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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017923 Bordetella pertussis strain J148 chromosome, complete genome 5 crisprs csa3,DEDDh,cas3,DinG 0 0 29 0

Results visualization

1. NZ_CP017923
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017923_1 664127-664236 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017923_2 1874160-1874287 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017923_3 2941805-2941921 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017923_4 3657633-3657726 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017923_5 3839085-3839169 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 61595 56 Natrialba_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_2 255277 : 326265 53 uncultured_Mediterranean_phage(15.38%) transposase NA
DBSCAN-SWA_3 508629 : 626524 101 Acinetobacter_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_4 630938 : 695820 52 Pandoravirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_5 714731 : 792040 59 Bacillus_phage(20.0%) tRNA,transposase,protease,integrase attL 761868:761886|attR 781756:781774
DBSCAN-SWA_6 911307 : 975141 58 Pseudomonas_phage(30.0%) tRNA,transposase,protease NA
DBSCAN-SWA_7 1048427 : 1141415 88 Bacillus_virus(27.27%) transposase NA
DBSCAN-SWA_8 1171801 : 1242770 53 uncultured_Mediterranean_phage(25.0%) protease,transposase NA
DBSCAN-SWA_9 1258965 : 1315672 43 Agrobacterium_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_10 1344039 : 1401249 53 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_11 1491482 : 1553531 56 Salmonella_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_12 1673678 : 1737256 50 Klebsiella_phage(11.11%) protease,transposase NA
DBSCAN-SWA_13 1776369 : 1824384 44 Moraxella_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_14 1885946 : 1945215 52 Klosneuvirus(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_15 1955455 : 1999778 46 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_16 2029551 : 2093920 52 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_17 2280385 : 2341733 52 Yellowstone_lake_phycodnavirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_18 2362524 : 2433677 55 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_19 2530554 : 2589335 50 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_20 2641872 : 2708372 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_21 2890775 : 3042422 120 uncultured_Mediterranean_phage(15.79%) tRNA,transposase,holin NA
DBSCAN-SWA_22 3050632 : 3112793 46 Erysipelothrix_phage(20.0%) transposase NA
DBSCAN-SWA_23 3132215 : 3187345 51 Bacillus_phage(28.57%) transposase NA
DBSCAN-SWA_24 3268405 : 3337408 57 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_25 3352854 : 3452967 111 uncultured_Caudovirales_phage(13.79%) transposase,protease,tRNA,terminase,tail NA
DBSCAN-SWA_26 3613637 : 3668611 45 Lake_Baikal_phage(20.0%) transposase NA
DBSCAN-SWA_27 3758424 : 3874094 105 Bacillus_phage(12.5%) protease,transposase,tRNA NA
DBSCAN-SWA_28 3914507 : 3982333 60 Bacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_29 4010156 : 4078178 59 uncultured_Mediterranean_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage