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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012135 Bordetella pertussis strain J014 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 29 0

Results visualization

1. NZ_CP012135
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012135_1 250591-250675 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012135_2 432034-432127 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012135_3 997401-997495 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012135_4 1820836-1820963 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012135_5 3432458-3432567 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164893 : 225404 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,transposase,protease NA
DBSCAN-SWA_4 233336 : 286924 47 Bacillus_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_5 390857 : 448366 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 590420 : 651611 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 656935 : 703126 51 uncultured_Caudovirales_phage(18.18%) tail,tRNA,transposase,terminase NA
DBSCAN-SWA_8 709292 : 763222 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 885811 : 1026379 114 Bacillus_phage(11.11%) transposase NA
DBSCAN-SWA_10 1047330 : 1097976 42 uncultured_Mediterranean_phage(50.0%) tRNA,transposase,holin NA
DBSCAN-SWA_11 1113230 : 1178302 46 Catovirus(25.0%) tRNA,transposase NA
DBSCAN-SWA_12 1198011 : 1272662 59 Oenococcus_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_13 1293747 : 1339478 46 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_14 1419155 : 1471308 45 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_15 1515233 : 1583319 57 Streptococcus_virus(11.11%) tRNA,transposase NA
DBSCAN-SWA_16 1619268 : 1674855 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1832622 : 1891891 52 Klosneuvirus(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_18 1902131 : 1946454 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_19 1976227 : 2040603 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_20 2172132 : 2221785 43 Synechococcus_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_21 2577564 : 2644064 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_22 2672179 : 2709591 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_23 2808718 : 2863235 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_24 2871260 : 2928046 41 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_25 2958431 : 3002122 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_26 3382060 : 3435801 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_27 3441956 : 3501254 47 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_28 3516192 : 3574265 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_29 4006477 : 4071389 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage