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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015571 Pasteurella multocida strain USDA-ARS-USMARC-60214 chromosome, complete genome 2 crisprs csa3,DEDDh,cas3,cas8f,cas5f,cas7f,cas6f,cas1,cas3-cas2,DinG 0 8 149 0

Results visualization

1. NZ_CP015571
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015571_1 153080-153408 Unclear I-F
5 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015571_2 1325806-1326074 TypeI-F NA
4 spacers
cas6f,cas7f,cas5f,cas8f,cas1,cas3-cas2

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015571_1 1.1|153108|33|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153108-153140 33 NC_008193 Pasteurella phage F108, complete genome 16631-16663 0 1.0
NZ_CP015571_1 1.1|153108|33|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153108-153140 33 DQ114220 Bacteriophage F108, complete genome 16631-16663 0 1.0
NZ_CP015571_1 1.5|153349|32|NZ_CP015571|CRISPRCasFinder,CRT 153349-153380 32 MH238467 Pasteurella phage Pm86, complete genome 42601-42632 1 0.969
NZ_CP015571_1 1.3|153229|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153229-153260 32 NC_008193 Pasteurella phage F108, complete genome 11445-11476 2 0.938
NZ_CP015571_1 1.3|153229|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153229-153260 32 DQ114220 Bacteriophage F108, complete genome 11445-11476 2 0.938
NZ_CP015571_2 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325834-1325865 32 NC_003315 Haemophilus phage HP2, complete genome 26899-26930 2 0.938
NZ_CP015571_2 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325834-1325865 32 AY027935 Haemophilus influenzae phage HP2, complete genome 26899-26930 2 0.938
NZ_CP015571_2 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325834-1325865 32 U24159 Bacteriophage HP1 strain HP1c1, complete genome 27719-27750 3 0.906
NZ_CP015571_2 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325834-1325865 32 NC_001697 Haemophilus phage HP1, complete genome 27719-27750 3 0.906
NZ_CP015571_2 2.4|1326015|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1326015-1326046 32 NZ_CP017756 Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence 73488-73519 5 0.844
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_KX086582 Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence 25794-25825 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_KF831355 Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence 23170-23201 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_AP018563 Staphylococcus argenteus strain 58113 plasmid p1, complete sequence 18411-18442 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NC_013327 Staphylococcus aureus plasmid pWBG749, complete sequence 26168-26199 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 CP030569 Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence 12940-12971 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 CP030458 Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence 15652-15683 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_AP017923 Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence 17835-17866 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NC_013325 Staphylococcus aureus plasmid pWBG745, complete sequence 13088-13119 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 CP030696 Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence 28191-28222 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 CP030710 Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence 7547-7578 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_CP012757 Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence 37721-37752 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_CP042004 Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence 11471-11502 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_CP047857 Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence 26882-26913 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_CP012594 Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence 9160-9191 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_MH587575 Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence 17922-17953 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 NZ_MH587574 Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence 17842-17873 6 0.812
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 CP030603 Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence 34556-34587 6 0.812
NZ_CP015571_2 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325834-1325865 32 MN693155 Marine virus AFVG_25M94, complete genome 42117-42148 7 0.781
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 MK905543 Vibrio phage USC-1, complete genome 55483-55514 8 0.75
NZ_CP015571_1 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 153289-153320 32 MK358448 Vibrio phage 5, complete genome 209261-209292 8 0.75
NZ_CP015571_2 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325955-1325986 32 MN694758 Marine virus AFVG_250M853, complete genome 27038-27069 8 0.75
NZ_CP015571_2 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325955-1325986 32 MN694774 Marine virus AFVG_250M941, complete genome 26488-26519 8 0.75
NZ_CP015571_2 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325955-1325986 32 MN694077 Marine virus AFVG_250M852, complete genome 27041-27072 8 0.75
NZ_CP015571_2 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325955-1325986 32 MN693487 Marine virus AFVG_25M100, complete genome 6473-6504 8 0.75
NZ_CP015571_2 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325955-1325986 32 MN694586 Marine virus AFVG_250M370, complete genome 8206-8237 8 0.75
NZ_CP015571_2 2.2|1325894|33|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325894-1325926 33 NC_048656 Klebsiella phage vB_KpnM_BIS47, complete genome 11367-11399 9 0.727
NZ_CP015571_2 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325955-1325986 32 NZ_CP026928 Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence 5680-5711 10 0.688
NZ_CP015571_2 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1325955-1325986 32 GU943040 Uncultured phage MedDCM-OCT-S09-C28 genomic sequence 16896-16927 10 0.688
NZ_CP015571_2 2.4|1326015|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT 1326015-1326046 32 NZ_CP025547 Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence 284092-284123 10 0.688

1. spacer 1.1|153108|33|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 0, identity: 1.0

gcagaccgagcgcacgcgagattgtcgcgacgc	CRISPR spacer
gcagaccgagcgcacgcgagattgtcgcgacgc	Protospacer
*********************************

2. spacer 1.1|153108|33|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 0, identity: 1.0

gcagaccgagcgcacgcgagattgtcgcgacgc	CRISPR spacer
gcagaccgagcgcacgcgagattgtcgcgacgc	Protospacer
*********************************

3. spacer 1.5|153349|32|NZ_CP015571|CRISPRCasFinder,CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.969

taaagcgatcttggctcgattatcagattggt	CRISPR spacer
taaagcgattttggctcgattatcagattggt	Protospacer
*********.**********************

4. spacer 1.3|153229|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 2, identity: 0.938

gattattttaagcaacggagcggaattacact	CRISPR spacer
gattattttaagcaatggcgcggaattacact	Protospacer
***************.** *************

5. spacer 1.3|153229|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 2, identity: 0.938

gattattttaagcaacggagcggaattacact	CRISPR spacer
gattattttaagcaatggcgcggaattacact	Protospacer
***************.** *************

6. spacer 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NC_003315 (Haemophilus phage HP2, complete genome) position: , mismatch: 2, identity: 0.938

attagctgaagaccgatttattagaaatacag	CRISPR spacer
attagctgaagaccgatttattagaaatgcat	Protospacer
****************************.** 

7. spacer 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to AY027935 (Haemophilus influenzae phage HP2, complete genome) position: , mismatch: 2, identity: 0.938

attagctgaagaccgatttattagaaatacag	CRISPR spacer
attagctgaagaccgatttattagaaatgcat	Protospacer
****************************.** 

8. spacer 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to U24159 (Bacteriophage HP1 strain HP1c1, complete genome) position: , mismatch: 3, identity: 0.906

attagctgaagaccgatttattagaaatacag	CRISPR spacer
acttgcggaagaccgatttattagaaatacag	Protospacer
*.* ** *************************

9. spacer 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NC_001697 (Haemophilus phage HP1, complete genome) position: , mismatch: 3, identity: 0.906

attagctgaagaccgatttattagaaatacag	CRISPR spacer
acttgcggaagaccgatttattagaaatacag	Protospacer
*.* ** *************************

10. spacer 2.4|1326015|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017756 (Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

attcgatttccagtgccgaaaat-ccatgccct	CRISPR spacer
attcgatttctggtgccgaaaatggcttgccc-	Protospacer
**********..***********  * ***** 

11. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX086582 (Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

12. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KF831355 (Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

13. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018563 (Staphylococcus argenteus strain 58113 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

14. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NC_013327 (Staphylococcus aureus plasmid pWBG749, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

15. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to CP030569 (Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

16. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to CP030458 (Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

17. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017923 (Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

18. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NC_013325 (Staphylococcus aureus plasmid pWBG745, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

19. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to CP030696 (Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

20. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to CP030710 (Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

21. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012757 (Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

22. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042004 (Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

23. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047857 (Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

24. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012594 (Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

25. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH587575 (Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

26. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

27. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to CP030603 (Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcttccaattcttctgttttctgctctt-	CRISPR spacer
gtcatattcaaattcttctg-tttctaccgtta	Protospacer
***** *** ********** *****.*. ** 

28. spacer 2.1|1325834|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to MN693155 (Marine virus AFVG_25M94, complete genome) position: , mismatch: 7, identity: 0.781

attagctg-aagaccgatttattagaaatacag	CRISPR spacer
-tacgttgttagaccaatttataagaaatacag	Protospacer
 *  *.**  *****.****** **********

29. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 8, identity: 0.75

gtcatcttccaattcttctgttttctgctctt	CRISPR spacer
atcgtcttccaattcttctgtttcctcagact	Protospacer
.**.*******************.**    .*

30. spacer 1.4|153289|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 8, identity: 0.75

gtcatcttccaattcttctgttttctgctctt	CRISPR spacer
atcgtcttccaattcttctgtttcctcagact	Protospacer
.**.*******************.**    .*

31. spacer 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

32. spacer 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to MN694774 (Marine virus AFVG_250M941, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

33. spacer 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

34. spacer 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to MN693487 (Marine virus AFVG_25M100, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

35. spacer 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to MN694586 (Marine virus AFVG_250M370, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

36. spacer 2.2|1325894|33|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 9, identity: 0.727

gtcgttgaaacggcaccatgggcgtttgcattt	CRISPR spacer
ctgatggaaacgtcaccattggcgtttgcagcg	Protospacer
 * .* ****** ****** ********** . 

37. spacer 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
tcgcggcaagaagatttaaccgtcatcgaaat	Protospacer
  .  .* ************ *****.**** 

38. spacer 2.3|1325955|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to GU943040 (Uncultured phage MedDCM-OCT-S09-C28 genomic sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
gaaacactagaacttttaacggttcaggcggt	Protospacer
************  *********.   * .. 

39. spacer 2.4|1326015|32|NZ_CP015571|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

attcgatttccagtgccgaaaatccatgccct	CRISPR spacer
gctgctgttccagccccgaaaatccatgccga	Protospacer
..*    ******. ***************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 4221 4 Vibrio_phage(33.33%) transposase NA
DBSCAN-SWA_2 13016 : 14531 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_3 35154 : 38909 4 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_4 46275 : 50540 3 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_5 53917 : 61987 7 Escherichia_phage(60.0%) NA NA
DBSCAN-SWA_6 65186 : 69142 4 Escherichia_phage(100.0%) integrase attL 58163:58177|attR 69521:69535
DBSCAN-SWA_7 72517 : 79045 4 Lactobacillus_prophage(50.0%) NA NA
DBSCAN-SWA_8 84869 : 86876 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_9 100325 : 101702 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_10 117595 : 118660 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 129397 : 130105 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_12 137203 : 139786 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_13 146847 : 152932 4 uncultured_Mediterranean_phage(66.67%) tRNA NA
DBSCAN-SWA_14 158757 : 163356 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_15 171127 : 171388 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_16 178592 : 185878 7 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_17 194135 : 213011 20 Vibrio_phage(20.0%) NA NA
DBSCAN-SWA_18 216064 : 218043 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_19 225777 : 226997 2 Trichoplusia_ni_ascovirus(50.0%) NA NA
DBSCAN-SWA_20 231101 : 232373 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_21 236320 : 238419 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_22 243778 : 290364 64 Mannheimia_phage(43.18%) tail,integrase,transposase,terminase,holin attL 242983:243033|attR 288121:288171
DBSCAN-SWA_23 295483 : 296641 1 Halovirus(100.0%) NA NA
DBSCAN-SWA_24 305772 : 314007 9 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_25 318854 : 320471 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_26 336638 : 337289 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_27 353111 : 359843 6 Bacillus_virus(50.0%) transposase NA
DBSCAN-SWA_28 367009 : 367576 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_29 376065 : 382949 3 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_30 399170 : 400096 2 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_31 408186 : 409715 2 Synechococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_32 415984 : 416449 1 Clostridium_phage(100.0%) transposase NA
DBSCAN-SWA_33 426583 : 428612 2 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_34 437358 : 438858 1 Klebsiella_phage(100.0%) NA NA
DBSCAN-SWA_35 447017 : 448832 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_36 459496 : 460867 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_37 475866 : 478480 3 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_38 488484 : 488949 1 Clostridium_phage(100.0%) transposase NA
DBSCAN-SWA_39 496804 : 497797 1 Heterosigma_akashiwo_virus(100.0%) NA NA
DBSCAN-SWA_40 505760 : 509320 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_41 523930 : 525052 1 Thermus_phage(100.0%) NA NA
DBSCAN-SWA_42 528278 : 532793 5 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_43 536055 : 536796 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_44 552493 : 555741 3 Ostreococcus_tauri_virus(50.0%) NA NA
DBSCAN-SWA_45 568193 : 569711 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_46 575136 : 575715 1 Caulobacter_phage(100.0%) NA NA
DBSCAN-SWA_47 581668 : 583139 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_48 586330 : 586882 1 Pandoravirus(100.0%) tRNA NA
DBSCAN-SWA_49 590592 : 592110 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_50 604906 : 609012 3 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_51 625582 : 634934 9 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_52 665467 : 670715 6 Synechococcus_phage(66.67%) NA NA
DBSCAN-SWA_53 674874 : 681937 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_54 685063 : 701845 12 Chrysochromulina_ericina_virus(20.0%) NA NA
DBSCAN-SWA_55 708456 : 756491 64 Mannheimia_phage(44.19%) tail,head,integrase,terminase,coat attL 708365:708418|attR 757198:757251
DBSCAN-SWA_56 764046 : 772488 6 Bodo_saltans_virus(25.0%) NA NA
DBSCAN-SWA_57 778682 : 787017 7 Skunkpox_virus(33.33%) NA NA
DBSCAN-SWA_58 792284 : 801514 10 Lactococcus_phage(33.33%) NA NA
DBSCAN-SWA_59 813498 : 816541 3 Erwinia_phage(50.0%) NA NA
DBSCAN-SWA_60 822459 : 825258 1 Bandra_megavirus(100.0%) tRNA NA
DBSCAN-SWA_61 844881 : 854072 8 Cyanophage(20.0%) tRNA NA
DBSCAN-SWA_62 867720 : 868626 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_63 874745 : 877328 1 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_64 881932 : 885770 5 Mannheimia_phage(50.0%) integrase attL 879852:879866|attR 888441:888455
DBSCAN-SWA_65 890418 : 891168 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_66 897377 : 900203 4 Brazilian_cedratvirus(50.0%) NA NA
DBSCAN-SWA_67 903405 : 903933 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_68 914078 : 914714 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_69 919664 : 921515 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_70 930076 : 933606 5 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_71 937116 : 945268 11 Xanthomonas_phage(20.0%) NA NA
DBSCAN-SWA_72 953053 : 957705 3 Leptospira_phage(50.0%) NA NA
DBSCAN-SWA_73 964461 : 1067824 106 Mannheimia_phage(32.0%) tail,portal,tRNA,protease,integrase,terminase,transposase attL 966023:966068|attR 1007753:1007798
DBSCAN-SWA_74 1073120 : 1075136 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_75 1086962 : 1088081 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_76 1098065 : 1101935 3 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_77 1108489 : 1118889 11 Enterobacteria_phage(16.67%) protease NA
DBSCAN-SWA_78 1123810 : 1126943 2 Moumouvirus(50.0%) NA NA
DBSCAN-SWA_79 1130478 : 1133780 3 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_80 1137414 : 1138689 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_81 1146042 : 1154304 6 Roseobacter_phage(25.0%) NA NA
DBSCAN-SWA_82 1167467 : 1174193 8 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_83 1191260 : 1340271 150 Mannheimia_phage(24.68%) tail,portal,tRNA,head,integrase,transposase,plate,terminase,capsid attL 1261856:1261873|attR 1315876:1315893
DBSCAN-SWA_84 1364873 : 1367877 3 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_85 1379533 : 1394087 12 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_86 1405361 : 1406039 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_87 1425934 : 1428912 4 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_88 1436273 : 1447009 8 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_89 1452723 : 1454394 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_90 1461097 : 1469861 8 Bacillus_phage(60.0%) protease NA
DBSCAN-SWA_91 1474726 : 1476643 4 Nitrincola_phage(50.0%) NA NA
DBSCAN-SWA_92 1484235 : 1488256 4 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_93 1507942 : 1508881 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_94 1515338 : 1518809 6 Vibrio_phage(50.0%) tRNA NA
DBSCAN-SWA_95 1534701 : 1540956 6 Moumouvirus(33.33%) NA NA
DBSCAN-SWA_96 1545067 : 1547041 1 Virus_Rctr197k(100.0%) NA NA
DBSCAN-SWA_97 1550120 : 1552146 3 Pseudomonas_phage(33.33%) protease NA
DBSCAN-SWA_98 1555343 : 1559787 4 Escherichia_phage(50.0%) tRNA NA
DBSCAN-SWA_99 1563133 : 1565620 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_100 1581161 : 1587613 3 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_101 1590764 : 1603434 13 Tupanvirus(16.67%) tRNA NA
DBSCAN-SWA_102 1611847 : 1616380 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_103 1623569 : 1630542 6 Acinetobacter_phage(75.0%) protease NA
DBSCAN-SWA_104 1642811 : 1644743 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_105 1647765 : 1656474 10 Tetraselmis_virus(33.33%) tRNA NA
DBSCAN-SWA_106 1667798 : 1675938 5 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_107 1681109 : 1688952 9 Streptococcus_phage(20.0%) tRNA NA
DBSCAN-SWA_108 1696753 : 1701466 3 Indivirus(50.0%) tRNA NA
DBSCAN-SWA_109 1704915 : 1705530 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_110 1710359 : 1710569 1 Morganella_phage(100.0%) NA NA
DBSCAN-SWA_111 1722899 : 1727825 3 Skua_adenovirus(50.0%) NA NA
DBSCAN-SWA_112 1731819 : 1733703 1 Salinibacter_virus(100.0%) NA NA
DBSCAN-SWA_113 1738035 : 1738695 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_114 1753276 : 1761513 7 Chrysochromulina_ericina_virus(25.0%) NA NA
DBSCAN-SWA_115 1767595 : 1772634 4 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_116 1785992 : 1791888 5 Pseudomonas_phage(66.67%) NA NA
DBSCAN-SWA_117 1802849 : 1818214 12 Staphylococcus_phage(20.0%) NA NA
DBSCAN-SWA_118 1823942 : 1826714 3 Salmonella_phage(33.33%) NA NA
DBSCAN-SWA_119 1840005 : 1845776 4 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_120 1852693 : 1856605 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_121 1866039 : 1868638 2 Only_Syngen_Nebraska_virus(50.0%) NA NA
DBSCAN-SWA_122 1871777 : 1872437 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_123 1893508 : 1893793 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_124 1911772 : 1922017 6 Dickeya_phage(20.0%) tRNA NA
DBSCAN-SWA_125 1928349 : 1928613 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_126 1938218 : 1939301 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_127 1942799 : 1945481 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_128 1963613 : 1970136 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_129 1974295 : 1976020 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_130 1983563 : 2063712 87 Haemophilus_phage(38.3%) tail,tRNA,head,lysis,plate,terminase NA
DBSCAN-SWA_131 2067307 : 2068804 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_132 2097476 : 2106957 12 uncultured_Caudovirales_phage(20.0%) protease NA
DBSCAN-SWA_133 2123645 : 2124940 2 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_134 2134795 : 2138678 4 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_135 2146149 : 2156538 9 Agrobacterium_phage(25.0%) tRNA NA
DBSCAN-SWA_136 2159633 : 2169344 10 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_137 2203814 : 2204852 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_138 2212918 : 2214613 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_139 2222534 : 2227638 2 Saccharomonospora_phage(50.0%) NA NA
DBSCAN-SWA_140 2238775 : 2240454 2 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_141 2251048 : 2251690 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_142 2260266 : 2261469 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_143 2264803 : 2265448 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_144 2278935 : 2281416 2 Oenococcus_phage(50.0%) NA NA
DBSCAN-SWA_145 2290400 : 2292971 3 Flavobacterium_phage(50.0%) transposase NA
DBSCAN-SWA_146 2297711 : 2300444 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_147 2305054 : 2312544 6 Moraxella_phage(20.0%) protease NA
DBSCAN-SWA_148 2316524 : 2319788 3 Acanthocystis_turfacea_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_149 2325927 : 2331041 4 Organic_Lake_phycodnavirus(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage