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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015569 Pasteurella multocida strain USDA-ARS-USMARC-60385 chromosome, complete genome 2 crisprs csa3,DEDDh,cas3,cas8f,cas5f,cas7f,cas6f,cas1,cas3-cas2,DinG 0 8 165 0

Results visualization

1. NZ_CP015569
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015569_1 152480-152808 Unclear I-F
5 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015569_2 1325209-1325477 TypeI-F NA
4 spacers
cas6f,cas7f,cas5f,cas8f,cas1,cas3-cas2

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015569_1 1.1|152508|33|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152508-152540 33 NC_008193 Pasteurella phage F108, complete genome 16631-16663 0 1.0
NZ_CP015569_1 1.1|152508|33|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152508-152540 33 DQ114220 Bacteriophage F108, complete genome 16631-16663 0 1.0
NZ_CP015569_1 1.5|152749|32|NZ_CP015569|CRISPRCasFinder,CRT 152749-152780 32 MH238467 Pasteurella phage Pm86, complete genome 42601-42632 1 0.969
NZ_CP015569_1 1.3|152629|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152629-152660 32 NC_008193 Pasteurella phage F108, complete genome 11445-11476 2 0.938
NZ_CP015569_1 1.3|152629|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152629-152660 32 DQ114220 Bacteriophage F108, complete genome 11445-11476 2 0.938
NZ_CP015569_2 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325237-1325268 32 NC_003315 Haemophilus phage HP2, complete genome 26899-26930 2 0.938
NZ_CP015569_2 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325237-1325268 32 AY027935 Haemophilus influenzae phage HP2, complete genome 26899-26930 2 0.938
NZ_CP015569_2 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325237-1325268 32 U24159 Bacteriophage HP1 strain HP1c1, complete genome 27719-27750 3 0.906
NZ_CP015569_2 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325237-1325268 32 NC_001697 Haemophilus phage HP1, complete genome 27719-27750 3 0.906
NZ_CP015569_2 2.4|1325418|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325418-1325449 32 NZ_CP017756 Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence 73488-73519 5 0.844
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_KX086582 Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence 25794-25825 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_KF831355 Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence 23170-23201 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_AP018563 Staphylococcus argenteus strain 58113 plasmid p1, complete sequence 18411-18442 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NC_013327 Staphylococcus aureus plasmid pWBG749, complete sequence 26168-26199 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 CP030569 Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence 12940-12971 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 CP030458 Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence 15652-15683 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_AP017923 Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence 17835-17866 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NC_013325 Staphylococcus aureus plasmid pWBG745, complete sequence 13088-13119 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 CP030696 Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence 28191-28222 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 CP030710 Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence 7547-7578 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_CP012757 Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence 37721-37752 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_CP042004 Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence 11471-11502 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_CP047857 Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence 26882-26913 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_CP012594 Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence 9160-9191 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_MH587575 Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence 17922-17953 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 NZ_MH587574 Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence 17842-17873 6 0.812
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 CP030603 Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence 34556-34587 6 0.812
NZ_CP015569_2 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325237-1325268 32 MN693155 Marine virus AFVG_25M94, complete genome 42117-42148 7 0.781
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 MK905543 Vibrio phage USC-1, complete genome 55483-55514 8 0.75
NZ_CP015569_1 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 152689-152720 32 MK358448 Vibrio phage 5, complete genome 209261-209292 8 0.75
NZ_CP015569_2 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325358-1325389 32 MN694758 Marine virus AFVG_250M853, complete genome 27038-27069 8 0.75
NZ_CP015569_2 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325358-1325389 32 MN694774 Marine virus AFVG_250M941, complete genome 26488-26519 8 0.75
NZ_CP015569_2 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325358-1325389 32 MN694077 Marine virus AFVG_250M852, complete genome 27041-27072 8 0.75
NZ_CP015569_2 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325358-1325389 32 MN693487 Marine virus AFVG_25M100, complete genome 6473-6504 8 0.75
NZ_CP015569_2 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325358-1325389 32 MN694586 Marine virus AFVG_250M370, complete genome 8206-8237 8 0.75
NZ_CP015569_2 2.2|1325297|33|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325297-1325329 33 NC_048656 Klebsiella phage vB_KpnM_BIS47, complete genome 11367-11399 9 0.727
NZ_CP015569_2 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325358-1325389 32 NZ_CP026928 Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence 5680-5711 10 0.688
NZ_CP015569_2 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325358-1325389 32 GU943040 Uncultured phage MedDCM-OCT-S09-C28 genomic sequence 16896-16927 10 0.688
NZ_CP015569_2 2.4|1325418|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT 1325418-1325449 32 NZ_CP025547 Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence 284092-284123 10 0.688

1. spacer 1.1|152508|33|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 0, identity: 1.0

gcagaccgagcgcacgcgagattgtcgcgacgc	CRISPR spacer
gcagaccgagcgcacgcgagattgtcgcgacgc	Protospacer
*********************************

2. spacer 1.1|152508|33|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 0, identity: 1.0

gcagaccgagcgcacgcgagattgtcgcgacgc	CRISPR spacer
gcagaccgagcgcacgcgagattgtcgcgacgc	Protospacer
*********************************

3. spacer 1.5|152749|32|NZ_CP015569|CRISPRCasFinder,CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.969

taaagcgatcttggctcgattatcagattggt	CRISPR spacer
taaagcgattttggctcgattatcagattggt	Protospacer
*********.**********************

4. spacer 1.3|152629|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 2, identity: 0.938

gattattttaagcaacggagcggaattacact	CRISPR spacer
gattattttaagcaatggcgcggaattacact	Protospacer
***************.** *************

5. spacer 1.3|152629|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 2, identity: 0.938

gattattttaagcaacggagcggaattacact	CRISPR spacer
gattattttaagcaatggcgcggaattacact	Protospacer
***************.** *************

6. spacer 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NC_003315 (Haemophilus phage HP2, complete genome) position: , mismatch: 2, identity: 0.938

attagctgaagaccgatttattagaaatacag	CRISPR spacer
attagctgaagaccgatttattagaaatgcat	Protospacer
****************************.** 

7. spacer 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to AY027935 (Haemophilus influenzae phage HP2, complete genome) position: , mismatch: 2, identity: 0.938

attagctgaagaccgatttattagaaatacag	CRISPR spacer
attagctgaagaccgatttattagaaatgcat	Protospacer
****************************.** 

8. spacer 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to U24159 (Bacteriophage HP1 strain HP1c1, complete genome) position: , mismatch: 3, identity: 0.906

attagctgaagaccgatttattagaaatacag	CRISPR spacer
acttgcggaagaccgatttattagaaatacag	Protospacer
*.* ** *************************

9. spacer 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NC_001697 (Haemophilus phage HP1, complete genome) position: , mismatch: 3, identity: 0.906

attagctgaagaccgatttattagaaatacag	CRISPR spacer
acttgcggaagaccgatttattagaaatacag	Protospacer
*.* ** *************************

10. spacer 2.4|1325418|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017756 (Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

attcgatttccagtgccgaaaat-ccatgccct	CRISPR spacer
attcgatttctggtgccgaaaatggcttgccc-	Protospacer
**********..***********  * ***** 

11. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX086582 (Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

12. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KF831355 (Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

13. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018563 (Staphylococcus argenteus strain 58113 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

14. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NC_013327 (Staphylococcus aureus plasmid pWBG749, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

15. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to CP030569 (Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

16. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to CP030458 (Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

17. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017923 (Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

18. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NC_013325 (Staphylococcus aureus plasmid pWBG745, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

19. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to CP030696 (Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

20. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to CP030710 (Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

21. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012757 (Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

22. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042004 (Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

23. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047857 (Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

24. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012594 (Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

25. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH587575 (Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

26. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

27. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to CP030603 (Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

28. spacer 2.1|1325237|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to MN693155 (Marine virus AFVG_25M94, complete genome) position: , mismatch: 7, identity: 0.781

attagctg-aagaccgatttattagaaatacag	CRISPR spacer
-tacgttgttagaccaatttataagaaatacag	Protospacer
 *  *.**  *****.****** **********

29. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 8, identity: 0.75

gtcatcttccaattcttctgttttctgctctt	CRISPR spacer
atcgtcttccaattcttctgtttcctcagact	Protospacer
.**.*******************.**    .*

30. spacer 1.4|152689|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 8, identity: 0.75

gtcatcttccaattcttctgttttctgctctt	CRISPR spacer
atcgtcttccaattcttctgtttcctcagact	Protospacer
.**.*******************.**    .*

31. spacer 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

32. spacer 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to MN694774 (Marine virus AFVG_250M941, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

33. spacer 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

34. spacer 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to MN693487 (Marine virus AFVG_25M100, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

35. spacer 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to MN694586 (Marine virus AFVG_250M370, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

36. spacer 2.2|1325297|33|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 9, identity: 0.727

gtcgttgaaacggcaccatgggcgtttgcattt	CRISPR spacer
ctgatggaaacgtcaccattggcgtttgcagcg	Protospacer
 * .* ****** ****** ********** . 

37. spacer 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
tcgcggcaagaagatttaaccgtcatcgaaat	Protospacer
  .  .* ************ *****.**** 

38. spacer 2.3|1325358|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to GU943040 (Uncultured phage MedDCM-OCT-S09-C28 genomic sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
gaaacactagaacttttaacggttcaggcggt	Protospacer
************  *********.   * .. 

39. spacer 2.4|1325418|32|NZ_CP015569|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

attcgatttccagtgccgaaaatccatgccct	CRISPR spacer
gctgctgttccagccccgaaaatccatgccga	Protospacer
..*    ******. ***************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 3620 3 Clostridium_phage(50.0%) transposase NA
DBSCAN-SWA_2 12415 : 13930 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_3 34553 : 38308 4 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_4 45674 : 49939 3 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_5 53316 : 61386 7 Escherichia_phage(60.0%) NA NA
DBSCAN-SWA_6 64585 : 68541 4 Escherichia_phage(100.0%) integrase attL 57562:57576|attR 68920:68934
DBSCAN-SWA_7 71916 : 78445 4 Lactobacillus_prophage(50.0%) NA NA
DBSCAN-SWA_8 84269 : 86276 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_9 99725 : 101102 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_10 116995 : 118060 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 128797 : 129505 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_12 136603 : 139186 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_13 146247 : 152332 4 uncultured_Mediterranean_phage(66.67%) tRNA NA
DBSCAN-SWA_14 158157 : 162756 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_15 170527 : 170788 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_16 177992 : 185278 8 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_17 193535 : 212410 19 Vibrio_phage(20.0%) NA NA
DBSCAN-SWA_18 215463 : 217442 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_19 225176 : 226396 2 Trichoplusia_ni_ascovirus(50.0%) NA NA
DBSCAN-SWA_20 230500 : 231772 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_21 235719 : 237818 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_22 243177 : 289772 64 Mannheimia_phage(43.18%) terminase,holin,transposase,integrase,tail attL 242382:242432|attR 287529:287579
DBSCAN-SWA_23 294890 : 296048 1 Halovirus(100.0%) NA NA
DBSCAN-SWA_24 305179 : 313414 9 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_25 318261 : 319878 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_26 336045 : 336696 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_27 352518 : 359250 6 Bacillus_virus(50.0%) transposase NA
DBSCAN-SWA_28 366416 : 366983 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_29 375472 : 382356 3 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_30 398577 : 399503 2 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_31 407593 : 409122 2 Synechococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_32 415391 : 415856 1 Clostridium_phage(100.0%) transposase NA
DBSCAN-SWA_33 425989 : 428018 2 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_34 436764 : 438264 1 Klebsiella_phage(100.0%) NA NA
DBSCAN-SWA_35 446423 : 448238 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_36 458902 : 460273 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_37 475272 : 477886 3 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_38 487889 : 488354 1 Clostridium_phage(100.0%) transposase NA
DBSCAN-SWA_39 496209 : 497202 1 Heterosigma_akashiwo_virus(100.0%) NA NA
DBSCAN-SWA_40 505165 : 508725 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_41 523335 : 524457 1 Thermus_phage(100.0%) NA NA
DBSCAN-SWA_42 527683 : 532198 5 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_43 535460 : 536201 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_44 551898 : 555146 3 Ostreococcus_tauri_virus(50.0%) NA NA
DBSCAN-SWA_45 567598 : 569116 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_46 574541 : 575120 1 Caulobacter_phage(100.0%) NA NA
DBSCAN-SWA_47 581073 : 582544 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_48 585735 : 586287 1 Pandoravirus(100.0%) tRNA NA
DBSCAN-SWA_49 589997 : 591515 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_50 604311 : 608417 3 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_51 624987 : 634339 9 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_52 664872 : 670120 6 Synechococcus_phage(66.67%) NA NA
DBSCAN-SWA_53 674279 : 681342 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_54 684468 : 701250 12 Chrysochromulina_ericina_virus(20.0%) NA NA
DBSCAN-SWA_55 707861 : 755896 64 Mannheimia_phage(44.19%) terminase,head,integrase,tail,coat attL 707770:707823|attR 756603:756656
DBSCAN-SWA_56 763451 : 771893 6 Bodo_saltans_virus(25.0%) NA NA
DBSCAN-SWA_57 778087 : 786422 7 Skunkpox_virus(33.33%) NA NA
DBSCAN-SWA_58 791689 : 800919 10 Lactococcus_phage(33.33%) NA NA
DBSCAN-SWA_59 812903 : 815946 3 Erwinia_phage(50.0%) NA NA
DBSCAN-SWA_60 821864 : 824663 1 Bandra_megavirus(100.0%) tRNA NA
DBSCAN-SWA_61 844285 : 853475 7 Cyanophage(25.0%) NA NA
DBSCAN-SWA_62 867123 : 868029 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_63 874148 : 876731 1 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_64 881335 : 885173 5 Mannheimia_phage(50.0%) integrase attL 879255:879269|attR 887844:887858
DBSCAN-SWA_65 889821 : 890571 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_66 896780 : 899606 4 Brazilian_cedratvirus(50.0%) NA NA
DBSCAN-SWA_67 902808 : 903336 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_68 913481 : 914117 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_69 919067 : 920918 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_70 929479 : 933009 5 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_71 936519 : 944671 11 Xanthomonas_phage(20.0%) NA NA
DBSCAN-SWA_72 952456 : 957108 3 Leptospira_phage(50.0%) NA NA
DBSCAN-SWA_73 963864 : 1067227 106 Mannheimia_phage(32.0%) portal,terminase,transposase,integrase,protease,tail,tRNA attL 965426:965471|attR 1007156:1007201
DBSCAN-SWA_74 1072523 : 1074539 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_75 1086365 : 1087484 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_76 1097468 : 1101338 3 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_77 1107892 : 1118292 11 Enterobacteria_phage(16.67%) protease NA
DBSCAN-SWA_78 1123213 : 1126346 2 Moumouvirus(50.0%) NA NA
DBSCAN-SWA_79 1129881 : 1133183 3 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_80 1136817 : 1138092 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_81 1145445 : 1153707 6 Roseobacter_phage(25.0%) NA NA
DBSCAN-SWA_82 1166870 : 1173596 8 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_83 1190663 : 1339674 150 Mannheimia_phage(24.68%) portal,capsid,terminase,head,plate,transposase,integrase,tail,tRNA attL 1261258:1261275|attR 1315279:1315296
DBSCAN-SWA_84 1364276 : 1367280 3 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_85 1378936 : 1393490 12 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_86 1404764 : 1405442 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_87 1425337 : 1428315 4 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_88 1435676 : 1446412 8 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_89 1452126 : 1453797 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_90 1460500 : 1469264 8 Bacillus_phage(60.0%) protease NA
DBSCAN-SWA_91 1474129 : 1476046 4 Nitrincola_phage(50.0%) NA NA
DBSCAN-SWA_92 1483638 : 1487659 4 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_93 1507345 : 1508284 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_94 1514741 : 1518212 6 Vibrio_phage(50.0%) tRNA NA
DBSCAN-SWA_95 1534104 : 1540359 6 Moumouvirus(33.33%) NA NA
DBSCAN-SWA_96 1544470 : 1546444 1 Virus_Rctr197k(100.0%) NA NA
DBSCAN-SWA_97 1549523 : 1551549 3 Pseudomonas_phage(33.33%) protease NA
DBSCAN-SWA_98 1554746 : 1559190 4 Escherichia_phage(50.0%) tRNA NA
DBSCAN-SWA_99 1562536 : 1565023 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_100 1580564 : 1587016 3 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_101 1590167 : 1602837 13 Tupanvirus(16.67%) tRNA NA
DBSCAN-SWA_102 1611250 : 1615783 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_103 1622972 : 1629945 6 Acinetobacter_phage(75.0%) protease NA
DBSCAN-SWA_104 1642214 : 1644146 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_105 1647168 : 1655877 10 Tetraselmis_virus(33.33%) tRNA NA
DBSCAN-SWA_106 1672059 : 1675340 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_107 1680511 : 1688354 9 Streptococcus_phage(20.0%) tRNA NA
DBSCAN-SWA_108 1696155 : 1700868 3 Indivirus(50.0%) tRNA NA
DBSCAN-SWA_109 1704317 : 1704932 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_110 1709761 : 1709971 1 Morganella_phage(100.0%) NA NA
DBSCAN-SWA_111 1722301 : 1727227 3 Skua_adenovirus(50.0%) NA NA
DBSCAN-SWA_112 1731221 : 1733105 1 Salinibacter_virus(100.0%) NA NA
DBSCAN-SWA_113 1737437 : 1738097 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_114 1752678 : 1760915 7 Chrysochromulina_ericina_virus(25.0%) NA NA
DBSCAN-SWA_115 1766997 : 1772036 4 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_116 1785394 : 1791289 4 Pseudomonas_phage(66.67%) NA NA
DBSCAN-SWA_117 1802250 : 1817615 12 Staphylococcus_phage(20.0%) NA NA
DBSCAN-SWA_118 1823343 : 1826115 3 Salmonella_phage(33.33%) NA NA
DBSCAN-SWA_119 1839406 : 1845177 4 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_120 1852094 : 1856006 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_121 1865440 : 1868039 2 Only_Syngen_Nebraska_virus(50.0%) NA NA
DBSCAN-SWA_122 1871177 : 1871837 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_123 1892908 : 1893193 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_124 1911172 : 1921417 6 Dickeya_phage(20.0%) tRNA NA
DBSCAN-SWA_125 1927749 : 1928013 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_126 1937618 : 1938701 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_127 1942199 : 1944881 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_128 1963013 : 1969536 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_129 1973695 : 1975420 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_130 1982962 : 2063049 88 Haemophilus_phage(37.5%) terminase,head,plate,transposase,integrase,lysis,tail,tRNA attL 2027633:2027650|attR 2063368:2063385
DBSCAN-SWA_131 2072406 : 2073870 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_132 2083048 : 2085640 2 Moraxella_phage(50.0%) NA NA
DBSCAN-SWA_133 2099375 : 2104406 4 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_134 2110843 : 2111986 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_135 2117147 : 2123461 3 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_136 2127807 : 2139113 11 Tupanvirus(28.57%) NA NA
DBSCAN-SWA_137 2146549 : 2147920 1 Phage_TP(100.0%) tRNA NA
DBSCAN-SWA_138 2153355 : 2159366 5 uncultured_Mediterranean_phage(75.0%) tRNA NA
DBSCAN-SWA_139 2162410 : 2164012 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_140 2169175 : 2172035 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_141 2176593 : 2178546 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_142 2190951 : 2203051 12 Mycoplasma_phage(14.29%) tRNA NA
DBSCAN-SWA_143 2210932 : 2216522 7 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_144 2223100 : 2223940 1 Haemophilus_phage(100.0%) NA NA
DBSCAN-SWA_145 2227050 : 2243038 15 Mannheimia_phage(61.54%) plate,tail,head NA
DBSCAN-SWA_146 2246415 : 2260007 25 Haemophilus_phage(46.67%) NA NA
DBSCAN-SWA_147 2263602 : 2265099 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_148 2293771 : 2303252 12 uncultured_Caudovirales_phage(20.0%) protease NA
DBSCAN-SWA_149 2319940 : 2321235 2 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_150 2331090 : 2334973 4 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_151 2342444 : 2352833 9 Agrobacterium_phage(25.0%) tRNA NA
DBSCAN-SWA_152 2355928 : 2365639 10 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_153 2400109 : 2401147 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_154 2409213 : 2410908 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_155 2418829 : 2423933 2 Saccharomonospora_phage(50.0%) NA NA
DBSCAN-SWA_156 2435070 : 2436749 2 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_157 2447343 : 2447985 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_158 2456561 : 2457764 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_159 2461098 : 2461743 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_160 2477116 : 2477710 1 Emiliania_huxleyi_virus(100.0%) NA NA
DBSCAN-SWA_161 2486694 : 2489265 3 Flavobacterium_phage(50.0%) transposase NA
DBSCAN-SWA_162 2494005 : 2496738 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_163 2501348 : 2508838 6 Moraxella_phage(20.0%) protease NA
DBSCAN-SWA_164 2512818 : 2516082 3 Acanthocystis_turfacea_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_165 2522221 : 2530237 5 Organic_Lake_phycodnavirus(25.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage