Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024616 Escherichia coli strain SMN152SH1 plasmid pO177B1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP024617 Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP024615 Escherichia coli strain SMN152SH1 plasmid pO177C1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP024618 Escherichia coli strain SMN152SH1 chromosome, complete genome 5 crisprs DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas7,cas8e 0 3 19 0

Results visualization

1. NZ_CP024618
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024618_1 562443-562558 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024618_2 1623895-1623986 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024618_3 3892101-3892251 TypeI-E I-E
2 spacers
cas2,cas6e,cas7,cas8e,cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024618_4 3919701-3919789 Orphan I-E
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024618_5 4263111-4263231 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024618_1 1.1|562474|54|NZ_CP024618|CRISPRCasFinder 562474-562527 54 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 165411-165464 1 0.981
NZ_CP024618_2 2.1|1623921|40|NZ_CP024618|CRISPRCasFinder 1623921-1623960 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP024618_3 3.2|3892194|29|NZ_CP024618|PILER-CR 3892194-3892222 29 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 19327-19355 6 0.793
NZ_CP024618_3 3.2|3892194|29|NZ_CP024618|PILER-CR 3892194-3892222 29 MK448454 Streptococcus satellite phage Javan361, complete genome 9192-9220 7 0.759
NZ_CP024618_1 1.1|562474|54|NZ_CP024618|CRISPRCasFinder 562474-562527 54 NZ_CP048385 Citrobacter freundii strain 62 plasmid p6_C, complete sequence 72431-72484 12 0.778

1. spacer 1.1|562474|54|NZ_CP024618|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

gaatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	CRISPR spacer
caatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	Protospacer
 *****************************************************

2. spacer 2.1|1623921|40|NZ_CP024618|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

acagcacagcggggggaatttcaagaatgacccgcagcgc	CRISPR spacer
acagcacagcgggggtaatttcaagaatgacccgcagcgc	Protospacer
*************** ************************

3. spacer 3.2|3892194|29|NZ_CP024618|PILER-CR matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 6, identity: 0.793

tgaagcatcaaacatttggtg--gaccaaac	CRISPR spacer
tgaagcaccaaacatttggtgtcgggtaa--	Protospacer
*******.*************  *. .**  

4. spacer 3.2|3892194|29|NZ_CP024618|PILER-CR matches to MK448454 (Streptococcus satellite phage Javan361, complete genome) position: , mismatch: 7, identity: 0.759

tgaagcatcaaacatttggtggaccaaac	CRISPR spacer
tgaagaatcaaaaatttggtggattgata	Protospacer
***** ****** **********...*  

5. spacer 1.1|562474|54|NZ_CP024618|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

gaatgccggatgcgctttgcttatccggcctacaaaatcgc-----agcgtgtaggcca	CRISPR spacer
tactgccggatgcgctttgcttatccggcctacaataccgcgaattaatttgta-----	Protospacer
 * ******************************** *.***     *.. ****     

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 43627 39 Stx2-converting_phage(36.67%) holin,tail,transposase,terminase NA
DBSCAN-SWA_2 165338 : 224749 51 Vibrio_phage(15.38%) tRNA,protease,transposase NA
DBSCAN-SWA_3 274409 : 381784 93 Stx2-converting_phage(26.32%) plate,protease,tRNA,integrase,transposase,tail attL 309030:309089|attR 381783:382549
DBSCAN-SWA_4 405706 : 445057 52 Escherichia_phage(50.0%) terminase,integrase,capsid,holin,transposase,lysis attL 405494:405509|attR 439510:439525
DBSCAN-SWA_5 457630 : 466167 7 Enterobacteria_phage(33.33%) tail NA
DBSCAN-SWA_6 676218 : 753424 58 uncultured_Mediterranean_phage(12.5%) tRNA,protease,transposase,plate NA
DBSCAN-SWA_7 1231764 : 1247159 23 Enterobacteria_phage(41.18%) integrase,transposase,holin,tail attL 1231677:1231691|attR 1245230:1245244
DBSCAN-SWA_8 1361377 : 1397163 31 Stx2-converting_phage(30.0%) protease,transposase NA
DBSCAN-SWA_9 1545229 : 1585374 49 Escherichia_phage(33.33%) protease,terminase,integrase,holin,transposase attL 1553717:1553732|attR 1571213:1571228
DBSCAN-SWA_10 1731072 : 1864707 152 Stx2-converting_phage(26.89%) terminase,tRNA,head,tail,integrase,capsid,holin,transposase,lysis attL 1794753:1794768|attR 1859882:1859897
DBSCAN-SWA_11 2066474 : 2222582 145 Escherichia_phage(35.48%) protease,terminase,tRNA,head,integrase,capsid,portal,holin,transposase,tail attL 2071812:2071837|attR 2117161:2117186
DBSCAN-SWA_12 2313690 : 2411428 104 Enterobacteria_phage(30.65%) terminase,integrase,holin,transposase,tail attL 2313677:2313736|attR 2411384:2412149
DBSCAN-SWA_13 2709764 : 2814265 108 Enterobacteria_phage(69.39%) plate,terminase,tRNA,head,integrase,capsid,portal,holin,transposase,tail attL 2751986:2752045|attR 2789327:2789447
DBSCAN-SWA_14 2839224 : 2928238 102 Escherichia_phage(42.86%) plate,protease,head,integrase,holin,transposase,tail attL 2830516:2830532|attR 2913309:2913325
DBSCAN-SWA_15 3005706 : 3016539 16 Escherichia_phage(36.36%) terminase,tail NA
DBSCAN-SWA_16 3019681 : 3139144 114 Enterobacteria_phage(38.16%) protease,terminase,tRNA,lysis,head,integrase,capsid,holin,transposase,tail attL 3016310:3016325|attR 3138658:3138673
DBSCAN-SWA_17 3342357 : 3474849 147 Escherichia_phage(41.53%) bacteriocin,plate,protease,tRNA,integrase,capsid,portal,holin,transposase,tail attL 3410009:3410025|attR 3457407:3457423
DBSCAN-SWA_18 3695666 : 3782630 95 Salmonella_phage(60.0%) plate,terminase,tRNA,head,tail,integrase,capsid,portal,lysis attL 3739356:3739400|attR 3774390:3774434
DBSCAN-SWA_19 5294529 : 5302459 13 Enterobacteria_phage(46.15%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP024617
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 227 : 68535 44 Stx2-converting_phage(22.22%) integrase,transposase,protease,tRNA,tail attL 1773:1792|attR 68562:68581
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage