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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024128 Escherichia coli strain 14EC001 plasmid p14EC001a, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP024129 Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence 0 crisprs csa3 0 0 2 0
NZ_CP024130 Escherichia coli strain 14EC001 plasmid p14EC001c, complete sequence 0 crisprs csa3 0 0 1 0
NZ_CP024127 Escherichia coli strain 14EC001 chromosome, complete genome 9 crisprs csa3,PD-DExK,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol,RT 0 15 13 0

Results visualization

1. NZ_CP024129
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 80 : 73589 48 Escherichia_phage(30.0%) transposase NA
DBSCAN-SWA_2 106141 : 113927 10 Escherichia_phage(28.57%) integrase attL 105798:105813|attR 121253:121268

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP024130
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7924 : 59323 42 Escherichia_phage(40.0%) integrase,transposase attL 43472:43531|attR 59328:60110

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP024127
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024127_1 1005939-1006577 Orphan I-E
10 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024127_2 1033628-1033961 TypeI-E I-E
5 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024127_3 1537695-1537812 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024127_4 2310133-2310256 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024127_5 3113253-3113344 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024127_6 3284992-3285136 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024127_7 3451645-3451789 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024127_8 3727112-3727208 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024127_9 4286037-4286178 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP038506 Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence 11835-11866 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP019283 Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence 42147-42178 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 CP042641 Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence 36520-36551 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP034821 Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence 1557-1588 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP027443 Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence 9506-9537 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP027575 Escherichia coli strain 2013C-4081 plasmid unnamed2 94756-94787 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP027223 Escherichia coli strain 2015C-3101 plasmid unnamed2 65534-65565 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP030188 Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence 61916-61947 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP027590 Escherichia coli strain 2014C-3011 plasmid unnamed2 64165-64196 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP039862 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence 20286-20317 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP033632 Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence 119284-119315 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_AP018798 Escherichia coli strain E2855 plasmid pE2855-2, complete sequence 85099-85130 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 CP012494 Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence 46688-46719 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 CP027320 Escherichia coli strain 2014C-3084 plasmid unnamed1 42116-42147 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NC_013370 Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence 87237-87268 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP026475 Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence 81853-81884 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 MN510445 Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence 70500-70531 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 MN510447 Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence 47861-47892 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP012491 Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence 62997-63028 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 MH422554 Escherichia phage P1, complete genome 87194-87225 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NC_050152 Enterobacteria phage P7, complete genome 93995-94026 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 MH445380 Escherichia virus P1 isolate transconjugant 2(L-II), complete genome 58645-58676 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NC_031129 Salmonella phage SJ46, complete genome 77363-77394 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 MH445381 Escherichia virus P1, complete genome 56870-56901 0 1.0
NZ_CP024127_5 5.1|3113279|40|NZ_CP024127|CRISPRCasFinder 3113279-3113318 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_KP453775 Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence 17440-17471 2 0.938
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP017632 Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence 122310-122341 2 0.938
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP030285 Escherichia coli strain E308 plasmid pLKSZ04, complete sequence 6029-6060 2 0.938
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 NZ_CP036204 Escherichia coli strain L725 plasmid punnamed2, complete sequence 15121-15152 2 0.938
NZ_CP024127_2 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033901-1033932 32 MN510446 Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence 131402-131433 2 0.938
NZ_CP024127_4 4.1|2310176|38|NZ_CP024127|CRISPRCasFinder 2310176-2310213 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP024127_1 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT 1006334-1006365 32 NZ_LR134258 Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence 3574-3605 3 0.906
NZ_CP024127_1 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT 1006334-1006365 32 LR134281 Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6 3567-3598 3 0.906
NZ_CP024127_1 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT 1006334-1006365 32 KY271401 Klebsiella phage 1 LV-2017, complete genome 21043-21074 3 0.906
NZ_CP024127_1 1.7|1006333|33|NZ_CP024127|PILER-CR 1006333-1006365 33 NZ_LR134258 Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence 3574-3606 4 0.879
NZ_CP024127_1 1.7|1006333|33|NZ_CP024127|PILER-CR 1006333-1006365 33 LR134281 Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6 3567-3599 4 0.879
NZ_CP024127_1 1.7|1006333|33|NZ_CP024127|PILER-CR 1006333-1006365 33 KY271401 Klebsiella phage 1 LV-2017, complete genome 21043-21075 4 0.879
NZ_CP024127_1 1.13|1006090|32|NZ_CP024127|CRISPRCasFinder,CRT 1006090-1006121 32 KU686197 Synechococcus phage S-CAM3 isolate 0808SB25, complete genome 118383-118414 5 0.844
NZ_CP024127_1 1.13|1006090|32|NZ_CP024127|CRISPRCasFinder,CRT 1006090-1006121 32 KU686199 Synechococcus phage S-CAM3 isolate 1010CC42, complete genome 118389-118420 5 0.844
NZ_CP024127_1 1.13|1006090|32|NZ_CP024127|CRISPRCasFinder,CRT 1006090-1006121 32 KU686198 Synechococcus phage S-CAM3 isolate 0910TB04, complete genome 118373-118404 5 0.844
NZ_CP024127_1 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT 1006334-1006365 32 KY653119 Morganella phage IME1369_02, complete genome 18217-18248 5 0.844
NZ_CP024127_1 1.3|1006089|33|NZ_CP024127|PILER-CR 1006089-1006121 33 KU686197 Synechococcus phage S-CAM3 isolate 0808SB25, complete genome 118383-118415 6 0.818
NZ_CP024127_1 1.3|1006089|33|NZ_CP024127|PILER-CR 1006089-1006121 33 KU686199 Synechococcus phage S-CAM3 isolate 1010CC42, complete genome 118389-118421 6 0.818
NZ_CP024127_1 1.3|1006089|33|NZ_CP024127|PILER-CR 1006089-1006121 33 KU686198 Synechococcus phage S-CAM3 isolate 0910TB04, complete genome 118373-118405 6 0.818
NZ_CP024127_1 1.7|1006333|33|NZ_CP024127|PILER-CR 1006333-1006365 33 KY653119 Morganella phage IME1369_02, complete genome 18216-18248 6 0.818
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24789-24826 6 0.842
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24902-24939 6 0.842
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4073-4110 6 0.842
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4072-4109 6 0.842
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4072-4109 6 0.842
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4072-4109 6 0.842
NZ_CP024127_1 1.20|1006517|32|NZ_CP024127|CRISPRCasFinder,CRT 1006517-1006548 32 MK814759 Gordonia phage Reyja, complete genome 4467-4498 8 0.75
NZ_CP024127_2 2.1|1033657|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033657-1033688 32 MF773750 Mycobacterium phage OKCentral2016, complete genome 32038-32069 8 0.75
NZ_CP024127_2 2.1|1033657|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033657-1033688 32 JX307704 Mycobacterium virus Goose, complete genome 32135-32166 8 0.75
NZ_CP024127_2 2.3|1033779|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033779-1033810 32 NZ_CP042402 Weissella hellenica strain CBA3632 plasmid unnamed3, complete sequence 12282-12313 8 0.75
NZ_CP024127_2 2.4|1033840|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033840-1033871 32 NZ_CP016287 Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence 458381-458412 8 0.75
NZ_CP024127_2 2.4|1033840|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033840-1033871 32 NZ_CP030762 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed2, complete sequence 130817-130848 8 0.75
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 3331-3368 8 0.789
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 3330-3367 8 0.789
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 3330-3367 8 0.789
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 3330-3367 8 0.789
NZ_CP024127_1 1.16|1006273|32|NZ_CP024127|CRISPRCasFinder,CRT 1006273-1006304 32 NC_007959 Nitrobacter hamburgensis X14 plasmid 1, complete sequence 246573-246604 9 0.719
NZ_CP024127_2 2.3|1033779|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033779-1033810 32 CP003185 Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome 44776-44807 9 0.719
NZ_CP024127_2 2.3|1033779|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT 1033779-1033810 32 NC_019956 Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence 105005-105036 9 0.719
NZ_CP024127_6 6.2|3285076|33|NZ_CP024127|CRISPRCasFinder 3285076-3285108 33 MN855903 Myoviridae sp. isolate 490, partial genome 4171-4203 9 0.727
NZ_CP024127_6 6.4|3285084|33|NZ_CP024127|PILER-CR 3285084-3285116 33 MN855903 Myoviridae sp. isolate 490, partial genome 4171-4203 9 0.727
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 14114-14151 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 51843-51880 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229388-229425 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239882-239919 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230794-230831 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211764-211801 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 40383-40420 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 313601-313638 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 386517-386554 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 397090-397127 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 404135-404172 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP044308 Escherichia coli strain C27A plasmid pC27A-3, complete sequence 114998-115035 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP019246 Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence 40307-40344 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 MT230112 Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence 103-140 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31308-31345 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 8897-8934 9 0.763
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 17901-17938 9 0.763
NZ_CP024127_1 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT 1006334-1006365 32 MF158039 Shigella phage Sf12, complete genome 4975-5006 10 0.688
NZ_CP024127_1 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT 1006334-1006365 32 MF158042 Shigella phage Sd1, complete genome 938-969 10 0.688
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP044308 Escherichia coli strain C27A plasmid pC27A-3, complete sequence 56040-56077 10 0.737
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP053046 Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence 58275-58312 10 0.737
NZ_CP024127_9 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder 4286089-4286126 38 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30215-30252 10 0.737
NZ_CP024127_1 1.7|1006333|33|NZ_CP024127|PILER-CR 1006333-1006365 33 MF158039 Shigella phage Sf12, complete genome 4974-5006 11 0.667
NZ_CP024127_1 1.7|1006333|33|NZ_CP024127|PILER-CR 1006333-1006365 33 MF158042 Shigella phage Sd1, complete genome 937-969 11 0.667

1. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

2. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

3. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

4. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

5. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

6. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

7. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

8. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

9. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

10. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

11. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

12. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

13. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

14. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

15. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

16. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

17. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

18. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

19. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

20. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

21. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

22. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

23. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

24. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

25. spacer 5.1|3113279|40|NZ_CP024127|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0 

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

26. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

27. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

28. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

29. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

30. spacer 2.5|1033901|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938 

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacgttatgaaccgacattcatgt	Protospacer
************ * *****************

31. spacer 4.1|2310176|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947 

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

32. spacer 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT matches to NZ_LR134258 (Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence) position: , mismatch: 3, identity: 0.906 

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
gggttcgcggcgttaacgctcaccagcatttc	Protospacer
* ***.*****.********************

33. spacer 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT matches to LR134281 (Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6) position: , mismatch: 3, identity: 0.906 

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
gggttcgcggcgttaacgctcaccagcatttc	Protospacer
* ***.*****.********************

34. spacer 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 3, identity: 0.906 

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
gggttcgcggcgttaacgctcaccagcatttc	Protospacer
* ***.*****.********************

35. spacer 1.7|1006333|33|NZ_CP024127|PILER-CR matches to NZ_LR134258 (Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence) position: , mismatch: 4, identity: 0.879 

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggggttcgcggcgttaacgctcaccagcatttc	Protospacer
 * ***.*****.********************

36. spacer 1.7|1006333|33|NZ_CP024127|PILER-CR matches to LR134281 (Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6) position: , mismatch: 4, identity: 0.879 

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggggttcgcggcgttaacgctcaccagcatttc	Protospacer
 * ***.*****.********************

37. spacer 1.7|1006333|33|NZ_CP024127|PILER-CR matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 4, identity: 0.879 

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggggttcgcggcgttaacgctcaccagcatttc	Protospacer
 * ***.*****.********************

38. spacer 1.13|1006090|32|NZ_CP024127|CRISPRCasFinder,CRT matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 5, identity: 0.844 

ttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
atttgtgatacagtaaacgtttgagtatctgc	Protospacer
 ******** ****** *********** *.*

39. spacer 1.13|1006090|32|NZ_CP024127|CRISPRCasFinder,CRT matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 5, identity: 0.844 

ttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
atttgtgatacagtaaacgtttgagtatctgc	Protospacer
 ******** ****** *********** *.*

40. spacer 1.13|1006090|32|NZ_CP024127|CRISPRCasFinder,CRT matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 5, identity: 0.844 

ttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
atttgtgatacagtaaacgtttgagtatctgc	Protospacer
 ******** ****** *********** *.*

41. spacer 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT matches to KY653119 (Morganella phage IME1369_02, complete genome) position: , mismatch: 5, identity: 0.844 

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggttgtgcggcgttaacgctgaccagcatttc	Protospacer
*  * ******.******** ***********

42. spacer 1.3|1006089|33|NZ_CP024127|PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 6, identity: 0.818 

gttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
aatttgtgatacagtaaacgtttgagtatctgc	Protospacer
. ******** ****** *********** *.*

43. spacer 1.3|1006089|33|NZ_CP024127|PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 6, identity: 0.818 

gttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
aatttgtgatacagtaaacgtttgagtatctgc	Protospacer
. ******** ****** *********** *.*

44. spacer 1.3|1006089|33|NZ_CP024127|PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 6, identity: 0.818 

gttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
aatttgtgatacagtaaacgtttgagtatctgc	Protospacer
. ******** ****** *********** *.*

45. spacer 1.7|1006333|33|NZ_CP024127|PILER-CR matches to KY653119 (Morganella phage IME1369_02, complete genome) position: , mismatch: 6, identity: 0.818 

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
aggttgtgcggcgttaacgctgaccagcatttc	Protospacer
 *  * ******.******** ***********

46. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

47. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

48. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

49. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

50. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

51. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

52. spacer 1.20|1006517|32|NZ_CP024127|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75 

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **

53. spacer 2.1|1033657|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MF773750 (Mycobacterium phage OKCentral2016, complete genome) position: , mismatch: 8, identity: 0.75 

gagcgtagagattctcgaaaccgatccggacg	CRISPR spacer
cctcgtagagatcctcgaagccgatctcggcg	Protospacer
   *********.******.******. *.**

54. spacer 2.1|1033657|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to JX307704 (Mycobacterium virus Goose, complete genome) position: , mismatch: 8, identity: 0.75 

gagcgtagagattctcgaaaccgatccggacg	CRISPR spacer
cctcgtagagatcctcgaagccgatctcggcg	Protospacer
   *********.******.******. *.**

55. spacer 2.3|1033779|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042402 (Weissella hellenica strain CBA3632 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75 

gtaataaaaaatattctatttctgctgaatca	CRISPR spacer
gtaataaaaaatctactatttctgattttaga	Protospacer
************ * ********* *     *

56. spacer 2.4|1033840|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75 

cttgcgagcaaaagatccaggccgagaaagac	CRISPR spacer
aagccgagcaaaagatccaggcggtgaagggc	Protospacer
    ****************** * ***.*.*

57. spacer 2.4|1033840|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030762 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75 

cttgcgagcaaaagatccaggccgagaaagac	CRISPR spacer
aagccgagcaaaagatccaggcggtgaagggc	Protospacer
    ****************** * ***.*.*

58. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.789 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

59. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.789 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

60. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.789 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

61. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.789 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

62. spacer 1.16|1006273|32|NZ_CP024127|CRISPRCasFinder,CRT matches to NC_007959 (Nitrobacter hamburgensis X14 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719 

gcaaaaaccgggcaatcgcaaaaaggcgtaat	CRISPR spacer
gaaaaaaccgcccaatcgcaaaaagatgacga	Protospacer
* ********  *************..*  .

63. spacer 2.3|1033779|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to CP003185 (Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome) position: , mismatch: 9, identity: 0.719 

gtaataaaaaatattctatttctgctgaatca	CRISPR spacer
ataataaataatattctgtttctgtgtgttta	Protospacer
.******* ********.******.  . *.*

64. spacer 2.3|1033779|32|NZ_CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NC_019956 (Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence) position: , mismatch: 9, identity: 0.719 

gtaataaaaaatattctatttctgctgaatca	CRISPR spacer
ataataaataatattctgtttctgtgtgttta	Protospacer
.******* ********.******.  . *.*

65. spacer 6.2|3285076|33|NZ_CP024127|CRISPRCasFinder matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727 

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

66. spacer 6.4|3285084|33|NZ_CP024127|PILER-CR matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727 

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

67. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tgattgccggatgcggcgtaaacgccttatccggccta	Protospacer
*...**.**********.**************..**..

68. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ctggtgccggatgcggcgtaaacgccttatccggccta	Protospacer
. * **.**********.**************..**..

69. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

70. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

71. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

72. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

73. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

74. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aaaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
 *. **.**********.**************..**..

75. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caagtgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

76. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caattgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*..**.**********.**************..**..

77. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttcttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

78. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
. .***.**********.**************. **..

79. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttatgccggatgcggcgtaaacgccttatccggccta	Protospacer
*   **.**********.**************..**..

80. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
atgttgccggatgcggcgtaaacgccttatccggccta	Protospacer
  *.**.**********.**************..**..

81. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

82. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cggttgccggatgcggcgtaaacgccttatccggccta	Protospacer
..*.**.**********.**************..**..

83. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
gacttgccggatgcggcgtaaacgccttatccggccac	Protospacer
 * .**.**********.**************..**

84. spacer 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 10, identity: 0.688 

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ttgtttgcagcattaacgctccccaagtgccg	Protospacer
 *******.************ ***.   ..

85. spacer 1.17|1006334|32|NZ_CP024127|CRISPRCasFinder,CRT matches to MF158042 (Shigella phage Sd1, complete genome) position: , mismatch: 10, identity: 0.688 

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ttgtttgcagcattaacgctctccaagtgccg	Protospacer
 *******.************ ***.   ..

86. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 10, identity: 0.737 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccattgccggatgcggcgtaaacgccttatccggccta	Protospacer
. ..**.**********.**************..**..

87. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP053046 (Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence) position: , mismatch: 10, identity: 0.737 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aggttgccggatgcggcgtaaacgccttatccggcata	Protospacer
 .*.**.**********.**************..* ..

88. spacer 9.1|4286089|38|NZ_CP024127|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 10, identity: 0.737 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatctggccta	Protospacer
.*. **.**********.*************...**..

89. spacer 1.7|1006333|33|NZ_CP024127|PILER-CR matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 11, identity: 0.667 

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
attgtttgcagcattaacgctccccaagtgccg	Protospacer
  *******.************ ***.   ..

90. spacer 1.7|1006333|33|NZ_CP024127|PILER-CR matches to MF158042 (Shigella phage Sd1, complete genome) position: , mismatch: 11, identity: 0.667 

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
attgtttgcagcattaacgctctccaagtgccg	Protospacer
  *******.************ ***.   ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1041386 : 1049327 8 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_2 1135066 : 1146269 13 Enterobacteria_phage(77.78%) integrase,transposase attL 1134047:1134060|attR 1147638:1147651
DBSCAN-SWA_3 1669501 : 1776973 114 Enterobacteria_phage(33.33%) transposase,terminase,holin,integrase,capsid,tail,tRNA,protease,head attL 1657383:1657442|attR 1746092:1746859
DBSCAN-SWA_4 1826648 : 1836994 10 Enterobacteria_phage(33.33%) transposase NA
DBSCAN-SWA_5 1890081 : 1975608 66 Enterobacteria_phage(41.46%) portal,transposase,terminase,integrase,capsid,tail,holin,head attL 1892645:1892663|attR 1960380:1960398
DBSCAN-SWA_6 2027846 : 2063174 43 Enterobacteria_phage(86.11%) portal,plate,terminase,integrase,capsid,tail,holin,head attL 2026778:2026837|attR 2063281:2063404
DBSCAN-SWA_7 2340861 : 2489342 159 Escherichia_phage(26.03%) portal,terminase,transposase,holin,integrase,capsid,tail,tRNA,protease,head attL 2365465:2365524|attR 2450246:2450262
DBSCAN-SWA_8 2855527 : 2914261 68 Stx2-converting_phage(24.0%) terminase,integrase,capsid,tail,tRNA,holin,lysis,head attL 2863818:2863832|attR 2914363:2914377
DBSCAN-SWA_9 3162391 : 3287975 113 Escherichia_phage(36.67%) portal,plate,terminase,holin,integrase,capsid,tail,tRNA,protease,lysis,head attL 3174330:3174350|attR 3274650:3274670
DBSCAN-SWA_10 3371818 : 3450161 91 Enterobacteria_phage(32.76%) portal,transposase,terminase,integrase,capsid,tail,holin,lysis,head attL 3379952:3379986|attR 3451595:3451629
DBSCAN-SWA_11 3644428 : 3749219 91 Enterobacteria_phage(58.97%) portal,transposase,terminase,holin,capsid,tail,tRNA,protease,lysis,head NA
DBSCAN-SWA_12 3945526 : 4042344 91 Shigella_phage(39.13%) portal,plate,transposase,terminase,capsid,tail,holin,protease,lysis,head NA
DBSCAN-SWA_13 4061162 : 4078095 24 Enterobacteria_phage(31.82%) integrase,transposase attL 4062473:4062486|attR 4066697:4066710

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage