26064_26577_-	restriction endonuclease	NA	NA	NA	NA
WP_001067855.1\|26601_27306_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071549086.1\|27251_27512_-	hypothetical protein	NA	NA	NA	NA
WP_001039463.1\|28057_28444_+	hypothetical protein	NA	NA	NA	NA
WP_000861580.1\|28452_28644_+	hypothetical protein	NA	NA	NA	NA
WP_000807690.1\|29655_30411_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	4.5e-136	96.0
WP_001327128.1\|30411_30606_+	hypothetical protein	NA	NA	NA	NA
WP_032445200.1\|31089_31278_-	hypothetical protein	NA	NA	NA	NA
WP_001568020.1\|31983_33399_-	AAA family ATPase	NA	NA	NA	NA
WP_023292098.1\|33395_35123_-	AAA family ATPase	NA	NA	NA	NA
WP_000608644.1\|37252_38515_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_032277257.1\|38764_39640_+	class A extended-spectrum beta-lactamase CTX-M-27	A0A1B0VBP7	Salmonella_phage	1.2e-153	100.0
WP_012579081.1\|39719_40643_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.2e-177	99.7
WP_001141270.1\|43219_43495_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_000842086.1\|43525_44635_+	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	3.7e-30	28.1
WP_008813494.1\|44676_45075_+	VOC family protein	NA	NA	NA	NA
WP_047671991.1\|45138_45975_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000470623.1\|46002_46638_-	recombinase family protein	NA	NA	NA	NA
WP_000124025.1\|46805_49793_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.4e-294	53.6
WP_001138064.1\|50127_53094_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_046788546.1\|53102_53504_+	hypothetical protein	NA	NA	NA	NA
WP_001067784.1\|53588_54293_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
WP_001447541.1\|55217_56102_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214122.1\|56318_57533_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_000743213.1\|57806_58031_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|58027_58765_-	recombinase family protein	NA	NA	NA	NA
WP_001550559.1\|58871_59363_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|59396_60101_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000113282.1\|60112_60769_-	tetracycline resistance transcriptional repressor TetR(D)	NA	NA	NA	NA
WP_001039466.1\|60864_62049_+	tetracycline efflux MFS transporter Tet(D)	NA	NA	NA	NA
60106:60927	attR	NA	NA	NA	NA
WP_000842134.1\|62143_63253_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.8e-33	30.2
WP_001067855.1\|63742_64447_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028781

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028783

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP028782

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection