CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP025500	Lactococcus lactis subsp. lactis strain G50 chromosome, complete genome	2 crisprs	cas3,DEDDh,csa3,DinG	1	2	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025500_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025500_1

1208359-1208580

Orphan

Consensus_repeat	Method
TGACCTCAATACTGACCT	CRT

5 spacers

The CRISPR arrays of NZ_CP025500_1

>merge|NZ_CP025500|1|1208359-1208580|CRT
ACTTTTCAATACTGACCTTAATACCGACTCTGATACTGACCTTAATACTGACCTCAATACTGACCCTAATACCGACTCTGATACTGACCTCAATACTGACCTCAATACTGACCTCAATACTGACCTCAATACTGACCTCAATACTGACCTCAATACTGACCCTAATACTGACCTCAATACTGGCCTCAATACTGACCCTAATACTGACCTCAATACTGATAT

>NZ_CP025500|1|1|1208359-1208580|CRT
ACTTTTCAATACTGACCT	TAATACCGACTCTGATAC
TGACCTTAATACTGACCT	CAATACTGACCCTAATACCGACTCTGATAC
TGACCTCAATACTGACCT	CAATACTGACCTCAATAC
TGACCTCAATACTGACCT	CAATACTGACCTCAATACTGACCCTAATAC
TGACCTCAATACTGGCCT	CAATACTGACCCTAATAC
TGACCTCAATACTGATAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025500.1\|WP_010905840.1\|1197496_1198747_+\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NZ_CP025500.1\|WP_103054756.1\|1213242_1218144_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP025500.1\|WP_103054754.1\|1211505_1212039_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP025500.1\|WP_103054753.1\|1210785_1211487_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225917
NZ_CP025500.1\|WP_003131037.1\|1204844_1205915_-\|tyrosine-recombinase-XerS	unknown	unknown	gnl\|CDD\|235339
NZ_CP025500.1\|WP_015426413.1\|1206399_1206687_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025500.1\|WP_103054759.1\|1221662_1222055_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025500.1\|WP_103054746.1\|1198865_1199576_+\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|273524
NZ_CP025500.1\|WP_017864494.1\|1196418_1197441_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP025500.1\|WP_103054755.1\|1212039_1212495_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP025500.1\|WP_103054749.1\|1203456_1204800_+\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP025500.1\|WP_103054757.1\|1218249_1218555_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP025500.1\|WP_103054750.1\|1206770_1207826_-\|tyrosine-recombinase-XerS	unknown	unknown	gnl\|CDD\|235339
NZ_CP025500.1\|WP_103055234.1\|1220619_1221648_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|238483
NZ_CP025500.1\|WP_103054747.1\|1199616_1199997_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP025500.1\|WP_103054748.1\|1200142_1200991_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|376794
NZ_CP025500.1\|WP_103054752.1\|1209611_1210814_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP025500.1\|WP_103054758.1\|1218796_1220296_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP025500.1\|WP_003131148.1\|1201252_1203385_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235516
NZ_CP025500.1\|WP_103054760.1\|1222051_1223503_-\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|176454

Protein	Function_ID	Function_description	E-value
NZ_CP025500.1\|WP_010905840.1\|1197496_1198747_+\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NZ_CP025500.1\|WP_103054756.1\|1213242_1218144_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	5.45105e-32
NZ_CP025500.1\|WP_103054754.1\|1211505_1212039_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.65509e-16
NZ_CP025500.1\|WP_103054753.1\|1210785_1211487_-\|hypothetical-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	3.99454e-65
NZ_CP025500.1\|WP_003131037.1\|1204844_1205915_-\|tyrosine-recombinase-XerS	gnl\|CDD\|235339	PRK05084, xerS, site-specific tyrosine recombinase XerS; Reviewed.	0
NZ_CP025500.1\|WP_103054746.1\|1198865_1199576_+\|acetolactate-decarboxylase	gnl\|CDD\|273524	TIGR01252, Alpha-acetolactate_decarboxylase, alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase. [Energy metabolism, Fermentation].	3.55432e-124
NZ_CP025500.1\|WP_017864494.1\|1196418_1197441_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP025500.1\|WP_103054755.1\|1212039_1212495_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.24454e-18
NZ_CP025500.1\|WP_103054749.1\|1203456_1204800_+\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP025500.1\|WP_103054757.1\|1218249_1218555_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000105858
NZ_CP025500.1\|WP_103054750.1\|1206770_1207826_-\|tyrosine-recombinase-XerS	gnl\|CDD\|235339	PRK05084, xerS, site-specific tyrosine recombinase XerS; Reviewed.	4.86675e-165
NZ_CP025500.1\|WP_103055234.1\|1220619_1221648_-\|recombinase-RecA	gnl\|CDD\|238483	cd00983, recA, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.	1.9097e-164
NZ_CP025500.1\|WP_103054747.1\|1199616_1199997_+\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	3.74725e-65
NZ_CP025500.1\|WP_103054748.1\|1200142_1200991_+\|DNA-protecting-protein-DprA	gnl\|CDD\|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	2.02137e-99
NZ_CP025500.1\|WP_103054752.1\|1209611_1210814_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.65361e-40
NZ_CP025500.1\|WP_103054758.1\|1218796_1220296_+\|hypothetical-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	4.59066e-06
NZ_CP025500.1\|WP_003131148.1\|1201252_1203385_+\|type-I-DNA-topoisomerase	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
NZ_CP025500.1\|WP_103054760.1\|1222051_1223503_-\|Y-family-DNA-polymerase	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	6.67753e-114

>NZ_CP025500.1|WP_103054750.1|1206770_1207826_-|tyrosine-recombinase-XerS
MSENHGYQYNINKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLIDGSITNHNQIKKITLQELENVTKHELEDFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLFLGDETKAFLEFVEHNYENSISNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLHDLNLETGKVNVMRKEGKKDVVPIAQFSHKYINNYFVTRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVSAEAKDALSKL
>NZ_CP025500.1|WP_015426413.1|1206399_1206687_-|hypothetical-protein
MKIIQAVHINGTDKHKRYWKVPDHLQPIRLRKGDEAAVETKSGPQRVKIVAVVTSKDGFLYWKNGDTWHKFEVKQEVLAFFDRKTMEVKYPPKAD
>NZ_CP025500.1|WP_003131037.1|1204844_1205915_-|tyrosine-recombinase-XerS
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLESFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGKLFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDAVPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQTNSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL
>NZ_CP025500.1|WP_103054749.1|1203456_1204800_+|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MKKTHINVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKQTPQHKTDKFAELVCSNSLRGAAITNAVGLLKEEMRRLDSVIIKAAEVTQVPAGGALAVDREGFSDFVTREVSNHPLVEVIREEITDLPEDEITIIATGPLTSDKLAEKIHEFNGADGFYFYDAAAPIIDANSINFDKVYKKSRYDKGEADYINCPMTKEEFQAFQEALISAEEAPLNSFEDLKVFEGCMPIEEMAKRGYKTMLFGPMKPVGLEYPEDYKGPRDGDFKTPYAVVQLRQDNASASLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRKQENLFFAGQMTGVEGYVESAASGLVAGINAVKLFNDEEVVIFPKATAIGSLPYYITHTDSKHFQPMNVTFGIVEELEGPRIRDKKERYTKVAERALNSLTDIISKDNL
>NZ_CP025500.1|WP_003131148.1|1201252_1203385_+|type-I-DNA-topoisomerase
MPTSTKSKTKTTTKKKTTRKRVTPGKNLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLKKSTMSVDIENDYEPQYINIRGKAPLINSLKKEAKAAKAVYLASDPDREGEAISWHLAHILNLPLEEKNRVVFNEITKDAVKNAFKEPRQIDVDLVDAQQARRVLDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIVDRENEINAFIPEEYWSIDGEFKKGTKKFKASFWGIDGKKHPLKTNEDVIKVMERLDGPDFNVDKVEKKERRRNAPLPYTTSSMQQDAANKLNFRTRKTMMVAQQLYEGLTLGSQGHQGLITYMRTDSTRISPVAQSAAHNYIADQFGEKYSKHGSKVKNASGAQDAHEAIRPSNVFNTPDAIAKYLDKDQLKLYTLIWNRFVASQMVAAIFDTVKVNLSQNGVIFIANGSQVKFDGYLRIYNDSDKSNMLPEMEENETVKKANVKPEQHFTQPPARYSEATLIKTLEENGVGRPSTYAPTLETIQKRYYVRLSAKRFEPTELGEIVNKLIVEFFPNIVNTEFTAEMEKDLDEVEEGKRQWIEVVDQFYKPFAKELENAEEGMEKIQIKDEPAGFDCDVCGSPMVIKLGRFGKFYACSNFPDCRNTKAIVKEIGVKCPLCHEGNIIERKTKKNRIFYGCDRYPDCEFTSWDKPIGRDCPKSGHFLVEKKVRGGGKQVVCSNDECDYQEEKQK
>NZ_CP025500.1|WP_103054748.1|1200142_1200991_+|DNA-protecting-protein-DprA
MITNFDLYRWKKAGMTNLGVNKLLKFFHRYDKKISLRQMGQVAQLKSIPNFIEQYKNQDVSKLREEYKIYPSFSLLDEIYPERLKEIYNPPVLLFYQGDIRLLKTRKLAFVGSRQASSQGIKAVQKIVTELNQNFTIVSGLAKGIDTASHLSAIKNNIPTIAVIGTGLDIFYPLENRKIQEYLAKNQLILSEYSVGEKPLRYHFPERNRIIAGLSHGVVVIEAKLRSGSLITCERALEEGRDIFAVPGNIADGFSDGCNHLIQQGAKLIYQAQDILEEYLYD
>NZ_CP025500.1|WP_103054747.1|1199616_1199997_+|RidA-family-protein
MKIIATSDAPAAIGPYVQGKIVNGLLYASGQIPLNPLNGEIVGDSIETQTEQVMKNISAILKEAHSDFDLVIKTTCFLKNIEDFSRFNAIYSKFFDKEFPARSAVGVAGLPKNVLIEIEVFAEVKS
>NZ_CP025500.1|WP_103054746.1|1198865_1199576_+|acetolactate-decarboxylase
MTEITQLFQYNTLGALMAGLYEGTMTIGELLKHGDLGIGTLDSVDGELIVLDGKAYQAKGDKTIVELTDDIKVPYAAVVPHQAEVVFKQKFTTSDKELEDRIESYFDGQNLFRSIKITGEFPKMHVRMIPRAKSGTRFVEVSQNQPEYTEENVKGTIVGIWTPEMFHGVSVAGYHLHFISEDFTFGGHVLDFIIDNGTVEIGAIDQLNQSFPVQDRKFLFADLDIEALKKDIDVAE
>NZ_CP025500.1|WP_010905840.1|1197496_1198747_+|threonine-ammonia-lyase-IlvA
MISAKEVEDAYDLLKAVVTKTPLQLDPYLSNKYQANIYLKEENLQKVRSFKLRGAYYSISKLSDEQRSKGVVCASAGNHAQGVAFAANQLNISATIFMPVTTPNQKISQVKFFGESHVTIRLIGDTFDESARAAKAFSQDNDKPFIDPFDDENVIAGQGTVALEIFAQAKKQGISLDKIFVQIGGGGLIAGITAYSKERYPQTEIIGVEAKGATSMKAAYSAGQPVTLEHIDKFADGIAVATVGQKTYQLINDKVKQLLAVDEGLISQTILELYSKLGIVAEPAGATSVAALELIKDEIKGKNIVCIISGGNNDISRMQEIEERALVYEGLKHYFVINFPQRPGALRTFVSDILGPNDDITRFEYIKRADKGKGPCLVGILLSDASDYDSLIDRIERFDNRYVNLHGNDSLYELLV
>NZ_CP025500.1|WP_017864494.1|1196418_1197441_+|ketol-acid-reductoisomerase
MAVTMYYEDDVEVSALAGKQIAVIGYGSQGHAHAQNLRDSGHNVIIGVRHGKSFDKAKEDGFETFEVGEAVAKADVIMVLAPDELQQSIYEEDIKPNLKAGSALGFAHGFNIHFGYIKVPEDVDVFMVAPKAPGHLVRRTYTEGFGTPALFVSHQNASGHAREIAMDWAKGIGCARVGIIETTFKEETEEDLFGEQAVLCGGLTALVEAGFETLTEAGYAGELAYFEVLHEMKLIVDLMYEGGFTKMRQSISNTAEFGDYVTGPRIITDEVKKNMKLVLADIQSGKFAQDFVDDFKAGRPKLTAYREAAKNLEIEKIGAELRKAMPFTQSGDDDAFKIYQ
>NZ_CP025500.1|WP_103054752.1|1209611_1210814_-|MFS-transporter
MKYLQNLKNKHIPLMMSPFVSQLGLSVYLIGLNWLIVEATGTTKQLGIIQAVSGVAFIITDVFVGVLVDKYNPKVLILLTNLLSALVNFGGAILVNSNHPQTLLLIVTTFSLNIMLAINYPSVKALVPSVIKSNKIQRFNAISNTIYGFASILAPLICSILLSLGKLSFNQFLLVNGLLFLFAALINNRIASPKSYSINISGKFIENLIEGFQYIRRTRKLILLISAMGIFNLCYSGFILLIPYLAKNYFQSNVSIYSIALLLMSLGGLAGGVNLARQTKSINSSKIYLELVIFSLILLGVVSYFNQYTWLGMVAVFGFVQAQLFGSIPTFIQKETDSKYLGRVFGLAFLAFDGAQPLGSLLFSNFIDSLSYKTYIGISIIMFISFVVIFTFEIKYNTSD
>NZ_CP025500.1|WP_103054753.1|1210785_1211487_-|hypothetical-protein
MDSKFKVDNSFWDIFPDASISVLTIKGIDNKVQSAVIARTQELLDSSTIKSEKHLTEDTFSSNAIIQDWRQAFTKFKKKKGARSSIEALLKRVSQGQKFNSINPLVDIYNSISLEYGVPCGGEDLNKISDIMHLGTANGGEAFRPLGSDKDDPALPGEVIYYDNEGAICRSFNWREAQRTMLTENTTDAIMVIEAINEEQQIISEQAILELKYRIQNILGIEGQIEVFTKPQK
>NZ_CP025500.1|WP_103054754.1|1211505_1212039_-|GNAT-family-N-acetyltransferase
MEQEVEIILKVVTLQDVKQLQKISIETFSDTFKDANDEADLKEYLKSAYNIKQLESELSDSDSNFYFVYYKKELAGYLKLNVSNAQTEKHDINALEIERIYIKPNFKRLGLGKYLLNYAIEKAKELDKTSAWLGVWEENINALNFYKKMNFVCFSEHVFELGGEKQRDILMKLIINK
>NZ_CP025500.1|WP_103054755.1|1212039_1212495_-|MarR-family-transcriptional-regulator
MESEILRQIGTISRSLDSISNVEFAQFDLAKGQYLYLSRIKENPGIIQHRLSELLCVDKSTANRAINKLEEKGLITKKDDLVNKKEKHLFITQKGEEIYPVIIRENEYSTKVAAENISPEKMEVFVEVINKMSDNISQNWLDVKKGIKRNY
>NZ_CP025500.1|WP_103054756.1|1213242_1218144_-|BspA-family-leucine-rich-repeat-surface-protein
MRTTNILALSTLLLSTTSPVSLAIADTNEINMTFSSRENQNSSDIQDTLPSSDLEENNIIQNTGSWGTSSWTFDETTGILNISSGKIGVALEAPWNNGVDSSKIITIVISPNTQAPENSSSLFAHLKNLVTIDGFQNLDTFLVTNMEGMFKADENLANIDFSNINTVNVTNMSSMFSSTFSLINYDLSSFNTSNVTDMSAMFASTEAGNLDLSSFDTHNVNNMSSMFEYARLTNVNLSSFNTEKVTTMQAMFSGNPDLVDLNIDNFDTSNVQSMSFMFEGDSNLKSLNLTNFDTSQTTNMRRMFDGCDSLQKLTLGGAFRFKSDASLGLPVPIGGKGTGKWIKEDNTSIGYTSTDFMAFYGTNDLTPGAYVAELIEKPIVVKDLTIYVGDNWTAKDNFVSATDSYGNPVDYTQLTVDDSKVDTNTAGVYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNPVDYTQLTVDDSKVDTNTAGVYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNPVDYTQLTVDDSKVDTNTAGVYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNPVDYTQLTVDDSKVDTNTAGVYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNPVDYTQLTVDDSKVDTNTAGVYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNKVDFTQLTVDDSKVDTNTAGIYDVTYTYDGVTSTAKVTVKDKQTAVNVHDSTLYVGDTWKAEDNFDSALDKDGNPVDYTQLTVDDSKVDTNTAGVYDVTYTYDGVTSTAKVTVKDKQTAVLPTEENEDKGTDTEKNIENNNNINVKSDDSGSEYKLPETGEKQLLVTTTTIFGLVTLLISILLLRKPFKK
>NZ_CP025500.1|WP_103054757.1|1218249_1218555_-|helix-turn-helix-transcriptional-regulator
MSNYTFYNRLKMLSDYYDKSINEVEKDLNYPRNALHNYKGNRLPSGTRLIELSRYFNVSPEYLIGMSHNRELKESSNTRELKKLIKRMKTEILKLESLLNK
>NZ_CP025500.1|WP_103054758.1|1218796_1220296_+|hypothetical-protein
MNKKWEYKGEKIRNMLLANARKKDLDVLYIICTSIKTTYSSIEIKTKITYRTIKAIIKRLNENIYNAFELEGFIISNNKGEVFINSKFISEKFRVFFSLRLYWYKDSSLLKLLTLIVSEGEITRERAADELYLTESGLNKFLKKINQYLKLFSLRISSNRGVLTFSGDEVIIRNFLFKYLYYTYLNLEWPFRKIDIHEIEKISDELFIYNEIYFSDSRSRAFSLFVIILKNRYRAGKYIKSIPDNLIEILEVLHSKRESSILKSNFEESIPDQYKKSEAALIDLFFRMYVPEIDSEEVQNEIGMIFSSLDNRTCQLMSKIITSLDNQFILNKDDKKNIRIYQLVLFVSIYTVFNTSLVPFIYMHFPKPTYHLNTNDNIMKVIKSVVDKTGNLSKERIDIVSSFLYSLYITHFHQKVCIYLEFSKDIAASYYVKNRIRSIYNNENIIFVSNFKVADLIVTDTYDIKKDSEKFFFLLSTNDEKGWKDLIFDIQNLVMEKIF
>NZ_CP025500.1|WP_103055234.1|1220619_1221648_-|recombinase-RecA
MEQPNYTPRRVHKINDPEEKKLAILKATESIEKRFGSNTILDDEGKAAQHVQALPTGILSLDCAIGIGGYPKGRLIELFGAESSGKTTVALQAVAETQKSGGYVAYIDAENSLDIEYAENLGVKSESLIFAQPDTGEEAFYMINEFVKTGAFDLIVVDSVAALTPASEIDGVSIPGQQAKMMSEQLSKLVSKVNQTKTVIIFINQVRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKTTLHTVKNKVSAPYKKPTVINVFGDGFSQEIDVVTLAIQMGVVKKMNEWYSFNGQKLGRGIFSVKEYLASHQIVFETLKIITRESLQFIN
>NZ_CP025500.1|WP_103054759.1|1221662_1222055_-|hypothetical-protein
MSRVDRSYSKYESIRTYEDRGKMKWNPFATAELASAHRDYRTDFNFEEPGFSLEQDDKMTMLSFAKSLQLEITIEYQSEKENKKVTGTILDWKDKTGIIFKKQDGHYQEIDLECIIKLIDKEYFDPYLKQ
>NZ_CP025500.1|WP_103054760.1|1222051_1223503_-|Y-family-DNA-polymerase
MEHFFDYKRELRRAIFFEDVKSNYASIECIERGLNPMTTSLCVMSRADNSNGLILAASPTFKKVFGMSNVSHSKELPFLPDTRKFNYRLWYQKHTDIFGQTVEPDPKYIAEVEYCASQTYIVPPQMLLYIKKNLEIINILREITSIDEIHTYSIDESCLDVTESLDFFFPEIPDKYEQMDKLAQMLQRKIYHQTGLYVTIGMGDNPLLAKLAMDNYAKHSKNMRALIRYEDVPAKIWSISDMTDFWGINVRTEARLNKLGIHSIKELAHADPDMLKRELGVIGLQQFFHANGIDETRLTDHYKRKSVSYSNSQTLPRDYTRKGEIALIVTEMAEQIAVRLRKSKKKATNFSLFVGFSNIDYKKSISVSRKIEATSSTKDIQEIATRLFNEKYDEGAVRRIGVSANNLIDEPYQLISLFDSDEENEETIKQKKDEAVQEALDSIRQKYHFVSVQKATVLKKGSRAVARSKMVGGHSAGGLEGLN

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Crispr_ID: NZ_CP025500_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025500_2

1861776-1861870

Orphan

Consensus_repeat	Method
TTTATTACTGACAGACTTGTCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025500_2

>merge|NZ_CP025500|2|1861776-1861870|CRISPRCasFinder
TTTATTACTGACAGACTTGTCAGCTTTGCTGACAAATCCTTCATCCATTGATAAAAAGCTCAATTCAATCGCTTTTTACTGACAGACTTGTCAGC

>NZ_CP025500|2|1|1861776-1861870|CRISPRCasFinder
TTTATTACTGACAGACTTGTCAGC	TTTGCTGACAAATCCTTCATCCATTGATAAAAAGCTCAATTCAATCG
CTTTTTACTGACAGACTTGTCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025500.1\|WP_103055073.1\|1859356_1860202_+\|2-nitropropane-dioxygenase	unknown	unknown	gnl\|CDD\|132195
NZ_CP025500.1\|WP_103055070.1\|1857960_1858323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025500.1\|WP_004255173.1\|1867930_1868632_-\|adaptor-protein-MecA	unknown	unknown	gnl\|CDD\|227199
NZ_CP025500.1\|WP_004255197.1\|1861988_1862447_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NZ_CP025500.1\|WP_004255158.1\|1869495_1870182_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP025500.1\|WP_103055075.1\|1866602_1867928_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_CP025500.1\|WP_103055067.1\|1854882_1855452_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NZ_CP025500.1\|WP_033899923.1\|1863046_1864264_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP025500.1\|WP_103055072.1\|1858587_1859334_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NZ_CP025500.1\|WP_012898347.1\|1853583_1853889_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226801
NZ_CP025500.1\|WP_004255207.1\|1860342_1861755_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_CP025500.1\|WP_103055076.1\|1868761_1869496_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP025500.1\|WP_103055066.1\|1853905_1854877_-\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|237010
NZ_CP025500.1\|WP_103055069.1\|1856827_1857976_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|273881
NZ_CP025500.1\|WP_004255181.1\|1865657_1866428_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP025500.1\|WP_058223188.1\|1870329_1871238_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP025500.1\|WP_103055068.1\|1855596_1856838_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341288
NZ_CP025500.1\|WP_103055071.1\|1858297_1858591_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025500.1\|WP_010906139.1\|1862562_1863045_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP025500.1\|WP_103055074.1\|1864263_1865520_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791

Protein	Function_ID	Function_description	E-value
NZ_CP025500.1\|WP_103055073.1\|1859356_1860202_+\|2-nitropropane-dioxygenase	gnl\|CDD\|132195	TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.	4.10072e-85
NZ_CP025500.1\|WP_103055075.1\|1866602_1867928_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	1.28127e-85
NZ_CP025500.1\|WP_004255173.1\|1867930_1868632_-\|adaptor-protein-MecA	gnl\|CDD\|227199	COG4862, MecA, Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion].	3.81196e-86
NZ_CP025500.1\|WP_004255197.1\|1861988_1862447_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	9.34852e-67
NZ_CP025500.1\|WP_004255158.1\|1869495_1870182_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.09368e-76
NZ_CP025500.1\|WP_058223188.1\|1870329_1871238_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.84123e-70
NZ_CP025500.1\|WP_103055067.1\|1854882_1855452_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	1.40544e-46
NZ_CP025500.1\|WP_033899923.1\|1863046_1864264_-\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP025500.1\|WP_012898347.1\|1853583_1853889_-\|hypothetical-protein	gnl\|CDD\|226801	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown].	3.59649e-28
NZ_CP025500.1\|WP_103055072.1\|1858587_1859334_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.27642e-71
NZ_CP025500.1\|WP_010906139.1\|1862562_1863045_-\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.28577e-22
NZ_CP025500.1\|WP_004255207.1\|1860342_1861755_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP025500.1\|WP_103055076.1\|1868761_1869496_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.33413e-157
NZ_CP025500.1\|WP_103055066.1\|1853905_1854877_-\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	2.73022e-71
NZ_CP025500.1\|WP_103055069.1\|1856827_1857976_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|273881	TIGR01930, 3-ketoacyl-CoA_thiolase, acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation. [Fatty acid and phospholipid metabolism, Other].	6.69236e-158
NZ_CP025500.1\|WP_004255181.1\|1865657_1866428_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.57723e-148
NZ_CP025500.1\|WP_103055068.1\|1855596_1856838_+\|AMP-binding-protein	gnl\|CDD\|341288	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA. This family of acyl-CoA ligases includes Bacillus subtilis YhfT, as well as long-chain fatty acid-CoA ligase VraA, all of which are as yet to be characterized. These proteins belong to the adenylate-forming enzymes which catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain	1.12143e-66
NZ_CP025500.1\|WP_103055074.1\|1864263_1865520_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	1.83189e-132

>NZ_CP025500.1|WP_004255207.1|1860342_1861755_-|Fe-S-cluster-assembly-protein-SufB
MTENSTQEVVKDLEEYKFGFHDNAELEFTTGLGLTEEVIREISETKNEPEWMLEFRLKSFEAFKKLDMPKWGPDLSGIDFNDIVYYQKPSAKAARSWEDVPQEIKDTFEKIGIPEAERSYLAGASAQYESEVVYHNMKDEFEKLGIIFTDTDSGLRDYPEIFKKYFSKLVPPTDNKLAALNSAVWSGGSFVYVPKGVKCEIPIQAYFRINNEKSGQFERTLIIVEEGASIQYVEGCTAPTYSASSLHAAVVEIFVEEGGYMRYSTIQNWSDNVYNLVTKRAAAEKNATVEWIDGNLGSKVSMKYPAVHLNGPGARGTMLSIAFAGANQNQDTGAKMIHNAPNTSSSIISKSIAKNGGAVNYRGQVTFGKNSKKSASHIECDTILMDDLSKSDTVPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLTEKEATDMIVMGFIEPFTKELPMEYAVELNRLISYSMEGSIG
>NZ_CP025500.1|WP_103055073.1|1859356_1860202_+|2-nitropropane-dioxygenase
MTWYHELGIKYPLFQGGMAWASNAELVAAVSNNGALGIIGSGGRTANELRRMIRKTKTLTSQPFGVNLMLLDKNIKQLLEVICEEKVSVVTTGAGSPKEIIDTIIANNIKLFPVVPNKEIALKMLKLPISGIIVEGNEAGGHVGSQNLASLLKEIAPICALPLIAAGGIYDLHTASLANILGANGVQVGTAFLLAKECQISPIYQELICKSEENGTSLISDENGHLTRLLNISSEHTSNKSLKAAVETGDLINGAFMAGSSSAYLEKIEPVETIIQRIMKK
>NZ_CP025500.1|WP_103055072.1|1858587_1859334_+|SDR-family-NAD(P)-dependent-oxidoreductase
MNKRTILITGATRGIGWAIAQKAAQANHKVILTGRDPLSLKSRAEELQKKFPKTEIQAIPLDVANRSSVANAAKLIKDIDILINNAGITADSTFKKMRPEIWDDVISVNLTGVFNSTHALLDKINQGGQIITLTSKSALFGNFGQANYAASKAGIIAFTKTLAKELKKSMIRVNSVSPAAVTDMTLPVLKSLKETYGQNIPDEWKMGSSSDVANFIINDLIESEMTGKIFSVNSSEIGYWQEPTFHKL
>NZ_CP025500.1|WP_103055071.1|1858297_1858591_+|hypothetical-protein
MKLYKKINKADLIDYLQSVKDTNSLHYGKNPIIPGNFLLFILEEMYQEFYSVPLSYLKVNFCSPAYLNERFCFIFNQNTFQITDRNQTLILRGEWKQ
>NZ_CP025500.1|WP_103055070.1|1857960_1858323_+|hypothetical-protein
MVSKMILIAQKSLPRHFKLEGQKNFLSLLPQLWQELEGIPYSLKNGKNWLLSEEIIRYPSSNYSFDKLKLYLLSEYITRHSKKYIINLSLEITSNTKLLAKINLSLLSEDSWNEIIQKNQ
>NZ_CP025500.1|WP_103055069.1|1856827_1857976_+|acetyl-CoA-C-acyltransferase
MSFKNPVGIIAANRLTIGKINGFYKKISPETLYQNLIKQQFNKNPLLKKADIDYIILGNVTNQGGNLARRCALKAGFSSQVPAFTIDQQCGSGLTAMISSANYIISGEASIICTGGVESTSQANIVLDSESYQPINRFKMAPEPYEDFDMGTLADMTALKYNIPRSVQDLYALNSHKKATQAIEGKLLENEVFPYQDEGFTISSDQTVRPKSSMEALSKLTPAFTTNGTATAGNSCPINDGASSIILSSTNNPFDFQGYYLGQTTIALSPSDFLLGPIKATEKLLQKFNLKLNDIEAIELNEAFASQAILFQNYFKLDDIKLNAYGGALAFGHPYGATGGILISRLLNRLNQVQKPCLGIATLCVAGGMGISVLIGNHWYQK
>NZ_CP025500.1|WP_103055068.1|1855596_1856838_+|AMP-binding-protein
MEKNKFNFSKLTALFTDYPALKIDETSYSYQQINDLIQKKLTDYSHSSKTVITLINDSPLNFIIDFLAIIESGNYPLVVDKSFKKRSFEFGLIPEDTLFLASTSGTTGPPKIYYRNWESWKMGFEVCDDLFHLSNSQALATTSPLTTSLGLHTLMCALYLGKTFLAITNPSQFINIKESYVLFTVPTYLLNNLNELFALTSPEIIFLGGGTLSPKAINKVRKKLPQTQMIEFYGSSETSFISWQAVTDGKKTASVGKLFPYVELTLGPKYRLTVKSPYLFSGYLNQPYPQSWTTDDLGTLKNNQLYLFGRRSDIIEHGANKIFPEEIERMAKDLCEDCIAFGVFDERYSQKIALLLLNPIEKEKLIKILAQRLPKYKLPQIYLETPTLNFTKNQKISRKDLEKEYFRGVYHEL
>NZ_CP025500.1|WP_103055067.1|1854882_1855452_-|biotin-transporter-BioY
MTKNQKVKTLTYSAFMTTFIIILGFLPGIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLTLALIGLPVLTGGNGGAASFLGPSGGYRMAWLFTPFLIGFFLKKLQITASKNWIGELIIVLVFGVIFVDLVGAIWLSIQSNIPLITSLISNLVFIPGDCIKAILTVLIVRRLRKEGGFEMYFRK
>NZ_CP025500.1|WP_103055066.1|1853905_1854877_-|biotin--[acetyl-CoA-carboxylase]-ligase
MRTTKQFVLLKLLQQKGNWVSGDELAEELKLSRESIWKAINTLKRKGNQIESRKNLGYKYVGNDSLDEDTINFYSGMKFEDKIFVFDEVTSTQEFAKQYLSSHEVKQPFIFVANNQTEGHGRRGRNFYSPSDTGLYFSLILPNPSHDILKIGLLTTSTAVAVVKVLEQFYKDKNFQLKWVNDIYLGTYKVGGIITEAALDLETSSAGNFIMGIGLNLSTKDFPADLSEKAQGINPEFKIDRNQLLAEMAKEVINNFANYRKPDLIDEYRKRSLLFGKNVTLKLGTKAVNGQVEGISDDGSLILKAKSGEIQTFKSGEVVKVDW
>NZ_CP025500.1|WP_012898347.1|1853583_1853889_-|hypothetical-protein
MREKIWGKVIDEEGRCTHYHQENDIVALKCSDCEKYFSCYHCHDELENHLFRATDKEDFPVLCGHCGTKLNFNDYSRGECIKCSSAFNPNCHRHWQVYFNE
>NZ_CP025500.1|WP_004255197.1|1861988_1862447_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MALSKLDNLYRAVILDHSSNPRHAGELQTGCMVDLNNPTCGDVIRLTVEFENDVISNIAFSGHGCTISTASASMMTVAVLGKTKEEAKELATIFSAMVTGETDERQEKLGDAQFLAGVSKFPARVKCSTLAWNALKKAIDVGEAQETVIHGE
>NZ_CP025500.1|WP_010906139.1|1862562_1863045_-|hypothetical-protein
MLNWVASLPLWLATTFLFVVVFFRAQCTFWLGKLSYHGILKTKWGKKLEKNSETSAGILAIQKMGWPIIPLSFLTVGFQTAVQFGAGLTNWSWYKYTLAAIPGYLAWGFIYASGGLSLFRSLVQGSIGLLILFIIIILAVVIAANLVLRYIRKNGIKTDD
>NZ_CP025500.1|WP_033899923.1|1863046_1864264_-|cysteine-desulfurase
MLEGIKKDFPVLNQIVNDEPLVYLDNAATTQKPLKVLAAIKDYYENDNANVHRGVHTLAERATEKYEAAREKVRQFINAKSTKEVLFTRGTTTSINWVAQFAGQILKTGDEIVISIMEHHSNIVPWQEVAKKTGAILKFVYLKDGQLDMDDLRKKITNQTKFVSIAHVSNVLGTINPVEEITKIAHEHGAYMVVDGAQSTPHMAIDLQKMDVDFFAFSGHKMMGPTGIGVLYGKEELLNQFEPVEFGGEMIDFVYESHSTWTELPWKFEAGTPNIAGAIALGAAIDYIQELGIDQIHQHEIELIDYLMPKLQEIEGLKIYGPKDNVKRGGLIAFNIEGLHPHDVATALDMEGVAVRAGHHCAQPLLNYLETPATARASFYLYNTKADCDKLVEALKKTKEFFNLD
>NZ_CP025500.1|WP_103055074.1|1864263_1865520_-|Fe-S-cluster-assembly-protein-SufD
MNQEILNFSQMHAEPAWLSDLRQKAALEFENLELPNIERVKINRWGLDDLTISENEEIGSVPTFTEIPNHPLLVQVGSQTVMEQMTPNLAEQGVIFTDFNSALTEIPELLEENFGSVVPFNESRLTAANTATFNSGLVLYVPDGVEVLEPIESILMQEGSSEVPFNKRILIIVGKNAKVDYLERLETSGEQSSKVKANIVVEVIAKAGAQVKFAAIDRLGENVTASVVRRGLIGDNATVDWSVGVMNDGNVVADFDSDLKGNGSHSQIKVVGISTGHQTQGIDTRVTNFGLNSVGHILQNGVILDKGTLTFNAIGHIIKGAKNADAQQSSHVLMLSDKGRGDANPILLIDENEVTAGHAASVGQVDEEDLFYLQSRGLDEETAKRLVIRGFLGSVVSEIPVKSVQAEFIETIERKLGM
>NZ_CP025500.1|WP_004255181.1|1865657_1866428_-|Fe-S-cluster-assembly-ATPase-SufC
MATLEIKNLHVAIEDKEILKGVNLVINTNEIHAIMGPNGTGKSTLSAAIMGNPNYSVTQGEVLFDGQNVLEMSVDERARLGLFLAMQYPSEIPGITNAEFLRAAMNAKRAEDDKVSVMEFIKKLDKNMEVLSMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFAILDEIDSGLDIDALKVVAKGVNSMRGEKFGALIITHYQRLLDYITPDVVHIMMDGRVVKTGGAELAKRLETEGYVNIAEELGLEYKEEV
>NZ_CP025500.1|WP_103055075.1|1866602_1867928_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MVDTLKEIPFALKFLIVIIITFGISVILTPIMTFVSKAIGAVDKPNERRVNKKPMPSAGGLVIFIAFAIATLFILPHIVHNQPPIHSQPPVHGASHQPIQLVSYFSYIWPFIVGAGIVVLTGLIDDIKEISPKMKLLGLTVAASFIWFFTNARFDNLKIPFGGPLLIFPAWLSFIFTVFWILAITNAINLIDGLDGLASGVSIISLTTMGIVSYFFLPSPNVFLPITIFIMVAAIMGFFPYNYHPAIIYLGDTGALFLGFIISVASLQGLKNATAVAVLTPLLILGVPITDTIMAMVRRKLNRQSIATADKRHLHHRLMALGFTHRGAVLVIYGIASIFAFISILLQFSSRIGGILLVIACLFGLEIFIELVGILGENRQPVLKALKFVGNSSYRDKVLHSDEDTDENEEDIENHSMIDEEIDEPTQEFPIQNYRRSRNKK
>NZ_CP025500.1|WP_004255173.1|1867930_1868632_-|adaptor-protein-MecA
MKYEDINENTIKITLSFDDLTDYDIKLSDFFGNQEVIEQFFYELVDELGLENRFGNVGMLTFQIQPFPQGVHMIVHEEAMLGEGGEIPDDPEEFEELMTGFYNKLNEIGADMARERGITDFKPGLGLPGTKKDEAEQEPDFIYYSIRYEDIMSVLTGIKNVKFADEESEFYRYDGNFYLVVLDNQKEKGKMHVESTRSRMMEYGEATKMSREFLQEYGECLIATRALDVLRKI
>NZ_CP025500.1|WP_103055076.1|1868761_1869496_-|amino-acid-ABC-transporter-ATP-binding-protein
MNEYLIEIKNLHKYFGKNEVLKGLDIQIKKGEVVVMIGPSGSGKSTFLRTMNLLEKPTDGQVYFEGVNIADKSVDVFKHREKMGMVFQQFNLFPNMTVLENLCLAPVKTGKMTKEEAKKTAENLLQRVGLSDKAEAYPQALSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLAVMQELAKEGMTMVVVTHEMGFAKTVADRVLFMADGTIVEQGKPAQVFGSPKEKRTQDFLAKVL
>NZ_CP025500.1|WP_004255158.1|1869495_1870182_-|amino-acid-ABC-transporter-permease
MNFDFLPKYLPYFNDGMIVTILISAFVVLIGTLLGIVTALAKISKIAPLRWLANIYIEIFRGTPMLVQIMLGFGLMGSLSLPTFQVGILQQDLGRLIPGIIVISLNSGAYMAEIVRAGIEAVPLGQKEAAYSLGIRPRQAMATVILPQALRNILPAVGNEFVTIIKDSSLLYTIGVMEVFNGAQTVANLTYQTISPMLFVALYYFVVTFVVSRLLVLFEKKLGKGYAK
>NZ_CP025500.1|WP_058223188.1|1870329_1871238_-|diacylglycerol-kinase-family-lipid-kinase
MTYYLLANPNSGAGKGARTLETLIPYLEKNNYEYRLFKTKAAGEEGALVRQILDLKNSDDHLVIIGGDGTISLVINELPEEEAFSYIPSGSGNDFARSLKLKLDPIESFEAARRGINHEIFIMNYQSKGLSGYALNNIGIGLDATIVKSANEGKLKQVLNKLKLGSFSYILTALHVLITKKPFPALIEVENQEISLENAFLMTFTKHPYFGGGVKISPEATNENADIHLVEYNKHHLLRTFSLIPSVLRGMHLKHPLFLHRVSPQFSVELAESQPVQIDGEIHELVAADRLSISTERRMIIY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP025500_1	1.1\|1208377\|18\|NZ_CP025500\|CRT	1208377-1208394	18	NZ_CP025500.1	1233251-1233268	2	0.889

1. spacer 1.1|1208377|18|NZ_CP025500|CRT matches to position: 1233251-1233268, mismatch: 2, identity: 0.889

taataccgactctgatac	CRISPR spacer
taataccgaccctaatac	Protospacer
**********.**.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43814-43843	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43826-43855	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43838-43867	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43850-43879	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43862-43891	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43874-43903	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43886-43915	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43898-43927	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43910-43939	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43922-43951	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43934-43963	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43946-43975	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43958-43987	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43970-43999	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43982-44011	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	43994-44023	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44006-44035	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44018-44047	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44030-44059	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44042-44071	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44054-44083	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44066-44095	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44078-44107	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44090-44119	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44102-44131	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44114-44143	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44126-44155	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44138-44167	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44150-44179	2	0.933
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	44162-44191	2	0.933
NZ_CP025500_1	1.2\|1208413\|30\|NZ_CP025500\|CRT	1208413-1208442	30	NZ_KM007160	Lactococcus garvieae strain IPLA 31405 plasmid pLG42, complete sequence	29259-29288	5	0.833
NZ_CP025500_1	1.2\|1208413\|30\|NZ_CP025500\|CRT	1208413-1208442	30	NZ_CP042421	Leuconostoc lactis strain CBA3622 plasmid unnamed1, complete sequence	29447-29476	5	0.833
NZ_CP025500_1	1.2\|1208413\|30\|NZ_CP025500\|CRT	1208413-1208442	30	NZ_CP042421	Leuconostoc lactis strain CBA3622 plasmid unnamed1, complete sequence	29351-29380	5	0.833
NZ_CP025500_1	1.2\|1208413\|30\|NZ_CP025500\|CRT	1208413-1208442	30	NZ_LN774771	Lactococcus piscium MKFS47 plasmid III, complete sequence	45748-45777	5	0.833
NZ_CP025500_1	1.2\|1208413\|30\|NZ_CP025500\|CRT	1208413-1208442	30	NZ_LN774771	Lactococcus piscium MKFS47 plasmid III, complete sequence	45856-45885	5	0.833
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	MN693027	Marine virus AFVG_117M71, complete genome	3868-3897	7	0.767
NZ_CP025500_1	1.4\|1208497\|30\|NZ_CP025500\|CRT	1208497-1208526	30	MN693700	Marine virus AFVG_250M620, complete genome	3884-3913	7	0.767

1. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

2. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

3. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

4. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

5. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

6. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

7. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

8. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

9. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

10. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

11. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

12. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

13. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

14. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

15. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

16. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

17. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

18. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

19. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

20. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

21. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

22. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

23. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

24. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

25. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

26. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

27. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

28. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

29. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
caatactgaccccaatactgaccccaatac	Protospacer
***********.************.*****

30. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 2, identity: 0.933

caatactgacctcaatactgaccctaatac	CRISPR spacer
cgatactgacctcaatactgaccccaatac	Protospacer
*.**********************.*****

31. spacer 1.2|1208413|30|NZ_CP025500|CRT matches to NZ_KM007160 (Lactococcus garvieae strain IPLA 31405 plasmid pLG42, complete sequence) position: , mismatch: 5, identity: 0.833

caatactgaccctaataccgactctgatac	CRISPR spacer
taatactgaccctaataccgacctcaatac	Protospacer
.*********************....****

32. spacer 1.2|1208413|30|NZ_CP025500|CRT matches to NZ_CP042421 (Leuconostoc lactis strain CBA3622 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

caatactgaccctaataccgactctgatac	CRISPR spacer
taatactgaccctaataccgacctcaatac	Protospacer
.*********************....****

33. spacer 1.2|1208413|30|NZ_CP025500|CRT matches to NZ_CP042421 (Leuconostoc lactis strain CBA3622 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

caatactgaccctaataccgactctgatac	CRISPR spacer
caataccgaccctaataccgacctcaatac	Protospacer
******.***************....****

34. spacer 1.2|1208413|30|NZ_CP025500|CRT matches to NZ_LN774771 (Lactococcus piscium MKFS47 plasmid III, complete sequence) position: , mismatch: 5, identity: 0.833

caatactgaccctaataccgactctgatac	CRISPR spacer
taatactgaccctaataccgacctcaatac	Protospacer
.*********************....****

35. spacer 1.2|1208413|30|NZ_CP025500|CRT matches to NZ_LN774771 (Lactococcus piscium MKFS47 plasmid III, complete sequence) position: , mismatch: 5, identity: 0.833

caatactgaccctaataccgactctgatac	CRISPR spacer
caataccgaccctaataccgacctcaatac	Protospacer
******.***************....****

36. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to MN693027 (Marine virus AFVG_117M71, complete genome) position: , mismatch: 7, identity: 0.767

caatactgacctcaatactgaccctaatac	CRISPR spacer
cgataatgacctcaatgctgaccctgaact	Protospacer
*.*** **********.********.*  .

37. spacer 1.4|1208497|30|NZ_CP025500|CRT matches to MN693700 (Marine virus AFVG_250M620, complete genome) position: , mismatch: 7, identity: 0.767

caatactgacctcaatactgaccctaatac	CRISPR spacer
cgataatgacctcaatgctgaccctgaact	Protospacer
*.*** **********.********.*  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

399902 : 412031

Streptococcus_phage(40.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003131595.1\|399902_400220_+	thioredoxin family protein	A0A0K2FIM3	Achromobacter_phage	4.5e-05	30.4
WP_003131594.1\|400305_400932_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_058219163.1\|401094_402435_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010905314.1\|402523_402913_+	single-stranded DNA-binding protein	A0A0K0MWE1	Streptococcus_phage	1.4e-24	45.0
WP_003131589.1\|403032_403317_+	co-chaperone GroES	A0A221S386	uncultured_virus	3.1e-13	44.1
WP_058206244.1\|403404_405033_+	chaperonin GroEL	A0A219YK78	uncultured_virus	2.2e-156	56.8
WP_003131583.1\|405077_405890_-	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	3.1e-34	38.1
WP_010905315.1\|406060_407503_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.4e-32	33.0
WP_003131580.1\|407495_408197_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-42	39.7
WP_103054462.1\|408374_409010_+	dTMP kinase	M1PSC7	Streptococcus_phage	7.0e-74	65.0
WP_057719679.1\|409142_410003_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	3.0e-67	45.5
WP_010905316.1\|410054_410837_+	stage 0 sporulation family protein	NA	NA	NA	NA
WP_003131570.1\|410829_411156_+	DNA replication initiation control protein YabA	NA	NA	NA	NA
WP_103054463.1\|411155_412031_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.6e-99	65.4

DBSCAN-SWA_2

996373 : 1019827

Staphylococcus_phage(21.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003130964.1\|996373_997066_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	2.7e-31	34.4
WP_033900035.1\|997058_997994_+	ABC transporter permease	NA	NA	NA	NA
WP_012897610.1\|998096_999074_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.9e-118	66.0
WP_033900033.1\|999423_1001592_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	8.6e-257	61.0
WP_003130968.1\|1001727_1002150_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.3e-12	37.3
WP_012897612.1\|1002151_1002370_-	redoxin NrdH	C3U2K9	Lactococcus_phage	7.6e-12	47.6
WP_010905665.1\|1002543_1003185_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_012897614.1\|1003459_1005394_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.1e-125	43.5
WP_021722548.1\|1005598_1006138_+	cysteine hydrolase family protein	NA	NA	NA	NA
WP_058211984.1\|1006130_1006964_+	3'-5' exonuclease	A0A0K2SUJ2	Clostridium_phage	3.1e-21	39.4
WP_033900027.1\|1006960_1007410_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_033900025.1\|1007684_1010159_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.6e-97	32.2
WP_003130981.1\|1010184_1011090_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_103054690.1\|1011558_1012647_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.4e-50	38.8
WP_103054691.1\|1012646_1013297_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.2e-42	44.1
WP_103054692.1\|1013305_1014502_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-111	51.5
WP_003130993.1\|1014529_1014994_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.8e-39	53.7
WP_033900240.1\|1015096_1015549_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_003130995.1\|1015609_1016515_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	5.4e-11	28.2
WP_003130996.1\|1016662_1017106_+	divergent PAP2 family protein	NA	NA	NA	NA
WP_052062151.1\|1017245_1018868_+	hypothetical protein	NA	NA	NA	NA
WP_015426264.1\|1018870_1019827_+	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	4.0e-49	37.5

DBSCAN-SWA_3

1504133 : 1514435

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103054884.1\|1504133_1505690_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	4.0e-70	45.6
WP_103054885.1\|1505865_1506408_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.8e-09	29.9
WP_103054886.1\|1506544_1507582_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_103054887.1\|1507712_1508243_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_058203020.1\|1508293_1509883_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.7e-10	22.4
WP_103054888.1\|1510049_1510598_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.0e-18	30.6
WP_012898140.1\|1510626_1511643_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	6.4e-61	41.8
WP_103054889.1\|1511831_1514435_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	1.2e-124	32.7

DBSCAN-SWA_4

1590922 : 1609849

Lactococcus_phage(68.42%)

integrase,holin

attL 1598766:1598780|attR 1615179:1615193

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103054926.1\|1590922_1591702_-\|holin	phage holin	Q9AZW7	Lactococcus_phage	2.5e-121	93.1
WP_103054927.1\|1591701_1591977_-	Holin	A0A182BQ79	Lactococcus_phage	1.6e-14	56.9
WP_103054928.1\|1591989_1592211_-\|holin	holin	A0A191KBQ1	Streptococcus_virus	1.5e-20	66.7
WP_103054930.1\|1593256_1593988_-	M23 family metallopeptidase	Q6SEC2	Lactobacillus_prophage	4.8e-26	41.0
WP_103054931.1\|1594268_1594658_-	DUF722 domain-containing protein	A5GYP6	Lactococcus_phage	8.1e-65	93.0
WP_145957842.1\|1594775_1595045_+	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_103054934.1\|1595562_1595805_-	hypothetical protein	A5GZ49	Lactococcus_phage	2.5e-32	80.0
WP_103054935.1\|1597122_1597923_-	recombinase RecT	Q9AZQ0	Lactococcus_phage	1.9e-76	60.5
WP_103054936.1\|1597915_1598752_-	hypothetical protein	A0A1P8BKZ1	Lactococcus_phage	4.0e-93	72.8
1598766:1598780	attL	NA	NA	NA	NA
WP_098384009.1\|1598854_1599091_-	DUF1408 domain-containing protein	A0A1P8BMJ7	Lactococcus_phage	2.8e-36	94.9
WP_098384010.1\|1599185_1599410_+	hypothetical protein	NA	NA	NA	NA
WP_103054937.1\|1599640_1599979_-	hypothetical protein	A0A1B1IMQ1	Lactococcus_phage	1.9e-57	96.4
WP_103054938.1\|1599992_1600793_-	phage antirepressor KilAC domain-containing protein	Q38330	Lactococcus_phage	1.5e-94	70.3
WP_058207036.1\|1600810_1601059_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_103054939.1\|1601213_1601717_+	hypothetical protein	NA	NA	NA	NA
WP_098384014.1\|1602265_1602751_+	XRE family transcriptional regulator	Q9G0E8	Lactococcus_phage	3.3e-31	55.8
WP_103054940.1\|1602761_1603349_+	hypothetical protein	Q9AZW4	Lactococcus_phage	1.8e-92	85.6
WP_058205866.1\|1603363_1603564_+	hypothetical protein	Q9T1Z0	Lactococcus_phage	7.1e-25	93.5
WP_103054941.1\|1603619_1603958_+	DUF898 family protein	S5MNN8	Brevibacillus_phage	3.0e-15	66.7
WP_103054942.1\|1604058_1604934_+	hypothetical protein	NA	NA	NA	NA
WP_103054943.1\|1605063_1606203_+\|integrase	site-specific integrase	A0A1B1IMP1	Lactococcus_phage	6.6e-208	96.6
WP_103054944.1\|1606305_1607379_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.0e-60	35.3
WP_033898645.1\|1607441_1608374_-	aspartate carbamoyltransferase catalytic subunit	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.8e-23	30.5
WP_010906053.1\|1608556_1609849_-	uracil-xanthine permease	Q9KX94	Enterobacteria_phage	1.6e-61	35.9
1615179:1615193	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1657598 : 1698060

Lactococcus_phage(84.09%)

holin,terminase,protease,capsid,integrase,portal,tail,head

attL 1656137:1656152|attR 1702105:1702120

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1656137:1656152	attL	NA	NA	NA	NA
WP_103054970.1\|1657598_1658003_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	7.4e-29	48.8
WP_161494991.1\|1658108_1659272_-	acyltransferase family protein	A9YX16	Burkholderia_phage	1.2e-15	29.2
WP_103054972.1\|1659369_1660149_-\|holin	phage holin	A0A1P8BKR7	Lactococcus_phage	3.4e-123	95.8
WP_103054973.1\|1660148_1660424_-	Holin	A0A182BQ79	Lactococcus_phage	2.4e-15	59.7
WP_058204022.1\|1660436_1660658_-\|holin	holin	A0A191KBQ1	Streptococcus_virus	4.5e-20	63.9
WP_103054974.1\|1660675_1661911_-	hypothetical protein	Q1RNC2	Lactococcus_phage	3.5e-29	47.0
WP_103054975.1\|1662044_1664483_-	hypothetical protein	A0A059NT86	Lactococcus_phage	0.0e+00	77.3
WP_058210236.1\|1664493_1664859_-	hypothetical protein	A0A059NT91	Lactococcus_phage	2.3e-61	95.0
WP_103054976.1\|1664870_1668890_-\|tail	phage tail protein	A0A059NT57	Lactococcus_phage	0.0e+00	70.5
WP_103054977.1\|1668920_1669292_-	hypothetical protein	A0A172LN91	Lactococcus_phage	1.3e-43	72.4
WP_021722204.1\|1669315_1669726_-	hypothetical protein	A0A182BQ86	Lactococcus_phage	7.0e-51	75.7
WP_103054978.1\|1669801_1670041_-	hypothetical protein	A5GYM0	Lactococcus_phage	2.8e-07	60.3
WP_058203522.1\|1670066_1670480_-	hypothetical protein	A0A182BQ87	Lactococcus_phage	5.2e-62	83.1
WP_103054979.1\|1670492_1670855_-	hypothetical protein	A0A182BQ88	Lactococcus_phage	7.5e-57	92.5
WP_103054980.1\|1670854_1671403_-	hypothetical protein	A0A059NT55	Lactococcus_phage	1.1e-96	98.4
WP_103054981.1\|1671386_1671734_-	hypothetical protein	A0A182BQ90	Lactococcus_phage	6.3e-45	82.5
WP_011834804.1\|1671714_1672047_-	hypothetical protein	A0A059NT99	Lactococcus_phage	1.3e-55	100.0
WP_103054982.1\|1672066_1673185_-\|capsid	major capsid protein	A0A182BQ73	Lactococcus_phage	1.5e-148	84.0
WP_103054983.1\|1673196_1673823_-	DUF4355 domain-containing protein	A0A059NT87	Lactococcus_phage	1.0e-72	92.8
WP_103054984.1\|1673999_1674272_+	DUF3892 domain-containing protein	A0A059NT53	Lactococcus_phage	4.1e-39	98.9
WP_103054985.1\|1674529_1675636_-\|head	phage head morphogenesis protein	A0A059NT80	Lactococcus_phage	5.7e-196	95.9
WP_103054986.1\|1675780_1676068_-\|protease	ribosomal-processing cysteine protease Prp	A0A182BQ95	Lactococcus_phage	4.7e-46	94.7
WP_103054987.1\|1676188_1677697_-\|portal	phage portal protein	A0A182BQ97	Lactococcus_phage	1.2e-244	97.8
WP_103054988.1\|1677705_1678941_-\|terminase	PBSX family phage terminase large subunit	A0A182BQ98	Lactococcus_phage	2.6e-242	99.0
WP_103054989.1\|1678930_1679443_-\|terminase	terminase small subunit	A0A182BQ99	Lactococcus_phage	9.3e-77	91.2
WP_103054990.1\|1680651_1681074_-	DUF722 domain-containing protein	A0A182BQA1	Lactococcus_phage	3.0e-57	98.6
WP_161494992.1\|1681302_1681479_-	hypothetical protein	NA	NA	NA	NA
WP_038600435.1\|1681713_1681923_+	hypothetical protein	NA	NA	NA	NA
WP_103054991.1\|1681973_1682195_-	DUF1660 domain-containing protein	A0A182BQA2	Lactococcus_phage	8.4e-35	93.2
WP_103054992.1\|1682191_1682416_-	hypothetical protein	A0A1P8BMS6	Lactococcus_phage	5.6e-10	50.0
WP_103054993.1\|1682563_1683232_+	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_103054994.1\|1683271_1683682_-	hypothetical protein	A5GZ50	Lactococcus_phage	3.2e-72	97.0
WP_103054995.1\|1683694_1683937_-	hypothetical protein	A5GZ49	Lactococcus_phage	1.7e-36	87.5
WP_103055239.1\|1683929_1684775_-	DnaD domain protein	A5GZ47	Lactococcus_phage	6.5e-67	65.6
WP_103054996.1\|1685015_1686011_-	DUF1351 domain-containing protein	A0A1P8BLG1	Lactococcus_phage	1.8e-129	81.0
WP_103054997.1\|1686012_1686750_-	phage recombination protein Bet	A0A1B1IMV3	Lactococcus_phage	1.6e-130	96.3
WP_017865013.1\|1686873_1687089_-	DUF1408 domain-containing protein	Q38272	Lactococcus_phage	5.3e-34	98.6
WP_058211380.1\|1687088_1687289_-	helix-turn-helix transcriptional regulator	A0A1X9I6I3	Streptococcus_phage	1.5e-06	43.5
WP_103054998.1\|1687437_1687638_+	hypothetical protein	NA	NA	NA	NA
WP_011834775.1\|1687912_1688149_-	helix-turn-helix domain-containing protein	A0A059NT59	Lactococcus_phage	4.3e-37	100.0
WP_103054999.1\|1688161_1688965_-	phage antirepressor KilAC domain-containing protein	A0A1P8BLA9	Lactococcus_phage	1.0e-90	67.5
WP_058205862.1\|1688980_1689229_-	helix-turn-helix transcriptional regulator	A0A097BYF3	Leuconostoc_phage	1.5e-11	55.7
WP_103055000.1\|1689323_1690232_+	hypothetical protein	NA	NA	NA	NA
WP_103055001.1\|1690213_1690411_-	hypothetical protein	NA	NA	NA	NA
WP_103055002.1\|1690673_1691198_+	XRE family transcriptional regulator	Q9AZW3	Lactococcus_phage	3.0e-30	50.6
WP_103055003.1\|1691208_1691796_+	hypothetical protein	Q9AZW4	Lactococcus_phage	6.9e-92	83.0
WP_103055004.1\|1691847_1692048_+	hypothetical protein	A0A1P8BM79	Lactococcus_phage	2.0e-27	93.8
WP_103055005.1\|1692089_1693085_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	3.8e-90	51.1
WP_103055006.1\|1693324_1694458_+\|integrase	site-specific integrase	A0A059NT56	Lactococcus_phage	6.0e-201	97.6
WP_003129432.1\|1694651_1695626_-	D-ribose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_103055007.1\|1695637_1696579_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_103055008.1\|1696581_1698060_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-14	30.9
1702105:1702120	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1785336 : 1795195

Prochlorococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003130886.1\|1785336_1786098_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-17	30.0
WP_003130885.1\|1786263_1787073_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.0e-10	26.5
WP_003130884.1\|1787106_1788000_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_021722156.1\|1787999_1788923_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_103055043.1\|1789043_1789895_-	phosphate ABC transporter substrate-binding protein	E3SNT9	Prochlorococcus_phage	3.2e-05	27.5
WP_003130880.1\|1790241_1791138_-	phosphate ABC transporter substrate-binding protein	E3SM63	Prochlorococcus_phage	7.2e-08	32.4
WP_003130878.1\|1791415_1791883_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.7e-43	56.6
WP_103055044.1\|1791914_1792490_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_103055045.1\|1792576_1795195_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-64	33.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP025500

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection