CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015562	Pasteurella multocida strain USDA-ARS-USMARC-59910 chromosome, complete genome	2 crisprs	cas14j,DEDDh,cas3,cas8f,cas5f,cas7f,cas6f,cas1,cas3-cas2,DinG	1	17	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015562_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015562_1

825780-826828

TypeI-F

Consensus_repeat	Method
GTTCACCATCGTGTAGATGGCTTAGAAA	PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	CRT

17 spacers

cas6f,cas7f,cas5f,cas8f,cas1,cas3-cas2

The CRISPR arrays of NZ_CP015562_1

>merge|NZ_CP015562|1|825780-826828|PILER-CR,CRISPRCasFinder,CRT
GTTCACCATCGTGTAGATGGCTTAGAAAACAACAAAAAACTTGTGAACGTTTAGCCGCAAGTTCACCATCGTGTAGATGGCTTAGAAAATTCGTGACAAAAGACGAATATAAGAAAAGAAGTTCACCATCGTGTAGATGGCTTAGAAAATTCGTGACAAAAGACGAATATAAGAAAAGAAGTTCACCATCGTGTAGATGGCTTAGAAAGTCGTTGAAACGGCACCATGGGCGTTTGCATTTGTTCACCATCGTGTAGATGGCTTAGAAAGAAACACTAGAAGATTTAACGGTCATTGAAAAGTTCACCATCGTGTAGATGGCTTAGAAAATTCGATTTCCAGTGCCGAAAATCCATGCCCTGTTCACCATCGTGTAGATGGCTTAGAAAATAATGACGTGTTCAACTAACGGCTGACAATCGTTCACCATCGTGTAGATGGCTTAGAAACACAACATGTGCTGAAAGTGCGTGAGATTTGAGTTCACCATCGTGTAGATGGCTTAGAAATACCCGATGTTAGAGGCAATCAAAGTGGAGCTGTTCACCATCGTGTAGATGGCTTAGAAAAAAGTCTCATTTAACACCGCGCGACGCTGGAAGTTCACCATCGTGTAGATGGCTTAGAAAAAGCCCACCTTGCGCTTGAACAGATGAATTAAGTTCACCATCGTGTAGATGGCTTAGAAATTTAAGCTACGTTTATCCGCAAGATTCACTACGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATTGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAAGTTAAAGCTAAGAAACTAACGGATATTGCGAGTTCACCATCGTGTAGATGGCTTAAAAA

>NZ_CP015562|1|1|825780-826648|PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	ACAACAAAAAACTTGTGAACGTTTAGCCGCAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTCGTTGAAACGGCACCATGGGCGTTTGCATTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA

>NZ_CP015562|1|1|825780-826828|CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	ACAACAAAAAACTTGTGAACGTTTAGCCGCAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTCGTTGAAACGGCACCATGGGCGTTTGCATTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATTGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	AGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAA

>NZ_CP015562|1|1|825780-826828|CRT
GTTCACCATCGTGTAGATGGCTTAGAAA	ACAACAAAAAACTTGTGAACGTTTAGCCGCAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTCGTTGAAACGGCACCATGGGCGTTTGCATTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATTGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	AGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015562.1\|WP_005725867.1\|833333_833924_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015562.1\|WP_014325840.1\|812394_815298_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP015562.1\|WP_005751227.1\|811837_812353_+\|heme-utilization-protein-HutZ	unknown	unknown	gnl\|CDD\|200361
NZ_CP015562.1\|WP_014325842.1\|817166_819215_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP015562.1\|WP_005721377.1\|837757_838144_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP015562.1\|WP_005721326.1\|835799_836264_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP015562.1\|WP_016504385.1\|821738_823073_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP015562.1\|WP_014325841.1\|815872_816985_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|183270
NZ_CP015562.1\|WP_005721328.1\|836311_837526_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP015562.1\|WP_014325843.1\|819348_821508_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NZ_CP015562.1\|WP_005753659.1\|826997_827978_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
NZ_CP015562.1\|WP_014325850.1\|835004_835721_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|223639
NZ_CP015562.1\|WP_014325848.1\|827958_831279_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|187804
NZ_CP015562.1\|WP_014325849.1\|833987_834791_-\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|236753
NZ_CP015562.1\|WP_005721273.1\|815464_815734_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP015562.1\|WP_005721379.1\|838213_838537_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NZ_CP015562.1\|WP_014325846.1\|824068_825076_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP015562.1\|WP_016504384.1\|823082_824066_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|274204
NZ_CP015562.1\|WP_005753664.1\|831336_833193_+\|response-regulator	unknown	unknown	gnl\|CDD\|236842
NZ_CP015562.1\|WP_014325847.1\|825078_825639_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|274202

Protein	Function_ID	Function_description	E-value
NZ_CP015562.1\|WP_014325840.1\|812394_815298_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.24483e-109
NZ_CP015562.1\|WP_005751227.1\|811837_812353_+\|heme-utilization-protein-HutZ	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	2.01653e-97
NZ_CP015562.1\|WP_014325842.1\|817166_819215_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP015562.1\|WP_005721377.1\|837757_838144_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.51567e-94
NZ_CP015562.1\|WP_005721326.1\|835799_836264_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	5.78928e-83
NZ_CP015562.1\|WP_016504385.1\|821738_823073_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	5.29485e-151
NZ_CP015562.1\|WP_014325841.1\|815872_816985_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
NZ_CP015562.1\|WP_005721328.1\|836311_837526_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP015562.1\|WP_014325843.1\|819348_821508_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NZ_CP015562.1\|WP_005753659.1\|826997_827978_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0
NZ_CP015562.1\|WP_014325850.1\|835004_835721_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	3.89077e-117
NZ_CP015562.1\|WP_014325848.1\|827958_831279_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP015562.1\|WP_014325849.1\|833987_834791_-\|inositol-1-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	9.50997e-153
NZ_CP015562.1\|WP_005721273.1\|815464_815734_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.85836e-50
NZ_CP015562.1\|WP_005721379.1\|838213_838537_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.36459e-65
NZ_CP015562.1\|WP_014325846.1\|824068_825076_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP015562.1\|WP_016504384.1\|823082_824066_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|274204	TIGR02565, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.3086e-151
NZ_CP015562.1\|WP_005753664.1\|831336_833193_+\|response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP015562.1\|WP_014325847.1\|825078_825639_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|274202	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.09974e-90

>NZ_CP015562.1|WP_014325847.1|825078_825639_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MTTHYIELKAIPQMDMLQSEVIGHCMQILHQFLPHFEGRVGVAFPAYGLGRTLGGIVRLFANQEDCNQLHQQLLRSGLSDYALISEVSKTPLSTECRSYSRVHRKGQSAIRRTEKRLKSQGRWDESIRADMQQRQQNVAFFPHCHLKSASTGQRFILAVKENRMPQSCVGVFNAYGLSNSATVPHF
>NZ_CP015562.1|WP_014325846.1|824068_825076_+|type-I-F-CRISPR-associated-protein-Csy3
MSKLSTPSVLAFERNLDISDAIFAQKDSKNDKDAPVPLRIREKSVRGTISNRLKNTITNDPAKLDAETEKANLQRVDVATLDDDKDTLVATFSVKVLPFTGRPNVCNDQDYQHQVMTTVAQYLSEQGMDELAKRYATNIANARWLWRNRMGAEKIKIEVTCGENTLHFDDAKQFSLNHFDHQDDKIHQIAKEIKQGLLGEKFVILYVTAYANMGYGQEVYPSQELVLDNSTNNRKSKILYEINQKAGMHSQKVGNAIRTIDTWYAEEVAFPIAAEPYGAVTTLGTAFRQPKTKKNDFYTLFDNWLLKGEVPPVEQQHYVMSVLIRGGVFGASGKE
>NZ_CP015562.1|WP_016504384.1|823082_824066_+|type-I-F-CRISPR-associated-protein-Csy2
MFQTDFYILFDHIKVQSANAISGPLSYGFPALTGLTGAMHALNRKLTHHPVQFGGVMVACHDYELQTYQNSAFSDRTFKQTRNPIKRNGETASIIEEGKIHLDLSLVVEVHVQDDRVFEALTDKTSQASQDFLQTCKNLLWQQRIAGGSVLEIGNVQLFNLEEDQDIPLALMPAFVLMDAKQELTNITEELKTGLRIGQLDEEGNVQKSCLPSCPDATALDALLEMATVHHIPEHANATASAWQTYSVKKGRGWLVPLPVGYQAISPLFAPGQLQHCRTQQYPSQYVETLYSLGKWVFPLSLPENLSQCFWRYTALQNNLYLISQGE
>NZ_CP015562.1|WP_016504385.1|821738_823073_+|type-I-F-CRISPR-associated-protein-Csy1
MSHTFRKRIDLFLQEQNLKKSESDRKKLAKATDPTEIEQLTQLIQEFDQKYQFDTWIANAANVMAKQLKFGTHIAKGIHPDTKGDNVNFQPSDSLPPEYVGSQSVSHLVLDANGNAAALPLASFFNFIVDEEKQVKLRDLLLADDPRLAGCFSDDLALSDVYKKQFQQALTGDLTQPETHERNKQVFWANGENPIEDDDYTCLIPLYPSSLTHAFYQKVNNNRYSEQNKQARENRQKKTVEQTHYLSINQLATVVLGGSKPQNISQLMSAQGGRNYLLPSLPPIIPSSRYFRLSPLQTTIFNDRLAYACRYGLRQLFEVVEARKNVYQVRDSRIDALNNILRTFLFHANLLQKQPAGWSKDSQLEMCEKYWLDPKRVHLPDEEAFRAEYEKGEWVAEVERRFALWLNKRLQKRFPHIAKDFDDVEYHEWRRNIRRTLRYRLRHP
>NZ_CP015562.1|WP_014325843.1|819348_821508_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MKQLFATTARGFEELLKVELTDLGAMDCQITQGGVHFHADEETQYRVLLWTRLASRILLPIVTCKVYSDLDLYSAVVGQNWLDYFDEKAHFMVDFNGTNREIRHTQFGAMRVKDGIVDYFERVGKPRPNVDKSQPDIRIHAYLNREELVISLDLSGDALHMRGYREDTGKAPLRETLAAAIVLRSGWQLGTPLVDPMCGSGTLLIEAAQMQANIAPQLHRLHWGFDFWKGHNQQAWDKVKGEAIELAEQTFNQNQKANFYGCDLDHRVLQKAKRNAQNAGVAHLIQWRQGDVAALKNPFVEAKGTVICNPPYGERLGTTPALIALYSVFGQRLKQQFADWNVSIFSGEPALLDCLRLRSHRQFKAKNGPLDCVQKNYHISARATASDENTQNLPEIDRTLSATQVAVDFANRLQKNSKKIEKWARQQGINAYRLYDADLPEYNLAVDRYDDHIVVQEYAAPKNIDENKARQRLLDAVTATLQVTGVETNKLILKVRQKQKGTNQYEKLANKGDYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMLGKMAKGKDVLNLFAYTGSATVHMALGGAKSTTTVDMSNTYLNWAEQNLLLNDLEGKQHKLIQADCLQWLARCDRQFDLIFVDPPTFSNSKRMEDSWDVQRDHIKLMTQLKRILRPNGTIVFSNNKRGFKMDVEGLETLGLSAVDITAKTLPLDFERNKQIHNCWVVRLKADL
>NZ_CP015562.1|WP_014325842.1|817166_819215_+|methionine--tRNA-ligase
MANSARDILVTCALPYANGAIHLGHLLEHIQADIWVRFQRMRGHKVHFICADDAHGTPIMLNADKLGITPEALIARSKADHVADFEGFNISYDNYHSTHSPENEALTAEMYKKLRANGFIKSRTISQLFDPEKGMFLPDRFVKGTCPKCKAEDQYGDNCEVCSSTYSPTELINPRSVVSGATPVLKESEHFFFDLPAFEGMLKAWIKSGSLQPEIANKMQEWFESGLQQWDISRDAPYFGFKIPDTEDKYFYVWLDAPIGYMASFKNLCDKTGLNFDDFWKKDSSAELYHFIGKDIVYFHSLFWPAMLDGCDLRKPTNVFAHGYVTVNGVKMSKSRGTFIQASTYLRHLAPEYLRYYYAAKLNNRIEDLDLNLEDFVQRLNADVVNKFVNLASRSAGFITKRFDGKLSAEIAEPELLAEFVEKAAQIATYYEEREFGKVVREVMQLADKANKYIDDKAPWVMAKEEGREAELQAVCSMALQLFRVLAIYLKPVIPQIIARAEAFLQDELTWESLNRPLLNHAILPFKALAQRLDLKQIEAIVNETKEQFVAQQALEQKNSAKAEPASQVEPIAETISIEDFAKLDLRVAKVMKCEAVPESNKLLRFELDLGDHTRQVFSGIKEAYNNPAELEGRFVVVIANLAPRKMRFGVSEGMILSAGTGGDDLFLLNADQGVKPGMQVK
>NZ_CP015562.1|WP_014325841.1|815872_816985_-|iron-sulfur-cluster-carrier-protein-ApbC
MGILFSDSLTDSQKQAIQNTFQQFQHPSLQKDLVSLNAIKKIEKGGETLRIEISMPFAWNTAFEQLKSALSTELLTLAECKDIKWQLNYQIATLKRANSHPAVKGVKNIIAVTSGKGGVGKSTISVNLALALQRQGARVGILDADIYGPSIPHMLGVADQRPTSPDNQHITPIQAHHIFANSIGFLMEPDNATIWRGPMASSALSQLLQETLWPDLDYLVIDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGVAMFERVSVPVLGIIENMSMHICSNCGHQETIFGTGGAERIAQKYNVKVLGQQALHIRLREDLDKGIPTVVAAPESDIAQSFMQLAEKVATELYWQGSVIPSEIMFKEVK
>NZ_CP015562.1|WP_005721273.1|815464_815734_+|30S-ribosomal-protein-S15
MSLSTEKKAAIVAEFGRDAKDTGSSEVQIALLTAQINHLQSHFATHKKDHHGRRGLLRMVSRRRKLLDYLKRTNLELYTSTIARLGLRR
>NZ_CP015562.1|WP_014325840.1|812394_815298_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MRTTTIKFSAITLALLSYCGTILADSHQEATELDTITVSSQQDEMNIKEKKIGETVKTASQLKRQQVQDSRDLVRYETGVTVVEAGRFGSSGYAIRGVDENRVAITVDGLHQAETLSSQGFKELFEGYGNFNNTRNSVEIETLKVAKIAKGADSVKVGSGSLGGAVLFETKDARDFLTEKDWHIGYKAGYSTADNQGLNAVTLAGRYQMFDALIMHSKRHGHELENYDYKNGRDIQGKEREKADPYTITKESTLVKFSFSPTENHRFTVASDTYLQHSRGHDLSYNLVATTHIQLDEKESRHANDLTKRKNVSFTYENYTVTPFWDTLKLSYSQQRITTRARTEDYCDGNELCDSYKNPLGLQFKDGQILDPAGNKIKLQGSGLSTQIVDENGKPFPTTTGTNNAAFSNNLRLRPTGFWLDCSVFDCNKPFTVYNISNGTYQAREVLLSEEITVDGKLYKTAKEEGGLPNYLILPNSKGYLPYDYKERDLNTNTKQINLDLTKTFLTFNIENNLSYGGVYSRIEKEMINKAGYEGRNPTWWADRILGQSSYCGYNALKCPKHEPLTSFLIPVEATTQSLYFANILKVHNMISIDLGYRYDHIKYNPEYTPGVTPKIPDDMVKGLFIPMPKEPQLKDFDYNYAKFGEAYKKWKEYLPKNAEENIAYIAQDKTFKKHSYSLGATFDPLNFLRVQVKYSKGFRAPTSDELYFTFKHPDFTILPNPVLKPEEAKNQEIALTVHDNWGFVSTSVFQTKYRHFIDLAYLGSRNLSNSVGGQAQARDFQVYQNVNVDNAKVKGLEINARLNLGYFWHVLDGFNTSYKFTYQRGRLDGDRPMNAIQPKASVFGLGYDHKENKFGADLYITRVSEKKAKDTYNMFYKEQGYKDSAVRWRSDDYTLVDAVGYIKPIKNLTLQFGVYNLTDRKYLTWESARSIKPFGTSNLINQKTGAGINRFYSPGRNFKLSAEITF
>NZ_CP015562.1|WP_005751227.1|811837_812353_+|heme-utilization-protein-HutZ
MTTNRQEVLQNRLGPEIQELKAQCKTVMLATVGEDGNPNVSYAPFAINNGEYQVFISTIARHARNLQEVPKVSLMLIEDESQSRQIFARRRLSFDAVARVVERESEEWHSGVEALKARHGALMDELSRMKDFHLFSFKPSQGLFVKGFGQAFQVSNDDLVSFVHLVEGHQE
>NZ_CP015562.1|WP_005753659.1|826997_827978_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MRKTPYIPSSDLKTIMHSKRANIYYLEHCRVLLNGGRVEYVTDEGRESLYWNIPIANTSCLLLGSGTSITQAAMRELSKAGVMVGFCSGGGTPLFNGTEAEIGCEFFSPQSEYRPVMYLQQWCKFWFDDEKRLAVAKALQQQRLALLEPIWSKLEWVYSCEKLTALVTQYQHEFAQAAHSQALLAAEGRLTTKLYALANQATMNEPDFKRSERGKSIDLVNQFLDHGNYLAYGLGATACWVLGLPHGLAVLHGKTRRGGLVFDAADIIKDSMILPQAFISAQNGDSEKEFRQACIQNLLRFGALDIIIERLQQLALQGASDEYFAG
>NZ_CP015562.1|WP_014325848.1|827958_831279_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVSQCQKNALTETRRILDQFAERCGDRVWQTAITQAGLETLYKMLRQTARKNTAVACYWTHRKNSAELLWIVGDRRQFNDQGRVPTNRTQRNILRAEEEIAWQDAYSLQILTALSALLHDVGKSSVGFQTKLDKTKNAPRVADSYRHEWISVRLFEAMIEGCQTDQAWLERLANWQVFEETNPTWFSKIIQDRPNENHFSDFAYLPPLARRVIWLITSHHRLPFTHDISRSQDCIKNLRKYAKLTFESLFKAYKPAVGWVSNGAEHPTPQAFWQFQRVATQSQAWQKHMARWAKKALNHPALFSVSENADPFLLLLARLCLMTGDHYYSAQDQNEKLGELNFPLLANTYRENHQPKQRLDEHLIGVCQTAVRFARLLPKFPRELPRIKQHKPFVQLAKDRFAWQNKAVNVARLLQKTSESQGFFGVNMASTGCGKTLANAKMMYALNDSKQGARFTIALGLRVLTLQTGSALKKRLHLSDQDLAVLVGGSAVKKLYALQQEKQNQLAQQGSESAEDWLEDMQVEGATYIESAVENEAVLSFLSKDDKTKKLLYAPIVSCTLDHLISASESVRGGHHIVPILRLLTSDLILDEPDDFAQEDLPALSRLVYLAGLFGSRVLLSSATLTPDFITGLFKAYQAGRKIYNQQKGIVAALPICCAWVDEFQQVQANCGQDEQFIQQHDEFVRKRAENLAKSPVRRQAEILSLPSLKPREGEDLHYGLLADTLLQKAMALHDLHGQTDPHSQKKVSVGLIRFSNIEPMIPLAKALFALQASEKFADYQVHLCCYHSRQLLLLRSYLEEKLDKILDRHTPEQLFQHEEIALPMSQYKAKNHLFIVLGSPVTEVGRDHDYDWAIVDPSSMRSIIQLAGRVWRHRAEKVAEQPNIALLPINWRGLKVRYQQKDVIYHRPGFESHQHKLATHKLDQLISQRDLAHIQATPRIVKPEVLQASTQLADLEHHAIASLLNHPSENLVNLYWDPRYCNYLLANLPLMSEFRKSMAELEVVCVPDEDSHWGFGFYRAQKRDEETLSALPEIQYEPIQQDKHAVVQPWLAAALDTVLSDLAEQLNVVSPEWIAPTYLCASLPQYDGKLDWHYNEVYGFW
>NZ_CP015562.1|WP_005753664.1|831336_833193_+|response-regulator
MKNIKYFTQKYVDWVIRLGRLRFSILGVIVLAILALCTQALLSLFIIGEVYWVDMIRSVVFGLISAPFVIYFFTVLVEKLERSRLGLAKMVENLRKEVSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKLTETQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQKKLAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSVSDTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSCFTLMLPVKEVEKPVRVQNQMPSTLNILLVEDIEVNVVVAKSVLEKLGYVVDVAMTGQQAIEKFEQQYYDLLLLDIQLPDMSGFAVAKYLREGYENGQYDFLPPLIALTANVMHDKKEYQAQGMDDVLRKPLSIEELTACLVEYFGHDVSLCLETPTTHQITQDATHFDVKMLSELVEMLGTDFVLKNLALFKETMPEYMQALMTAYSVYQQDESQKADVLSCAHKIKGAAASVGLKRIQQIAAQAQDPEQGEWTENIHDWVQQLAQYWLLDVEALERYLNKSV
>NZ_CP015562.1|WP_005725867.1|833333_833924_+|hypothetical-protein
MKIFAVLSAFLMPFVVPNTTVNGYKDLRFGMTIEQAKETKLCEDQWHLPADDDWRRVVRGYWVCDKFRFDDGYAVARLRFIGGQLKSIELKMPEYPKYPAELLLHVLEEKYGKTIEVEQRDLIEEDILQGKIRKRRKNESALLDTYQFAKGTVSLTLLTYNGIPQPAEIIYSAPELLLLEKKLEDRPQRRTLLRDL
>NZ_CP015562.1|WP_014325849.1|833987_834791_-|inositol-1-monophosphatase
MNPMLNIAIRAARKAGNVIAKGYERRDALQTTLKSTNDYVTNIDKASEEAIIEVIRKSYPDHTIITEESGALEGKDSDIQWVIDPLDGTTNFVKGLPHFSVSIAIRVKGRTEVGVVYDPIRNELFTAVRGEGAKINDMRLRVENKRDLAGTVLTTGFPFKQTRLMPMQFAMMNNLIQDCADFRRMGSAALDLCYVAAGRVDGYFEVGVKAWDIAAGDLIVREAGGLVCDFNGGHSYLTSGHLVAAAPRIVKEILNKIQPCLSDEFKK
>NZ_CP015562.1|WP_014325850.1|835004_835721_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MLENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPLDEHAIALSAGAEDVLKQAKIVASFDEAVADCALVIGTSARLRHLQNSLIEPRECGTHAIVYAKQAPVAIVFGRERIGLTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPTHTEIEHFFQHTERLYTALGFIQNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEKRLK
>NZ_CP015562.1|WP_005721326.1|835799_836264_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRGPGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRGDCQEGTECLTHSLWKELSLRIEAFLNEITLEELVEKNRQKRATIEFRGDFDNLIILDN
>NZ_CP015562.1|WP_005721328.1|836311_837526_+|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYAATCPVDERVAKKMMEYLTVEGNFGNPASRSHKFGWQAEEAVDVARNHIADLIGADSREIVFTSGATESDNLAIKGAAHFYQSKGKHIITCKTEHKAVLDTCRQLEREGFEVTYLNPKSDGLIDLEELKNAMRDDTILVSIMHVNNEIGVIQDIAAIGELCRARKILFHVDATQSVGKLPINLAELKVDLMSMSSHKLYGPKGIGALYVSRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRICKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSNLNISFNYVEGESLMMALRDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRYTTEEEIDYTIELVKNAVAKLRELSPLWDMFKEGIDLNTIEWTHH
>NZ_CP015562.1|WP_005721377.1|837757_838144_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSNKVIDHYENPRNVGSLDKKDANVGTGMVGAPACGDVMQLQIKVSEEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDEAQAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKKEAK
>NZ_CP015562.1|WP_005721379.1|838213_838537_+|iron-sulfur-cluster-assembly-protein-IscA
MGISLTETAADRVRTFLANRGKGIGLRLGIKTSGCSGLAYVLEFVDELNPEDQVFEQHGVKIIVDAKSLVYLDGTELDFAKEGLNEGFKFNNPNVKDQCGCGESFHV

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Crispr_ID: NZ_CP015562_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015562_2

2101682-2102609

Unclear

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTTAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTTAAC	CRT
TTTCTAAGCTGCCTATACGGCAGTTAAC	PILER-CR

15 spacers

cas3

The CRISPR arrays of NZ_CP015562_2

>merge|NZ_CP015562|2|2101682-2102609|CRISPRCasFinder,CRT,PILER-CR
AATTGAAACTGCCTATACGGCAGTTAACACCAATCTGATAATCGAGCCAAGATCGCTTTATTTCTAAGCTGCCTACACGGCAGTTAACAAGAGCAGAAAACAGAAGAATTGGAAGATGACTTTCTAAGCTACCTATACGGCAGTTAACAGTGTAATTCCGCTCCGTTGCTTAAAATAATCTTTCTAAGCTGCCTACACGGCAGTTAACGTATGAGTTCGGCATTTGCAGAGCTTAAAGCTTTTCTAAGCTGCCTACACGGCAGTTAACTTGATCCTTTTACGCGTAAACAGAATGCTTTTTTTCTAAGCTGCCTATACGGCAGTTAACTATTCAGAATCAAAACGAATACCCAAAATTGCTTTCTAAGCTGCCTATACGGCAGTTAACCGGGTGCGCAAATGGTTTGCGACAAAAGGCGATTTCTAAGCTGCCTATACGGCAGTTAACCTGAAGAATCGAGAGCCGGTGGAGTTCTAAGTTTTCTAAGCTGCCTATACGGCAGTTAACATTCCTTTTCTTTTCAGAATTGATACCGCTTCTTTCTAAGCTGCCTATACGGCAGTTAACATCTGTAGCCGATGATGTAATTCAATCTTTTGTTTCTAAGCTGCCTATACGGCAGTTAACTCGCAAATTTTTGCGCTGGTGTAAGAGCTGTTTTTCTAAGCTGCCTATACGGCAGTTAACTAAAAAAATTGGTATTTCGCGCAAACGATCAATTTCTAAGCTGCCTATACGGCAGTTAACGCCCCGAAAGTTTCAAGCCAACACTTTCAAGCTTTCTAAGCTGCCTATACGGCAGTTAACGGTTGCAACAAATGCGTGATGAGCATTCAAAATTTCTAAGCTGCCTATACGGCAGTTAACAGGTACGGTTATCGGCAAATCCCGGTGCCCGCTTTCTAAGCTGCCTATACGGCAGTTAAC

>NZ_CP015562|2|2|2101682-2102609|CRISPRCasFinder
AATTGAAACTGCCTATACGGCAGTTAAC	ACCAATCTGATAATCGAGCCAAGATCGCTTTA
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTATACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TATTCAGAATCAAAACGAATACCCAAAATTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGGGTGCGCAAATGGTTTGCGACAAAAGGCGA
TTTCTAAGCTGCCTATACGGCAGTTAAC	CTGAAGAATCGAGAGCCGGTGGAGTTCTAAGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATTCCTTTTCTTTTCAGAATTGATACCGCTTC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATCTGTAGCCGATGATGTAATTCAATCTTTTG
TTTCTAAGCTGCCTATACGGCAGTTAAC	TCGCAAATTTTTGCGCTGGTGTAAGAGCTGTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TAAAAAAATTGGTATTTCGCGCAAACGATCAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCCCCGAAAGTTTCAAGCCAACACTTTCAAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GGTTGCAACAAATGCGTGATGAGCATTCAAAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AGGTACGGTTATCGGCAAATCCCGGTGCCCGC
TTTCTAAGCTGCCTATACGGCAGTTAAC

>NZ_CP015562|2|2|2101682-2102609|CRT
AATTGAAACTGCCTATACGGCAGTTAAC	ACCAATCTGATAATCGAGCCAAGATCGCTTTA
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTATACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TATTCAGAATCAAAACGAATACCCAAAATTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGGGTGCGCAAATGGTTTGCGACAAAAGGCGA
TTTCTAAGCTGCCTATACGGCAGTTAAC	CTGAAGAATCGAGAGCCGGTGGAGTTCTAAGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATTCCTTTTCTTTTCAGAATTGATACCGCTTC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATCTGTAGCCGATGATGTAATTCAATCTTTTG
TTTCTAAGCTGCCTATACGGCAGTTAAC	TCGCAAATTTTTGCGCTGGTGTAAGAGCTGTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TAAAAAAATTGGTATTTCGCGCAAACGATCAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCCCCGAAAGTTTCAAGCCAACACTTTCAAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GGTTGCAACAAATGCGTGATGAGCATTCAAAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AGGTACGGTTATCGGCAAATCCCGGTGCCCGC
TTTCTAAGCTGCCTATACGGCAGTTAAC

>NZ_CP015562|2|2|2101742-2102609|PILER-CR
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTATACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TATTCAGAATCAAAACGAATACCCAAAATTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGGGTGCGCAAATGGTTTGCGACAAAAGGCGA
TTTCTAAGCTGCCTATACGGCAGTTAAC	CTGAAGAATCGAGAGCCGGTGGAGTTCTAAGT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATTCCTTTTCTTTTCAGAATTGATACCGCTTC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATCTGTAGCCGATGATGTAATTCAATCTTTTG
TTTCTAAGCTGCCTATACGGCAGTTAAC	TCGCAAATTTTTGCGCTGGTGTAAGAGCTGTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TAAAAAAATTGGTATTTCGCGCAAACGATCAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCCCCGAAAGTTTCAAGCCAACACTTTCAAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GGTTGCAACAAATGCGTGATGAGCATTCAAAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AGGTACGGTTATCGGCAAATCCCGGTGCCCGC
TTTCTAAGCTGCCTATACGGCAGTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015562.1\|WP_005758065.1\|2089788_2091375_-\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NZ_CP015562.1\|WP_014326417.1\|2109644_2110214_+\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|367878
NZ_CP015562.1\|WP_005752888.1\|2112843_2113179_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP015562.1\|WP_016504414.1\|2110671_2112039_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP015562.1\|WP_014326411.1\|2097605_2099030_+\|PTS-sucrose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|131051
NZ_CP015562.1\|WP_016504355.1\|2093925_2094852_+\|aminoimidazole-riboside-kinase	unknown	unknown	gnl\|CDD\|236514
NZ_CP015562.1\|WP_005724855.1\|2108921_2109581_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP015562.1\|WP_014326410.1\|2096357_2097377_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|131470
NZ_CP015562.1\|WP_014326415.1\|2104196_2104910_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP015562.1\|WP_005758057.1\|2102756_2104085_-\|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236877
NZ_CP015562.1\|WP_014326419.1\|2112079_2112748_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380324
NZ_CP015562.1\|WP_014326416.1\|2105937_2108841_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP015562.1\|WP_014326414.1\|2100664_2101630_+\|lipopolysaccharide-heptosyltransferase-RfaC	unknown	unknown	gnl\|CDD\|236809
NZ_CP015562.1\|WP_005724904.1\|2091733_2093101_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP015562.1\|WP_014326407.1\|2093128_2093740_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|225467
NZ_CP015562.1\|WP_005719208.1\|2110219_2110648_+\|DUF2489-domain-containing-protein	unknown	unknown	gnl\|CDD\|378470
NZ_CP015562.1\|WP_014326412.1\|2099145_2099553_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|225403
NZ_CP015562.1\|WP_016504356.1\|2094889_2096332_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NZ_CP015562.1\|WP_014326413.1\|2099621_2100668_+\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|182835
NZ_CP015562.1\|WP_005724867.1\|2104957_2105662_-\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|225742

Protein	Function_ID	Function_description	E-value
NZ_CP015562.1\|WP_005758065.1\|2089788_2091375_-\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	6.14413e-167
NZ_CP015562.1\|WP_014326417.1\|2109644_2110214_+\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|367878	pfam04220, YihI, Der GTPase activator (YihI). YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI.	8.55528e-59
NZ_CP015562.1\|WP_005752888.1\|2112843_2113179_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.65249e-05
NZ_CP015562.1\|WP_016504414.1\|2110671_2112039_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_CP015562.1\|WP_014326411.1\|2097605_2099030_+\|PTS-sucrose-transporter-subunit-IIBC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NZ_CP015562.1\|WP_016504355.1\|2093925_2094852_+\|aminoimidazole-riboside-kinase	gnl\|CDD\|236514	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.	0
NZ_CP015562.1\|WP_005724855.1\|2108921_2109581_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	6.19774e-102
NZ_CP015562.1\|WP_014326410.1\|2096357_2097377_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|131470	TIGR02417, Fructose_repressor_Catabolite_repressor/activator., D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. [Regulatory functions, DNA interactions].	0
NZ_CP015562.1\|WP_014326415.1\|2104196_2104910_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	2.77606e-93
NZ_CP015562.1\|WP_005758057.1\|2102756_2104085_-\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
NZ_CP015562.1\|WP_014326419.1\|2112079_2112748_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	3.45531e-76
NZ_CP015562.1\|WP_014326416.1\|2105937_2108841_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP015562.1\|WP_014326414.1\|2100664_2101630_+\|lipopolysaccharide-heptosyltransferase-RfaC	gnl\|CDD\|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	0
NZ_CP015562.1\|WP_005724904.1\|2091733_2093101_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP015562.1\|WP_014326407.1\|2093128_2093740_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|225467	COG2915, COG2915, Uncharacterized protein involved in purine metabolism [General function prediction only].	9.09394e-109
NZ_CP015562.1\|WP_005719208.1\|2110219_2110648_+\|DUF2489-domain-containing-protein	gnl\|CDD\|378470	pfam10675, DUF2489, Protein of unknown function (DUF2489). This is a bacterial family of uncharacterized proteins.	1.12596e-47
NZ_CP015562.1\|WP_014326412.1\|2099145_2099553_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|225403	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and metabolism].	1.12449e-42
NZ_CP015562.1\|WP_016504356.1\|2094889_2096332_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	2.82868e-175
NZ_CP015562.1\|WP_014326413.1\|2099621_2100668_+\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|182835	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF.	0
NZ_CP015562.1\|WP_005724867.1\|2104957_2105662_-\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|225742	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism].	5.27246e-73

>NZ_CP015562.1|WP_014326414.1|2100664_2101630_+|lipopolysaccharide-heptosyltransferase-RfaC
MKICLIKTSSMGDILHSLPALTDAQRALPNLQVDWVVEESFAEIPHWHSAVRQVIPIALRRWRKTPFTALTRKQWKTYRTLLQSEQYDAVIDAQGLLKSALFATRLARGTRHGYDRHSIREPIAACFYDKKYAISYQQHAVERIRQLFAQSLNYPLPHTQGDYGIARHFPQHAQTMPYVLFFHGTTRQDKFLPDKQWRTLAEKLTAQGIQIHVPWSNPQEKQRAERIAQGLDLVTILPKSTLSELAQQIVNASAVVSVDTGLAHLSAALDKTNLTLYGATDPKLIGSYGKNQHYLVAESMDKIEADEIFQKLTALLSLNTI
>NZ_CP015562.1|WP_014326413.1|2099621_2100668_+|lipopolysaccharide-heptosyltransferase-II
MHILIIGPSWVGDMMMSHSLYQTLKQQYPQCEIDVMAPNWCKPLLERMPEVRQAITMPLGHGAFALGDRYRLGKALRHQYDMAIVLPNSLKSAFIPFFAKIPLRRGWKGESRYLFLNDLRSNKKDYPMMVQRYIALAFEKGAVPKAEDLPRPVPYLTVDPITQQHTLKKFEKQTALISPRPSIGFCPGAEFGPAKRWPHYHYAKLAEMLIQQGYAIRLFGSAKDEAVGEEIRQALPETMRHFCINLAGQTSLNEAVDLIADCTAIVTNDSGLMHIAAAVQRPLVALYGPTSPTYTPPLSEKAVIIRLIEDGLIKVRKGKDSDEGYHQSLIDIQPELVFDKLTGLLANT
>NZ_CP015562.1|WP_014326412.1|2099145_2099553_+|copper-chaperone-PCu(A)C
MKSLTQLLFILTALLPTSLFAHIHVEQAQMFSAKAGEPSAIFMNIHNTGNEDVSLALVQSDIRADIVLHGTQHGKMIEVTGINLPAHQMTALKRGGLHIMVFNVEQDLNAGDSFPLRLLFDNGEIMHIEAKIIQY
>NZ_CP015562.1|WP_014326411.1|2097605_2099030_+|PTS-sucrose-transporter-subunit-IIBC
MNFSQIAQQVIDKLGGKDNISAAAHCATRLRIVVKNENLIDKKGIENIEGVKGQFAVAGQYQIIFGSGTVNKVYAELSKLLGIGDMTTSEVAAAGTEKQGLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAKGFFVEEKNVVDLYPAIADLVDFINTIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALSDGWNYALTLTKGNIQYWHIFGLEIERVGYQGTVIPVLVASWVLATLEKNLRKVVPSFLDNLITPLFALFITGLLAFTVIGPIGREAGSLISTGLTWLYDTLGFVGGAIFGTLYAPIVITGMHQTFIAVETQLLAEVARTGGTFIFPIAAMSNIAQGAACLGAAYVMKDAKVRGIGVPSGISALLGITEPAMFGVNLRYRYPFISAMIGAGISSAVIALFNVKAIALGAAGLPGIPSIKPDSLAMYCVGMLISASIAFTLTVILGKRAQLKAE
>NZ_CP015562.1|WP_014326410.1|2096357_2097377_+|substrate-binding-domain-containing-protein
MSITNKKRITLSDIAKCCGLSTTTVSMILNNRGEEFKIKAETCQRVKAIAEQQGYRANVYAKSLKMQRSNVIGFVIPDLTNYGFACTAKILEKQCRENGLQLIITCSDDNPQQEKLAIERLLDRQIDFLITAPTHQDPSYYQKIGQHTPILQLDRYVPDLALNYVISNDSEHITALICRLCDQYQLTEFMYFGGQRTLSPSESRLAGFLQGLKQANLNLKKEWILHRTYQPESGYQMLAETEAKLGRLPQAIFTASYTLLEGVLRYLTEQKKMDLLLNRQLHLATFDDHDILNALPFHIHSIKQNHPQLAQQIFQHIMRYFAGKKSPNQKIDCDVIYRD
>NZ_CP015562.1|WP_016504356.1|2094889_2096332_+|glycoside-hydrolase-family-32-protein
MYIFNQGKYKSLHAQEVGELAQIRQHVLRDTQFRPTYHLAPETGLLNDPNGLVFDGEKYHIFYQWFPYAAIHGMKHWKHFITYDFHHFQAADPLIPDELFESHGCYSGGALLWQDQIVAFYTGNTRNAENQRIPHQNIAIFKKDGTLLKKRCLLNQAPTGYTEHVRDPKPFITEEGKIRFILGAQREDLSGTALIYEMTDLDATPQLIGEFKLPDFDNQQVFMWECPDLLKLQEQDLFLWSPQGKAQKTYCFQNHYHATYALGQYANLHFSAQHIEELDYGFDFYAPQSIQGSEGIYYAWVGLPDLTYPTDEYQWHSMLSLPRQFSIQQGILYQRPIPQVYAQCLPAHKYWVEGKQQIPHLDRSYVAFDAENQPFTLRFFTNQRGQQLILRYQNGILTLDRTYTTQTALMQQFGEQRHCILPQLNHVEIFFDRSVVEIFLNQGEKVMTSRFFIADRENALDSSRPLCVSVAELKPIILTP
>NZ_CP015562.1|WP_016504355.1|2093925_2094852_+|aminoimidazole-riboside-kinase
MGKIWVLGDAVVDLIPEGENTYLRCAGGAPANVAVGIARLGATTGFIGRVGDDPLGRFMLNKLQQENVCTQYMHLDPKQLTSTVIVDLKEGERSFTFMVNPSADQFLELSDLPHFNPNDWLHCCSIALINEPSRSSTFAAIHRIKAEGGFFSFDPNLRESLWNSPAEMKTVVNQVVALADVLKFSEEELLFLTDSDTLSDATAKLTQHYPDKLIIVTLGKLGATYYLQGKSQLISSKKALIPVDTTGAGDAFVSGLLFGISQVKNWQNPTALVEIIKQANACGALATTAKGAMSALPNKQQLDAFLAE
>NZ_CP015562.1|WP_014326407.1|2093128_2093740_-|high-frequency-lysogenization-protein-HflD
MANYYDITLALAGVCQAAKLVQQFAHEGQADQAAFETSLNTLLQIYPEDTLAVFGGKAQNLKLGLETLLEQMHGTGSDLSRYWISLLALESKLNKDPHAKAELARRIQYLPTQLEHDDLLDEQMLSTLASIYVDVISPLGKKIQVTGSTLYLQQLAMHHRIRACLLAGIRSAVLWRQVGGTKWQVLFSRRKIIAMAKQIYSSL
>NZ_CP015562.1|WP_005724904.1|2091733_2093101_-|adenylosuccinate-lyase
MQLNALTALSPIDGRYQDKVSSLRSIFSEFGLLKFRVTVEVRWLQKLAATDQIQEVSLLSQEANDYLNHIVENFSVQDAERIKEIERTTNHDVKAVEYFLKEKSEALPELAKISEFIHFACTSEDINNLSHALMLKTAREEVILPEWQNLIADISALANEYKTIPLLSRTHGQPASPSTIGKEMANVVYRLQRQFKQLQQIDILGKINGAVGNYNAHLSAYPDIDWHQFSEEFVTSLGLTWNPYTTQIEPHDYIAEFFDNVARFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGAKLPVSRWQRDLTDSTVLRNLGVGLGYCLIAYAATRKGISKLEVNEQHLRDELDQNWEVLAEPIQTVMRRYGIEKPYEKLKALTRGKRVDAEAMREFIETLDIPAQEKIRLQQMTPATYIGAAVELVEKL
>NZ_CP015562.1|WP_005758065.1|2089788_2091375_-|L-lactate-permease
MVFFLSILPIVLLIYLMVKRNSLPSYIALPLIAVLTYLLQAFYFGTDLTRLNANVIAGLIATQTPITIIFGAILFNRMMEVSGSTDVLRKWLANINPNPVAQIMIIGWAFAFMIEGASGFGTPAAIAAPILMGLGFKPLQVAMLALVMNSVPVSFGAVGTPTWFGFGPLGLSEDVVLEVGQKTAFIHFIAAFVIPVLALRFLVSWQQIKQNLVFIYISILACTIPYFLLAQVNYEFPALVGGAIGLFISILVANKGIGVSKTAQAEIQLEKVEFGVLVKALFPTMMLIAILIVTRIHQLGIKQLLNDATTWFSVSLGAFGEFKVSQALILSLNNILGQGINESYKTLYVPSLIPFIVTVIISIFVFKLNGTKAKTIAVSTYQQTKKPFFALLGALVMVKLMLVGNENYDSMVITIGKTFADVTGDKWVYFSSYLGAIGAFFSGSNTVSNLTFGGIQLSIAETTGMSVPLILALQSVGGAMGNMVCLNNIIAVCTVLNVSNQEGSILKRTVVPMFLYGVIAALVAVVIY
>NZ_CP015562.1|WP_005758057.1|2102756_2104085_-|ATP-dependent-RNA-helicase-SrmB
MTLATFQDFDLAPALLKALAKKGYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFASRLLTDPVQIDAEPSRRERKKIQQWYYHADSNEHKIKLLARFIDEEQVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLVATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKIKRYTQELLKARIIEGLAPRTKAPKEGEVKTVSKKQKARIKAKREEKQKQEQKKKVKLRHKDTKNIGKRRKSNTPPANAE
>NZ_CP015562.1|WP_014326415.1|2104196_2104910_+|tRNA1(Val)-(adenine(37)-N6)-methyltransferase
MSAKQNGFTFKQFHIEHHRCAMKVGTDGILLGAWADVSQAERILDLGTGTGLIALMLAQRSTKESEIHAVELDQAAYLQAQANIHASPWAQRVHVYQQDAAEFCRNAVNKFDLIVANPPYFPQGVDCATPQRDLARYTATHRHVDWLNWASHCLSEQGKISMVLPFEAGETLLKQTALYCIARCEVITKKGKAPQRLLLTFSLQAQPLQPSQLIIYDESNRYHPDFIGLTKDFYLAF
>NZ_CP015562.1|WP_005724867.1|2104957_2105662_-|nicotinamide-riboside-transporter-PnuC
MNLQAVKNEFLGGWKPFEVAWLSLFLIAQIVIYIQNPDSILGMISGISGILCVVFVSKGKVSNYFFGLIFAYTYFYVAWQANYLGEMNTVLYVYIPAQFIGYFLWRENLQKGSEGAESVIAKSLTLKGWAIVLGTITIGTLLFVQALNAAGGSSTGLDGLTTVIVVVAQLLMILRYREQWLLWIALNVISIVLWTQAKEGSLAMVTMYSAYLLNSLYGYYNWTKLEKAHRQSVQ
>NZ_CP015562.1|WP_014326416.1|2105937_2108841_+|RNA-polymerase-associated-protein-RapA
MTFAVGQRWMSESENNLGLGLIVAIDMRTVTILFPASEEQRIYALNSAPLTRVLFQIGDEIVHHEGWKGNVLDILENNGVAFYLLKRQDNGEEITIQERDIAHQMTFSKPQDRLFTTQIDRNEHFTLRYQALTHQQAQFQSPLRGLRGIRAGLIPHQLHIAREVGQRTAPRVLLADEVGLGKTIEAGMILQQQLFAEKVERVLIIVPETLQHQWLVEMLRRFNLHFALFDEERCADFEDPASALWINPFSTESQIICALDWLCEKPKRVEQLLEAGFDMLIVDEAHHLGWSEHNPSLEYQLVEQLARQIPAVLLLTATPEQLGQESHFARLSLLDPDRFYDYQAFVQEQQQYQPVADAVQSLLADKPLSTVEKNHIADLLSEQDVEPMLKVIDSQAHDEQKALARQELIDNLIDRHGTSRVLFRNTRQGVKSFPHRTYNQITLELPKQYNNAANVLAMLGEKSENDSFYPEQMFQKLNPDARWWEFDPRLAWLITFLKNHREEKVLVICRHANTAIQLEQALREKEAIRAAVFHEKLSIVERDRAAAYFAQQEDGAQVLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGRLDRIGQSRDIQIHVPCFADTAQVVLARWYHEGLNAFEETCPMGMTLFETHQTQLNKFLQKPTALEGFAEFVSLTRKQQHELKQALEKGRDRLLELNSNGGEQAQQLATDIAEQDSTTELVNFTLNLFDIIGVDQEDLGEKSIVITPASNMLVPDFPGLKEEGATVTFDRQLSLAREDVEFMSWDHPLIRHGIDLITSGDIGKSAVSLLINKALPAGTLLLEMIYVVEAQAPKGLQLTRFLPPTPIRLLLDQKGNNLAEQVSFNALQKQLKPIGKNMANKVVKMVRPNIEQLVKLSEQKIVAQAQQIIHNTQQLADQTLSAELNRLTALQAVNKNIRQDEVDALENIRSQSLAQLQQATWRLDSLRVIVSNKE
>NZ_CP015562.1|WP_005724855.1|2108921_2109581_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MALISYTPPTDPYLDIVHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEPAHRLDMSTSGLILFALSKAADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWENRPRQKICFERGKPALTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDKFYAPPQAKALSPRLCLHAEQLAFRHPITQEWLSFSAPPAF
>NZ_CP015562.1|WP_014326417.1|2109644_2110214_+|Der-GTPase-activating-protein-YihI
MARKKKTRRVSDIMPARKVDKKVELPKGKPGKKLTRYELDAKAREDKKKKKRKGLASGSRHSATENNNKHQALEKKDPRIGSRKKVPLVVEFVNKPEKGMTIPPMKLEEKLPKQDPMLELELLESNECLNQLLDDLEAGKTLSAEDQQFVDDCLDRIAELMDELGISEDDDPEEDLLRTFEKIDINQFR
>NZ_CP015562.1|WP_005719208.1|2110219_2110648_+|DUF2489-domain-containing-protein
MWTNILLILAVLVIVAMASYAGYLLLALQKQKKAIANMRTARSQRLTESIVIIAKAMQNGDCNHSEGVIRLKMLLDPLGKKLKNYQAMYQLYEVVMEMPTHEKRRELKKNERMRLDLQRESAEAELEQKIRLELQQLLIDMK
>NZ_CP015562.1|WP_016504414.1|2110671_2112039_+|oxygen-independent-coproporphyrinogen-III-oxidase
MSDIVWDLALIQKYNQSGPRYTSYPTALEFNENYTNQDFIQATKRYPNRPLSLYVHIPFCHKLCYFCACNKTITRHQHKADIYLDFLEREIENRASLFKNRIATQVHWGGGTPTYLTEQQSARLMAMLRKHFTIAPDAEISIEMDPREIELNMLDHLRRIGFNRMSMGVQDFNKDVQKAINRVQDEDFIEALLKRARELGFQSTNLDLIYGLPLQNVDSFMFTLQKVIALNPDRLSVFNYAHLPSRFAGQAKIKNEQLPAPETKLTILQKMIETLGDAGYKFIGMDHFAKPDDELAIAQKQGVLHRNFQGYTTQEECDLLGLGVSAISLLGDTYAQNQKELKHYYTAIDNTGIALHKGFAMSEEDCLRRDVIKQLICNFKLDYQPIEQQYGIQFTSHFAEDLKLLAPLSEDGLLTIGEKDIQVSAKGRLLIRNICLCFDTYSREQAKRQQFSRII
>NZ_CP015562.1|WP_014326419.1|2112079_2112748_+|NAD(P)H-dependent-oxidoreductase
MSISKTDILNAFHFRHACKAYDPSKKISEEDFRFILETGRLSPSSFGFEPWKFLVIENPDIKALIRDTAWGAKDKVMDCSHFVVVLVRQPETLLADGEYVQHMMRDIHHIPEEMRKIRQNFYRTFSEQDFALTENPKAFYDWACRQSYIALANMLTSAAMIGIDSTPIEGFPLEKMDHIFVEQGLYDPKTYKLSVMIAFGYRLNEPKAKTRQAFDDVVEWVR
>NZ_CP015562.1|WP_005752888.1|2112843_2113179_-|helix-turn-helix-transcriptional-regulator
MQITRRNASTKGASVAEIDRKKVRNEIIQAMLMGELSQGEALRKLRIEMFGINQQHYIQLVKVSRQTLSNIENDKGNYSVETINKVFKPFGLELGLVPVSKALLKELFSTA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015562_2	2.15\|2102550\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102550-2102581	32	NZ_CP015562.1	940228-940259	0	1.0

1. spacer 2.15|2102550|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to position: 940228-940259, mismatch: 0, identity: 1.0

aggtacggttatcggcaaatcccggtgcccgc	CRISPR spacer
aggtacggttatcggcaaatcccggtgcccgc	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015562_2	2.12\|2102370\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102370-2102401	32	NC_008193	Pasteurella phage F108, complete genome	7600-7631	0	1.0
NZ_CP015562_2	2.12\|2102370\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102370-2102401	32	DQ114220	Bacteriophage F108, complete genome	7600-7631	0	1.0
NZ_CP015562_2	2.1\|2101710\|32\|NZ_CP015562\|CRISPRCasFinder,CRT	2101710-2101741	32	MH238467	Pasteurella phage Pm86, complete genome	42601-42632	1	0.969
NZ_CP015562_2	2.4\|2101890\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101890-2101921	32	MH238466	Pasteurella phage AFS-2018a, complete genome	23770-23801	1	0.969
NZ_CP015562_2	2.3\|2101830\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101830-2101861	32	NC_008193	Pasteurella phage F108, complete genome	11445-11476	2	0.938
NZ_CP015562_2	2.3\|2101830\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101830-2101861	32	DQ114220	Bacteriophage F108, complete genome	11445-11476	2	0.938
NZ_CP015562_1	1.6\|826109\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826109-826140	32	NZ_CP017756	Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence	73488-73519	5	0.844
NZ_CP015562_2	2.7\|2102070\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102070-2102101	32	HQ110084	Erwinia phage ENT90, complete genome	19091-19122	5	0.844
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_KX086582	Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence	25794-25825	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_KF831355	Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence	23170-23201	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_AP018563	Staphylococcus argenteus strain 58113 plasmid p1, complete sequence	18411-18442	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NC_013327	Staphylococcus aureus plasmid pWBG749, complete sequence	26168-26199	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	CP030569	Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence	12940-12971	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	CP030458	Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence	15652-15683	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_AP017923	Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence	17835-17866	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NC_013325	Staphylococcus aureus plasmid pWBG745, complete sequence	13088-13119	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	CP030696	Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence	28191-28222	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	CP030710	Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence	7547-7578	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_CP012757	Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence	37721-37752	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_CP042004	Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence	11471-11502	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_CP047857	Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence	26882-26913	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	9160-9191	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_MH587575	Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence	17922-17953	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	NZ_MH587574	Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence	17842-17873	6	0.812
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	CP030603	Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence	34556-34587	6	0.812
NZ_CP015562_1	1.7\|826169\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826169-826200	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	465830-465861	7	0.781
NZ_CP015562_1	1.7\|826169\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826169-826200	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	650120-650151	7	0.781
NZ_CP015562_1	1.7\|826169\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826169-826200	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	1110688-1110719	7	0.781
NZ_CP015562_1	1.1\|825808\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	825808-825839	32	NC_021561	Vibrio phage pYD38-B genomic sequence	5301-5332	8	0.75
NZ_CP015562_1	1.5\|826049\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826049-826080	32	MN694758	Marine virus AFVG_250M853, complete genome	27038-27069	8	0.75
NZ_CP015562_1	1.5\|826049\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826049-826080	32	MN694774	Marine virus AFVG_250M941, complete genome	26488-26519	8	0.75
NZ_CP015562_1	1.5\|826049\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826049-826080	32	MN694077	Marine virus AFVG_250M852, complete genome	27041-27072	8	0.75
NZ_CP015562_1	1.5\|826049\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826049-826080	32	MN693487	Marine virus AFVG_25M100, complete genome	6473-6504	8	0.75
NZ_CP015562_1	1.5\|826049\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826049-826080	32	MN694586	Marine virus AFVG_250M370, complete genome	8206-8237	8	0.75
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	MK905543	Vibrio phage USC-1, complete genome	55483-55514	8	0.75
NZ_CP015562_2	2.2\|2101770\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2101770-2101801	32	MK358448	Vibrio phage 5, complete genome	209261-209292	8	0.75
NZ_CP015562_2	2.10\|2102250\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102250-2102281	32	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	49711-49742	8	0.75
NZ_CP015562_2	2.10\|2102250\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102250-2102281	32	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	49699-49730	8	0.75
NZ_CP015562_2	2.10\|2102250\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102250-2102281	32	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	49699-49730	8	0.75
NZ_CP015562_1	1.2\|825868\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	825868-825899	32	AM087120	Acidianus filamentous virus 3, partial viral genome	1603-1634	9	0.719
NZ_CP015562_1	1.2\|825868\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	825868-825899	32	MN693550	Marine virus AFVG_25M93, complete genome	8160-8191	9	0.719
NZ_CP015562_1	1.3\|825928\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	825928-825959	32	AM087120	Acidianus filamentous virus 3, partial viral genome	1603-1634	9	0.719
NZ_CP015562_1	1.3\|825928\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	825928-825959	32	MN693550	Marine virus AFVG_25M93, complete genome	8160-8191	9	0.719
NZ_CP015562_1	1.4\|825988\|33\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	825988-826020	33	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	11367-11399	9	0.727
NZ_CP015562_1	1.11\|826409\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826409-826440	32	LN846932	Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome	1949-1980	9	0.719
NZ_CP015562_2	2.7\|2102070\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102070-2102101	32	NZ_CP037949	Erwinia sp. QL-Z3 plasmid unnamed1, complete sequence	20626-20657	9	0.719
NZ_CP015562_2	2.7\|2102070\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102070-2102101	32	NC_014305	Erwinia billingiae Eb661 plasmid pEB170, complete sequence	99511-99542	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	MN689509	Lactococcus phage CHPC1175, complete genome	2767-2798	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	MN689521	Lactococcus phage CHPC836, complete genome	2787-2818	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	MN689516	Lactococcus phage CHPC148, complete genome	2895-2926	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	NC_004746	Lactococcus phage 4268, complete genome	16547-16578	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	MN534316	Lactococcus phage proPhi2, complete genome	17507-17538	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	AF323669	Bacteriophage bIL286, complete genome	20242-20273	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	MN689530	Lactococcus phage CHPC974, partial genome	2882-2913	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	AJ245616	Lactococcus lactis phage BK5-T complete genome	2890-2921	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	AF176025	Lactococcus phage BK5-T, complete genome	2890-2921	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	AF489521	Lactococcus bacteriophage 4268, complete genome	16547-16578	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	MN534317	Lactococcus phage proPhi4, complete genome	17507-17538	9	0.719
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	NC_002667	Lactococcus prophage bIL286, complete genome	20242-20273	9	0.719
NZ_CP015562_2	2.10\|2102250\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102250-2102281	32	NC_018694	Bacillus thuringiensis MC28 plasmid pMC54, complete sequence	2727-2758	9	0.719
NZ_CP015562_1	1.1\|825808\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	825808-825839	32	NZ_CP034301	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence	188762-188793	10	0.688
NZ_CP015562_1	1.5\|826049\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826049-826080	32	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	5680-5711	10	0.688
NZ_CP015562_1	1.5\|826049\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826049-826080	32	GU943040	Uncultured phage MedDCM-OCT-S09-C28 genomic sequence	16896-16927	10	0.688
NZ_CP015562_1	1.6\|826109\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826109-826140	32	NZ_CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	284092-284123	10	0.688
NZ_CP015562_1	1.12\|826469\|32\|NZ_CP015562\|PILER-CR,CRISPRCasFinder,CRT	826469-826500	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	505837-505868	10	0.688
NZ_CP015562_2	2.9\|2102190\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102190-2102221	32	NZ_CP044537	Borrelia sp. CA690 plasmid lp28-4, complete sequence	34383-34414	10	0.688
NZ_CP015562_2	2.12\|2102370\|32\|NZ_CP015562\|CRISPRCasFinder,CRT,PILER-CR	2102370-2102401	32	MK496701	Capybara microvirus Cap1_SP_93, complete genome	2200-2231	11	0.656

1. spacer 2.12|2102370|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 0, identity: 1.0

taaaaaaattggtatttcgcgcaaacgatcaa	CRISPR spacer
taaaaaaattggtatttcgcgcaaacgatcaa	Protospacer
********************************

2. spacer 2.12|2102370|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 0, identity: 1.0

taaaaaaattggtatttcgcgcaaacgatcaa	CRISPR spacer
taaaaaaattggtatttcgcgcaaacgatcaa	Protospacer
********************************

3. spacer 2.1|2101710|32|NZ_CP015562|CRISPRCasFinder,CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.969

accaatctgataatcgagccaagatcgcttta	CRISPR spacer
accaatctgataatcgagccaaaatcgcttta	Protospacer
**********************.*********

4. spacer 2.4|2101890|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 1, identity: 0.969

gtatgagttcggcatttgcagagcttaaagct	CRISPR spacer
gcatgagttcggcatttgcagagcttaaagct	Protospacer
*.******************************

5. spacer 2.3|2101830|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 2, identity: 0.938

agtgtaattccgctccgttgcttaaaataatc	CRISPR spacer
agtgtaattccgcgccattgcttaaaataatc	Protospacer
************* **.***************

6. spacer 2.3|2101830|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 2, identity: 0.938

agtgtaattccgctccgttgcttaaaataatc	CRISPR spacer
agtgtaattccgcgccattgcttaaaataatc	Protospacer
************* **.***************

7. spacer 1.6|826109|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017756 (Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

attcgatttccagtgccgaaaat-ccatgccct	CRISPR spacer
attcgatttctggtgccgaaaatggcttgccc-	Protospacer
**********..***********  * *****

8. spacer 2.7|2102070|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to HQ110084 (Erwinia phage ENT90, complete genome) position: , mismatch: 5, identity: 0.844

cgggtgcgcaaatggtttgcgacaaaaggcga	CRISPR spacer
cgcatccgcaaaaagtttgcgacaaaaggcga	Protospacer
** .* ****** .******************

9. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX086582 (Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

10. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KF831355 (Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

11. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018563 (Staphylococcus argenteus strain 58113 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

12. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NC_013327 (Staphylococcus aureus plasmid pWBG749, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

13. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to CP030569 (Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

14. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to CP030458 (Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

15. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017923 (Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

16. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NC_013325 (Staphylococcus aureus plasmid pWBG745, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

17. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to CP030696 (Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

18. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to CP030710 (Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

19. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012757 (Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

20. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042004 (Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

21. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047857 (Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

22. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012594 (Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

23. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587575 (Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

24. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

25. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to CP030603 (Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

26. spacer 1.7|826169|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

27. spacer 1.7|826169|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

28. spacer 1.7|826169|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

29. spacer 1.1|825808|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to NC_021561 (Vibrio phage pYD38-B genomic sequence) position: , mismatch: 8, identity: 0.75

acaacaaaaaacttgtgaacgtt----tagccgcaa	CRISPR spacer
acaacagaaaacttgtgaactttagagtaatc----	Protospacer
******.************* **    **..*

30. spacer 1.5|826049|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

31. spacer 1.5|826049|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to MN694774 (Marine virus AFVG_250M941, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

32. spacer 1.5|826049|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

33. spacer 1.5|826049|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to MN693487 (Marine virus AFVG_25M100, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

34. spacer 1.5|826049|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to MN694586 (Marine virus AFVG_250M370, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

35. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 8, identity: 0.75

aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
agtctgaggaaacagaagaattggaagacgat	Protospacer
*.    **.*******************.**.

36. spacer 2.2|2101770|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 8, identity: 0.75

aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
agtctgaggaaacagaagaattggaagacgat	Protospacer
*.    **.*******************.**.

37. spacer 2.10|2102250|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 8, identity: 0.75

atctgtagccgatgatgtaattcaatcttttg	CRISPR spacer
gtattcatccgatgatggaattgaatctttta	Protospacer
.* * .* ********* **** ********.

38. spacer 2.10|2102250|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 8, identity: 0.75

atctgtagccgatgatgtaattcaatcttttg	CRISPR spacer
gtattcatccgatgatggaattgaatctttta	Protospacer
.* * .* ********* **** ********.

39. spacer 2.10|2102250|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 8, identity: 0.75

atctgtagccgatgatgtaattcaatcttttg	CRISPR spacer
gtattcatccgatgatggaattgaatctttta	Protospacer
.* * .* ********* **** ********.

40. spacer 1.2|825868|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to AM087120 (Acidianus filamentous virus 3, partial viral genome) position: , mismatch: 9, identity: 0.719

attcgtgacaaaagacgaatataagaaaagaa	CRISPR spacer
aaggaaagaaaatgacgaatataagaaaagaa	Protospacer
*   . .. *** *******************

41. spacer 1.2|825868|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

attcgtgacaaaagacgaatataagaaaagaa	CRISPR spacer
gcttttatcaaaagaagaatataaaaaaagat	Protospacer
..*. *. ******* ********.******

42. spacer 1.3|825928|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to AM087120 (Acidianus filamentous virus 3, partial viral genome) position: , mismatch: 9, identity: 0.719

attcgtgacaaaagacgaatataagaaaagaa	CRISPR spacer
aaggaaagaaaatgacgaatataagaaaagaa	Protospacer
*   . .. *** *******************

43. spacer 1.3|825928|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

attcgtgacaaaagacgaatataagaaaagaa	CRISPR spacer
gcttttatcaaaagaagaatataaaaaaagat	Protospacer
..*. *. ******* ********.******

44. spacer 1.4|825988|33|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 9, identity: 0.727

gtcgttgaaacggcaccatgggcgtttgcattt	CRISPR spacer
ctgatggaaacgtcaccattggcgtttgcagcg	Protospacer
 * .* ****** ****** ********** .

45. spacer 1.11|826409|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 9, identity: 0.719

aagcccaccttgcgcttgaacagatgaattaa	CRISPR spacer
ttgctttccttgcgctttaacagatgtatttt	Protospacer
  **.. ********** ******** ***

46. spacer 2.7|2102070|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037949 (Erwinia sp. QL-Z3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgggtgcgcaaatggtttgcgacaaaaggcga	CRISPR spacer
atcattcgctgatggtttgcgacaaaaggccg	Protospacer
   .* *** .******************* .

47. spacer 2.7|2102070|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NC_014305 (Erwinia billingiae Eb661 plasmid pEB170, complete sequence) position: , mismatch: 9, identity: 0.719

cgggtgcgcaaatggtttgcgacaaaaggcga	CRISPR spacer
atcattcgctgatggtttgcgacaaaaggccg	Protospacer
   .* *** .******************* .

48. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

49. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MN689521 (Lactococcus phage CHPC836, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

50. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MN689516 (Lactococcus phage CHPC148, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

51. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NC_004746 (Lactococcus phage 4268, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

52. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MN534316 (Lactococcus phage proPhi2, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

53. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to AF323669 (Bacteriophage bIL286, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

54. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MN689530 (Lactococcus phage CHPC974, partial genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

55. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to AJ245616 (Lactococcus lactis phage BK5-T complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

56. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to AF176025 (Lactococcus phage BK5-T, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

57. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to AF489521 (Lactococcus bacteriophage 4268, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

58. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MN534317 (Lactococcus phage proPhi4, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

59. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NC_002667 (Lactococcus prophage bIL286, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

60. spacer 2.10|2102250|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NC_018694 (Bacillus thuringiensis MC28 plasmid pMC54, complete sequence) position: , mismatch: 9, identity: 0.719

atctgtagccgatgatgtaattcaatcttttg	CRISPR spacer
atctttagcagatgatgtaattcttcttgcag	Protospacer
**** **** *************  ..* . *

61. spacer 1.1|825808|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034301 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence) position: , mismatch: 10, identity: 0.688

acaacaaaaaacttgtgaacgtttagccgcaa	CRISPR spacer
aaaacaaaaaactcatgaacgtttatgtttct	Protospacer
* ***********..**********  . .

62. spacer 1.5|826049|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
tcgcggcaagaagatttaaccgtcatcgaaat	Protospacer
  .  .* ************ *****.****

63. spacer 1.5|826049|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to GU943040 (Uncultured phage MedDCM-OCT-S09-C28 genomic sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
gaaacactagaacttttaacggttcaggcggt	Protospacer
************  *********.   * ..

64. spacer 1.6|826109|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

attcgatttccagtgccgaaaatccatgccct	CRISPR spacer
gctgctgttccagccccgaaaatccatgccga	Protospacer
..*    ******. ***************

65. spacer 1.12|826469|32|NZ_CP015562|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

tttaagctacgtttatccgcaagattcactac	CRISPR spacer
acaaagccacggttatccgcaagattgtagag	Protospacer
 . ****.*** **************    *

66. spacer 2.9|2102190|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044537 (Borrelia sp. CA690 plasmid lp28-4, complete sequence) position: , mismatch: 10, identity: 0.688

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attgcttttcttttgagaattgacttcttcat	Protospacer
*** ********** ********. .* .. .

67. spacer 2.12|2102370|32|NZ_CP015562|CRISPRCasFinder,CRT,PILER-CR matches to MK496701 (Capybara microvirus Cap1_SP_93, complete genome) position: , mismatch: 11, identity: 0.656

taaaaaaattggtatttcgcgcaaacgatcaa	CRISPR spacer
caaaataattggtattacgcgcaagaaggtgc	Protospacer
.**** ********** *******. .. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

524594 : 571997

Mannheimia_phage(50.0%)

transposase,terminase,integrase,tail,tRNA

attL 526156:526201|attR 572419:572464

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014325699.1\|524594_526037_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
526156:526201	attL	NA	NA	NA	NA
WP_064775600.1\|526305_527478_-\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	5.9e-111	52.9
WP_051127937.1\|527853_528126_-	hypothetical protein	A0A0M3LQA6	Mannheimia_phage	4.9e-08	41.1
WP_016533427.1\|528424_528724_-	hypothetical protein	NA	NA	NA	NA
WP_016570062.1\|528733_529267_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	1.3e-20	36.6
WP_101766465.1\|529401_530001_-	hypothetical protein	A0A218KC93	Bacillus_phage	3.0e-18	34.2
WP_014391448.1\|530051_530840_-	DUF2303 family protein	C5IHK3	Burkholderia_virus	3.2e-20	29.2
WP_016570064.1\|530911_531265_-	hypothetical protein	I6XKT1	Burkholderia_virus	1.7e-05	31.8
WP_016533530.1\|531307_531499_-	hypothetical protein	NA	NA	NA	NA
WP_016570065.1\|531510_531975_-	single-stranded DNA-binding protein	A0A2I7RK19	Vibrio_phage	6.1e-35	69.0
WP_064775601.1\|531978_532590_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	6.3e-88	76.4
WP_016533454.1\|532582_533434_-	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	4.8e-62	63.9
WP_016570067.1\|533437_534424_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	5.8e-51	39.9
WP_016570068.1\|534601_534838_-	hypothetical protein	NA	NA	NA	NA
WP_064775602.1\|534824_535109_-	hypothetical protein	NA	NA	NA	NA
WP_014390710.1\|535175_535487_+	hypothetical protein	NA	NA	NA	NA
WP_016569990.1\|535548_536184_-	antirepressor	A6XMM0	Bacillus_virus	2.1e-22	53.3
WP_014391102.1\|536645_537179_-	hypothetical protein	NA	NA	NA	NA
WP_014391456.1\|537266_537530_-	hypothetical protein	NA	NA	NA	NA
WP_016533507.1\|537754_537985_-	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	3.4e-10	52.8
WP_016533476.1\|538603_538987_-	hypothetical protein	NA	NA	NA	NA
WP_016533477.1\|538983_539463_-	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	8.3e-19	47.1
WP_016533478.1\|539465_539729_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_064775603.1\|539874_540564_-	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	1.7e-73	58.2
WP_005720263.1\|540691_540901_+	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	5.5e-12	52.3
WP_014391093.1\|540969_541197_+	hypothetical protein	NA	NA	NA	NA
WP_064775604.1\|541254_541956_+	DNA-binding protein	A0A2I7RHG4	Vibrio_phage	7.1e-35	55.8
WP_014390722.1\|541952_542306_+	HNH endonuclease	A0A1C9LVX4	Vibrio_phage	1.3e-08	33.6
WP_016533442.1\|542307_543210_+	hypothetical protein	A0A0U4JX08	Bacillus_phage	5.5e-32	37.7
WP_016533441.1\|543209_543899_+	replication protein P	D0UIL4	Aggregatibacter_phage	1.4e-32	34.1
WP_041423202.1\|543908_544439_+	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.0e-54	58.9
WP_016569985.1\|544428_544887_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	5.8e-38	53.4
WP_016533468.1\|544960_545173_+	hypothetical protein	NA	NA	NA	NA
WP_064775605.1\|545260_545863_+	recombinase NinG	H6WRY9	Salmonella_phage	6.3e-32	38.2
WP_016533470.1\|545862_546228_+	hypothetical protein	A0A0M3LR87	Mannheimia_phage	3.5e-09	27.3
WP_143930513.1\|546417_546603_+	hypothetical protein	NA	NA	NA	NA
WP_014391475.1\|546816_547077_+	hypothetical protein	NA	NA	NA	NA
WP_014667794.1\|547073_547604_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.7e-45	50.9
WP_014667795.1\|547576_547900_+	DUF2570 family protein	NA	NA	NA	NA
WP_064775606.1\|547805_548087_+	hypothetical protein	NA	NA	NA	NA
WP_014390736.1\|548121_548556_-	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	1.0e-20	38.0
WP_016533497.1\|548584_548767_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	3.8e-09	54.2
WP_014390737.1\|548849_549347_+\|terminase	terminase	C7U0W1	Enterobacteria_phage	7.4e-47	70.7
WP_016533292.1\|549330_550557_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	9.4e-192	77.0
WP_016533291.1\|550571_552017_+	DUF1073 domain-containing protein	A0A0M3LPQ5	Mannheimia_phage	2.4e-146	58.6
WP_014390740.1\|551970_552942_+	hypothetical protein	F1C5D8	Cronobacter_phage	1.6e-53	41.0
WP_016533290.1\|552956_554303_+	hypothetical protein	A0A0M3LQ78	Mannheimia_phage	4.0e-127	55.3
WP_016533289.1\|554302_554737_+	hypothetical protein	A0A0M3LPQ2	Mannheimia_phage	1.1e-54	75.7
WP_016533288.1\|554748_555747_+	hypothetical protein	A0A0M3LQZ1	Mannheimia_phage	9.1e-145	74.7
WP_042743192.1\|556291_556660_+	hypothetical protein	A0A0M3LQS8	Mannheimia_phage	4.7e-22	42.1
WP_014390746.1\|556662_557007_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	3.0e-31	57.9
WP_014390747.1\|557011_557383_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.3e-24	51.2
WP_016533319.1\|557379_557751_+	hypothetical protein	NA	NA	NA	NA
WP_014390749.1\|557762_558245_+\|tail	phage tail protein	A0A0M3LPR0	Mannheimia_phage	2.0e-44	62.0
WP_016533320.1\|558298_558970_+	hypothetical protein	A0A0M3LPR4	Mannheimia_phage	1.5e-42	42.9
WP_016533321.1\|559000_559465_+	hypothetical protein	A0A0M3LR40	Mannheimia_phage	5.2e-34	50.0
WP_016533322.1\|559532_559928_+	hypothetical protein	A0A0M3LR23	Mannheimia_phage	7.7e-55	83.2
WP_042743193.1\|559986_562431_+\|tail	tail length tape measure protein	A0A0M3LSE2	Mannheimia_phage	1.6e-150	57.0
WP_014390756.1\|562433_562763_+	Gifsy-1 prophage VmtM	S5MW28	Escherichia_phage	3.2e-14	37.1
WP_023430089.1\|562852_563566_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	2.1e-82	63.9
WP_016569980.1\|563570_564314_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	7.4e-83	59.6
WP_014667799.1\|564256_564877_+\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	1.1e-52	57.4
WP_101766466.1\|564880_569884_+\|tail	phage tail protein	A0A0M3LQ61	Mannheimia_phage	2.5e-251	38.9
WP_064775609.1\|569931_570258_+	hypothetical protein	NA	NA	NA	NA
WP_064775610.1\|570397_571534_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_005720092.1\|571580_571997_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
572419:572464	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1593354 : 1602712

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014326205.1\|1593354_1594629_+	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	1.8e-92	49.5
WP_005753554.1\|1594669_1595287_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_014326206.1\|1595286_1596174_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_005724296.1\|1596243_1597191_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.9e-43	38.7
WP_005753553.1\|1597266_1598820_-	murein DD-endopeptidase MepM	A0A2K9VGT1	Pontimonas_phage	8.4e-20	49.6
WP_010906540.1\|1599054_1599846_+	zinc ABC transporter ATP-binding protein ZnuC	A0A2K9L3Z8	Tupanvirus	3.7e-16	32.8
WP_005724066.1\|1599854_1600640_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_005724065.1\|1600716_1601697_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-15	26.4
WP_014326208.1\|1601713_1602712_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-15	29.4

DBSCAN-SWA_3

1953735 : 2011673

Mannheimia_phage(36.17%)

transposase,terminase,integrase,tail,holin,head

attL 1959615:1959665|attR 2012125:2012175

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014326374.1\|1953735_1956567_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	57.3
WP_005719438.1\|1956738_1957239_+	single-stranded DNA-binding protein	I3PUY5	Vibrio_phage	4.0e-40	55.6
WP_014325726.1\|1957421_1957886_+\|transposase	IS200/IS605 family transposase	A0A0A8WIU6	Clostridium_phage	2.3e-13	36.1
WP_005725034.1\|1958462_1959317_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.8e-31	40.3
1959615:1959665	attL	NA	NA	NA	NA
WP_014391441.1\|1959691_1960747_-\|integrase	site-specific integrase	A0A077KGX2	Edwardsiella_phage	1.6e-62	37.9
WP_075271365.1\|1960650_1960953_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014391442.1\|1961136_1961859_-	DNA-binding protein	G0ZND1	Cronobacter_phage	3.3e-35	52.5
WP_064775645.1\|1961869_1962091_-	hypothetical protein	NA	NA	NA	NA
WP_015691048.1\|1962335_1963244_-	hypothetical protein	A0A0M4S6X1	Salmonella_phage	2.5e-40	36.1
WP_064775646.1\|1963347_1963836_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	3.2e-34	51.2
WP_080637896.1\|1963847_1964060_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_016533502.1\|1964047_1964413_-	hypothetical protein	NA	NA	NA	NA
WP_064775647.1\|1964409_1965009_-	hypothetical protein	A0A218KC93	Bacillus_phage	3.9e-18	34.2
WP_014391448.1\|1965059_1965848_-	DUF2303 family protein	C5IHK3	Burkholderia_virus	3.2e-20	29.2
WP_016570064.1\|1965919_1966273_-	hypothetical protein	I6XKT1	Burkholderia_virus	1.7e-05	31.8
WP_016533530.1\|1966315_1966507_-	hypothetical protein	NA	NA	NA	NA
WP_016570065.1\|1966518_1966983_-	single-stranded DNA-binding protein	A0A2I7RK19	Vibrio_phage	6.1e-35	69.0
WP_064775601.1\|1966986_1967598_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	6.3e-88	76.4
WP_016533454.1\|1967590_1968442_-	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	4.8e-62	63.9
WP_016570067.1\|1968445_1969432_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	5.8e-51	39.9
WP_016570068.1\|1969609_1969846_-	hypothetical protein	NA	NA	NA	NA
WP_064775602.1\|1969832_1970117_-	hypothetical protein	NA	NA	NA	NA
WP_014390710.1\|1970183_1970495_+	hypothetical protein	NA	NA	NA	NA
WP_016570070.1\|1970556_1971204_-	hypothetical protein	Q7Y5V4	Haemophilus_phage	3.5e-36	64.2
WP_016533491.1\|1971469_1972015_-	hypothetical protein	NA	NA	NA	NA
WP_016533507.1\|1972606_1972837_-	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	3.4e-10	52.8
WP_016533476.1\|1973455_1973839_-	hypothetical protein	NA	NA	NA	NA
WP_016533477.1\|1973835_1974315_-	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	8.3e-19	47.1
WP_016533478.1\|1974317_1974581_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_064775603.1\|1974726_1975416_-	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	1.7e-73	58.2
WP_005720263.1\|1975543_1975753_+	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	5.5e-12	52.3
WP_014391093.1\|1975821_1976049_+	hypothetical protein	NA	NA	NA	NA
WP_064775604.1\|1976106_1976808_+	DNA-binding protein	A0A2I7RHG4	Vibrio_phage	7.1e-35	55.8
WP_014390722.1\|1976804_1977158_+	HNH endonuclease	A0A1C9LVX4	Vibrio_phage	1.3e-08	33.6
WP_016533442.1\|1977159_1978062_+	hypothetical protein	A0A0U4JX08	Bacillus_phage	5.5e-32	37.7
WP_016533441.1\|1978061_1978751_+	replication protein P	D0UIL4	Aggregatibacter_phage	1.4e-32	34.1
WP_041423202.1\|1978760_1979291_+	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.0e-54	58.9
WP_016569985.1\|1979280_1979739_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	5.8e-38	53.4
WP_016533468.1\|1979812_1980025_+	hypothetical protein	NA	NA	NA	NA
WP_064775605.1\|1980112_1980715_+	recombinase NinG	H6WRY9	Salmonella_phage	6.3e-32	38.2
WP_016533470.1\|1980714_1981080_+	hypothetical protein	A0A0M3LR87	Mannheimia_phage	3.5e-09	27.3
WP_143930513.1\|1981269_1981455_+	hypothetical protein	NA	NA	NA	NA
WP_016533461.1\|1981668_1982034_+\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_016533462.1\|1982005_1982590_+	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	6.5e-58	55.3
WP_016569983.1\|1982592_1982916_+	DUF2570 family protein	NA	NA	NA	NA
WP_064775648.1\|1983194_1983551_+	hypothetical protein	NA	NA	NA	NA
WP_064775649.1\|1983680_1983935_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064775650.1\|1983922_1984303_-	hypothetical protein	NA	NA	NA	NA
WP_064775651.1\|1984441_1985143_+	hypothetical protein	NA	NA	NA	NA
WP_016533416.1\|1985129_1985558_+	hypothetical protein	NA	NA	NA	NA
WP_081273988.1\|1985873_1986464_+	hypothetical protein	A0A2H4J1J5	uncultured_Caudovirales_phage	4.9e-21	39.5
WP_064775652.1\|1986466_1987738_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	8.6e-148	61.7
WP_064775653.1\|1987747_1989151_+	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	4.4e-153	59.6
WP_064775738.1\|1989140_1990742_+\|head	phage head morphogenesis protein	A0A0M3LQ07	Mannheimia_phage	3.3e-152	52.1
WP_015691070.1\|1990744_1990963_+	hypothetical protein	NA	NA	NA	NA
WP_015691071.1\|1990937_1991372_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	D0UIJ3	Aggregatibacter_phage	3.1e-41	61.2
WP_015691073.1\|1991707_1992478_+	hypothetical protein	A0A1V0DY60	Dinoroseobacter_phage	1.5e-25	36.2
WP_015691074.1\|1992495_1993653_+	hypothetical protein	G8C7P7	Escherichia_phage	8.3e-81	43.3
WP_015691075.1\|1993709_1993946_+	hypothetical protein	NA	NA	NA	NA
WP_015691076.1\|1993962_1994430_+	hypothetical protein	A0A0M3LSP7	Mannheimia_phage	1.4e-34	55.7
WP_015691077.1\|1994431_1994806_+	hypothetical protein	NA	NA	NA	NA
WP_015691078.1\|1994807_1995209_+	HK97 gp10 family phage protein	A0A0M3LPJ5	Mannheimia_phage	2.1e-39	61.4
WP_015691079.1\|1995208_1995601_+	hypothetical protein	A0A0M3LQB6	Mannheimia_phage	5.5e-29	46.2
WP_016533104.1\|1995613_1996630_+	hypothetical protein	A0A0M3LQ19	Mannheimia_phage	7.6e-131	69.9
WP_016533103.1\|1996702_1997119_+	hypothetical protein	NA	NA	NA	NA
WP_016533102.1\|1997488_1997818_+\|tail	phage tail protein	A0A0M3LQW6	Mannheimia_phage	4.8e-26	49.1
WP_064775655.1\|1998122_1998818_+	hypothetical protein	NA	NA	NA	NA
WP_064775657.1\|2001651_2002356_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	1.6e-82	64.1
WP_101766477.1\|2002358_2003099_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	8.7e-84	60.0
WP_014667799.1\|2003041_2003662_+\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	1.1e-52	57.4
WP_081317749.1\|2003665_2009560_+	DUF1983 domain-containing protein	A0A0M3LQG1	Mannheimia_phage	1.6e-257	36.1
WP_064775609.1\|2009607_2009934_+	hypothetical protein	NA	NA	NA	NA
WP_064775610.1\|2010073_2011210_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_005720092.1\|2011256_2011673_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
2012125:2012175	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015562

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection