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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP023673 Escherichia coli strain SMN013SH2 chromosome, complete genome 7 crisprs csa3,cas3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol 0 4 19 0
NZ_CP023675 Escherichia coli strain SMN013SH2 plasmid pO177B2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP023674 Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP023673
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023673_1 640861-640981 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023673_2 985270-985358 Orphan I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023673_3 1011497-1011650 TypeI-E I-E
2 spacers
cas2,cas6e,cas5,cas7,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023673_4 2315314-2315437 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023673_5 3048864-3048955 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023673_6 3458847-3458991 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023673_7 4197977-4198092 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP023673_5 5.1|3048890|40|NZ_CP023673|CRISPRCasFinder 3048890-3048929 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP023673_7 7.1|4198008|54|NZ_CP023673|CRISPRCasFinder 4198008-4198061 54 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 165411-165464 1 0.981
NZ_CP023673_4 4.1|2315357|38|NZ_CP023673|CRISPRCasFinder 2315357-2315394 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP023673_3 3.1|1011529|29|NZ_CP023673|PILER-CR 1011529-1011557 29 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 19327-19355 6 0.793
NZ_CP023673_3 3.1|1011529|29|NZ_CP023673|PILER-CR 1011529-1011557 29 MK448454 Streptococcus satellite phage Javan361, complete genome 9192-9220 7 0.759
NZ_CP023673_7 7.1|4198008|54|NZ_CP023673|CRISPRCasFinder 4198008-4198061 54 NZ_CP048385 Citrobacter freundii strain 62 plasmid p6_C, complete sequence 72431-72484 12 0.778

1. spacer 5.1|3048890|40|NZ_CP023673|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcattcttgaaattccccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
************************ ***************

2. spacer 7.1|4198008|54|NZ_CP023673|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

tggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattc	CRISPR spacer
tggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattg	Protospacer
***************************************************** 

3. spacer 4.1|2315357|38|NZ_CP023673|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 3.1|1011529|29|NZ_CP023673|PILER-CR matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 6, identity: 0.793

gtttggtc--caccaaatgtttgatgcttca	CRISPR spacer
--ttacccgacaccaaatgtttggtgcttca	Protospacer
  **. .*  *************.*******

5. spacer 3.1|1011529|29|NZ_CP023673|PILER-CR matches to MK448454 (Streptococcus satellite phage Javan361, complete genome) position: , mismatch: 7, identity: 0.759

gtttggtccaccaaatgtttgatgcttca	CRISPR spacer
tatcaatccaccaaatttttgattcttca	Protospacer
  *...********** ****** *****

6. spacer 7.1|4198008|54|NZ_CP023673|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

tggcctacacgct-----gcgattttgtaggccggataagcaaagcgcatccggcattc	CRISPR spacer
-----tacaaattaattcgcggtattgtaggccggataagcaaagcgcatccggcagta	Protospacer
     **** ..*     ***.* ******************************** * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1121116 : 1130372 9 Enterobacteria_phage(44.44%) tail NA
DBSCAN-SWA_2 1352279 : 1416513 60 Enterobacteria_phage(32.26%) protease,integrase,tRNA,holin,transposase,tail attL 1391400:1391416|attR 1418523:1418539
DBSCAN-SWA_3 1436598 : 1465255 26 Enterobacteria_phage(93.75%) transposase,plate,tRNA,tail NA
DBSCAN-SWA_4 1662953 : 1761724 101 Enterobacteria_phage(39.19%) protease,lysis,terminase,integrase,capsid,tRNA,head,holin,transposase,tail attL 1679796:1679816|attR 1736218:1736238
DBSCAN-SWA_5 1801539 : 1812371 16 Escherichia_phage(36.36%) terminase,tail NA
DBSCAN-SWA_6 1853623 : 1861225 7 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_7 1888287 : 2019924 165 Escherichia_phage(31.71%) protease,lysis,terminase,integrase,portal,plate,coat,head,holin,transposase,tail attL 1946573:1946589|attR 2029372:2029388
DBSCAN-SWA_8 2419695 : 2422873 6 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_9 2551299 : 2608232 50 Stx2-converting_phage(45.71%) capsid,head,holin,transposase,tail NA
DBSCAN-SWA_10 2831450 : 2941900 130 Enterobacteria_phage(31.17%) protease,lysis,terminase,integrase,capsid,tRNA,head,holin,transposase,tail attL 2835600:2835615|attR 2954530:2954545
DBSCAN-SWA_11 3028697 : 3135648 111 Escherichia_phage(23.81%) protease,terminase,integrase,holin,transposase,tail attL 3085906:3085965|attR 3120503:3120567
DBSCAN-SWA_12 3441968 : 3457363 23 Enterobacteria_phage(41.18%) transposase,integrase,holin,tail attL 3443884:3443898|attR 3457437:3457451
DBSCAN-SWA_13 3905655 : 3943160 41 Stx2-converting_phage(33.33%) transposase,integrase attL 3908932:3908945|attR 3915584:3915597
DBSCAN-SWA_14 4008537 : 4084314 58 uncultured_Caudovirales_phage(12.5%) transposase,protease,plate,tRNA NA
DBSCAN-SWA_15 4265292 : 4306478 40 Enterobacteria_phage(23.53%) tRNA,tail NA
DBSCAN-SWA_16 4309759 : 4354836 60 Escherichia_phage(43.75%) lysis,terminase,integrase,capsid,head,holin,transposase,tail attL 4325920:4325979|attR 4354086:4354852
DBSCAN-SWA_17 4378759 : 4428736 40 Sodalis_phage(12.5%) transposase,protease,integrase,tRNA attL 4414266:4414281|attR 4427799:4427814
DBSCAN-SWA_18 4488807 : 4534258 46 Ralstonia_phage(12.5%) transposase,protease,tRNA NA
DBSCAN-SWA_19 4682133 : 4753157 78 Stx2-converting_phage(30.16%) terminase,integrase,tRNA,plate,holin,transposase,tail attL 4685435:4685452|attR 4712042:4712059
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP023674
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1461 : 57937 48 Stx2-converting_phage(44.44%) integrase,transposase,tRNA,protease attL 829:843|attR 16441:16455
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage