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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014220 Clostridium botulinum strain B515 plasmid pRSJ21_1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP014221 Clostridium botulinum strain B515 plasmid pRSJ21_2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP014218 Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP014219 Clostridium botulinum strain B515 chromosome, complete genome 7 crisprs DEDDh,csa3,DinG,WYL,cas3,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,casR 0 2 7 0

Results visualization

1. NZ_CP014218
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 36001 67 uncultured_Caudovirales_phage(21.74%) plate,capsid,portal,tail,protease,head,terminase NA
DBSCAN-SWA_2 39232 : 42098 6 Clostridium_phage(66.67%) NA NA
DBSCAN-SWA_3 46965 : 56892 18 Clostridium_phage(44.44%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP014219
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014219_1 1036600-1036692 Orphan III-B
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014219_2 1928882-1929099 Unclear NA
3 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014219_3 2330322-2330545 TypeIII III-B
3 spacers
csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014219_5 2331215-2331305 TypeIII III-B
1 spacers
csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014219_4 2330803-2330957 TypeIII III-B
2 spacers
csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014219_6 2345650-2345744 TypeIII III-B
1 spacers
cas10,csm2gr11,csm3gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014219_7 2677389-2677477 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014219_4 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder 2330828-2330867 40 NZ_CP013700 Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence 84481-84520 7 0.825
NZ_CP014219_4 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder 2330828-2330867 40 NZ_CP014152 Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence 9863-9902 7 0.825
NZ_CP014219_4 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder 2330828-2330867 40 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 5033-5072 7 0.825
NZ_CP014219_4 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder 2330828-2330867 40 NZ_CP013710 Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence 28407-28446 7 0.825
NZ_CP014219_4 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder 2330828-2330867 40 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 79769-79808 9 0.775
NZ_CP014219_4 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder 2330828-2330867 40 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 200528-200567 9 0.775
NZ_CP014219_4 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder 2330828-2330867 40 NC_010418 Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence 83390-83429 9 0.775
NZ_CP014219_4 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder 2330828-2330867 40 NC_010418 Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence 205020-205059 10 0.75
NZ_CP014219_2 2.2|1928971|40|NZ_CP014219|CRISPRCasFinder 1928971-1929010 40 NC_018689 Bacillus thuringiensis MC28 plasmid pMC429, complete sequence 417214-417253 11 0.725
NZ_CP014219_4 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder 2330828-2330867 40 NZ_CP013684 Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence 88441-88480 11 0.725

1. spacer 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 7, identity: 0.825

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
gcacaatacaaaaattagatccaggaatgaaataattatg	Protospacer
.  .***************************** ****  

2. spacer 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 7, identity: 0.825

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcataattcaaaaattatatccaggaatgaaattattata	Protospacer
   **** ********* ********************  

3. spacer 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 7, identity: 0.825

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
acgcaatacaaaaattagatccaggaatgaaattaatgtg	Protospacer
*  .******************************* *.  

4. spacer 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 7, identity: 0.825

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcataattcaaaaattatatccaggaatgaaattattata	Protospacer
   **** ********* ********************  

5. spacer 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 9, identity: 0.775

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcgcaatccaaaaattagatccaggaataaaattattgtg	Protospacer
   .*** ********************.********.  

6. spacer 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 9, identity: 0.775

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcggacttcaaaaattatatccaggaatgaaattattatg	Protospacer
    * * ********* ********************  

7. spacer 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 9, identity: 0.775

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
gcgtaatacaaatattagatccaggaatgaaataaatgtg	Protospacer
.  ********* ******************** * *.  

8. spacer 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 10, identity: 0.75

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcacagtccaaagattatatccaggaatgaaattattata	Protospacer
   .*.* ****.**** ********************  

9. spacer 2.2|1928971|40|NZ_CP014219|CRISPRCasFinder matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 11, identity: 0.725

tatttaaaggatttaaactta---catcatttagatctaagag	CRISPR spacer
tatttaaaggatttaaacttagttcattacataggttatc---	Protospacer
*********************   ***.*. ***.*.      

10. spacer 4.1|2330828|40|NZ_CP014219|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 11, identity: 0.725

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
acacaattcaaaaattagatccagaaatgaaatgaaagtg	Protospacer
*  .*** ****************.******** *  .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 574566 : 583982 7 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_2 919904 : 931605 6 Clostridium_botulinum_D_phage(33.33%) NA NA
DBSCAN-SWA_3 1717685 : 1724751 8 uncultured_phage(33.33%) NA NA
DBSCAN-SWA_4 1834729 : 1911320 102 Clostridium_phage(48.89%) capsid,terminase,integrase,tRNA,head,tail,coat,protease,portal attL 1843048:1843066|attR 1918375:1918393
DBSCAN-SWA_5 2720400 : 2759448 47 Clostridium_phage(68.42%) capsid,terminase,bacteriocin,integrase,head,tail,protease,portal attL 2718122:2718181|attR 2759579:2759659
DBSCAN-SWA_6 3121993 : 3128231 6 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_7 3272042 : 3300135 35 Clostridium_phage(80.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage