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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024142 Escherichia coli strain 14EC029 plasmid p14EC029a, complete sequence 0 crisprs c2c9_V-U4 0 0 1 0
NZ_CP024143 Escherichia coli strain 14EC029 plasmid p14EC029b, complete sequence 0 crisprs csa3 0 0 2 0
NZ_CP024146 Escherichia coli strain 14EC029 plasmid p14EC029e, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP024145 Escherichia coli strain 14EC029 plasmid p14EC029d, complete sequence 0 crisprs RT,DEDDh 0 0 0 0
NZ_CP024141 Escherichia coli strain 14EC029 chromosome, complete genome 13 crisprs cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4 0 14 9 0
NZ_CP024144 Escherichia coli strain 14EC029 plasmid p14EC029c, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. NZ_CP024146
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 79296 : 88228 10 Stx2-converting_phage(44.44%) transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP024142
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2118 : 57097 57 Saccharomonospora_phage(15.38%) transposase,integrase attL 21749:21808|attR 57125:58195

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP024143
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 57807 : 97358 43 Escherichia_phage(30.77%) transposase,integrase,protease attL 52756:52769|attR 62666:62679
DBSCAN-SWA_2 100696 : 158208 56 Escherichia_phage(33.33%) transposase,integrase attL 94843:94902|attR 169008:169829

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP024141
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_1 661154-661271 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_2 1053284-1053800 Orphan I-E
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_3 1080848-1081241 TypeI-E I-E
6 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_4 1629791-1629932 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_5 1856242-1856377 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_6 2305030-2305153 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_7 3063430-3063521 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_8 3362723-3362867 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_9 3859616-3859712 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_10 3874842-3874995 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_11 4084713-4084828 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_12 4107741-4107873 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024141_13 4353233-4353382 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024141_7 7.1|3063456|40|NZ_CP024141|CRISPRCasFinder 3063456-3063495 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP024141_12 12.1|4107758|42|NZ_CP024141|PILER-CR 4107758-4107799 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 0 1.0
NZ_CP024141_12 12.2|4107817|40|NZ_CP024141|PILER-CR 4107817-4107856 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 1 0.975
NZ_CP024141_6 6.1|2305073|38|NZ_CP024141|CRISPRCasFinder 2305073-2305110 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP024141_3 3.11|1081181|33|NZ_CP024141|CRT 1081181-1081213 33 LC542972 Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence 246936-246968 3 0.909
NZ_CP024141_10 10.1|3874895|48|NZ_CP024141|CRISPRCasFinder 3874895-3874942 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4089-4136 3 0.938
NZ_CP024141_10 10.1|3874895|48|NZ_CP024141|CRISPRCasFinder 3874895-3874942 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4088-4135 3 0.938
NZ_CP024141_10 10.1|3874895|48|NZ_CP024141|CRISPRCasFinder 3874895-3874942 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4088-4135 3 0.938
NZ_CP024141_10 10.1|3874895|48|NZ_CP024141|CRISPRCasFinder 3874895-3874942 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4088-4135 3 0.938
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 104-159 4 0.929
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_MG299151 Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence 51276-51307 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_KY471628 Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence 45716-45747 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_MG299131 Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence 51276-51307 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_KY471629 Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence 45716-45747 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_MG299133 Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence 51276-51307 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_MG299128 Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence 51276-51307 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_MG299147 Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence 51276-51307 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NC_018995 Escherichia coli plasmid pHUSEC41-1, complete sequence 29015-29046 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_CP053235 Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence 78292-78323 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_CP005999 Escherichia coli B7A plasmid pEB1, complete sequence 39563-39594 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 KU932021 Escherichia coli plasmid pEC3I, complete sequence 51902-51933 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_CP024154 Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence 18560-18591 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NC_011754 Escherichia coli ED1a plasmid pECOED, complete sequence 49240-49271 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_CP015141 Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence 81434-81465 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_LR213460 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3 28916-28947 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_MH287044 Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence 36182-36213 7 0.781
NZ_CP024141_2 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053679-1053710 32 NZ_MH618673 Escherichia coli strain 838B plasmid p838B-R, complete sequence 32230-32261 7 0.781
NZ_CP024141_2 2.6|1053618|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053618-1053649 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1417960-1417991 8 0.75
NZ_CP024141_3 3.4|1081060|32|NZ_CP024141|PILER-CR 1081060-1081091 32 MK448454 Streptococcus satellite phage Javan361, complete genome 9192-9223 8 0.75
NZ_CP024141_3 3.11|1081181|33|NZ_CP024141|CRT 1081181-1081213 33 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 1428097-1428129 8 0.758
NZ_CP024141_4 4.1|1629845|34|NZ_CP024141|CRISPRCasFinder 1629845-1629878 34 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 15030-15063 9 0.735
NZ_CP024141_2 2.1|1053313|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT 1053313-1053344 32 NZ_CP030933 Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence 51062-51093 10 0.688
NZ_CP024141_3 3.1|1080877|32|NZ_CP024141|PILER-CR 1080877-1080908 32 CP011075 Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence 244686-244717 10 0.688
NZ_CP024141_3 3.1|1080877|32|NZ_CP024141|PILER-CR 1080877-1080908 32 GU075905 Prochlorococcus phage P-HM2, complete genome 78536-78567 10 0.688
NZ_CP024141_3 3.6|1080876|33|NZ_CP024141|CRT 1080876-1080908 33 GU075905 Prochlorococcus phage P-HM2, complete genome 78535-78567 10 0.697
NZ_CP024141_3 3.11|1081181|33|NZ_CP024141|CRT 1081181-1081213 33 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 141278-141310 10 0.697
NZ_CP024141_4 4.1|1629845|34|NZ_CP024141|CRISPRCasFinder 1629845-1629878 34 NZ_CP010859 Marinovum algicola DG 898 plasmid pMaD4, complete sequence 3636-3669 10 0.706
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4157-4212 10 0.821
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4156-4211 10 0.821
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP044308 Escherichia coli strain C27A plasmid pC27A-3, complete sequence 115797-115852 10 0.821
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4156-4211 10 0.821
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4156-4211 10 0.821
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229185-229240 11 0.804
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239679-239734 11 0.804
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230591-230646 11 0.804
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211561-211616 11 0.804
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229286-229341 12 0.786
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239780-239835 12 0.786
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230692-230747 12 0.786
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211662-211717 12 0.786
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229084-229139 13 0.768
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239578-239633 13 0.768
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230490-230545 13 0.768
NZ_CP024141_5 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder 1856282-1856337 56 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211460-211515 13 0.768

1. spacer 7.1|3063456|40|NZ_CP024141|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0 

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 12.1|4107758|42|NZ_CP024141|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0 

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 12.2|4107817|40|NZ_CP024141|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975 

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

4. spacer 6.1|2305073|38|NZ_CP024141|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947 

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 3.11|1081181|33|NZ_CP024141|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.909 

gggcgcactggatgcgatgatggatatcactta	CRISPR spacer
ggacgcactggatgcgatgatggacatcacttg	Protospacer
**.*********************.*******.

6. spacer 10.1|3874895|48|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938 

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

7. spacer 10.1|3874895|48|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938 

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

8. spacer 10.1|3874895|48|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938 

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

9. spacer 10.1|3874895|48|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938 

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

10. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 4, identity: 0.929 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt	CRISPR spacer
acgatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt	Protospacer
 .** .**************************************************

11. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

12. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

13. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

14. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

15. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

16. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

17. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

18. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

19. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

20. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

21. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

22. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

23. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

24. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

25. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

26. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

27. spacer 2.7|1053679|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

28. spacer 2.6|1053618|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75 

tcaacgcgctcagacgttgcgtgagtgaacca	CRISPR spacer
acaacgcggtcggacgttgcgtgattaccccg	Protospacer
 ******* **.************ *.  **.

29. spacer 3.4|1081060|32|NZ_CP024141|PILER-CR matches to MK448454 (Streptococcus satellite phage Javan361, complete genome) position: , mismatch: 8, identity: 0.75 

tccgtttggtccaccaaatgtttgatgcttca	CRISPR spacer
tcttatcaatccaccaaatttttgattcttca	Protospacer
**.  *...********** ****** *****

30. spacer 3.11|1081181|33|NZ_CP024141|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.758 

gggcgcactggatgcgatgatggata---tcactta	CRISPR spacer
gggcgcactggaagcggtgatggaggggcgcac---	Protospacer
************ ***.******* .    ***

31. spacer 4.1|1629845|34|NZ_CP024141|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 9, identity: 0.735 

tgcatccggcacccggagcctgatgcgacgctgg	CRISPR spacer
atcaacaattaccaggtgcctgatgcgacgctgg	Protospacer
  ** * . .*** ** *****************

32. spacer 2.1|1053313|32|NZ_CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688 

tccacgctgtaacggccatcattaagtttagt	CRISPR spacer
ccgctgctgtgacgcccatcattaagttactc	Protospacer
.*  .*****.*** *************   .

33. spacer 3.1|1080877|32|NZ_CP024141|PILER-CR matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688 

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
tgaggcaaaatatagattgatttccgaaaata	Protospacer
  .*.********* ******** ****

34. spacer 3.1|1080877|32|NZ_CP024141|PILER-CR matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.688 

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
acggaaaaattatatattgattttacttctgg	Protospacer
***** *** *************     .*.

35. spacer 3.6|1080876|33|NZ_CP024141|CRT matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.697 

gacggacaaaatatatattgatttgcgaattat	CRISPR spacer
gacggaaaaattatatattgattttacttctgg	Protospacer
****** *** *************     .*.

36. spacer 3.11|1081181|33|NZ_CP024141|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 10, identity: 0.697 

gggcgcactggatgcgatgatggatatcactta	CRISPR spacer
cggcgcactggaaccgatgatggatgcgatgag	Protospacer
 ***********  ***********.. *.  .

37. spacer 4.1|1629845|34|NZ_CP024141|CRISPRCasFinder matches to NZ_CP010859 (Marinovum algicola DG 898 plasmid pMaD4, complete sequence) position: , mismatch: 10, identity: 0.706 

tgcatccggcacccggagcctgatgcgacgctgg	CRISPR spacer
tgtcgaaggcacccgcaccctgatgcgacgcgcc	Protospacer
**.    ******** * *************

38. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.821 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

39. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.821 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

40. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 10, identity: 0.821 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

41. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.821 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

42. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.821 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

43. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.804 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************************** ******* *    ** ****

44. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.804 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************************** ******* *    ** ****

45. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.804 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************************** ******* *    ** ****

46. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.804 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************************** ******* *    ** ****

47. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.786 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaatt	Protospacer
 .** ***************************** ******* *  *.**  *..*

48. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.786 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaatt	Protospacer
 .** ***************************** ******* *  *.**  *..*

49. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.786 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaatt	Protospacer
 .** ***************************** ******* *  *.**  *..*

50. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.786 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaatt	Protospacer
 .** ***************************** ******* *  *.**  *..*

51. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.768 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat-ggcgtgagaatt	Protospacer
 .** ***************************** ******* *  *.*.  *..*

52. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.768 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat-ggcgtgagaatt	Protospacer
 .** ***************************** ******* *  *.*.  *..*

53. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.768 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat-ggcgtgagaatt	Protospacer
 .** ***************************** ******* *  *.*.  *..*

54. spacer 5.1|1856282|56|NZ_CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.768 

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat-ggcgtgagaatt	Protospacer
 .** ***************************** ******* *  *.*.  *..*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1088606 : 1101789 12 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_2 1181859 : 1188675 9 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_3 1249623 : 1289700 49 Salmonella_phage(57.5%) integrase,tail,terminase,head,holin attL 1249362:1249379|attR 1291324:1291341
DBSCAN-SWA_4 1758127 : 1767568 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_5 1923641 : 2014343 88 Escherichia_phage(45.1%) transposase,integrase,capsid,terminase,tail,head,holin,portal,protease attL 1954254:1954269|attR 1985535:1985550
DBSCAN-SWA_6 2390998 : 2449292 76 Enterobacteria_phage(35.85%) transposase,capsid,lysis,tail,terminase,head,portal NA
DBSCAN-SWA_7 2689616 : 2745342 58 Escherichia_phage(51.06%) transposase,integrase,lysis,terminase,tail,tRNA attL 2708529:2708545|attR 2750943:2750959
DBSCAN-SWA_8 3191719 : 3279519 92 Salmonella_phage(60.0%) transposase,integrase,plate,capsid,lysis,tail,terminase,head,tRNA,portal,protease attL 3257098:3257114|attR 3282815:3282831
DBSCAN-SWA_9 3849834 : 3898535 43 Enterobacteria_phage(33.33%) integrase,capsid,transposase,plate attL 3849730:3849749|attR 3861821:3861840

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. NZ_CP024144
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 18387 : 66332 46 Escherichia_phage(43.75%) integrase,transposase attL 36112:36128|attR 71171:71187

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage