CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP028547	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020143 plasmid pKPC2_020143, complete sequence	0 crisprs	NA	1
NZ_CP028545	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020143 plasmid p3_020143, complete sequence	0 crisprs	NA	0
NZ_CP028546	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020143 plasmid p4_020143, complete sequence	0 crisprs	NA	0
NZ_CP028543	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020143 plasmid p1_020143, complete sequence	0 crisprs	csa3,cas3,RT	2
NZ_CP028544	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020143 plasmid p2_020143, complete sequence	0 crisprs	DEDDh	1
NZ_CP028548	Klebsiella pneumoniae subsp. pneumoniae strain SCKP020143 chromosome, complete genome	1 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL	11

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1727 : 66699

uncultured_Caudovirales_phage(26.32%)

protease,transposase,integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001515717.1\|1727_2468_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_004152065.1\|3611_4559_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_071527918.1\|4585_4897_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004152067.1\|4961_5885_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.1e-175	98.4
WP_004197688.1\|6557_6815_-	hypothetical protein	NA	NA	NA	NA
WP_080895248.1\|7434_8871_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152070.1\|9853_11131_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_004152071.1\|11193_13197_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_085955172.1\|14230_15438_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178091.1\|16866_17298_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|17548_19024_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|19016_19697_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|19886_21272_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|21300_21654_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_004152079.1\|21767_23060_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_004098958.1\|23070_26217_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_000758228.1\|26303_26744_+	hypothetical protein	NA	NA	NA	NA
WP_004098955.1\|26870_29318_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000843497.1\|29358_29556_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|29589_30327_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|30615_31065_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|31298_33116_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|33115_34012_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|34051_34432_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|34436_35366_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|35420_36101_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004152084.1\|36097_37498_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_004152085.1\|37714_38149_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_004152086.1\|38380_38560_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_031944101.1\|40302_40812_+	major intrinsic protein MIP	NA	NA	NA	NA
WP_004152091.1\|40861_41359_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152092.1\|41690_42017_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_085903505.1\|42016_42727_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004182005.1\|42735_43281_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004152095.1\|43356_43719_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_004152096.1\|45615_46152_+	N-acetyltransferase	NA	NA	NA	NA
WP_004152097.1\|46184_46610_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152098.1\|46622_47912_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152099.1\|47959_49711_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152100.1\|49728_50091_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152101.1\|50140_50491_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152102.1\|50848_51118_+	hypothetical protein	NA	NA	NA	NA
WP_004152103.1\|51105_51681_+	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|51711_52206_+	DNA-binding protein	NA	NA	NA	NA
WP_004152105.1\|52249_52618_+	hypothetical protein	NA	NA	NA	NA
WP_004152106.1\|52651_52855_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152107.1\|52903_53161_+	hypothetical protein	NA	NA	NA	NA
WP_004152108.1\|53236_53491_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|53666_53933_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|53920_54403_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_020314316.1\|54614_55961_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004152113.1\|57803_58766_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_085395420.1\|58752_59502_-	diguanylate cyclase	NA	NA	NA	NA
WP_004152115.1\|59739_59937_-	hypothetical protein	NA	NA	NA	NA
WP_004152116.1\|59936_62732_-	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152117.1\|62846_63416_-	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152118.1\|63450_63732_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_000019473.1\|65718_66699_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1

DBSCAN-SWA_2

73168 : 106162

Escherichia_phage(45.45%)

transposase,bacteriocin,integrase

attL 83068:83127|attR 90960:91779

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004217321.1\|73168_73873_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000427623.1\|75207_76212_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_044117068.1\|76503_77172_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.5
WP_001330846.1\|77891_78137_-	hypothetical protein	NA	NA	NA	NA
WP_000951934.1\|78142_78334_+	hypothetical protein	NA	NA	NA	NA
WP_000587837.1\|78815_79358_-	AAA family ATPase	NA	NA	NA	NA
WP_000557454.1\|79370_80231_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_000971921.1\|81054_82425_-\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA
83068:83127	attL	NA	NA	NA	NA
WP_001067855.1\|83130_83835_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_108193582.1\|83780_84098_-\|transposase	transposase	NA	NA	NA	NA
WP_000845048.1\|84036_85050_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|85194_85692_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|85803_86094_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|86099_86891_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|87054_87402_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259032.1\|87395_88235_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_031974050.1\|88164_88344_-	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|88362_88863_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001297012.1\|89168_89282_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|89369_90134_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_019725122.1\|90474_91011_+	recombinase family protein	E5FFF9	Burkholderia_phage	6.8e-46	60.6
WP_001067855.1\|91022_91727_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001535719.1\|91793_93191_+	HAMP domain-containing protein	A0A1B0V854	Salmonella_phage	1.1e-58	99.2
90960:91779	attR	NA	NA	NA	NA
WP_004152290.1\|93729_96039_+	ATPase	NA	NA	NA	NA
WP_004152291.1\|96042_97359_+	ATP-binding protein	NA	NA	NA	NA
WP_000093087.1\|97355_99551_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_009486390.1\|100172_100361_+	hypothetical protein	NA	NA	NA	NA
WP_024940886.1\|100504_100693_+	hypothetical protein	NA	NA	NA	NA
WP_004152292.1\|100997_101855_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_004171457.1\|101847_101925_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_004199332.1\|102141_102420_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_004152294.1\|102740_103292_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.1e-19	35.2
WP_004152296.1\|103560_103839_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_004178051.1\|103840_106162_-\|bacteriocin	klebicin B-related nuclease bacteriocin	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1796 : 51815

Escherichia_phage(33.33%)

transposase,integrase,protease

attL 8127:8186|attR 59256:60078

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616807.1\|1796_2450_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012602143.1\|2669_3134_+	Plasmid stable inheritance protein	NA	NA	NA	NA
WP_012602142.1\|3130_3235_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|4444_5149_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_042934582.1\|5617_6175_-	hypothetical protein	NA	NA	NA	NA
WP_102012130.1\|6302_6653_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|6700_7405_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_102012131.1\|7395_7590_+	hypothetical protein	NA	NA	NA	NA
WP_008324180.1\|7691_8066_+	hypothetical protein	A0A248SL90	Klebsiella_phage	2.2e-27	62.7
8127:8186	attL	NA	NA	NA	NA
WP_001067855.1\|8191_8896_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000957857.1\|8961_9150_-	hypothetical protein	NA	NA	NA	NA
WP_064441864.1\|9241_9778_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.8e-84	100.0
WP_000027057.1\|9960_10821_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_012372818.1\|10990_11746_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
WP_001067855.1\|12195_12900_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013214010.1\|14101_14359_+	hypothetical protein	NA	NA	NA	NA
WP_013214009.1\|14404_15184_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.4e-52	92.0
WP_011977814.1\|15367_16372_-	hypothetical protein	NA	NA	NA	NA
WP_011977813.1\|16401_16605_-	hypothetical protein	NA	NA	NA	NA
WP_013214008.1\|16650_17172_-	hypothetical protein	NA	NA	NA	NA
WP_032738650.1\|17229_17580_-	hypothetical protein	NA	NA	NA	NA
WP_011977810.1\|17658_18603_-	hypothetical protein	NA	NA	NA	NA
WP_015493090.1\|18763_19198_-	hypothetical protein	NA	NA	NA	NA
WP_001261282.1\|19181_19412_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044770.1\|19408_19825_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004206609.1\|19898_21461_+	AAA family ATPase	NA	NA	NA	NA
WP_000361404.1\|21445_22468_+	helicase UvrD	NA	NA	NA	NA
WP_004199234.1\|23746_24628_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_013213987.1\|25862_26159_-	transcriptional regulator	NA	NA	NA	NA
WP_013213989.1\|26487_26913_-	antirestriction protein	A0A2D0W8Z5	Bordetella_virus	5.3e-17	37.3
WP_013213990.1\|27023_27302_-	hypothetical protein	NA	NA	NA	NA
WP_001161490.1\|28844_29405_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001138014.1\|29408_32375_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_002904004.1\|32615_33476_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|33496_34258_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|34248_34482_+	hypothetical protein	NA	NA	NA	NA
WP_002903955.1\|34519_35422_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_001067855.1\|37055_37760_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000019473.1\|38009_38990_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_015493087.1\|39503_39899_+	hypothetical protein	NA	NA	NA	NA
WP_015493086.1\|39895_40507_+	DUF2913 family protein	NA	NA	NA	NA
WP_015493085.1\|40503_41454_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	6.6e-76	55.6
WP_040219232.1\|41600_41801_-	hypothetical protein	NA	NA	NA	NA
WP_022652286.1\|41854_42487_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.5e-07	31.9
WP_015493083.1\|42849_44055_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.1e-205	89.2
WP_016479949.1\|44051_45023_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-113	68.9
WP_015493081.1\|45158_46430_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	6.1e-154	63.0
WP_015493080.1\|46429_46852_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
WP_015493079.1\|47031_47703_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	5.1e-83	61.7
WP_002211749.1\|48061_48739_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.9
WP_015493077.1\|48738_48960_+	hypothetical protein	NA	NA	NA	NA
WP_015493076.1\|48970_49390_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_015493075.1\|49443_50223_+	hypothetical protein	NA	NA	NA	NA
WP_015493074.1\|50627_51134_+	antirestriction protein ArdA	A0A1I9S7Y0	Rhodococcus_phage	4.8e-09	31.8
WP_015493073.1\|51176_51368_+	hypothetical protein	NA	NA	NA	NA
WP_032072906.1\|51554_51815_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	4.1e-12	46.2
59256:60078	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP028544

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 110241

115

Salmonella_phage(82.52%)

portal,tail,integrase,terminase

attL 3652:3676|attR 20855:20879

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101329664.1\|0_1098_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.7e-72	45.1
WP_014342074.1\|1528_1741_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
WP_040120273.1\|1740_2076_-	hypothetical protein	J9Q7Z5	Salmonella_phage	2.1e-37	67.6
WP_039817759.1\|2072_2252_-	hypothetical protein	NA	NA	NA	NA
WP_048333499.1\|2785_3862_-	recombinase	J9Q736	Salmonella_phage	8.5e-197	96.1
3652:3676	attL	NA	NA	NA	NA
WP_040120271.1\|3864_4131_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.1e-33	83.0
WP_021313784.1\|4130_5075_-	exonuclease	J9Q7S6	Salmonella_phage	2.8e-172	93.6
WP_032440516.1\|5135_6143_-	hypothetical protein	J9Q7Z3	Salmonella_phage	2.1e-144	88.3
WP_032440517.1\|6262_6694_-	hypothetical protein	J9Q6I8	Salmonella_phage	1.1e-65	91.6
WP_021313787.1\|6849_7149_-	hypothetical protein	NA	NA	NA	NA
WP_021313788.1\|7159_7579_-	hypothetical protein	A0A291AWZ9	Escherichia_phage	6.3e-47	62.6
WP_080790246.1\|7779_8223_-	hypothetical protein	J9Q7S4	Salmonella_phage	9.9e-59	83.0
WP_074193573.1\|8219_9389_-	uracil-DNA glycosylase	J9Q7Z2	Salmonella_phage	4.4e-207	92.3
WP_077255320.1\|9410_10112_-	hypothetical protein	S5YLC4	Mycobacterium_phage	6.4e-20	37.1
WP_101329665.1\|10108_12472_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	86.6
WP_071994325.1\|12446_12650_-	hypothetical protein	J9Q6I7	Salmonella_phage	3.3e-25	80.6
WP_032439780.1\|12652_13885_-	AAA domain-containing protein	J9Q733	Salmonella_phage	2.2e-212	86.4
WP_060598440.1\|13981_16261_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	7.2e-246	63.6
WP_014342091.1\|16863_17244_+	transcriptional regulator	NA	NA	NA	NA
WP_101329666.1\|17238_18339_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	1.6e-17	28.4
WP_032443560.1\|18587_18998_-	toxin YafO	NA	NA	NA	NA
WP_100206813.1\|19007_19418_-	hypothetical protein	NA	NA	NA	NA
WP_032443559.1\|19707_19953_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	5.3e-14	47.4
WP_087823467.1\|19949_20336_-	hypothetical protein	Q716B1	Shigella_phage	4.1e-45	70.4
WP_032443558.1\|20345_21122_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	8.5e-90	65.4
20855:20879	attR	NA	NA	NA	NA
WP_040120264.1\|21233_22106_-	hypothetical protein	NA	NA	NA	NA
WP_032440525.1\|22895_23195_-	hypothetical protein	J9Q7S1	Salmonella_phage	3.6e-28	66.3
WP_021313107.1\|23191_23344_-	hypothetical protein	J9Q7Z1	Salmonella_phage	1.6e-16	82.0
WP_023279474.1\|23588_24056_-	hypothetical protein	J9Q7R9	Salmonella_phage	1.3e-48	63.9
WP_087823461.1\|24135_24924_-	hypothetical protein	J9Q7Z0	Salmonella_phage	1.5e-70	51.1
WP_087653286.1\|25044_26160_-	DNA primase	J9Q720	Salmonella_phage	8.2e-203	91.3
WP_101329669.1\|26313_27654_-	AAA family ATPase	J9Q7G4	Salmonella_phage	3.5e-240	95.5
WP_023279420.1\|27718_28444_-	hypothetical protein	J9Q7R8	Salmonella_phage	2.5e-128	88.8
WP_032422983.1\|28616_30380_-	hypothetical protein	X2KLG0	Campylobacter_phage	5.6e-12	27.4
WP_004110193.1\|30376_30739_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.2e-43	97.9
WP_032422982.1\|30738_31404_-	AAA family ATPase	J9Q7R7	Salmonella_phage	2.9e-102	83.7
WP_050485939.1\|31697_32282_+	hypothetical protein	A0A2H4J5U3	uncultured_Caudovirales_phage	6.5e-34	42.6
WP_039817675.1\|32478_32730_-	hypothetical protein	J9Q7R6	Salmonella_phage	2.0e-24	73.5
WP_032422980.1\|32732_33425_-	membrane protein	J9Q7Y7	Salmonella_phage	2.7e-119	89.1
WP_004109805.1\|33438_33762_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
WP_039817683.1\|33857_35303_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	4.4e-39	37.5
WP_102012119.1\|35355_47526_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	1.8e-29	58.3
WP_019704527.1\|47542_48154_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-76	72.1
WP_004109817.1\|48141_48939_-\|tail	tail protein	J9Q7R4	Salmonella_phage	5.4e-140	85.3
WP_004109820.1\|48931_49630_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.2e-122	87.4
WP_032423010.1\|49716_50052_-\|tail	tail protein	J9Q6E1	Salmonella_phage	2.6e-51	84.5
WP_064163025.1\|50095_54631_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	69.8
WP_004109830.1\|54638_54872_-	hypothetical protein	J9Q7F7	Salmonella_phage	3.4e-34	93.5
WP_004109835.1\|54988_55306_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
WP_064152245.1\|55367_56114_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	8.1e-106	82.6
WP_064152246.1\|56181_56574_-	hypothetical protein	J9Q6D8	Salmonella_phage	5.0e-46	66.7
WP_021313126.1\|56575_57049_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
WP_004109848.1\|57039_57384_-	hypothetical protein	J9Q7F6	Salmonella_phage	7.4e-54	92.1
WP_021313128.1\|57481_58315_-	hypothetical protein	J9Q7R2	Salmonella_phage	4.8e-131	83.4
WP_064152247.1\|58314_58749_-	hypothetical protein	J9Q7Y3	Salmonella_phage	1.1e-62	84.0
WP_014342134.1\|58796_59225_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	7.9e-29	71.6
WP_004109857.1\|59302_60181_-	hypothetical protein	J9Q710	Salmonella_phage	4.7e-153	94.2
WP_023279435.1\|60207_61107_-	hypothetical protein	J9Q7F4	Salmonella_phage	6.1e-124	82.6
WP_087525988.1\|61129_62719_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	7.4e-274	88.4
WP_004109863.1\|62736_63993_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
WP_004109866.1\|63995_64637_-	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
WP_004109869.1\|64814_65081_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
WP_026005938.1\|65090_65990_-	hypothetical protein	J9Q7I6	Salmonella_phage	4.2e-165	97.0
WP_060528000.1\|65986_66241_-	hypothetical protein	J9Q7U0	Salmonella_phage	3.4e-40	95.2
WP_019704584.1\|66233_66872_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	1.4e-109	97.6
WP_101329652.1\|66868_67537_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	3.9e-107	92.3
WP_040120249.1\|67536_68217_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	3.6e-108	89.7
WP_040120248.1\|68300_69860_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	1.3e-278	92.7
WP_014342145.1\|69862_70138_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.0e-26	68.1
WP_019704582.1\|70188_70626_-	hypothetical protein	A0A1V0E7W1	Vibrio_phage	9.5e-14	36.4
WP_101329653.1\|70781_71312_+	transcriptional regulator	J9Q6L0	Salmonella_phage	1.3e-70	84.5
WP_032423112.1\|71444_71624_+	hypothetical protein	NA	NA	NA	NA
WP_004109892.1\|71945_72596_+	hypothetical protein	J9Q754	Salmonella_phage	8.4e-107	91.7
WP_004109904.1\|72646_72850_+	hypothetical protein	J9Q7I3	Salmonella_phage	4.1e-28	95.5
WP_040120247.1\|73442_73925_-	hypothetical protein	J9Q805	Salmonella_phage	2.7e-70	77.5
WP_040120246.1\|74130_74412_-	ABC transporter	J9Q753	Salmonella_phage	2.9e-40	82.8
WP_021313142.1\|74414_74789_-	hypothetical protein	NA	NA	NA	NA
WP_004109918.1\|74916_75324_-	hypothetical protein	NA	NA	NA	NA
WP_088426889.1\|75443_75755_-	hypothetical protein	J9Q7T7	Salmonella_phage	5.2e-30	68.0
WP_040120244.1\|75891_76104_-	hypothetical protein	J9Q804	Salmonella_phage	9.9e-25	74.3
WP_019704577.1\|76116_76335_-	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9
WP_101329654.1\|77108_77411_+	hypothetical protein	J9Q7T6	Salmonella_phage	8.0e-12	66.7
WP_065801224.1\|78212_80078_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_101329655.1\|80281_81838_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.9e-104	42.7
WP_032440500.1\|81834_83019_+	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	1.3e-41	50.6
WP_040247712.1\|83140_86257_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	1.0e-24	23.8
WP_021313148.1\|86318_86534_-	hypothetical protein	J9Q747	Salmonella_phage	1.2e-14	69.8
WP_101329656.1\|86662_87241_-	hypothetical protein	J9Q7H6	Salmonella_phage	5.1e-55	57.0
WP_014342167.1\|87368_87524_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.7e-05	61.2
WP_019704567.1\|87523_87949_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	9.8e-56	80.9
WP_032414138.1\|88051_88240_-	hypothetical protein	J9Q800	Salmonella_phage	3.3e-08	52.5
WP_072058614.1\|88236_88515_-	hypothetical protein	NA	NA	NA	NA
WP_101329657.1\|88885_89536_-	ribonuclease HI	J9Q745	Salmonella_phage	4.9e-91	80.1
WP_032423059.1\|90114_90342_-	hypothetical protein	J9Q7H5	Salmonella_phage	7.6e-31	84.0
WP_101329658.1\|90539_91133_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	1.7e-98	84.8
WP_032423057.1\|91317_92151_-	hypothetical protein	J9Q7Z9	Salmonella_phage	1.1e-63	56.4
WP_032423056.1\|92276_92825_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	3.2e-75	74.4
WP_050485941.1\|92821_93403_-	hypothetical protein	A0A1B0VMI8	Pseudomonas_phage	4.2e-33	50.4
WP_014342175.1\|93625_94045_-	hypothetical protein	J9Q743	Salmonella_phage	1.9e-51	73.4
WP_101329659.1\|94108_94753_-	AAA family ATPase	J9Q7H4	Salmonella_phage	1.4e-93	77.1
WP_032423042.1\|94752_95229_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	1.3e-72	80.3
WP_032423043.1\|95225_95639_-	hypothetical protein	J9Q7Z8	Salmonella_phage	6.2e-55	77.4
WP_014342179.1\|95640_96744_-	thymidylate synthase	J9Q6J6	Salmonella_phage	2.5e-180	79.8
WP_101329660.1\|96937_97813_-	nucleoside triphosphate pyrophosphohydrolase family protein	J9Q742	Salmonella_phage	1.3e-139	84.4
WP_101329661.1\|97890_99033_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	4.4e-212	95.5
WP_014342182.1\|99163_101467_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	90.9
WP_021313773.1\|101542_102112_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-94	89.9
WP_080922323.1\|102121_102868_-	hypothetical protein	J9Q6J5	Salmonella_phage	7.7e-80	62.1
WP_101329662.1\|102857_104774_-	AAA family ATPase	J9Q741	Salmonella_phage	2.1e-299	84.5
WP_072196416.1\|104770_105004_-	hypothetical protein	J9Q7H1	Salmonella_phage	4.4e-18	66.1
WP_073579047.1\|105003_106089_-	exonuclease	J9Q7S9	Salmonella_phage	1.8e-183	84.8
WP_073579045.1\|106515_106728_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_080790187.1\|106724_107591_+	hypothetical protein	A0A2I6UHT9	Bacillus_phage	1.1e-05	55.8
WP_080790185.1\|107621_109082_-	hypothetical protein	A0A2I6UHU5	Bacillus_phage	5.0e-59	33.3
WP_080790184.1\|109596_110241_-	hypothetical protein	J9Q739	Salmonella_phage	1.1e-98	80.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP028548

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028548_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028548_1

4561004-4561098

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028548_1

>merge|NZ_CP028548|1|4561004-4561098|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP028548|1|1|4561004-4561098|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028548.1\|WP_002888349.1\|4548117_4550475_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP028548.1\|WP_002888321.1\|4570543_4571392_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP028548.1\|WP_020805925.1\|4571344_4571548_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028548.1\|WP_002888345.1\|4559550_4560915_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP028548.1\|WP_002888368.1\|4552996_4554706_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP028548.1\|WP_002888340.1\|4561239_4562865_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP028548.1\|WP_002888323.1\|4570161_4570539_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP028548.1\|WP_001067855.1\|4546761_4547466_+\|IS6-like-element-IS26-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP028548.1\|WP_002888347.1\|4558831_4559371_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP028548.1\|WP_001067855.1\|4554814_4555519_-\|IS6-like-element-IS26-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP028548.1\|WP_002888332.1\|4563585_4564413_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP028548.1\|WP_014342872.1\|4559333_4559522_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028548.1\|WP_002888357.1\|4551483_4552986_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP028548.1\|WP_002888348.1\|4558097_4558757_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP028548.1\|WP_002888337.1\|4562854_4563553_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP028548.1\|WP_002888353.1\|4550650_4551346_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP028548.1\|WP_002888327.1\|4568351_4569341_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP028548.1\|WP_004147026.1\|4564656_4567005_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP028548.1\|WP_002888324.1\|4569337_4570159_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP028548.1\|WP_002888329.1\|4567059_4568346_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758

Protein	Function_ID	Function_description	E-value
NZ_CP028548.1\|WP_002888349.1\|4548117_4550475_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP028548.1\|WP_002888321.1\|4570543_4571392_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP028548.1\|WP_002888345.1\|4559550_4560915_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP028548.1\|WP_002888368.1\|4552996_4554706_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP028548.1\|WP_002888323.1\|4570161_4570539_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP028548.1\|WP_001067855.1\|4546761_4547466_+\|IS6-like-element-IS26-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.30323e-69
NZ_CP028548.1\|WP_002888347.1\|4558831_4559371_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP028548.1\|WP_001067855.1\|4554814_4555519_-\|IS6-like-element-IS26-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.30323e-69
NZ_CP028548.1\|WP_002888332.1\|4563585_4564413_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP028548.1\|WP_002888340.1\|4561239_4562865_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP028548.1\|WP_002888357.1\|4551483_4552986_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP028548.1\|WP_002888348.1\|4558097_4558757_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP028548.1\|WP_002888337.1\|4562854_4563553_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP028548.1\|WP_002888353.1\|4550650_4551346_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP028548.1\|WP_002888327.1\|4568351_4569341_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP028548.1\|WP_004147026.1\|4564656_4567005_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP028548.1\|WP_002888324.1\|4569337_4570159_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP028548.1\|WP_002888329.1\|4567059_4568346_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0

>NZ_CP028548.1|WP_002888345.1|4559550_4560915_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP028548.1|WP_014342872.1|4559333_4559522_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>NZ_CP028548.1|WP_002888347.1|4558831_4559371_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP028548.1|WP_002888348.1|4558097_4558757_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP028548.1|WP_001067855.1|4554814_4555519_-|IS6-like-element-IS26-family-transposase
MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>NZ_CP028548.1|WP_002888368.1|4552996_4554706_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP028548.1|WP_002888357.1|4551483_4552986_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP028548.1|WP_002888353.1|4550650_4551346_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP028548.1|WP_002888349.1|4548117_4550475_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP028548.1|WP_001067855.1|4546761_4547466_+|IS6-like-element-IS26-family-transposase
MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>NZ_CP028548.1|WP_002888340.1|4561239_4562865_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP028548.1|WP_002888337.1|4562854_4563553_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP028548.1|WP_002888332.1|4563585_4564413_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP028548.1|WP_004147026.1|4564656_4567005_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP028548.1|WP_002888329.1|4567059_4568346_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP028548.1|WP_002888327.1|4568351_4569341_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP028548.1|WP_002888324.1|4569337_4570159_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP028548.1|WP_002888323.1|4570161_4570539_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP028548.1|WP_002888321.1|4570543_4571392_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP028548.1|WP_020805925.1|4571344_4571548_-|hypothetical-protein
MFPVAGFVFFLKRSPGRQIAHKRRSGKALAATRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

449876 : 483134

uncultured_Caudovirales_phage(73.33%)

tRNA,head,integrase,terminase,protease,portal,capsid,tail

attL 467484:467501|attR 483479:483496

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|449876_450824_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|450838_451348_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|451476_452601_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|452572_453046_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|453071_453614_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|453618_454191_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|454194_455013_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|455009_455267_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|455242_455797_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|461592_461814_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|462107_465218_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|465230_466370_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|466748_467399_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
467484:467501	attL	NA	NA	NA	NA
WP_004150971.1\|467674_468901_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|468993_469935_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|470116_470401_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|470411_471191_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_024194847.1\|471314_471509_-	hypothetical protein	NA	NA	NA	NA
WP_106918304.1\|471642_471912_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|471904_472093_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|472085_472400_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|472396_472765_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|472761_473127_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|473126_475262_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|475604_475940_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|475988_476501_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|476764_477931_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|477982_478543_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|478544_479786_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|479782_480118_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|480114_480414_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|480413_480857_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004198610.1\|480983_481175_+	hypothetical protein	NA	NA	NA	NA
WP_000113647.1\|481132_481489_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|481472_483134_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
483479:483496	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1199727 : 1276831

Salmonella_phage(76.09%)

transposase,head,tRNA,plate,integrase,terminase,portal,capsid,coat,lysis,tail

attL 1199581:1199640|attR 1262405:1263600

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1199581:1199640	attL	NA	NA	NA	NA
WP_000019473.1\|1199727_1200708_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_002914289.1\|1201080_1201530_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_004217499.1\|1201648_1201834_-	hypothetical protein	NA	NA	NA	NA
WP_002914287.1\|1202258_1202660_+	DNA-binding protein StpA	NA	NA	NA	NA
WP_002914284.1\|1202732_1202912_-	hypothetical protein	NA	NA	NA	NA
WP_002914281.1\|1203117_1204020_+	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	2.6e-37	40.2
WP_002914279.1\|1204000_1204546_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_002914277.1\|1204553_1204853_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002914274.1\|1204928_1205534_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_004145715.1\|1205637_1206546_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004151036.1\|1206628_1208416_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_004151035.1\|1208679_1210200_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_002914266.1\|1210901_1211483_+	fimbrial protein	NA	NA	NA	NA
WP_004185341.1\|1211677_1212340_+	molecular chaperone	NA	NA	NA	NA
WP_004197944.1\|1212376_1214932_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002914264.1\|1214939_1216034_+	fimbrial protein	NA	NA	NA	NA
WP_002914263.1\|1216046_1217075_-	fimbrial protein	NA	NA	NA	NA
WP_004151033.1\|1217077_1219615_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002914261.1\|1219644_1220313_-	molecular chaperone	NA	NA	NA	NA
WP_002914260.1\|1220354_1220903_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_004218900.1\|1221006_1221624_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004197960.1\|1222063_1222825_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004152937.1\|1222880_1223501_-	hypothetical protein	NA	NA	NA	NA
WP_002914250.1\|1223656_1224451_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_004151028.1\|1224511_1225444_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA
WP_004151027.1\|1225449_1226178_-	hypothetical protein	NA	NA	NA	NA
WP_073547082.1\|1226178_1226430_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|1226487_1227468_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_062955148.1\|1227513_1228512_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.2e-183	94.5
WP_004151019.1\|1228514_1229144_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1229266_1229509_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1229541_1230051_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1230058_1230259_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1230222_1230561_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1230628_1230862_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1230861_1231089_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1231085_1231937_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1231933_1234318_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_009483812.1\|1234547_1234799_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1234798_1236283_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004151011.1\|1236390_1236579_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1236590_1236824_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1236919_1237603_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1237589_1238669_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1238668_1239670_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1240191_1240461_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1240517_1241561_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1241560_1243324_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1243464_1244298_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1244314_1245367_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1245370_1246024_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1246119_1246584_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1246583_1246787_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1246790_1247006_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1246986_1247496_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1247500_1247884_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1247880_1248309_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_085955118.1\|1248238_1248442_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.0e-23	77.6
WP_004150997.1\|1248404_1248827_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1248819_1249266_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1249288_1250155_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1250249_1250822_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1250818_1251181_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004152935.1\|1252068_1252740_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|1252741_1254691_+\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004200602.1\|1254700_1255819_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1255870_1256944_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1257092_1258265_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1258274_1258790_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1258842_1259142_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1259156_1259276_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_000019473.1\|1261336_1262317_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_102012126.1\|1262355_1262481_-	hypothetical protein	NA	NA	NA	NA
WP_004150983.1\|1263095_1263581_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1263577_1264672_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
1262405:1263600	attR	NA	NA	NA	NA
WP_004150981.1\|1264738_1264957_+	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1264984_1265362_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1265965_1266448_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_004188817.1\|1266558_1267035_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1267024_1267315_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1267381_1267723_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002914159.1\|1267870_1269532_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1269618_1270497_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1270621_1271212_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1271331_1272618_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1272637_1273429_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1273592_1274957_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1275216_1275465_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1275483_1276032_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1276063_1276831_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1381547 : 1434284

Salmonella_phage(40.38%)

transposase,integrase,holin,terminase,tail

attL 1374882:1374896|attR 1404987:1405001

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1374882:1374896	attL	NA	NA	NA	NA
WP_004151980.1\|1381547_1383014_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1383081_1384659_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_062955102.1\|1384850_1386101_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	5.8e-205	84.4
WP_063002073.1\|1386043_1386286_-	hypothetical protein	NA	NA	NA	NA
WP_004197356.1\|1386282_1386876_-	MT-A70 family protein	T1SA14	Salmonella_phage	6.3e-109	91.9
WP_062955103.1\|1386872_1387535_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	1.2e-47	46.6
WP_048264082.1\|1387531_1387690_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.1e-17	78.8
WP_009485475.1\|1387682_1387976_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
WP_062955104.1\|1388085_1388334_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	4.9e-31	76.8
WP_062955105.1\|1388382_1389264_-	recombinase RecT	T1SBJ5	Salmonella_phage	8.9e-136	84.3
WP_062955106.1\|1389260_1390082_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.8e-130	80.2
WP_004164029.1\|1390078_1390378_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004144290.1\|1390744_1391326_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
WP_004152538.1\|1391480_1391714_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004152537.1\|1391860_1392070_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004207253.1\|1392069_1392837_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_032418532.1\|1392833_1393619_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_048328152.1\|1393738_1394086_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.5e-50	82.6
WP_062955107.1\|1394278_1394689_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	4.3e-16	45.1
WP_032441402.1\|1394672_1394864_+	hypothetical protein	NA	NA	NA	NA
WP_032441401.1\|1394860_1395505_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	8.0e-110	79.3
WP_072200041.1\|1395798_1396266_+	hypothetical protein	A0A2R2Z312	Escherichia_phage	1.3e-37	51.7
WP_029602865.1\|1396265_1396559_+	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
WP_050491799.1\|1396555_1397176_+	hypothetical protein	Q1MVF7	Enterobacteria_phage	1.0e-29	40.7
WP_032441458.1\|1397175_1397379_+	hypothetical protein	NA	NA	NA	NA
WP_023339258.1\|1397371_1397710_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.8e-44	80.0
WP_004152765.1\|1397806_1399291_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|1399290_1399542_-	hypothetical protein	NA	NA	NA	NA
WP_032418540.1\|1399694_1399952_+	hypothetical protein	NA	NA	NA	NA
WP_032441400.1\|1400029_1400614_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.2e-90	88.6
WP_062955142.1\|1400610_1402086_+	hypothetical protein	Q858H3	Salmonella_phage	6.4e-280	93.1
WP_004200550.1\|1402129_1402501_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.7e-59	91.9
WP_072354015.1\|1402550_1402793_+	hypothetical protein	NA	NA	NA	NA
WP_004141368.1\|1403254_1403461_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_032441398.1\|1403475_1405158_+\|tail	tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	1.5e-264	84.4
1404987:1405001	attR	NA	NA	NA	NA
WP_004152446.1\|1405154_1405451_+	hypothetical protein	T1SBI9	Salmonella_phage	1.2e-33	70.4
WP_032441397.1\|1405453_1406134_+	peptidase	G9L6C4	Escherichia_phage	6.1e-76	84.0
WP_004200546.1\|1406148_1407135_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
WP_020953461.1\|1407188_1407626_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
WP_062955141.1\|1407636_1407978_+	hypothetical protein	G9L6C7	Escherichia_phage	2.4e-36	70.8
WP_004152441.1\|1408028_1408352_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
WP_062955139.1\|1408351_1408957_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	4.0e-87	77.0
WP_062955138.1\|1408956_1411434_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.4
WP_004152438.1\|1411433_1411898_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
WP_032447858.1\|1411897_1412437_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.0e-71	80.0
WP_062955137.1\|1412447_1414982_+	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	84.1
WP_062955136.1\|1414981_1416892_+	hypothetical protein	Q858F9	Salmonella_phage	5.4e-287	82.7
WP_062955135.1\|1416891_1419648_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	95.4
WP_062955134.1\|1419644_1419839_+	hypothetical protein	Q858F7	Salmonella_phage	6.5e-15	67.2
WP_071787028.1\|1419873_1420026_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	2.5e-14	83.7
WP_062955133.1\|1420124_1420421_-	hypothetical protein	T1SA06	Salmonella_phage	6.9e-24	63.9
WP_062955131.1\|1423248_1423512_+	hypothetical protein	NA	NA	NA	NA
WP_032188295.1\|1424674_1424761_+	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|1424799_1425780_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_000608644.1\|1426648_1427911_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_072354001.1\|1428801_1428942_-	hypothetical protein	NA	NA	NA	NA
WP_077265603.1\|1429019_1430336_+	right-handed parallel beta-helix repeat-containing protein	A0A0K2FI18	Enterobacter_phage	2.3e-34	32.3
WP_062955010.1\|1430422_1430827_+	hypothetical protein	T1SA79	Salmonella_phage	8.7e-54	81.1
WP_023339240.1\|1430813_1431119_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	81.4
WP_062955009.1\|1431108_1431738_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.8e-90	76.9
WP_062955008.1\|1431734_1432235_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.3e-59	76.9
WP_102012128.1\|1432421_1434284_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_4

1763867 : 1770773

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1763867_1764731_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004899467.1\|1764741_1765515_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_002912636.1\|1765756_1766650_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1766895_1768257_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1768575_1769298_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_062955084.1\|1769294_1770773_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_5

1811508 : 1824154

Enterobacteria_phage(36.36%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062955058.1\|1811508_1812915_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.6e-38	28.7
WP_062955056.1\|1813138_1814203_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-105	54.7
WP_062956182.1\|1814216_1815086_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.4e-111	67.4
WP_048996045.1\|1815117_1816008_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
WP_004175260.1\|1816022_1816577_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_000704907.1\|1816756_1817923_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
WP_062955151.1\|1818871_1819876_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	4.0e-31	29.2
WP_075053193.1\|1819831_1820113_+	hypothetical protein	NA	NA	NA	NA
WP_073547076.1\|1820715_1821780_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.6e-105	55.0
WP_063002077.1\|1821793_1822663_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.7e-111	67.0
WP_048996045.1\|1822694_1823585_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
WP_015958693.1\|1823599_1824154_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6

DBSCAN-SWA_6

2815288 : 2826176

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151613.1\|2815288_2818396_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004151612.1\|2818450_2819716_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2819746_2820835_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2820921_2821182_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2821479_2822340_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2822360_2823122_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|2823112_2823346_+	hypothetical protein	NA	NA	NA	NA
WP_002903955.1\|2823383_2824286_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_050849168.1\|2824297_2825563_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.9e-232	99.3
WP_002210516.1\|2825555_2826176_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3043111 : 3116450

Enterobacteria_phage(32.43%)

plate,integrase,holin,transposase

attL 3045011:3045028|attR 3124890:3124907

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002902150.1\|3043111_3044452_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002902148.1\|3044464_3046009_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
3045011:3045028	attL	NA	NA	NA	NA
WP_002902144.1\|3046051_3046543_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000019473.1\|3047012_3047993_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_102012124.1\|3048031_3048205_-	hypothetical protein	NA	NA	NA	NA
WP_102012123.1\|3048125_3049190_-\|integrase	integrase family protein	A0A0M4QX09	Salmonella_phage	1.4e-175	82.9
WP_016197745.1\|3049386_3049935_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_004152145.1\|3050133_3051666_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3051882_3052644_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5
WP_004152143.1\|3052752_3053667_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004176439.1\|3053967_3054156_+	hypothetical protein	NA	NA	NA	NA
WP_004152142.1\|3054226_3054535_-	ATP-binding protein	NA	NA	NA	NA
WP_004218009.1\|3054540_3054678_+	glycosyl hydrolase family 2	NA	NA	NA	NA
WP_004152141.1\|3054702_3055572_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.7e-50	42.1
WP_004218007.1\|3055650_3056853_-	MFS transporter	NA	NA	NA	NA
WP_004152139.1\|3056925_3058062_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_004152138.1\|3058234_3059119_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152137.1\|3059243_3060077_-	hypothetical protein	NA	NA	NA	NA
WP_004152136.1\|3060307_3060694_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_004152135.1\|3060861_3062478_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152134.1\|3062663_3063371_+	murein tripeptide amidase MpaA	NA	NA	NA	NA
WP_004152133.1\|3063367_3064333_-	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA
WP_004152131.1\|3064435_3064942_+	thiol peroxidase	NA	NA	NA	NA
WP_085666574.1\|3065012_3066035_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_002901979.1\|3066166_3067708_-	transcriptional regulator TyrR	NA	NA	NA	NA
WP_002901977.1\|3067880_3069194_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_071531198.1\|3069325_3070207_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152127.1\|3070296_3071358_-	TIGR01620 family protein	NA	NA	NA	NA
WP_002901917.1\|3071354_3072752_-	YcjX family protein	NA	NA	NA	NA
WP_002901915.1\|3072854_3073073_-	phage shock protein PspD	NA	NA	NA	NA
WP_002901913.1\|3073101_3073461_-	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_002901911.1\|3073460_3073685_-	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_002901908.1\|3073740_3074409_-	phage shock protein PspA	NA	NA	NA	NA
WP_002901905.1\|3074576_3075551_+	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_002901901.1\|3075541_3076933_-	MFS transporter	NA	NA	NA	NA
WP_002901900.1\|3076958_3078128_-	amidohydrolase	NA	NA	NA	NA
WP_004152126.1\|3078299_3080609_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004171423.1\|3080587_3081418_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004152124.1\|3081528_3082434_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002901817.1\|3082767_3084411_+	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_002901816.1\|3084407_3085373_+	peptide ABC transporter permease SapB	NA	NA	NA	NA
WP_002901815.1\|3085577_3086249_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|3086435_3087263_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|3087338_3088604_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|3088605_3089025_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004152765.1\|3089104_3090589_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3090588_3090840_-	hypothetical protein	NA	NA	NA	NA
WP_004152776.1\|3091486_3091909_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_001067855.1\|3092501_3093206_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000679427.1\|3093821_3094169_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|3094332_3095124_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001067855.1\|3095934_3096639_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_062955100.1\|3096675_3096963_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	4.4e-36	95.4
WP_004218565.1\|3096959_3097499_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_004218567.1\|3097495_3097807_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.8e-49	100.0
WP_004232548.1\|3098444_3099134_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218534.1\|3099133_3099274_-	YlcG family protein	NA	NA	NA	NA
WP_004218533.1\|3099270_3099909_-	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218532.1\|3099901_3100570_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004243010.1\|3100566_3100734_-	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218531.1\|3100714_3101182_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
WP_004218530.1\|3101702_3102731_+	hypothetical protein	NA	NA	NA	NA
WP_004196831.1\|3102938_3103184_-	hypothetical protein	NA	NA	NA	NA
WP_004218528.1\|3103239_3103542_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004201118.1\|3103538_3104387_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004201117.1\|3104383_3105244_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|3105329_3105551_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3105591_3105819_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|3105930_3106629_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_019405077.1\|3106651_3106771_+	hypothetical protein	NA	NA	NA	NA
WP_004201109.1\|3106916_3107993_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|3108074_3108278_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_073547062.1\|3108706_3108901_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|3108989_3109274_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|3109289_3110135_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_004201102.1\|3110420_3111101_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|3111097_3111526_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|3111522_3112185_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004190725.1\|3112181_3112496_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_004153574.1\|3112392_3113580_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	1.1e-120	52.4
WP_004151901.1\|3113756_3114647_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|3114646_3115639_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3115640_3116450_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
3124890:3124907	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3244122 : 3333201

Klebsiella_phage(44.44%)

transposase,tRNA,head,integrase,terminase,portal,capsid,lysis,tail

attL 3270925:3270939|attR 3331012:3331026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3244122_3244623_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3244739_3245186_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901073.1\|3245169_3245961_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004150777.1\|3246062_3247247_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3247278_3247971_-	CTP synthase	NA	NA	NA	NA
WP_004150778.1\|3248116_3248626_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004150779.1\|3248612_3248969_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004150780.1\|3248958_3249198_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004150781.1\|3249498_3250512_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.0
WP_004150782.1\|3250569_3250671_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_099119317.1\|3250670_3250745_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3250862_3250988_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3251047_3251311_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3251441_3252080_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3252169_3253084_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_020956815.1\|3253299_3253491_+	hypothetical protein	NA	NA	NA	NA
WP_004150784.1\|3253745_3254789_-	type II asparaginase	NA	NA	NA	NA
WP_004150785.1\|3255091_3256300_+	HD domain-containing protein	NA	NA	NA	NA
WP_004150787.1\|3256373_3258158_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150788.1\|3258164_3259055_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3259175_3260684_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150790.1\|3260994_3261681_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004140501.1\|3262078_3262258_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3262297_3262930_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3263496_3263694_+	hypothetical protein	NA	NA	NA	NA
WP_004140509.1\|3263809_3264820_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004150793.1\|3264816_3266223_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140512.1\|3266278_3267166_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3267182_3267689_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150794.1\|3267715_3268210_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3268300_3268486_-	general stress protein	NA	NA	NA	NA
WP_004140529.1\|3269107_3270301_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3270413_3270641_+	DUF1272 domain-containing protein	NA	NA	NA	NA
3270925:3270939	attL	NA	NA	NA	NA
WP_004150797.1\|3271077_3271401_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3271393_3271786_+	amino acid-binding protein	NA	NA	NA	NA
WP_004150799.1\|3271782_3272496_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3272768_3272921_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_023328083.1\|3273075_3274572_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.4e-125	63.7
WP_073547060.1\|3274640_3287345_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.1
WP_023328085.1\|3287407_3288001_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	76.6
WP_047666390.1\|3288027_3288450_-	hypothetical protein	J9Q806	Salmonella_phage	5.9e-29	50.0
WP_047666389.1\|3288491_3289202_-	peptidase P60	Q6UAW4	Klebsiella_phage	1.9e-136	90.3
WP_023328087.1\|3289203_3289959_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.5
WP_023328088.1\|3289955_3290294_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-57	88.4
WP_023328089.1\|3290293_3293629_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.3
WP_071836352.1\|3293628_3293847_-	hypothetical protein	Q6UAW9	Klebsiella_phage	5.4e-34	90.5
WP_014228914.1\|3293861_3294227_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_023328090.1\|3294284_3294746_-	hypothetical protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_023328091.1\|3294777_3295179_-	hypothetical protein	Q6UAX1	Klebsiella_phage	2.3e-62	94.0
WP_017880258.1\|3295175_3295565_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_023328092.1\|3295545_3295884_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	2.8e-53	90.2
WP_020317538.1\|3295880_3296198_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_049010370.1\|3296178_3296439_-	hypothetical protein	Q6UAX5	Klebsiella_phage	7.4e-22	60.5
WP_023328094.1\|3296497_3297784_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	9.8e-216	89.0
WP_014907815.1\|3297861_3298782_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
WP_023279520.1\|3298818_3300078_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.8e-222	89.8
WP_017898992.1\|3300077_3300257_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_021462603.1\|3300250_3301972_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.5e-190	57.4
WP_012542168.1\|3301971_3302406_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_014907818.1\|3302654_3303086_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.6
WP_023297386.1\|3303082_3303406_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|3303357_3303720_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_032749552.1\|3304046_3304271_+	hypothetical protein	NA	NA	NA	NA
WP_049115059.1\|3304309_3304747_-	hypothetical protein	NA	NA	NA	NA
WP_016160650.1\|3305696_3306047_-	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_032432826.1\|3306043_3306541_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	84.6
WP_016160648.1\|3306540_3306756_-\|lysis	phage S lysis protein	A5LH82	Enterobacteria_phage	2.7e-30	88.7
WP_000019473.1\|3307078_3308059_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_102012129.1\|3308097_3308223_-	hypothetical protein	NA	NA	NA	NA
WP_025861432.1\|3310207_3310810_-	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-76	68.6
WP_062955112.1\|3310826_3311858_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-96	49.6
WP_017898980.1\|3311857_3312061_-	hypothetical protein	NA	NA	NA	NA
WP_025861428.1\|3312057_3312450_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_077255782.1\|3312490_3312781_-	hypothetical protein	H6WRY6	Salmonella_phage	8.0e-17	56.9
WP_025368263.1\|3312792_3313026_-	DinI family protein	K7PM44	Enterobacteria_phage	3.7e-25	71.1
WP_004152765.1\|3313104_3314589_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3314588_3314840_-	hypothetical protein	NA	NA	NA	NA
WP_062954975.1\|3315429_3316791_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA
WP_062954976.1\|3316964_3317678_-	hypothetical protein	NA	NA	NA	NA
WP_062954989.1\|3318029_3318899_+	hypothetical protein	NA	NA	NA	NA
WP_062954977.1\|3318987_3320379_+	hypothetical protein	NA	NA	NA	NA
WP_032443841.1\|3320727_3321168_-	hypothetical protein	NA	NA	NA	NA
WP_047667474.1\|3321181_3321646_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.1e-63	72.2
WP_077265602.1\|3321638_3322643_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.0e-31	40.0
WP_046622349.1\|3322702_3323257_-	hypothetical protein	NA	NA	NA	NA
WP_071561166.1\|3323259_3323484_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.3e-19	62.5
WP_077257742.1\|3323572_3324010_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.3e-39	62.2
WP_040234937.1\|3324331_3324646_-	hypothetical protein	NA	NA	NA	NA
WP_099143961.1\|3324808_3325027_+	hypothetical protein	NA	NA	NA	NA
WP_023279538.1\|3325036_3325231_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3325273_3325618_+	transcriptional regulator	NA	NA	NA	NA
WP_062954978.1\|3325759_3327898_+	exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	5.6e-99	42.7
WP_012542206.1\|3327950_3328196_+	excisionase	NA	NA	NA	NA
WP_032418030.1\|3328176_3329304_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.4e-119	58.4
WP_004150800.1\|3329421_3330672_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004150801.1\|3330912_3331563_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3331012:3331026	attR	NA	NA	NA	NA
WP_004150802.1\|3331579_3332038_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3332094_3333201_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_9

3549180 : 3642131

Salmonella_phage(56.9%)

tRNA,head,plate,integrase,terminase,protease,portal,capsid,lysis,tail

attL 3604706:3604724|attR 3642206:3642224

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3549180_3550473_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3550563_3551907_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3551915_3552527_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|3552649_3556903_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3557038_3557533_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_002898019.1\|3558065_3559034_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|3559148_3560915_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3560915_3562637_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3562681_3563383_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3563736_3563955_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_101329668.1\|3564075_3566355_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3566385_3566703_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3567028_3567250_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_071528213.1\|3567204_3567387_-	hypothetical protein	NA	NA	NA	NA
WP_004150848.1\|3567326_3569267_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3569263_3570379_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3570525_3572184_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3572603_3573299_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3573414_3574314_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|3574457_3576110_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3576120_3577089_+	NADH oxidoreductase	NA	NA	NA	NA
WP_085666582.1\|3577039_3577243_+	hypothetical protein	NA	NA	NA	NA
WP_002896408.1\|3577300_3577735_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3577886_3579605_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3579643_3580645_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3580655_3582098_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3582185_3583199_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3583195_3584026_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3584057_3585197_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_004147767.1\|3585249_3585429_+	hypothetical protein	NA	NA	NA	NA
WP_002896394.1\|3586074_3586590_+	lipoprotein	NA	NA	NA	NA
WP_032419144.1\|3586816_3587545_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3587565_3588297_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3588303_3589020_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|3589019_3589688_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3589871_3590603_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3590645_3592118_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3592114_3592831_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3592909_3594037_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3594078_3594567_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3594624_3595470_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3595466_3596420_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3596430_3597564_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3597727_3598840_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3599188_3599668_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3599756_3600659_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3601480_3601768_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3601970_3602234_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3602240_3602624_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|3602890_3604576_+	aspartate:alanine antiporter	NA	NA	NA	NA
3604706:3604724	attL	NA	NA	NA	NA
WP_000972391.1\|3604795_3605014_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3605105_3606206_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|3606202_3606688_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896222.1\|3606684_3609312_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896220.1\|3609304_3609424_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3609438_3609738_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3609790_3610306_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3610315_3611488_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3611626_3612703_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896188.1\|3612732_3612936_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3612932_3613664_-	hypothetical protein	NA	NA	NA	NA
WP_004152882.1\|3613667_3616619_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_004150856.1\|3616620_3617220_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3617212_3618121_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_032441567.1\|3618107_3618470_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.9e-48	83.9
WP_002896177.1\|3618466_3619039_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004150857.1\|3619133_3619826_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3619822_3620269_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3620261_3620693_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896168.1\|3620788_3621217_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3621213_3621597_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3621601_3622111_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3622091_3622307_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3622310_3622514_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|3622513_3622978_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|3623073_3623724_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3623727_3624786_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3624802_3625636_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3625778_3627545_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3627544_3628570_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|3628631_3630374_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|3630649_3631327_-	hypothetical protein	NA	NA	NA	NA
WP_001316229.1\|3631441_3631747_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3631685_3631874_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004150862.1\|3632027_3634442_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|3634438_3635296_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|3635292_3635520_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|3635519_3635753_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|3635820_3636162_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|3636125_3636326_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3636333_3636843_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3636875_3637097_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|3637242_3638121_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|3638132_3639077_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|3639175_3640660_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3640659_3640911_-	hypothetical protein	NA	NA	NA	NA
WP_004151720.1\|3641078_3642131_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0
3642206:3642224	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4294581 : 4306234

Enterobacteria_phage(70.0%)

integrase

attL 4295031:4295045|attR 4318087:4318101

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004144574.1\|4294581_4295685_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
4295031:4295045	attL	NA	NA	NA	NA
WP_002889940.1\|4295695_4296949_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4297301_4298492_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4298479_4299430_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_004152979.1\|4299429_4299855_+	hypothetical protein	NA	NA	NA	NA
WP_004152202.1\|4300422_4300989_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|4301006_4301252_-	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_062956184.1\|4301248_4301986_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.9e-70	59.4
WP_002889915.1\|4302527_4302794_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_024940872.1\|4302790_4303348_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4303344_4303572_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4303568_4303889_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4303900_4306234_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
4318087:4318101	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4962197 : 5002618

Salmonella_phage(15.38%)

integrase,transposase

attL 4952389:4952404|attR 4981608:4981623

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4952389:4952404	attL	NA	NA	NA	NA
WP_001138082.1\|4962197_4965083_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.1e-190	39.9
WP_001389365.1\|4965785_4966550_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001297012.1\|4966637_4966751_+	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|4967056_4967557_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_031974050.1\|4967575_4967755_+	hypothetical protein	NA	NA	NA	NA
WP_000259032.1\|4967684_4968524_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|4968517_4968865_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|4969028_4969820_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_042862943.1\|4969912_4971172_-	chloramphenicol efflux MFS transporter CmlA10	S4TR35	Salmonella_phage	1.1e-25	31.3
WP_000381802.1\|4971426_4971960_-	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
WP_015059047.1\|4972033_4972366_-	quaternary ammonium compound efflux SMR transporter QacL	E5E3Y9	Acinetobacter_phage	3.5e-08	34.3
WP_015057121.1\|4972616_4973576_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.7e-47	40.5
WP_001067855.1\|4973466_4974171_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_096634015.1\|4974161_4974359_+	hypothetical protein	NA	NA	NA	NA
WP_001082319.1\|4974399_4975203_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_000480968.1\|4975202_4976039_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_028690953.1\|4976162_4976528_-	DUF3742 family protein	NA	NA	NA	NA
WP_028690952.1\|4976612_4977245_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_023657212.1\|4977257_4977884_-	hypothetical protein	NA	NA	NA	NA
WP_028690951.1\|4978203_4980048_+	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_028690950.1\|4980128_4982780_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	5.2e-155	33.9
4981608:4981623	attR	NA	NA	NA	NA
WP_028690949.1\|4982805_4984671_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	3.4e-52	37.1
WP_028690948.1\|4984731_4986045_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.3e-77	40.2
WP_028690947.1\|4986096_4987404_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_023464790.1\|4987422_4988253_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_023464791.1\|4988311_4989646_-	DUF3422 domain-containing protein	NA	NA	NA	NA
WP_023103885.1\|4989828_4990227_-	VOC family protein	NA	NA	NA	NA
WP_011871467.1\|4990270_4991380_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.9e-35	30.4
WP_028690946.1\|4991439_4991715_-	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_028690945.1\|4991997_4992888_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_028690944.1\|4992884_4993493_-	GNAT family acetyltransferase	NA	NA	NA	NA
WP_023103882.1\|4993494_4993902_-	hypothetical protein	NA	NA	NA	NA
WP_023103881.1\|4994056_4994962_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_028690943.1\|4995112_4997089_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_071534863.1\|4997302_4997521_+	hypothetical protein	NA	NA	NA	NA
WP_023835768.1\|4997464_4997896_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_006473314.1\|4998303_4998642_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_072160368.1\|4998702_5000253_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	4.5e-90	42.0
WP_096634014.1\|5001447_5002618_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.5e-90	61.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028543

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP028544

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP028548

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection