CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP028785	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020049 plasmid p2_020049, complete sequence	0 crisprs	NA	0	0
NZ_CP028787	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020049 chromosome, complete genome	3 crisprs	WYL,csa3,cas3,DEDDh,DinG,RT	1	9
NZ_CP028784	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020049 plasmid p1_020049, complete sequence	0 crisprs	csa3,cas3,RT	0	2
NZ_CP028786	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020049 plasmid pNDM1_020049, complete sequence	0 crisprs	NA	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028787_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028787_1

1880122-1880229

Orphan

Consensus_repeat	Method
CGGCACAAACGCCGAATGCAAACGGCACAAACGCCGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028787_1

>merge|NZ_CP028787|1|1880122-1880229|CRISPRCasFinder
CGGCACAAACGCCGAATGCAAACGGCACAAACGCCGAATGCATTCGGCATAAACGCCATATCCAGGATTCGGCACAAACGCCGAATGGAAACGGCACAAACGCCGAAT

>NZ_CP028787|1|1|1880122-1880229|CRISPRCasFinder
CGGCACAAACGCCGAATGCAAACGGCACAAACGCCGAAT	GCATTCGGCATAAACGCCATATCCAGGATT
CGGCACAAACGCCGAATGGAAACGGCACAAACGCCGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028787.1\|WP_072310876.1\|1874861_1875509_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119344
NZ_CP028787.1\|WP_072310887.1\|1885275_1885875_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_072310885.1\|1884333_1884642_+\|DUF968-domain-containing-protein	unknown	unknown	gnl\|CDD\|374800
NZ_CP028787.1\|WP_004196547.1\|1883822_1884092_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_032428570.1\|1878669_1878891_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP028787.1\|WP_072310886.1\|1884634_1885279_+\|phage-N-6-adenine-methyltransferase	unknown	unknown	gnl\|CDD\|368643
NZ_CP028787.1\|WP_072310883.1\|1881382_1882174_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274755
NZ_CP028787.1\|WP_072310879.1\|1879446_1879701_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_004196543.1\|1878930_1879251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_072310882.1\|1881168_1881390_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184640
NZ_CP028787.1\|WP_072310884.1\|1882962_1883562_+\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946
NZ_CP028787.1\|WP_023312753.1\|1875842_1876067_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_072310877.1\|1875501_1875846_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_101986833.1\|1877076_1877265_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_072310878.1\|1877938_1878571_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP028787.1\|WP_048293368.1\|1876592_1876886_-\|host-cell-division-inhibitory-peptide-Kil	unknown	unknown	gnl\|CDD\|310716
NZ_CP028787.1\|WP_072310881.1\|1880773_1881169_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_064151809.1\|1882166_1882799_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379401
NZ_CP028787.1\|WP_077271814.1\|1876063_1876291_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_072310898.1\|1883561_1883750_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP028787.1\|WP_072310876.1\|1874861_1875509_-\|hypothetical-protein	gnl\|CDD\|119344	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	1.47696e-05
NZ_CP028787.1\|WP_072310884.1\|1882962_1883562_+\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	2.84508e-09
NZ_CP028787.1\|WP_048293368.1\|1876592_1876886_-\|host-cell-division-inhibitory-peptide-Kil	gnl\|CDD\|310716	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein. This family consists of several Bacteriophage lambda Kil protein like sequences from both phages and bacteria. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of the lambda kil gene.	0.000127519
NZ_CP028787.1\|WP_032428570.1\|1878669_1878891_+\|transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.36109e-11
NZ_CP028787.1\|WP_072310883.1\|1881382_1882174_+\|hypothetical-protein	gnl\|CDD\|274755	TIGR03734, PRTRC_parB, PRTRC system ParB family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family the member related to ParB, and is designated PRTRC system ParB family protein.	5.79129e-08
NZ_CP028787.1\|WP_064151809.1\|1882166_1882799_+\|hypothetical-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	4.61821e-10
NZ_CP028787.1\|WP_072310882.1\|1881168_1881390_+\|hypothetical-protein	gnl\|CDD\|184640	PRK14351, ligA, NAD-dependent DNA ligase LigA; Provisional.	0.000531487
NZ_CP028787.1\|WP_072310885.1\|1884333_1884642_+\|DUF968-domain-containing-protein	gnl\|CDD\|374800	pfam16786, RecA_dep_nuc, Recombination enhancement, RecA-dependent nuclease. REF is a family of P1-like phage RecA-dependent nucleases. It does not appear to act as a positive RecA regulator. It is a new kind of enzyme, a RecA-dependent nuclease.	4.43715e-09
NZ_CP028787.1\|WP_072310878.1\|1877938_1878571_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	9.82207e-26
NZ_CP028787.1\|WP_072310886.1\|1884634_1885279_+\|phage-N-6-adenine-methyltransferase	gnl\|CDD\|368643	pfam05869, Dam, DNA N-6-adenine-methyltransferase (Dam). This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.	9.2928e-63

>NZ_CP028787.1|WP_072310879.1|1879446_1879701_+|hypothetical-protein
MCNHSAAELIARLKRAYPAYEPSEMGNACDGIPKSGSRFQHRHKSHMVTVITATDKDVSYRKACGKVGWMGLREFLRLHNEVLV
>NZ_CP028787.1|WP_004196543.1|1878930_1879251_+|hypothetical-protein
MENAIARKLEPPILNPIEIEGILLNRLLSISQKTFAEMRGVSESTISRRKSEGYYAEMAKEIAALGLQVVPPEAVVVSRHYLQSVETLADIGLRAERCRPGPLGWD
>NZ_CP028787.1|WP_032428570.1|1878669_1878891_+|transcriptional-regulator
METISQRLKKKREELNLSQDQLAKLAGMRQQSIQAIEAGSTKRPRYLVELARALKCKPEWLLFGDDQNKSPAA
>NZ_CP028787.1|WP_072310878.1|1877938_1878571_-|helix-turn-helix-domain-containing-protein
MSLADRVKQKRMELGLTQTEAAERAGIRQQSWQSIEDGKTLKPRNIVGIAKALKCDPSWLMNGGAFMPIGEMNSRRVPLISYVQAGALAEKKSIEAFDGDFEYILTDLDLSVHSFALRIEGDSMEPDFKAGDVIIVDPELEPSPGEFVVAKNGGQEATFKKYRPTYIDMQGVQHFELVPLNDDYPVINCDTQPVEIIGVMIEHRIYRRKR
>NZ_CP028787.1|WP_101986833.1|1877076_1877265_-|hypothetical-protein
MRLCARGSVKAVPLVSRSGVERKLPIPVVNWLVSPGGTRHCIARSVGTQIHMTVRVANDPQT
>NZ_CP028787.1|WP_048293368.1|1876592_1876886_-|host-cell-division-inhibitory-peptide-Kil
MANLLHGNPAFKAAQSKLAIAQFIGNSEMWSEAFSSMKDIYEEAKHAEDFMFCGREESLSGLKFNDVILNYDMYGDLVSVNADSGNARYKINTEVSY
>NZ_CP028787.1|WP_077271814.1|1876063_1876291_-|hypothetical-protein
MIITSNRIPSHVNEKESHVLSLYSKGDIKPCRIKCGNLSLKIGRKWRLLSRNNGTCWEVMSHEKYNQLKDRKSQS
>NZ_CP028787.1|WP_023312753.1|1875842_1876067_-|hypothetical-protein
MKIEFNDQGSDSVITLTSTVFEFRLHNRVVDTALFLAPSVRAKRSGFFVLKTVITGKTSHVLRAYKAIKAEASR
>NZ_CP028787.1|WP_072310877.1|1875501_1875846_-|hypothetical-protein
MSKSLNARCIRRWKVKFKSVCDSKVNPYWRKSDLRGYIREAALTTAYSMVESMAERNAKVDYDGSLQGWTPEFSAWYRERHEQYLKEARDYLDEDATNDEIDEEIENELEAWND
>NZ_CP028787.1|WP_072310876.1|1874861_1875509_-|hypothetical-protein
MTERGMIFNAEMVRAILDGRKTQTRRPIKWKQTRFTEIGEREDGSKWPWSEDAEHACDFWHPCPFGAVGDRIWVRETFTGHYLDDDQIQDIKDGRDKASSLCEYRADYPDGYQAADGWTPSIHMPRWASRILLEITDVRVERLNAISEEDARAEGIIDGGCLNCGEPEPCGCANPEPDATDAFAYLWQSIYGQESWNANPWVWVIEFERVEGGAA
>NZ_CP028787.1|WP_072310881.1|1880773_1881169_+|hypothetical-protein
MEKITDVLKELEKVTCRELAVYFDLTAPEMLARLMVLEREGKAQNLNGYWMPGGSAEPVAVTSKLTALDIKLLQSVPVGVWFEWQSLAGFVDRPRYRCERLVAAGFMNSKVTNPANPHHGTKFQKIREVTR
>NZ_CP028787.1|WP_072310882.1|1881168_1881390_+|hypothetical-protein
MREIPDCPVCGSAAEFYFRDYQAGACSGALRCPYGHLRVQDSYWAGGKSKSKTRLIEKWSQQVERKKGEVKNG
>NZ_CP028787.1|WP_072310883.1|1881382_1882174_+|hypothetical-protein
MAKNSIDAYGASGKTNVLMFEPENLHLVTDKTHPLYDERIHLPISEAMVLNIMDQGVLEPIIVWKDPESGLACVVDGRQRVRHTLEANKRLSKEGKEPLLVPAVTKRGSAVRMAQAMVSANEIRQADTPLGRAKKMADALERGHDEDDLALMFGVSVQTVRATLSLLDATQAVKDAVESGTVTVTQARQLASLKPEEQREKVAEIEQATAGTTGHEKARRQRAVLGETKPRLKSRKEITKALEGASGEYAHALRWVLGEASHD
>NZ_CP028787.1|WP_064151809.1|1882166_1882799_+|hypothetical-protein
MTDITELAQRLKAAAEKATQGNWRAFQYHDGRCGIGGGHNAEIMVCEHISKERPHDAMFIALANPANVLALVEALEKEQRYTEELREWNAGLAQESCERQQRISELLQGKVGSALLERENHHVEVVGKLTKVITELESEVEKWRQEAEAWEQVAEKQLATAIELESRTVKLPDLRQIVSGDRYVWSDGVYNYSQDVKVALAAAGIKVEAE
>NZ_CP028787.1|WP_072310884.1|1882962_1883562_+|DUF551-domain-containing-protein
MTKSTITRERVVALIAEHSYDSALVDALEHLLSAMDSEPVAIIDQANLDYLRSGADADVWPPEREEMGDVLLYRHPQPAPVVPDEKDKTVDADDHPLLWSFNEGWNACPSAMLAASTQSPGSEPATVPGKWIPVSERMPPSRHEVLVGCWWGEKPRWCCKWATYIPGHPDAQSSGWLIPGASWTPTHWMELPAAPQEVK
>NZ_CP028787.1|WP_072310898.1|1883561_1883750_+|hypothetical-protein
MPYFFLIFVISSQSSNMQVVPMQSMEQCKAAIKAMKVADDRREWSDISPHVDNIQCVEVNGA
>NZ_CP028787.1|WP_004196547.1|1883822_1884092_+|hypothetical-protein
MRMITRKKPAFTELYQTGVLTRIAAVKSPDGGGWRLFGLWRGKEIAVFVEAARGGIREWSGLDYLANFCASCGISLWEVHNKVAEKAPE
>NZ_CP028787.1|WP_072310885.1|1884333_1884642_+|DUF968-domain-containing-protein
MSKSKTKAEKLHLSRVAALGCIVCRNLNYGESPAEIHHCSSGTGLSVRADNFHVIPLCHAHHRTGGYGVAIHAGRKSWEEKFGTEAELLSQVLLELGGTVND
>NZ_CP028787.1|WP_072310886.1|1884634_1885279_+|phage-N-6-adenine-methyltransferase
MTNFYCEALTALRSAPHHYLKEVGDQWRTPDLLFWGINAMFGPLMLDLFADDSNAKCPVWYTAEDNALTQDWSEMLSSIGGAAYGNPPYSRSQYHEKQAITGMTHIMNYAAAQREKGGRYVFLVKSATSETWWPEDADHVCFIRGRIGFDLPEWFKPADDKQRPTSAFFAGAIVVFDKSWAGERFSYISRSVLEAKGRAFMSLAQFAAGKGDIA
>NZ_CP028787.1|WP_072310887.1|1885275_1885875_+|hypothetical-protein
MTPLQRRRQNTAMSEVAIATHKRYLGRPELLTGIQSAWIKSLLTVWGESQRGEVYPRKPTSHSCWWSVKGERWSDKALERFTAAIEQARAEGFRGPNALKRAQVILWPKQESSLIDTAISNDDAEFMEKCVLDAFEVTDPIYIVGMSYYTTRKKISDITRELQKLAPWLTSDQSRERVKWCLKIFQGKAFLAARKNLRS

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Crispr_ID: NZ_CP028787_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028787_2

4153148-4153276

Orphan

Consensus_repeat	Method
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028787_2

>merge|NZ_CP028787|2|4153148-4153276|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

>NZ_CP028787|2|2|4153148-4153276|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028787.1\|WP_004177332.1\|4146539_4146938_-\|Crl-family-RNA-polymerase-assembly-factor	unknown	unknown	gnl\|CDD\|182882
NZ_CP028787.1\|WP_004177334.1\|4152231_4153092_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
NZ_CP028787.1\|WP_002889696.1\|4160497_4161265_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP028787.1\|WP_002889795.1\|4144315_4145716_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
NZ_CP028787.1\|WP_002889702.1\|4158031_4159375_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_CP028787.1\|WP_002889722.1\|4153314_4153530_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP028787.1\|WP_002889720.1\|4153532_4154756_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP028787.1\|WP_060656910.1\|4155371_4156010_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP028787.1\|WP_002889733.1\|4148345_4148804_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP028787.1\|WP_032416706.1\|4142882_4144166_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
NZ_CP028787.1\|WP_004177331.1\|4145761_4146454_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
NZ_CP028787.1\|WP_004177335.1\|4154768_4155365_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP028787.1\|WP_004152033.1\|4149061_4150519_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP028787.1\|WP_002889742.1\|4146995_4148240_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP028787.1\|WP_002889699.1\|4159786_4160527_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP028787.1\|WP_004191881.1\|4159331_4159541_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_002889726.1\|4151016_4152072_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP028787.1\|WP_060612934.1\|4156789_4158028_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP028787.1\|WP_002889727.1\|4150561_4151014_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP028787.1\|WP_004191877.1\|4156002_4156797_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	unknown	unknown	gnl\|CDD\|235423

Protein	Function_ID	Function_description	E-value
NZ_CP028787.1\|WP_004177332.1\|4146539_4146938_-\|Crl-family-RNA-polymerase-assembly-factor	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
NZ_CP028787.1\|WP_004177334.1\|4152231_4153092_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	1.90819e-128
NZ_CP028787.1\|WP_002889696.1\|4160497_4161265_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
NZ_CP028787.1\|WP_002889795.1\|4144315_4145716_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
NZ_CP028787.1\|WP_002889702.1\|4158031_4159375_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_CP028787.1\|WP_002889722.1\|4153314_4153530_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
NZ_CP028787.1\|WP_002889720.1\|4153532_4154756_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP028787.1\|WP_060656910.1\|4155371_4156010_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	9.27315e-142
NZ_CP028787.1\|WP_002889733.1\|4148345_4148804_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_CP028787.1\|WP_032416706.1\|4142882_4144166_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP028787.1\|WP_004177331.1\|4145761_4146454_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	3.98097e-151
NZ_CP028787.1\|WP_004177335.1\|4154768_4155365_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_CP028787.1\|WP_004152033.1\|4149061_4150519_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP028787.1\|WP_002889742.1\|4146995_4148240_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP028787.1\|WP_002889699.1\|4159786_4160527_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
NZ_CP028787.1\|WP_002889726.1\|4151016_4152072_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP028787.1\|WP_060612934.1\|4156789_4158028_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP028787.1\|WP_002889727.1\|4150561_4151014_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
NZ_CP028787.1\|WP_004191877.1\|4156002_4156797_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.16359e-153

>NZ_CP028787.1|WP_004177334.1|4152231_4153092_+|glycerophosphoryl-diester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRMAIELGADGVMVDSPAQAKSWQ
>NZ_CP028787.1|WP_002889726.1|4151016_4152072_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_CP028787.1|WP_002889727.1|4150561_4151014_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>NZ_CP028787.1|WP_004152033.1|4149061_4150519_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP028787.1|WP_002889733.1|4148345_4148804_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_CP028787.1|WP_002889742.1|4146995_4148240_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_CP028787.1|WP_004177332.1|4146539_4146938_-|Crl-family-RNA-polymerase-assembly-factor
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_CP028787.1|WP_004177331.1|4145761_4146454_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARTHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>NZ_CP028787.1|WP_002889795.1|4144315_4145716_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>NZ_CP028787.1|WP_032416706.1|4142882_4144166_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNRAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>NZ_CP028787.1|WP_002889722.1|4153314_4153530_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_CP028787.1|WP_002889720.1|4153532_4154756_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP028787.1|WP_004177335.1|4154768_4155365_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_CP028787.1|WP_060656910.1|4155371_4156010_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDIKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_CP028787.1|WP_004191877.1|4156002_4156797_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPDMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_CP028787.1|WP_060612934.1|4156789_4158028_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGTEQLQQTIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_CP028787.1|WP_002889702.1|4158031_4159375_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_CP028787.1|WP_004191881.1|4159331_4159541_+|hypothetical-protein
MPAMGKSSPFVILIISLAGIRNLNPDAGQGQLIDRMAEKKGRNGASSAQDGREASFLTLMMNRRKCNIS
>NZ_CP028787.1|WP_002889699.1|4159786_4160527_+|transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_CP028787.1|WP_002889696.1|4160497_4161265_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV

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Crispr_ID: NZ_CP028787_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028787_3

4370115-4370209

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028787_3

>merge|NZ_CP028787|3|4370115-4370209|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP028787|3|3|4370115-4370209|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028787.1\|WP_002888324.1\|4378448_4379270_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
NZ_CP028787.1\|WP_002888353.1\|4360873_4361569_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP028787.1\|WP_004147026.1\|4373767_4376116_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP028787.1\|WP_058229150.1\|4367942_4368482_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP028787.1\|WP_002888329.1\|4376170_4377457_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP028787.1\|WP_002888323.1\|4379272_4379650_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP028787.1\|WP_004145972.1\|4356330_4357176_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP028787.1\|WP_060612592.1\|4361744_4364102_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP028787.1\|WP_002888340.1\|4370350_4371976_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP028787.1\|WP_004177424.1\|4359233_4360736_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP028787.1\|WP_032409076.1\|4368444_4368633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028787.1\|WP_060612588.1\|4357513_4359223_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP028787.1\|WP_002888345.1\|4368661_4370026_-\|citrate/acetate-antiporter	unknown	unknown	gnl\|CDD\|377030
NZ_CP028787.1\|WP_002888320.1\|4380754_4381234_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP028787.1\|WP_004145980.1\|4367208_4367868_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP028787.1\|WP_023343000.1\|4377462_4378452_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP028787.1\|WP_002888321.1\|4379654_4380503_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP028787.1\|WP_032424064.1\|4371965_4372664_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP028787.1\|WP_004178574.1\|4364289_4367196_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP028787.1\|WP_002888332.1\|4372696_4373524_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512

Protein	Function_ID	Function_description	E-value
NZ_CP028787.1\|WP_002888324.1\|4378448_4379270_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP028787.1\|WP_002888353.1\|4360873_4361569_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP028787.1\|WP_004147026.1\|4373767_4376116_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP028787.1\|WP_058229150.1\|4367942_4368482_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	1.45487e-85
NZ_CP028787.1\|WP_002888329.1\|4376170_4377457_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP028787.1\|WP_002888323.1\|4379272_4379650_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP028787.1\|WP_004145972.1\|4356330_4357176_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP028787.1\|WP_060612592.1\|4361744_4364102_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP028787.1\|WP_002888340.1\|4370350_4371976_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP028787.1\|WP_032424064.1\|4371965_4372664_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.50146e-66
NZ_CP028787.1\|WP_004145980.1\|4367208_4367868_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
NZ_CP028787.1\|WP_004177424.1\|4359233_4360736_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP028787.1\|WP_002888345.1\|4368661_4370026_-\|citrate/acetate-antiporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP028787.1\|WP_002888320.1\|4380754_4381234_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP028787.1\|WP_060612588.1\|4357513_4359223_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP028787.1\|WP_023343000.1\|4377462_4378452_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP028787.1\|WP_002888321.1\|4379654_4380503_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP028787.1\|WP_004178574.1\|4364289_4367196_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP028787.1\|WP_002888332.1\|4372696_4373524_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164

>NZ_CP028787.1|WP_002888345.1|4368661_4370026_-|citrate/acetate-antiporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP028787.1|WP_032409076.1|4368444_4368633_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKCDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>NZ_CP028787.1|WP_058229150.1|4367942_4368482_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVNIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP028787.1|WP_004145980.1|4367208_4367868_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP028787.1|WP_004178574.1|4364289_4367196_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP028787.1|WP_060612592.1|4361744_4364102_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFNASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPADYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP028787.1|WP_002888353.1|4360873_4361569_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP028787.1|WP_004177424.1|4359233_4360736_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP028787.1|WP_060612588.1|4357513_4359223_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGIYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP028787.1|WP_004145972.1|4356330_4357176_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP028787.1|WP_002888340.1|4370350_4371976_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP028787.1|WP_032424064.1|4371965_4372664_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHTTPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP028787.1|WP_002888332.1|4372696_4373524_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP028787.1|WP_004147026.1|4373767_4376116_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP028787.1|WP_002888329.1|4376170_4377457_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP028787.1|WP_023343000.1|4377462_4378452_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP028787.1|WP_002888324.1|4378448_4379270_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP028787.1|WP_002888323.1|4379272_4379650_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP028787.1|WP_002888321.1|4379654_4380503_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP028787.1|WP_002888320.1|4380754_4381234_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028787_1	1.1\|1880161\|30\|NZ_CP028787\|CRISPRCasFinder	1880161-1880190	30	NZ_CP022925	Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01B	21741-21770	0	1.0

1. spacer 1.1|1880161|30|NZ_CP028787|CRISPRCasFinder matches to NZ_CP022925 (Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01B) position: , mismatch: 0, identity: 1.0

gcattcggcataaacgccatatccaggatt	CRISPR spacer
gcattcggcataaacgccatatccaggatt	Protospacer
******************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1191359 : 1200806

Enterobacteria_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048988794.1\|1191359_1193693_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.4
WP_048988792.1\|1193707_1194028_-	hypothetical protein	NA	NA	NA	NA
WP_021536582.1\|1194024_1194252_-	hypothetical protein	NA	NA	NA	NA
WP_077260242.1\|1194248_1194800_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.0e-33	70.4
WP_048988789.1\|1195612_1196350_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	6.9e-81	66.1
WP_048988787.1\|1196346_1196592_+	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-31	77.8
WP_048988786.1\|1196608_1197175_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-56	63.8
WP_101986838.1\|1197216_1197324_-	acetyl xylan esterase	NA	NA	NA	NA
WP_064152055.1\|1197689_1199582_+	hypothetical protein	NA	NA	NA	NA
WP_048986916.1\|1199618_1200806_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.4e-107	51.0

DBSCAN-SWA_2

1317111 : 1384055

Salmonella_phage(32.08%)

protease,integrase,tail,transposase,holin,terminase

attL 1318106:1318123|attR 1386802:1386819

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151980.1\|1317111_1318578_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
1318106:1318123	attL	NA	NA	NA	NA
WP_004151979.1\|1318645_1320223_+	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
WP_064151765.1\|1320414_1321665_+\|integrase	site-specific integrase	A0A1X9TCT6	Enterobacter_phage	6.8e-206	85.1
WP_064151764.1\|1321681_1321873_-	hypothetical protein	NA	NA	NA	NA
WP_064106736.1\|1321869_1322463_-	adenine methylase	T1SA14	Salmonella_phage	3.7e-109	91.4
WP_071556204.1\|1322459_1322618_-	DUF1317 domain-containing protein	T1SAR0	Salmonella_phage	5.1e-18	80.8
WP_023339275.1\|1322610_1322904_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	71.1
WP_004144294.1\|1323013_1323262_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_064106735.1\|1323310_1324192_-	recombinase RecT	T1SBJ5	Salmonella_phage	6.8e-136	84.3
WP_064151763.1\|1324188_1325010_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	6.2e-131	80.6
WP_064151762.1\|1325009_1325294_-	hypothetical protein	B5WZV1	Pseudomonas_phage	2.4e-10	44.0
WP_032439434.1\|1325290_1325590_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	4.7e-20	54.5
WP_077266622.1\|1325597_1326629_-	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	3.6e-35	51.4
WP_048264076.1\|1327029_1327611_-	XRE family transcriptional regulator	Q858D7	Salmonella_phage	2.1e-64	64.3
WP_004152538.1\|1327764_1327998_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_064151760.1\|1328144_1328354_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.4e-26	78.3
WP_040025502.1\|1328353_1329115_+	primosomal protein	A0A193GZ86	Enterobacter_phage	1.6e-136	90.2
WP_032418532.1\|1329111_1329897_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_064151759.1\|1330016_1330364_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.7e-50	83.5
WP_064151780.1\|1330556_1331096_+	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-08	41.9
WP_064151758.1\|1331372_1332134_+	addiction module toxin RelE	C6ZR30	Salmonella_phage	6.8e-07	65.2
WP_064151757.1\|1332130_1332310_+	hypothetical protein	NA	NA	NA	NA
WP_064151756.1\|1332306_1333050_+	hypothetical protein	K7P7E4	Enterobacteria_phage	3.3e-14	56.6
WP_064151755.1\|1333134_1333374_+	hypothetical protein	G8C7S3	Escherichia_phage	1.9e-08	51.7
WP_064151754.1\|1333373_1333610_+	hypothetical protein	NA	NA	NA	NA
WP_064151753.1\|1333602_1333941_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.9e-49	88.2
WP_064151779.1\|1334015_1334273_+	hypothetical protein	NA	NA	NA	NA
WP_064151752.1\|1334350_1334935_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.3e-90	89.1
WP_064151751.1\|1334931_1336407_+	hypothetical protein	Q858H3	Salmonella_phage	1.9e-279	92.5
WP_064151750.1\|1336418_1336691_-	hypothetical protein	NA	NA	NA	NA
WP_064151749.1\|1336776_1337142_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	5.1e-61	95.9
WP_072310953.1\|1337633_1337822_+	hypothetical protein	NA	NA	NA	NA
WP_004141368.1\|1337841_1338048_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_064151748.1\|1338062_1339745_+\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	2.5e-264	84.4
WP_042632452.1\|1339741_1340038_+	hypothetical protein	T1SBI9	Salmonella_phage	9.6e-34	70.4
WP_064151747.1\|1340040_1340730_+	peptidase	G9L6C4	Escherichia_phage	2.9e-65	69.6
WP_064151746.1\|1340744_1341731_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	3.3e-179	93.6
WP_020953461.1\|1341784_1342222_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
WP_064151745.1\|1342232_1342574_+	hypothetical protein	G9L6C7	Escherichia_phage	1.1e-36	71.9
WP_004152441.1\|1342624_1342948_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
WP_064151744.1\|1342947_1343553_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	3.3e-89	79.0
WP_064151743.1\|1343552_1346030_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.2
WP_004152438.1\|1346029_1346494_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
WP_064151742.1\|1346493_1347033_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	3.0e-70	79.4
WP_064151741.1\|1347043_1349857_+	hypothetical protein	T1SBJ1	Salmonella_phage	0.0e+00	93.3
WP_064151740.1\|1349853_1351659_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	1.7e-237	73.3
WP_064106698.1\|1351662_1354137_+	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	87.0
WP_004200533.1\|1354335_1354632_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	4.4e-47	94.8
WP_072310952.1\|1354666_1354819_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	3.3e-14	83.7
WP_023301611.1\|1354917_1355178_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	2.1e-24	64.0
WP_000343760.1\|1355277_1356498_+\|transposase	ISL3 family transposase ISKox3	NA	NA	NA	NA
WP_064151739.1\|1359046_1359295_+	hypothetical protein	NA	NA	NA	NA
WP_064151738.1\|1359630_1360035_+	hypothetical protein	T1SA79	Salmonella_phage	9.3e-56	84.1
WP_064151737.1\|1360021_1360327_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	7.8e-39	80.4
WP_048293150.1\|1360316_1360946_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	8.1e-91	77.4
WP_064151736.1\|1360942_1361425_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	4.1e-58	77.5
WP_009309501.1\|1361644_1363513_-	phosphatase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_038435576.1\|1363496_1364675_-	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_064151735.1\|1364968_1366201_-	MFS transporter	NA	NA	NA	NA
WP_023282901.1\|1366298_1367186_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002913843.1\|1367282_1367474_-	DUF2633 domain-containing protein	G9L6F2	Escherichia_phage	3.3e-19	79.3
WP_002913839.1\|1370107_1371640_-	exopolyphosphatase	NA	NA	NA	NA
WP_002913838.1\|1371643_1373704_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_004145656.1\|1373884_1374526_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	9.0e-29	41.1
WP_064151734.1\|1374522_1375560_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
WP_002913833.1\|1375823_1376717_+	beta-glucoside kinase	NA	NA	NA	NA
WP_060611634.1\|1376726_1378160_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002913827.1\|1378377_1379004_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002913824.1\|1379099_1380386_+	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_020947395.1\|1380484_1381186_+	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913812.1\|1381182_1382094_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
WP_009309510.1\|1382222_1382582_-	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_002913807.1\|1382591_1384055_-\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
1386802:1386819	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1702833 : 1709740

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064151778.1\|1702833_1703697_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-09	27.0
WP_004899467.1\|1703707_1704481_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_002912636.1\|1704723_1705617_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1705862_1707224_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004201558.1\|1707542_1708265_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_101986831.1\|1708261_1709740_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	5.0e-30	28.3

DBSCAN-SWA_4

1751304 : 1761206

Escherichia_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015958700.1\|1751304_1752711_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	1.6e-38	28.9
WP_015958698.1\|1752952_1754017_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.4e-104	54.1
WP_060611727.1\|1754043_1754913_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.5e-111	67.0
WP_004189149.1\|1754944_1755835_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
WP_021313307.1\|1755849_1756404_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_004152483.1\|1756584_1757751_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
WP_004149013.1\|1758695_1759700_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.0e-31	29.5
WP_000019445.1\|1760225_1761206_+\|transposase	IS5 family transposase ISKpn26	A0A077SK28	Escherichia_phage	1.0e-185	99.4

DBSCAN-SWA_5

1866442 : 1905728

Enterobacteria_phage(23.91%)

protease,tail,tRNA,holin,capsid,terminase,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151452.1\|1866442_1868176_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.4e-87	33.8
WP_002911491.1\|1868411_1868981_+	VOC family protein	NA	NA	NA	NA
WP_072310871.1\|1869057_1869801_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_004151451.1\|1869882_1870887_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_004184666.1\|1870883_1871627_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.0
WP_002911484.1\|1871666_1872062_-	membrane protein	NA	NA	NA	NA
WP_072310872.1\|1872114_1872894_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.1e-60	82.7
WP_072310873.1\|1872890_1874150_-	DUF3596 domain-containing protein	A0A286S1S8	Klebsiella_phage	2.1e-223	90.2
WP_072310874.1\|1874192_1874438_-	excisionase	A0A286S2A4	Klebsiella_phage	1.4e-35	92.1
WP_072310875.1\|1874571_1874865_-	hypothetical protein	A0A1U8QJU8	Salmonella_virus	9.8e-23	58.3
WP_072310876.1\|1874861_1875509_-	hypothetical protein	R9VWB9	Serratia_phage	5.1e-56	52.6
WP_072310877.1\|1875501_1875846_-	hypothetical protein	NA	NA	NA	NA
WP_023312753.1\|1875842_1876067_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.5e-18	60.8
WP_077271814.1\|1876063_1876291_-	hypothetical protein	A0A291LBA3	Klebsiella_phage	8.1e-09	46.8
WP_048293368.1\|1876592_1876886_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_101986833.1\|1877076_1877265_-	hypothetical protein	NA	NA	NA	NA
WP_072310878.1\|1877938_1878571_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	6.4e-35	36.9
WP_032428570.1\|1878669_1878891_+	transcriptional regulator	Q716D6	Shigella_phage	8.2e-14	55.7
WP_004196543.1\|1878930_1879251_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	5.0e-36	68.9
WP_072310879.1\|1879446_1879701_+	hypothetical protein	NA	NA	NA	NA
WP_072310880.1\|1879697_1880747_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	2.7e-30	51.5
WP_072310881.1\|1880773_1881169_+	hypothetical protein	NA	NA	NA	NA
WP_072310882.1\|1881168_1881390_+	hypothetical protein	NA	NA	NA	NA
WP_072310883.1\|1881382_1882174_+	hypothetical protein	A4JX52	Burkholderia_virus	5.3e-63	51.7
WP_064151809.1\|1882166_1882799_+	hypothetical protein	K7PJQ4	Enterobacteria_phage	9.0e-05	40.2
WP_072310884.1\|1882962_1883562_+	DUF551 domain-containing protein	G9L6B4	Escherichia_phage	2.7e-19	59.5
WP_072310898.1\|1883561_1883750_+	hypothetical protein	R9TNE4	Aeromonas_phage	4.7e-18	72.9
WP_004196547.1\|1883822_1884092_+	hypothetical protein	H6WRY4	Salmonella_phage	3.5e-35	80.7
WP_072310885.1\|1884333_1884642_+	DUF968 domain-containing protein	Q6V7S4	Burkholderia_virus	1.6e-23	57.6
WP_072310886.1\|1884634_1885279_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.6e-102	81.0
WP_072310887.1\|1885275_1885875_+	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-65	58.4
WP_012542609.1\|1886577_1886847_+\|holin	holin	K7P6H9	Enterobacteria_phage	2.8e-32	78.3
WP_032425642.1\|1886824_1887322_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	9.6e-79	83.6
WP_072310888.1\|1887318_1887708_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	1.5e-23	50.0
WP_100757141.1\|1887700_1887850_+	Rz1 lytic protein	S5FXQ4	Shigella_phage	1.1e-09	71.4
WP_072310890.1\|1887973_1888294_+	hypothetical protein	NA	NA	NA	NA
WP_072310891.1\|1888296_1888647_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	1.2e-51	80.2
WP_032408649.1\|1888804_1889302_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	1.1e-61	72.1
WP_032408650.1\|1889301_1891059_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	91.1
WP_032408651.1\|1891069_1891255_+	hypothetical protein	Q8HAD5	Salmonella_phage	6.2e-15	61.7
WP_032408652.1\|1891254_1892484_+\|portal	phage portal protein	U5P411	Shigella_phage	8.2e-204	82.4
WP_032408653.1\|1892470_1893124_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	7.1e-106	87.9
WP_004884302.1\|1893138_1894347_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	2.2e-193	84.8
WP_023302596.1\|1894385_1894589_+	hypothetical protein	M1FN89	Enterobacteria_phage	2.3e-07	42.4
WP_032408654.1\|1894585_1894906_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.7e-15	39.8
WP_032408655.1\|1894914_1895253_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.4e-41	74.1
WP_032408656.1\|1895249_1895699_+	hypothetical protein	Q9MCS9	Enterobacteria_phage	9.7e-62	81.9
WP_032408657.1\|1895695_1896043_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	8.0e-32	62.8
WP_023313062.1\|1896099_1896804_+	hypothetical protein	K7PHL2	Enterobacterial_phage	5.5e-80	66.9
WP_021313622.1\|1896834_1897239_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	8.5e-33	57.7
WP_004177139.1\|1897241_1897547_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_016530182.1\|1897620_1897854_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_064154244.1\|1897914_1901301_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.5e-303	57.9
WP_021313619.1\|1901321_1901795_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.6e-54	61.4
WP_021313618.1\|1901781_1902267_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.0e-53	66.2
WP_021313617.1\|1902276_1902657_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	2.1e-57	80.2
WP_072310892.1\|1902653_1905728_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	70.6

DBSCAN-SWA_6

2709328 : 2720216

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064151569.1\|2709328_2712436_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_064152923.1\|2713786_2714875_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	2.0e-209	99.4
WP_004176262.1\|2714961_2715222_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_011117369.1\|2715519_2716380_+	class A extended-spectrum beta-lactamase SHV-5	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_002210513.1\|2716400_2717162_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|2717152_2717386_+	hypothetical protein	NA	NA	NA	NA
WP_108468062.1\|2717423_2718326_+	oxidoreductase	A0A077SLF7	Escherichia_phage	1.4e-157	98.7
WP_064152921.1\|2718337_2719603_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.5e-232	99.0
WP_002210516.1\|2719595_2720216_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3104613 : 3187326

Klebsiella_phage(43.48%)

integrase,tail,tRNA,capsid,holin,terminase,head,portal

attL 3131428:3131442|attR 3185137:3185151

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3104613_3105114_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3105230_3105677_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901073.1\|3105660_3106452_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004148041.1\|3106553_3107738_+	cyanate MFS transporter	NA	NA	NA	NA
WP_064151934.1\|3107769_3108462_-	hypothetical protein	NA	NA	NA	NA
WP_004150778.1\|3108607_3109117_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004150779.1\|3109103_3109460_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004179368.1\|3109449_3109689_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_064151935.1\|3109990_3111004_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.7e-13	29.5
WP_004150782.1\|3111061_3111163_+	hypothetical protein	NA	NA	NA	NA
WP_004213093.1\|3111162_3111237_+	membrane protein	NA	NA	NA	NA
WP_004140488.1\|3111354_3111480_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3111539_3111803_-	DUF2534 domain-containing protein	NA	NA	NA	NA
WP_004150783.1\|3111933_3112572_-	leucine efflux protein	NA	NA	NA	NA
WP_072310971.1\|3112661_3113576_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.5e-72	50.4
WP_071528194.1\|3113791_3113983_+	hypothetical protein	NA	NA	NA	NA
WP_064151937.1\|3114237_3115281_-	type II asparaginase	NA	NA	NA	NA
WP_064151938.1\|3115583_3116792_+	HD domain-containing protein	NA	NA	NA	NA
WP_064151939.1\|3116864_3118649_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.4e-17	38.5
WP_004150788.1\|3118655_3119546_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3119666_3121175_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150790.1\|3121485_3122172_-	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_004140501.1\|3122569_3122749_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3122788_3123421_-	DNA-binding protein	NA	NA	NA	NA
WP_064151940.1\|3123987_3124185_+	hypothetical protein	NA	NA	NA	NA
WP_004140509.1\|3124300_3125311_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_064151941.1\|3125307_3126714_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004179357.1\|3126769_3127657_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3127673_3128180_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|3128206_3128701_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3128791_3128977_-	hypothetical protein	NA	NA	NA	NA
WP_021462619.1\|3129598_3130792_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3130904_3131132_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004140532.1\|3131152_3131338_-	hypothetical protein	NA	NA	NA	NA
3131428:3131442	attL	NA	NA	NA	NA
WP_004150797.1\|3131581_3131905_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3131897_3132290_+	amino acid-binding protein	NA	NA	NA	NA
WP_004892950.1\|3132286_3133000_+	ArsR family transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3133272_3133425_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_048276852.1\|3133578_3135075_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	2.5e-138	69.6
WP_101986843.1\|3135136_3146353_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	50.5
WP_048276850.1\|3146415_3147009_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.8e-79	77.2
WP_025368256.1\|3147035_3147458_-	hypothetical protein	J9Q806	Salmonella_phage	2.9e-28	49.3
WP_032439857.1\|3147499_3148210_-	peptidase P60	Q6UAW4	Klebsiella_phage	3.8e-137	91.1
WP_048276849.1\|3148211_3148967_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	1.4e-124	80.5
WP_048276848.1\|3148963_3149302_-\|tail	minor tail family protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
WP_101986842.1\|3149301_3152658_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.8
WP_071603425.1\|3152657_3152870_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.7e-32	88.9
WP_014228914.1\|3152890_3153256_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_014228913.1\|3153313_3153775_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_021462608.1\|3153806_3154208_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.1e-61	93.2
WP_048263894.1\|3154204_3154594_-	hypothetical protein	Q6UAX2	Klebsiella_phage	4.0e-56	84.5
WP_014228910.1\|3154574_3154913_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_020317538.1\|3154909_3155227_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_014907814.1\|3155207_3155468_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
WP_048276847.1\|3155526_3156813_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	5.7e-216	89.3
WP_048276846.1\|3156890_3157811_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	1.6e-148	88.2
WP_048276845.1\|3157847_3159107_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.3e-222	89.8
WP_017898992.1\|3159106_3159286_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_048276844.1\|3159279_3161001_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.9e-190	57.4
WP_012542168.1\|3161000_3161435_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_017898991.1\|3161684_3162116_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.3
WP_014228902.1\|3162112_3162430_-	hypothetical protein	NA	NA	NA	NA
WP_017898990.1\|3162381_3162744_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.4e-57	81.7
WP_017898989.1\|3162897_3163119_-	hypothetical protein	NA	NA	NA	NA
WP_017898988.1\|3163225_3163414_-	hypothetical protein	NA	NA	NA	NA
WP_017898986.1\|3164493_3164844_-	hypothetical protein	R9TPM9	Aeromonas_phage	1.8e-10	39.8
WP_023279523.1\|3164840_3165338_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.9e-79	85.8
WP_017880269.1\|3165337_3165553_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
WP_023342896.1\|3166976_3167579_-	hypothetical protein	H9C175	Pectobacterium_phage	2.4e-76	68.1
WP_048276843.1\|3167595_3168627_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	6.2e-96	49.6
WP_032735234.1\|3168626_3168830_-	hypothetical protein	NA	NA	NA	NA
WP_048276842.1\|3168826_3169219_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	1.0e-11	36.6
WP_077260543.1\|3169259_3169550_-	hypothetical protein	H6WRY6	Salmonella_phage	1.4e-16	56.9
WP_023279529.1\|3169561_3169795_-	DinI family protein	K7PM44	Enterobacteria_phage	1.3e-25	72.4
WP_048276841.1\|3170420_3171398_+	thymidylate synthase	A0A1G5SB41	Enterococcus_phage	1.1e-22	31.5
WP_040240580.1\|3171397_3172342_+	hypothetical protein	NA	NA	NA	NA
WP_048276840.1\|3172344_3173427_-	ImmA/IrrE family metallo-endopeptidase	A0A075BTZ7	Microcystis_phage	2.1e-09	38.6
WP_040240584.1\|3173423_3173750_-	hypothetical protein	NA	NA	NA	NA
WP_040240587.1\|3173895_3174162_+	hypothetical protein	A0A2C9CX56	Yersinia_phage	8.6e-26	70.7
WP_055314468.1\|3174162_3174414_-	hypothetical protein	NA	NA	NA	NA
WP_048276838.1\|3175109_3175550_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_040240646.1\|3175563_3176028_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.7e-61	68.9
WP_040240595.1\|3176020_3177004_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	2.4e-44	55.8
WP_014907826.1\|3177055_3177610_-	hypothetical protein	NA	NA	NA	NA
WP_012542199.1\|3177612_3177828_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
WP_012542200.1\|3177929_3178319_+	transcriptional regulator	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
WP_099184350.1\|3178933_3179152_+	hypothetical protein	NA	NA	NA	NA
WP_021462581.1\|3179161_3179356_+	DUF1482 domain-containing protein	NA	NA	NA	NA
WP_021462580.1\|3179398_3179743_+	transcriptional regulator	NA	NA	NA	NA
WP_048276837.1\|3179884_3182023_+	exonuclease	S4TNL0	Salmonella_phage	1.9e-99	42.9
WP_012542206.1\|3182075_3182321_+	excisionase	NA	NA	NA	NA
WP_014228877.1\|3182301_3183429_+\|integrase	integrase	O21925	Phage_21	3.3e-119	58.4
WP_004150800.1\|3183546_3184797_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004150801.1\|3185037_3185688_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3185137:3185151	attR	NA	NA	NA	NA
WP_064151971.1\|3185704_3186163_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3186219_3187326_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_8

3424308 : 3433772

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209699.1\|3424308_3426030_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3426074_3426776_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3427129_3427348_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3427468_3429748_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3429778_3430096_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3430421_3430643_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_071528213.1\|3430597_3430780_-	hypothetical protein	NA	NA	NA	NA
WP_064152930.1\|3430719_3432660_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	7.2e-37	40.5
WP_004191152.1\|3432656_3433772_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_9

4610646 : 4622678

Enterobacteria_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060612411.1\|4610646_4611912_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.8e-80	40.3
WP_064152983.1\|4612654_4614988_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.7
WP_064152984.1\|4615001_4615322_-	hypothetical protein	NA	NA	NA	NA
WP_064152985.1\|4615318_4615546_-	hypothetical protein	NA	NA	NA	NA
WP_077265947.1\|4615542_4616094_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.9e-31	66.7
WP_064152986.1\|4616917_4617655_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.9e-70	60.1
WP_023339332.1\|4617651_4617897_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.0e-20	59.3
WP_064152987.1\|4617914_4618481_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.9e-60	64.9
WP_077265948.1\|4618546_4618762_+	hypothetical protein	NA	NA	NA	NA
WP_072310911.1\|4618877_4621286_-	hypothetical protein	NA	NA	NA	NA
WP_071556222.1\|4621406_4622678_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.1e-73	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028784

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3654 : 61239

uncultured_Caudovirales_phage(31.25%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000019441.1\|3654_4635_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.3e-185	99.1
WP_080895248.1\|4954_6391_+	diguanylate cyclase	NA	NA	NA	NA
WP_004152070.1\|7373_8651_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_004152071.1\|8713_10717_-\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_085955172.1\|11750_12958_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178091.1\|14386_14818_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|15068_16544_-	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|16536_17217_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|17406_18792_+	hypothetical protein	NA	NA	NA	NA
WP_001246153.1\|18820_19174_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152079.1\|19287_20580_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004098958.1\|20590_23737_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_000758228.1\|23823_24264_+	hypothetical protein	NA	NA	NA	NA
WP_004098955.1\|24390_26838_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000843497.1\|26878_27076_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|27109_27847_-	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|28135_28585_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|28818_30636_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|30635_31532_+	copper resistance protein B	NA	NA	NA	NA
WP_000025662.1\|31571_31952_+	copper resistance system chaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|31956_32886_+	copper resistance protein D	NA	NA	NA	NA
WP_001188930.1\|32940_33621_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004152084.1\|33617_35018_+	sensor histidine kinase	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_004152085.1\|35234_35669_+	hypothetical protein	NA	NA	NA	NA
WP_004152086.1\|35900_36080_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_031944101.1\|37822_38332_+	major intrinsic protein MIP	NA	NA	NA	NA
WP_004152091.1\|38381_38879_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152092.1\|39210_39537_+	transcriptional regulator	NA	NA	NA	NA
WP_085903505.1\|39536_40247_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_064152264.1\|40255_40801_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_004152095.1\|40876_41239_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
WP_004152096.1\|43135_43672_+	N-acetyltransferase	NA	NA	NA	NA
WP_004152097.1\|43704_44130_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152098.1\|44142_45432_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152099.1\|45479_47231_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_004152100.1\|47248_47611_-	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
WP_004152101.1\|47660_48011_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152102.1\|48368_48638_+	hypothetical protein	NA	NA	NA	NA
WP_004152103.1\|48625_49201_+	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|49231_49726_+	DNA-binding protein	NA	NA	NA	NA
WP_004152105.1\|49769_50138_+	hypothetical protein	NA	NA	NA	NA
WP_004152106.1\|50171_50375_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152107.1\|50423_50681_+	hypothetical protein	NA	NA	NA	NA
WP_074441504.1\|50710_50899_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|50897_51878_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_108468061.1\|51859_52042_+	hypothetical protein	NA	NA	NA	NA
WP_095849283.1\|51962_52211_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|52386_52653_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|52640_53123_+	N-acetyltransferase	NA	NA	NA	NA
WP_001567368.1\|53323_54727_+\|transposase	ISNCY family transposase ISKpn21	NA	NA	NA	NA
WP_001567369.1\|54755_55388_-	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|55606_57010_+\|transposase	ISNCY family transposase ISKpn21	NA	NA	NA	NA
WP_001567369.1\|57038_57671_-	hypothetical protein	NA	NA	NA	NA
WP_020314316.1\|57900_59247_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_001067855.1\|60534_61239_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

83636 : 117740

Bacillus_virus(16.67%)

bacteriocin,integrase,transposase

attL 79986:80003|attR 120772:120789

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
79986:80003	attL	NA	NA	NA	NA
WP_004118231.1\|83636_83804_-\|integrase	integrase	NA	NA	NA	NA
WP_004118235.1\|84906_85428_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_004118237.1\|85424_86378_+	fec operon regulator FecR	NA	NA	NA	NA
WP_004152280.1\|86463_88788_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_004118241.1\|88832_89735_+	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004118243.1\|89731_90730_+	iron-dicitrate transporter permease FecC	NA	NA	NA	NA
WP_004152281.1\|90726_91683_+	Fe3+ dicitrate ABC transporter permease	NA	NA	NA	NA
WP_004152282.1\|91683_92451_+	iron-dicitrate ABC transporter ATP-binding subunit	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004118251.1\|92549_92843_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_071527925.1\|93173_93416_-	diguanylate phosphodiesterase	NA	NA	NA	NA
WP_000427614.1\|93713_94718_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_004152284.1\|95121_96132_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_004152285.1\|96154_96370_-	hypothetical protein	NA	NA	NA	NA
WP_004152286.1\|96592_97675_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	6.8e-186	96.4
WP_004152287.1\|97796_100871_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
WP_003846917.1\|100922_102176_+	MFS transporter	NA	NA	NA	NA
WP_101986848.1\|102312_103236_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	1.4e-176	99.7
WP_004152290.1\|103880_106190_+	ATPase	NA	NA	NA	NA
WP_004152291.1\|106193_107510_+	ATPase AAA	NA	NA	NA	NA
WP_000093087.1\|107506_109702_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_009486390.1\|110323_110512_+	hypothetical protein	NA	NA	NA	NA
WP_024940886.1\|110655_110844_+	hypothetical protein	NA	NA	NA	NA
WP_004152292.1\|111148_112006_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_004171457.1\|111998_112076_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_004199332.1\|112292_112571_-	replication protein	NA	NA	NA	NA
WP_004152294.1\|112891_113443_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.1e-19	35.2
WP_004152296.1\|113711_113990_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_004178051.1\|113991_116313_-\|bacteriocin	klebicin B-related nuclease bacteriocin	NA	NA	NA	NA
WP_000343760.1\|116519_117740_+\|transposase	ISL3 family transposase ISKox3	NA	NA	NA	NA
120772:120789	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP028786

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 49428

Escherichia_phage(42.86%)

coat,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015056392.1\|1215_2745_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_017480460.1\|2705_2900_-	hypothetical protein	NA	NA	NA	NA
WP_032723058.1\|2955_3231_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|3260_3965_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071538079.1\|3955_4138_+	hypothetical protein	NA	NA	NA	NA
WP_002904004.1\|4101_4962_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|4982_5744_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|5734_5968_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|6584_7289_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004199403.1\|7322_7679_-	hypothetical protein	A0A222YZE2	Escherichia_phage	5.5e-20	46.6
WP_001549892.1\|7681_7921_-	hypothetical protein	I6PD82	Cronobacter_phage	4.4e-21	55.1
WP_000343760.1\|8022_9243_+\|transposase	ISL3 family transposase ISKox3	NA	NA	NA	NA
WP_001549893.1\|9331_9994_-	hypothetical protein	M9Q1K0	Clostridium_phage	9.7e-10	29.1
WP_000516402.1\|10374_11037_+	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2
WP_001185481.1\|11136_11421_+	hypothetical protein	NA	NA	NA	NA
WP_000469598.1\|11626_11938_+	hypothetical protein	NA	NA	NA	NA
WP_001043731.1\|11973_12258_+	hypothetical protein	NA	NA	NA	NA
WP_000877224.1\|12278_12632_-	hypothetical protein	NA	NA	NA	NA
WP_001074369.1\|12819_13263_-	hypothetical protein	NA	NA	NA	NA
WP_001348704.1\|13271_14285_-	replication initiation protein	NA	NA	NA	NA
WP_001025390.1\|15637_16153_+	molecular chaperone DnaJ	A0A2K9L588	Tupanvirus	3.3e-05	39.8
WP_000792381.1\|16211_16448_+	hypothetical protein	NA	NA	NA	NA
WP_000662998.1\|16507_17059_+	hypothetical protein	NA	NA	NA	NA
WP_004208549.1\|17124_17337_+	hypothetical protein	NA	NA	NA	NA
WP_000008707.1\|17326_17569_+	hypothetical protein	NA	NA	NA	NA
WP_001099725.1\|17662_18001_+	hypothetical protein	NA	NA	NA	NA
WP_016197627.1\|18374_18590_-	hypothetical protein	NA	NA	NA	NA
WP_001348698.1\|18834_19380_+	hypothetical protein	NA	NA	NA	NA
WP_004199101.1\|19382_20543_+\|coat	spore coat protein CotH	NA	NA	NA	NA
WP_000455437.1\|20895_21405_+	transcription termination factor NusG	NA	NA	NA	NA
WP_001348696.1\|21355_21592_+	hypothetical protein	NA	NA	NA	NA
WP_000953538.1\|21637_22282_+	transglycosylase	NA	NA	NA	NA
WP_000916156.1\|22265_22556_+	hypothetical protein	NA	NA	NA	NA
WP_015060057.1\|22580_25334_+	type IV secretion/conjugal transfer ATPase PilX3-PilX4	NA	NA	NA	NA
WP_000716326.1\|25343_26114_+	pilus assembly protein	NA	NA	NA	NA
WP_000759841.1\|26123_26381_+	hypothetical protein	NA	NA	NA	NA
WP_000235886.1\|26392_27448_+	pilus assembly protein	NA	NA	NA	NA
WP_004199085.1\|27642_28371_+	pilus assembly protein	NA	NA	NA	NA
WP_000783386.1\|28376_29306_+	conjugal transfer protein	NA	NA	NA	NA
WP_001295060.1\|29302_30517_+	conjugation transfer protein TrbI	NA	NA	NA	NA
WP_000629109.1\|30518_30716_+	DNA-binding protein	NA	NA	NA	NA
WP_000650512.1\|30712_31747_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_004208539.1\|31743_33585_+	VirD4	NA	NA	NA	NA
WP_000738524.1\|33581_33974_+	hypothetical protein	NA	NA	NA	NA
WP_000754496.1\|34061_34376_+	hypothetical protein	NA	NA	NA	NA
WP_004208538.1\|34461_34788_+	hypothetical protein	NA	NA	NA	NA
WP_001215543.1\|34784_35279_+	hypothetical protein	A0A0R6PHV6	Moraxella_phage	8.0e-17	37.3
WP_000517490.1\|35361_36624_+	ATP-binding protein	A0A1V0SKF8	Klosneuvirus	1.3e-07	31.4
WP_004199098.1\|36627_38955_+	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	8.6e-37	28.1
WP_001293458.1\|38966_39422_+	DNA-binding protein	NA	NA	NA	NA
WP_000351937.1\|39459_40110_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_000136657.1\|40382_40562_+	hypothetical protein	NA	NA	NA	NA
WP_000196235.1\|40558_41380_+	sprT domain-containing protein	NA	NA	NA	NA
WP_000510385.1\|41489_41744_+	hypothetical protein	NA	NA	NA	NA
WP_000557557.1\|41761_42037_+	hypothetical protein	NA	NA	NA	NA
WP_004221700.1\|42099_42312_+	hypothetical protein	NA	NA	NA	NA
WP_004221702.1\|42269_42455_+	hypothetical protein	NA	NA	NA	NA
WP_001310555.1\|48251_49268_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_072058317.1\|49305_49428_-	sugar kinase	Q6QLL3	Human_immunodeficiency_virus	2.5e-12	97.2

DBSCAN-SWA_2

53075 : 53366

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004201172.1\|53075_53366_+	co-chaperone GroES	A0A221S322	uncultured_virus	2.1e-17	47.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028787

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028784

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP028786

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection