CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP026568	Pseudomonas syringae pv. syringae strain Pss9097 chromosome, complete genome	7 crisprs	cas3,DEDDh,csa3,DinG,RT	1	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP026568_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026568_1

91426-91523

Orphan

Consensus_repeat	Method
GCGTCGTCAAGAGGACGCGGAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026568_1

>merge|NZ_CP026568|1|91426-91523|CRISPRCasFinder
GCGTCGTCAAGAGGACGCGGAGCGTCCGGAAAGGCATGCTACGCGGAGCGTGGGAATGCAGGTCTCGACGCTCTGCGTCGCCAAGAGGACGCGGAGCG

>NZ_CP026568|1|1|91426-91523|CRISPRCasFinder
GCGTCGTCAAGAGGACGCGGAGCG	TCCGGAAAGGCATGCTACGCGGAGCGTGGGAATGCAGGTCTCGACGCTCT
GCGTCGCCAAGAGGACGCGGAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026568.1\|WP_154583773.1\|96191_96344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_011266164.1\|79886_81539_-\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NZ_CP026568.1\|WP_024641759.1\|84222_85143_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP026568.1\|WP_011266161.1\|75916_77158_+\|spore-maturation-protein	unknown	unknown	gnl\|CDD\|225336
NZ_CP026568.1\|WP_054091702.1\|91606_92926_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP026568.1\|WP_054091700.1\|95350_96163_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP026568.1\|WP_002551394.1\|97347_98220_-\|sulfate-ABC-transporter-permease-subunit-CysW	unknown	unknown	gnl\|CDD\|226665
NZ_CP026568.1\|WP_003401587.1\|90626_91196_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP026568.1\|WP_024640681.1\|82059_84036_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|375045
NZ_CP026568.1\|WP_054091569.1\|78452_79829_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP026568.1\|WP_054091698.1\|99149_100160_-\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224529
NZ_CP026568.1\|WP_003401585.1\|88565_90575_+\|DNA-helicase-Rep	unknown	unknown	gnl\|CDD\|130146
NZ_CP026568.1\|WP_054091568.1\|77162_78356_-\|DUF2914-domain-containing-protein	unknown	unknown	gnl\|CDD\|378567
NZ_CP026568.1\|WP_003401602.1\|98233_99055_-\|sulfate-ABC-transporter-permease-subunit-CysT	unknown	unknown	gnl\|CDD\|131194
NZ_CP026568.1\|WP_046235689.1\|93192_94077_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP026568.1\|WP_054091699.1\|96364_97345_-\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
NZ_CP026568.1\|WP_054091701.1\|94104_95358_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223523
NZ_CP026568.1\|WP_011266167.1\|85301_86684_+\|NorM-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|166843
NZ_CP026568.1\|WP_003367675.1\|100312_100492_-\|sulfur-starvation-response-protein-OscA	unknown	unknown	gnl\|CDD\|227870
NZ_CP026568.1\|WP_054091570.1\|86696_88361_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
NZ_CP026568.1\|WP_011266164.1\|79886_81539_-\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	8.95775e-166
NZ_CP026568.1\|WP_024641759.1\|84222_85143_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.61882e-72
NZ_CP026568.1\|WP_011266161.1\|75916_77158_+\|spore-maturation-protein	gnl\|CDD\|225336	COG2715, SpmA, Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only].	3.19652e-87
NZ_CP026568.1\|WP_054091702.1\|91606_92926_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	2.81916e-120
NZ_CP026568.1\|WP_054091700.1\|95350_96163_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.28267e-25
NZ_CP026568.1\|WP_002551394.1\|97347_98220_-\|sulfate-ABC-transporter-permease-subunit-CysW	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	6.85386e-147
NZ_CP026568.1\|WP_003401587.1\|90626_91196_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	2.34556e-125
NZ_CP026568.1\|WP_024640681.1\|82059_84036_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|375045	pfam17201, Cache_3-Cache_2, Cache 3/Cache 2 fusion domain. The Cache_3-Cache_2 domain likely originated as a fusion of sCache_3 and sCache_2 domains.	4.11547e-90
NZ_CP026568.1\|WP_054091569.1\|78452_79829_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.04539e-51
NZ_CP026568.1\|WP_054091698.1\|99149_100160_-\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0
NZ_CP026568.1\|WP_003401585.1\|88565_90575_+\|DNA-helicase-Rep	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP026568.1\|WP_054091568.1\|77162_78356_-\|DUF2914-domain-containing-protein	gnl\|CDD\|378567	pfam11141, DUF2914, Protein of unknown function (DUF2914). This bacterial family of proteins has no known function.	1.73791e-24
NZ_CP026568.1\|WP_003401602.1\|98233_99055_-\|sulfate-ABC-transporter-permease-subunit-CysT	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	5.04488e-148
NZ_CP026568.1\|WP_046235689.1\|93192_94077_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	2.58527e-72
NZ_CP026568.1\|WP_054091699.1\|96364_97345_-\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.80904e-170
NZ_CP026568.1\|WP_054091701.1\|94104_95358_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	2.39605e-27
NZ_CP026568.1\|WP_011266167.1\|85301_86684_+\|NorM-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|166843	PRK00187, PRK00187, NorM family multidrug efflux MATE transporter.	0
NZ_CP026568.1\|WP_003367675.1\|100312_100492_-\|sulfur-starvation-response-protein-OscA	gnl\|CDD\|227870	COG5583, COG5583, Uncharacterized small protein [Function unknown].	1.05163e-13
NZ_CP026568.1\|WP_054091570.1\|86696_88361_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.27311e-109

>NZ_CP026568.1|WP_003401587.1|90626_91196_+|xanthine-phosphoribosyltransferase
MEALHKKIREEGIVLSDQVLKVDAFLNHQIDPALMKEIGDEFARLFADAGVTKIVTIEASGIAPAVMAGLNMGVPVIFARKHQSLTLTENLLTASVYSFTKQVESTVAISPRHLSSDDNVLIIDDFLANGKASQALISIIKQAGATVAGLGIVIEKSFQGGRAELDAQGYRVESLARVESLAGGVVTFK
>NZ_CP026568.1|WP_003401585.1|88565_90575_+|DNA-helicase-Rep
MSRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREMKERVGTLLRGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQKEYSGDDGVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILLPVKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFEKQLWSEMGHGDEIRVIRCRNEDAEAERVAMEILTLHLRTDRPYSDFAILYRGNYQAKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIGSTTLEKLGNYATERKVSMYAATDEIGLGEHLDSRFTDRLQRFKRWMDGVRQQCAQNDPIAALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRAMLKR
>NZ_CP026568.1|WP_054091570.1|86696_88361_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MPTPVEPLRLLLLAHEPFWQALLSGCLTAPGSNVILLHGANWDVFSARYANERNTVLLTTPDLQPRTGACLLPTVVLLEAEPLVGPTGVSDWLVRDALTGDTLRRCLRYVHERSRLEDSLRRLVGQDPLTGIANRQGFQALLSARLSEGGSVALGHLDLDNFRRANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERITDVLAEPYWVDGESLLLGCSLGIAHSQAQPEADPLMWHAHIAMRQAKSMQGCTYHLFDERINRNARSLADLEGELRRALRRDELELYYQPRLCLDSGRVVGLEALVRWRHQERGLLPPSKFVPLAEQSGLIVPLGYWVIFRALRDMQALREQGFAPLHMAINLSFRQFQDSQLLPTLTRLIAEHDVDARWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSLPIALLKIDMTFVGQMELREENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSFGCNQVQGYLISRPLPVEELVTYLRSEVAHADTSRSG
>NZ_CP026568.1|WP_011266167.1|85301_86684_+|NorM-family-multidrug-efflux-MATE-transporter
MQHSALKELWIILRLAGPLIASQMAHMLMVFTDTVMMGKIGPEALAGGGLGAATYSFVSFFCVGVMAAVGTLVSIRHGAGDTEGATRLTQAGLWLAWGMALVAALLLWNLEPILLQFGQAEANVHMAAQFLITLPFALPGLLSFMALRGFTSALGRAGPVMTISLAGAAANFVLNYALIHQWLGLPNLGLMGIGLVTAIVTNCMALALALHIRLHPAYAAYPIRKGLSKLSRSHLGELWRLGLPIGGTYAVEVGLFTFAAFCMGAMGSTQMAAHQIALQTVSMAFMVPVGMSYAVTMRIGQHYGAGNLLMVRMAGRLGIGFGGCVMLMFGLLFWLAPHLVIGLFLDINDPAFAEIVVLATKLLAIAALFEFFDGTQTIAMGAIRGLKDARTTFLIGLGCYWLIAAPAAWLLGFSTDAGASGVWWGLALGLFCSAVALTYAFEWKTARLLRQDAAGLPVPG
>NZ_CP026568.1|WP_024641759.1|84222_85143_-|LysR-family-transcriptional-regulator
MPRSLPPLYALRAFEAAARHTSFTRAAEELSITQSAVSRHIRTLEEHFACRLFQRNGRNLQLTESARALLPGVRDGFLALERACSTLQTDEGILRMKAPSTLTMRWLLARLSRFRHLQVGNEVQLTSAWMEIDAVDFTQEPFDCAILLSQGHFPSDWEATLLFPELLIPVGAPTLLQDPPWDVERLAKAELLHPTPDRRDWRTWLNRMGLADQVSLKGGQVFDTLELGMIAAARGYGVSMGDLLMVAEDVAQARLSLPWRTAVFSGENYYLVWPRTRPGAERLRRLSDFLQAEVGAMKLPLVEVLY
>NZ_CP026568.1|WP_024640681.1|82059_84036_-|methyl-accepting-chemotaxis-protein
MSKPRTRIASQLGIALAVILAVVISGSTLFALRSLDASNLVIREEHMSSEARLLADQLNTFHSTLRDSTQRLSGLFEKRFAAGLSLQADKPVTVAGTSTPGLFLRDAALNNDFTEVDEFRSMTAGVATIFVRSGDDFIRISTSLSKQDGTRAIGTVLDRKGAAYERLIAGQSYVGKAVLFDRYYMTQYSPVRDSSGKIIAALFVGFDYTDAQKTQFDNLKSFRIGSTGSLALLDEKGTWLVPPAGVKSLEGAAKSVAELASKPGKAQFWDDGDDNYYSVGQPFAGGPWTVIASMPRKEISEVTWHVGTQLAIGSLLAMLIAVISAIWLLRSKLRPLSELVRQADALGAGDLSVRLNVTSNDEIGQLSGSFNKMSEALSSMVSHIRTAAQEVSTRANALSGLSGGAFEGMEQQSGEITSMAGAVEEFSATSMNIADNMGNTERLAQENAQQTRIGRTSMEEASSSLQQIATSLSSTAKVIDTLGQRSQEIGSIVGVITSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTREATDEISGMIASIQQETGNAISTMQQGNTLMQEGLSLNAKVASALAQIDEQSRSAGHQFAAITTATQEQSSTATMLSSNLQSIAMANSEQRQVMSNLAITAQELNGLATELRHEVDRFR
>NZ_CP026568.1|WP_011266164.1|79886_81539_-|Na/Pi-cotransporter-family-protein
MLTLLDLLSAVALLIWGTHIVRTGILRVYGTQLRRVLSQNMSKRPLAFIAGILVTALVQSSNATAMLVTSFVGQGLMTLTPALVIMLGADVGTALMSRVLTFDLSWLSPLLIFLGVVFFLSRKQTRAGQLGRVGIGLGLIVLALQLIVEAAAPITQAAGVKVLFASLTGDLLLDALVGAMFALISYSSLAAVLLTATLAGTEVIGLPVAIGLVIGANIGSGLLAFLSTSMQNVAGRQVALGSLLYKLFGLLLIFPVLDPLVAWIDTLGFSPQELVIGFHLLYNTVRCLIMLPTVAPMARLCSYLLPQQNEVGGLAKPRHLDLTALSTPSLALANAVRETLRMGDLIESMLASMLAVLRGTQTAVTQEVRRLNDDVEALYSAIKLYLAQMPREDLGEHDNRRWAEIIELTINLELASGLIERMLRKIQQQKTAHRRSFSEVGLEELADLQIQLQSNLRLGLSVFLSGDHESARQLLREKRQFRAEERRLAHAHVSRLRNKVVQSIETSSLHLELIADMKRLNSLFCSSAYVVLETADTGALSSEVEADRSL
>NZ_CP026568.1|WP_054091569.1|78452_79829_-|insulinase-family-protein
MRCLLFACLLLGSLPSFALDRLQVEGYLLPNGLQVLLKPGDDKGHVAIRLVVGIGFDDFPCQDKELPHLLEHLLFSGVDDSGEGGLEERMQALGGEWNAFTSNADTTFVIEAPARNQRKVLDLLLEIMTKTELSQARLDGVKRVVEREDGGHFSHLQRLLDRRDSGRSASSQLAVELGLKCAERPEVDGIKLEHIEDVFANWYAPNNMTLIVVGDLDKLLPAYLERTYGKLAPTDPIDHPPLAQGNGSAEPRRELERGGLGESAKLHLIYPEPQLDDQHDETWDLVKAYLDWTLYTELRLKHSLSYGPSAEREVFGDVGFLSLNADVERDDVDEAERDIRGLVERLQKEGMQPATFARLQQLAIDRQSWATQGNSALADYYWSALNDYENGRFEDPAKRIKAVKLETANQALRQLLAQPGYMRIEKPLFSYDGLYWLIGGVLGFIALLALWRWRARST
>NZ_CP026568.1|WP_054091568.1|77162_78356_-|DUF2914-domain-containing-protein
MLDVNRYVTPVLNLMQRYPGLIAAFGFVSGIASFILVDRQAGLATWIAVVMLISWLWLMVENTMVGLLNKALGREIPQGLLRYGTQMIHQESLFFVLPFFFITTTWNSGQAVFTAVLGAAGLISIIDPLYYKWLAPRRWLFMTLHTLTLFAALLTALPIILHLTTAESYKLALGVAMLLSAPSLMSNFPLNTWRSALAVISIILAIGAAGWLLRSWVPPATLWLTEVAVSPDFDNKNRTPGDSISLISAKQLRNGGLYAYTAINAPRGLDERIYHVWWHEGEEMDRIALDIHGGRKEGYRAWTRKQNFPEDVTGRWQVRVLTEDGQMIGVLRFVVTDDDQPAVKRPTGRIIKLKPGGDSAEEATPESAPATEPKQEKQEAAPAEPAPAESAPQAPAQ
>NZ_CP026568.1|WP_011266161.1|75916_77158_+|spore-maturation-protein
MLNGLWLGFFVVATISALVQWLVGGNAGIFAAMVESIFAMAKLSVEVMVLLFGTLTLWLGFLRIAEKAGIVDWLAKVLGPLFLRLMPEVPPGHPALGLITLNFAANALGLDNAATPIGLKAMRSLQELNPSKTAASNAQILFLVLNASSLTLLPVTIFMYRAQQGAPDPTLVFLPILLATSVSTIVGLLSVAFMQRLRLWDPVVLAYLIPGALLLGTFMAFLGTLSAAALAGLSSILGNLTLFGLIMMFLIIGTLRKVLVYEAFVEGAKEGFDVAKSLLPYLVAMLCAVGVLRASGALDFGLEGIRHLVQWLGLDTRFVDALPTAMVKPFSGSAARALLIETMQTQGVDSFAALAAATIQGSTETTFYVLAVYFGAVGIQRARHAVGCALLAEFSGVVAAIFVCYWFFGATAS
>NZ_CP026568.1|WP_054091702.1|91606_92926_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MNLIATDFPGSRMQSLVSYLEHDLRPTIVLDTDYNIIAANTAYQRQFGVEGTPHVGEKCYRVSHQFAVPCDQAGEHCPMRKAHETRLPERLLHIHHTPRGPEHVDVELRPILDDQGELIAYVERLSSVAVASVQPQQHGLVGRSAAFKEVLGALQRAAPAQIPVLLQGESGTGKELFARALHASSARSAGPLVVVDCTGLTETLLESELFGYEKGAFTGALQRKTGLAEAAHGGTLFLDEIGEVPLAMQVKLLRLIESGSFRPVGSLRTVHSDFRLVVATHKPLREMVADGSFRQDLFYRISAFPIRLPALRERSDDLPLLIDSLLQRIAPGAAPRVDAEAMKLLSLYRYPGNIRELRNILERARLFTDDGVIRVQDLPAEVRGQGEAGGVTYRQQDDGLEKLAHALRVFNGSRSELARELGLSERTLYRRLRALGIPR
>NZ_CP026568.1|WP_046235689.1|93192_94077_+|MBL-fold-metallo-hydrolase
MIIGEKLHVEALFDTHTWTISYLVMDLHSKQCALIDSVLDYDPKSGRTRTESADRMIERAQALGASVQWIFETHVHADHLSAAPYLKQRLGGQIVIGSHITAVQETFGTLFNAPSDFARNGSQFDVLLEDNASFALGTLEVKAMHTPGHTPACMSYLVQVGDATVAFVGDTLFMPDYGTARCDFPGADARTLYRSIKKLLALPPQTLLFMCHDYLPNGRELKYMTTVAEQRASNIHVHDGVDEDAFVGMREARDATLDMPVLMLPAVQVNMRCGHFPEPEDNGVVYLKIPLNAL
>NZ_CP026568.1|WP_054091701.1|94104_95358_+|NAD(P)/FAD-dependent-oxidoreductase
MNASTTTCQILIVGGGAAGIATAASLLARDATLQITLVDPADTHYYQPGWTMVGAGIFTPQSTARSMASLIPKGVQWIKAAVSTFEPQHNTLTLADGRVLGYQQLVVCPGLKLDWSAIDGLVDTLGANGVTSNYRYDLAPYTWKLVQNLQQGRALFTQPPMPIKCAGAPQKAMYLSCDHWLKSGRLAQINTQFYNAGGVLFGVADYVPALMKYVERYAIDLKFSHRLVAVDGPGKRATFIRTQADGSSETVEQSFEMLHVVPPQIAPDFIRSSPLADAAGWVDVDPATLKHRQFANVHGLGDATNTSNAKTAAAARKQAPVVANNVLVALGRRDGSAVYDGYGSCPLTVEKGRIVLAEFTYGGKVAPSFPRWLLDGRQPTRLAWWLKARVLPALYWHGMLKGREWLAKPQKADTRHG
>NZ_CP026568.1|WP_054091700.1|95350_96163_+|sulfite-exporter-TauE/SafE-family-protein
MDEHQLLGVGLGTVIGMVLALTGAGGGILAVPLLVFGLGLSIVEAAPVGLLAVGLAAGIGAVLGLRQGIVRYRAAGYIASIGVLMAPLGLWLAHRLPNTPLALVFSAVLLYACGRMFIRASRELRHGKPAPRAEVLPCVLNPLQGRLRWTMPCLRALTLTGVGSGLLSGLLGVGGGFVIIPALTRYSDLDMKSVVATSLAVIALVSTGSVITASLSGVMHWAVGAPFALGAVIGLIIGRQVARYLAGPRLQQLFAVCGIVAAFMLALSVR
>NZ_CP026568.1|WP_154583773.1|96191_96344_+|hypothetical-protein
MGTIRLLPGGRRSELVREGVGSIAENASTETPSSRAMRIAAPVAPHKSCV
>NZ_CP026568.1|WP_054091699.1|96364_97345_-|sulfate-ABC-transporter-ATP-binding-protein
MSIEVRNVSKNFNAFKALNNISLDIQSGELMALLGPSGCGKTTLLRIIAGLETPDDGSIVFHGEDVSGHDVRDRNVGFVFQHYALFRHMTVFDNVAFGLRMKPKRERPNETRIAEKVHELLNMVQLDWLADRYPEQLSGGQRQRIALARALAVEPKVLLLDEPFGALDAKVRKELRRWLARLHEDINLTSVFVTHDQEEAMEVADRIVVMNKGVIEQIGSPGEVYENPSNDFVYHFLGDSNCLSLGAEGHLLFRPHEVSLSRQEIEDHHAAEVRDIRPLGATTRVTLKVEGQDELIEAEVVKDHDSLVGLAKGETLFFKPKVWQKL
>NZ_CP026568.1|WP_002551394.1|97347_98220_-|sulfate-ABC-transporter-permease-subunit-CysW
MSYSSVSAAASANAARRGSAVSRRILIGLCWLVFVLFLGLPLFIVVSQGLKNGLGAFFTAILEPDALSALKLTVIAVLISVPLNLVFGVSAAWCVSKYSFRGKSILVTLIDLPFSVSPVIAGLVYVLMFGAQGLFGPWLQDHDIQIVFALPGIVLATIFVTVPFVARELIPLMQEQGTQEEEAARLLGANGWQMFWHVTVPNIKWGLIYGVVLCTARAMGEFGAVSVVSGHIRGVTNTLPLHVEILYNEYNHVAAFAVASLLLILALFILLLKQWSESRINRLRHNAAEE
>NZ_CP026568.1|WP_003401602.1|98233_99055_-|sulfate-ABC-transporter-permease-subunit-CysT
MSRRISPVIPGFGLTLGYTLVYLSLIVLIPLAAMFVHAAQLTWDQFWTIITAPRVIAALKLSFGTAFYAALINGVIGTLLAWVLVRYTFPGRKVIDAMIDLPFALPTAVAGIALTALYAPNGWVGQFAADLGFKIAYTPLGITLALTFVTLPFVVRTVQPVLADIPREVEEAAACLGARPLQVFRHILVPALLPAWLTGFALAFARGVGEYGSVIFIAGNMPMKTEILPLLIMVKLDQYDYTGATAIGVMMLVVSFILLLLINLLQRRIETPS
>NZ_CP026568.1|WP_054091698.1|99149_100160_-|sulfate-ABC-transporter-substrate-binding-protein
MSIRRFALAALASAVFAGSAAAKDYELLNVSYDPTRELYQDYNAEFVNFWKQSHPDDKVEIKQSHGGSGKQARGVIDGLRADVVTLALAGDIDEIARLGKTLPENWQTRLPDASTPYTSTIVFLVRKGNPKGIKDWGDLTKEGVSVITPNPKTSGGARWNFLAAWAYGLKAGGGDEAKAKEYVQTLFKHVPILDTGARGSTITFVNNGQGDVLLAWENEAFLALKEDGGKDKFDIVVPSLSILAEPPVAVVDKNAERKGNTEIATEYLKHLYSKEGQEIAAKNFYRPRDAEVAAKYEKQFPKLDLVTIDKDFGGWKTAQPKFFNDGGVFDQIYQAQ
>NZ_CP026568.1|WP_003367675.1|100312_100492_-|sulfur-starvation-response-protein-OscA
MSASLRSVDGQDEAAILREIQSALRDLRFGAVEITVHNAQVVQIERKEKFRLQNPAKQN

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Crispr_ID: NZ_CP026568_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026568_2

1115009-1115405

Orphan

Consensus_repeat	Method
GAGGACGCGGAGCGTCCGGAAAGGCATGCGACGCGGAGCGTCGCACGATAGTGGGGT	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP026568_2

>merge|NZ_CP026568|2|1115009-1115405|PILER-CR
GAGGACGCGGAGCGTCCGGAACAGCATGCGACGCGGAGCGTCGCACGATAGTTGCGATGATCGTTCCGCACGCTCCAGCGTGGGAATTCAGTTCGCGACGCTCTGCGTCGTCACGAGGACGCGGAGCGTCCGGAACGGCATGCGACGCGGAGCGTCGCACGATAGTGGGCTGATCGTTCCGCACGCTCCAGCGTGGGCATGCAGTTCACGACGCTCTGCGTCGTCACGAGGACGCGGAGCGTCCGGAAAGGCATGCGACGCGGAGCGTCGCACGATAGTGGGGTTATCGTTCCGCACGCTCCAGCGTGGGAATGCAGTTCTCGACGCTCTGCGTCGTCAAGAGGACGCGGAGCGTCCGGAAAGGCATGCGACGCGGAGCGTCGCACGATAGTGGGGT

>NZ_CP026568|2|1|1115009-1115405|PILER-CR
GAGGACGCGGAGCGTCCGGAACAGCATGCGACGCGGAGCGTCGCACGATAGTTGCGA	TGATCGTTCCGCACGCTCCAGCGTGGGAATTCAGTTCGCGACGCTCTGCGTCGTCACGAGG
ACGCGGAGCGTCCGGAACGGCATGCGACGCGGAGCGTCGCACGATAGTGGGCTGATC	GTTCCGCACGCTCCAGCGTGGGCATGCAGTTCACGACGCTCTGCGTCGTCACGAGG
ACGCGGAGCGTCCGGAAAGGCATGCGACGCGGAGCGTCGCACGATAGTGGGGTTATC	GTTCCGCACGCTCCAGCGTGGGAATGCAGTTCTCGACGCTCTGCGTCGTCAAGAGG
ACGCGGAGCGTCCGGAAAGGCATGCGACGCGGAGCGTCGCACGATAGTGGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026568.1\|WP_011266759.1\|1126676_1127456_-\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP026568.1\|WP_054091883.1\|1113963_1114962_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP026568.1\|WP_024652678.1\|1126113_1126650_-\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP026568.1\|WP_004406900.1\|1108118_1108352_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_004406899.1\|1108580_1109162_+\|lipoprotein	unknown	unknown	gnl\|CDD\|367729
NZ_CP026568.1\|WP_003408714.1\|1127497_1127881_-\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP026568.1\|WP_003421706.1\|1109703_1110870_-\|acyltransferase	unknown	unknown	gnl\|CDD\|153255
NZ_CP026568.1\|WP_004406890.1\|1118381_1120319_+\|DUF1302-domain-containing-protein	unknown	unknown	gnl\|CDD\|377751
NZ_CP026568.1\|WP_011266757.1\|1124675_1125857_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP026568.1\|WP_004406892.1\|1115586_1116219_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|273358
NZ_CP026568.1\|WP_003318203.1\|1111155_1111416_+\|DUF2007-domain-containing-protein	unknown	unknown	gnl\|CDD\|378182
NZ_CP026568.1\|WP_024641248.1\|1113132_1113717_-\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP026568.1\|WP_011266752.1\|1112229_1113078_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320690
NZ_CP026568.1\|WP_054092402.1\|1116389_1118072_+\|fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235730
NZ_CP026568.1\|WP_003346138.1\|1109237_1109444_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_011266751.1\|1111445_1112075_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP026568.1\|WP_080377209.1\|1121888_1124651_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225461
NZ_CP026568.1\|WP_080267724.1\|1120323_1121712_+\|DUF1329-domain-containing-protein	unknown	unknown	gnl\|CDD\|377764
NZ_CP026568.1\|WP_004406898.1\|1110973_1111156_+\|CPXCG-motif-containing-cysteine-rich-protein	unknown	unknown	gnl\|CDD\|379524
NZ_CP026568.1\|WP_004406882.1\|1127891_1128629_-\|pyrimidine-utilization-protein-B	unknown	unknown	gnl\|CDD\|163356

Protein	Function_ID	Function_description	E-value
NZ_CP026568.1\|WP_011266759.1\|1126676_1127456_-\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	3.94916e-146
NZ_CP026568.1\|WP_054091883.1\|1113963_1114962_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	2.43075e-87
NZ_CP026568.1\|WP_024652678.1\|1126113_1126650_-\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.45944e-100
NZ_CP026568.1\|WP_004406899.1\|1108580_1109162_+\|lipoprotein	gnl\|CDD\|367729	pfam03923, Lipoprotein_16, Uncharacterized lipoprotein. The function of this presumed lipoprotein is unknown. The family includes E. coli YajG.	8.12341e-07
NZ_CP026568.1\|WP_003408714.1\|1127497_1127881_-\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	1.51317e-86
NZ_CP026568.1\|WP_003421706.1\|1109703_1110870_-\|acyltransferase	gnl\|CDD\|153255	cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.	5.35314e-07
NZ_CP026568.1\|WP_004406890.1\|1118381_1120319_+\|DUF1302-domain-containing-protein	gnl\|CDD\|377751	pfam06980, DUF1302, Protein of unknown function (DUF1302). This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas.	0
NZ_CP026568.1\|WP_011266757.1\|1124675_1125857_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.17771e-90
NZ_CP026568.1\|WP_054092402.1\|1116389_1118072_+\|fatty-acid--CoA-ligase	gnl\|CDD\|235730	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP026568.1\|WP_003318203.1\|1111155_1111416_+\|DUF2007-domain-containing-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	1.13364e-06
NZ_CP026568.1\|WP_024641248.1\|1113132_1113717_-\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	4.23435e-60
NZ_CP026568.1\|WP_011266752.1\|1112229_1113078_+\|M48-family-metallopeptidase	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	9.84023e-82
NZ_CP026568.1\|WP_004406892.1\|1115586_1116219_+\|LysE-family-transporter	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	3.3564e-45
NZ_CP026568.1\|WP_011266751.1\|1111445_1112075_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	1.1172e-57
NZ_CP026568.1\|WP_080377209.1\|1121888_1124651_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225461	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription].	0
NZ_CP026568.1\|WP_080267724.1\|1120323_1121712_+\|DUF1329-domain-containing-protein	gnl\|CDD\|377764	pfam07044, DUF1329, Protein of unknown function (DUF1329). This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica.	0
NZ_CP026568.1\|WP_004406898.1\|1110973_1111156_+\|CPXCG-motif-containing-cysteine-rich-protein	gnl\|CDD\|379524	pfam14255, Cys_rich_CPXG, Cysteine-rich CPXCG. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There are 5 conserved cysteines which occur in a CPXCG motif and a DCXXCCXP motif.	1.02451e-19
NZ_CP026568.1\|WP_004406882.1\|1127891_1128629_-\|pyrimidine-utilization-protein-B	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	8.65184e-155

>NZ_CP026568.1|WP_054091883.1|1113963_1114962_-|class-I-SAM-dependent-methyltransferase
MDPRSEVLLRQAELFQGSLLLVGLPADDLLGKLPDARGWCWHAGDQAALDARFEGRVDFGVEAPQTGFEAAVLFLPKARDLTDYLLNALASRLAGRELFLVGEKRGGIEAAAKQLSPFGRARKLDSARHCQLWQVTVEHAPQAVSLESLARPYQIELQDGPLTVVSLPGVFSHGRLDRGSALLLENIDKLPSGNLLDFGCGAGVLGAAIKRRYPHNEVIMLDVDAFATASSRLTLAANGLQAQVLTGDGIDAAPMGLNTILSNPPFHVGVHTDYMATENLLRKARQHLKSGGELRLVANNFLRYQPLIEEHVGQCEVRAQGNGFKIYSAKRP
>NZ_CP026568.1|WP_024641248.1|1113132_1113717_-|TMEM165/GDT1-family-protein
MLESFLIPTAVVALAEIGDKTQLLALVLAARFRKPWPIIAGIVAATLANHAAAGAVGAWFSSYLSDAVLHWILAASFTATALWTLVPDKMDDDEASTARKFGPFMTTLITFFIAEIGDKTQIATVMLAAQYSYLWLVILGTTVGMLLANVPVVLAGNFAAEKLPLTLIRRLAACAFFVLALVAVYKAMQVSGWV
>NZ_CP026568.1|WP_011266752.1|1112229_1113078_+|M48-family-metallopeptidase
MTVSYTRRYTMRPSFAFCALSAALLLGGCQAVNTTSGDSVGVERKQYMFSMLSTDEVNKMYAQSYQQTVGEATSKGVLDTTSANARRVHAIADRLIAQAPKLRPDSAQWQWEVNLIKSDELNANCGPGGKIIVYSGLIDTLKLTDDEIAAVMGHEIAHALREHGREAMSKAYGVSMAKQGAGALLGLGQDSLALADTVVNYSLTLPNSRSNENEADLLGLELAARAGYNPNAAITLWQKMTQNSGGSQPEFMSTHPASESRIASLQAAIPKVMPLYQKAAKS
>NZ_CP026568.1|WP_011266751.1|1111445_1112075_+|SOS-response-associated-peptidase
MCGRYALFRWTPAFAALPGFPADQQAQWNISPADWVLIMRAADNAEGIELVRARWGLTPAWLTDLSKTPAHARAETVAEQPMFRDAFTHRRCLLPANGFYEWRGTMRKRPFWLTPGEGAALFFAAIWEAYPVQGHTYLSVAVVTQAAATQRRPLILDAKGQKDWLAADTPLPTLQALLAAPQTALRERPLANLVNDPKLNAPECLTPLS
>NZ_CP026568.1|WP_003318203.1|1111155_1111416_+|DUF2007-domain-containing-protein
MQKIYEPENLMEAELLLAMLASEGINAHLAGRDLLGAMGELPGLGLLALKVEDAQVARARALITAYNSASPLSGDEPDDFPDVLVC
>NZ_CP026568.1|WP_004406898.1|1110973_1111156_+|CPXCG-motif-containing-cysteine-rich-protein
MQELQSYDCPYCGEPVEAVLDISGGDQQYIEDCPVCCRPIVFDLQTDGEDWNLDVRSENE
>NZ_CP026568.1|WP_003421706.1|1109703_1110870_-|acyltransferase
MMGEFDAIRPYNDAEVPAVLARLLSDKAFLAILTRFRFPRLAGAFGWLLQPTLARKLRREFAGIDSVATLQDKVEYYVDHTIERATDGVTYTGVEQLKSGCAYLFLANHRDIVMDPAFVNYAVYHAGLPTPRIAIGDNLLQKPFVSDLMRLNKSFIVHRSITGRREKMAAYQLLSAYINHSITQDCQSIWIAQAEGRAKDGDDRTESAILKMFHMSRKDEPFGDVIRSLNLIPVSISYEYDPCDSAKARELYIRATTGAYTKTPGEDDVSIALGITGYKGRVHVNFAPPITEHFEDTKQLAIEMDRQILGGYRLFPVHYLAYAQWSDADPALEVPKAEALFPADELERAREEWESRLAGTPIEHRPYMIQQYATPVRNQYRVKAGLAL
>NZ_CP026568.1|WP_003346138.1|1109237_1109444_-|hypothetical-protein
MLHAKNQDRLYLIAPSDEQQELIDGLAFNVQDRHWLVYCALGGHVHHDLPDLDQDTGLSFLDFYQQAA
>NZ_CP026568.1|WP_004406899.1|1108580_1109162_+|lipoprotein
MLRRILFGLLAVSSLTLVGCAHSPQQLSPTPKLNAQLAAVGRGQPVVVRVVDGRPGPTLGTRGGMYPETSAISVNGADIVPKLQAQAEAAVRLLGFTPTQSGNAPQLTVTLADLKYQSPKEGLYVTEATISSTFRADVRNNGRTYSGRYAASLDQRFGMAPNQETNTKLVSDVLSDALTRVFQDPTIGSTLSQ
>NZ_CP026568.1|WP_004406900.1|1108118_1108352_-|hypothetical-protein
MNLFRSLFTARPQHRHYARIDQAGVCRAFKHCAQRPTGVEWVEVTEQRLSWLNQPLPASARVTQRSERSPRGQLLTA
>NZ_CP026568.1|WP_004406892.1|1115586_1116219_+|LysE-family-transporter
MYWAEFLTVALIHLLAVASPGPDFAVVVRESVTHGRKAGTWAALGVGSAIFLHVGYSLLGIGIIVSQSIVLFNALKWAAAAYLLYIGIKALRAKPAAATGDTAIKATPGERTARGAYISGFVTNGLNPKATLFFLSLFTVVINPHTPLLVQGGYGVYLAVATAAWFCLVARLFSQARVRAGFARMGHWFDRAMGGVLIALGIKLALTEVR
>NZ_CP026568.1|WP_054092402.1|1116389_1118072_+|fatty-acid--CoA-ligase
MLQTRVLPPADGAYQCPLLIKRLLLSGGRYEKTREIIYRDSVRYTYATLNERICRLANVLTAAGVKAGDTVAVMDWDSHRYLECMFAIPMIGAVIHTVNVRLSPEQIAYTINHADDRLVLVNSEFTGLYQAMSGHLSTVEKTLLLTDLPDKTAELPNLVGEYETLLAAASPEYVFEDFDENSVATTFYTTGTTGNPKGVYFTHRQLVLHTMGVATIMGCIDSTRLLGTDDVYMPITPMFHVHAWGIPYAATMLGLKQVYPGRYDPELLVQLWRRENVTFSHCVPTILQMLLNAKSAQNVDFGGWKIIIGGSSLTRSLYQAAKSRGIQLTAAYGMSETGPLISVAHINEELKAGSEDERITYRIKAGVPGMLVEAAIIDQQGNFLPADGETQGELVLRAPWLTGSYFREPEKGAELWAGGWLHTGDVATLDGMGFIDIRDRIKDVIKTGGEWVSSLELEDLCSRHPAVREVAVVGIADPQWGERPFALLVIRDGHQLDAKGLKEHLKPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKKRMRLDIVEWQSSNSAFLSTL
>NZ_CP026568.1|WP_004406890.1|1118381_1120319_+|DUF1302-domain-containing-protein
MTSTSPFWRRARLPLAVSLASSLAGPAFAVTFNVGEIEGSFDSSLSVGASWSTANPNKNLIGANNGGRGLSQTSDDGHLNFKRGETFSKIFKGIHDLELKYGDTGVFLRGKYWYDFELKDENREFKDISDSGRKEGAKSSGFQLLDAFVYHNYSIADQPGAVRFGKQVISWGESTFIQGGINSVNPVDVSAFRRPGSEIKEGLIPVNMFYLSQSLTDNLSAEGFYQLEWDQTVVDNCGTFFSQPDVIADGCNNNLAVLRSRSGLNSSLTAAGLPAGARGAVFNSLSQQGVVFGNPDEGAVVRRGPDRDARDSGQFGFALRYNFEPLDTEFGAYMMNYHSRAPIFSGRGGSAASFSPQGLVGSLVRNGIPASTAAALAPSLLPVVVAGNSSYYVEYPEDIRLYGLSFSTTLPTGTAWSGEISYRPNAPIQVNTTDILYSGISPLNPNVSLLSGQPNTDQAGYRRKEITQMQTTFTQFFDQVMGAERLTVVGEVGWTHVGGLESTSKIRYGRDPVYGPGPLPGGQCATLNAGTLTGAEQNNLTRYCEDDGFTTANSWGYRARAIWDYNSVFAGVNLKPSVAWSHDVKGYSPGPGGNFEEGRKAVSLGLDAEYQNTYTANLSYTNFFDGKYTTVDDRDFVALSFGMNF
>NZ_CP026568.1|WP_080267724.1|1120323_1121712_+|DUF1329-domain-containing-protein
MVFRMTMNMKITKNLLQVGVLGMSLLATGVMAAVSESEAAKLGTSLTPMGAEKAGNAANTIPAWSPMPKNAGAVDSKGFLANPYASEKPLFIITAANVEQYKDKLAPGQYAMFKRYPDSYRIPVYPTHRGATVPDDVFAAIKKNATTSKLVGGGSGLENFDTAIPFPIPASGVEVIWNHITRYRGGSVKRLVTQATPQPNGSYSLVYFSDQFVFRDKMRDFDPKNPGNVLFYFKQEVTAPARLAGGVLLVHETLDQVAEPRSAWLYNAGQRRVRRAPQVSYDGPGTASDGLRTSDNLDMYNGAPDRYDWKLIGKQEMYIAANSHKLDDPTLKYADIIKAGHINQDLTRYELRRVWHVTATLKEGQRHIYAKRDFFIDEDTWQAAVIDHYDGRGQLWRVAEAHSENYYDKQVPWYAVETLYDLQSGRYVALGMKNEEKKAYEFGFTAGTSDFTPNALRQEGVR
>NZ_CP026568.1|WP_080377209.1|1121888_1124651_+|helix-turn-helix-transcriptional-regulator
MPKQRFLHEPAMTHLSRMQGFADGAIPALEGRFFRPPLPEGYVPRARLCQRLDAGLGGRLLLICAPAGFGKSSLAVEFCQGLPDNWQNVWLGLSARDSDPGRFLERLLASLQQFFPQLGTQAMALLKMRQRHQPFAFEEWLDGLLDELAMHLMLSKPLLLVLDDYHLAQGPVLDRCLQFLLNHLPAGLVVMVTSRQRPDWHLARLRLTRQLLEINEQDLRLTHAESMAVLERHSGSLDSEALQSLIQRSEGWVAGLRFWLLAASEAGDESALPQTLRGSEVLIREYLLEEVIDCLPADVQAFLYDTACLERFCVELCDAARDGHDSAGMLGYLQAHQVFLVPLDEQGHWFRYHHLFSDLLRARQAAGAPPTRLHLNACRWFSAQGQLDEAVEQALRAGHLDVAANLVQNLSEEQLLAEQNVGMLLRWKMDLPDDLLTSTPRLIVLYAWALGLACQLDAAEELANQLSRFLPAPSATAQKSMLAQWLALSGIIARGRGDSEKTQHYCTEALLSLPEKRYGQRLVCLSTLANLAVANGDLWRARVLNRDALELAQRVANPLFEALAHYDRARVLQARGEILRALEEVRQGQQRLKDLSTVRLYAVRARLTLYEGYLLTLRLQVDEGRVLLLAGLAEARACRDISVLIGHCVIATMEGCTGRFAEAFAELAEAERLMHIWDVPPIYYLAMITLVKCELWLLQGRMDLAEAWLLRLTQTYNGGLGAAAPECHPQLPQYIELQRAVLERQQGDGVACEQRLQALERRAQEVGAKLLGLIAMTQQIGLLLSQARRDEARALLLRSLPAASGGALMPFKALLGEHPEWLHEQLVQLPPCRVQAALLEKLPACCTPSPEAAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGLLG
>NZ_CP026568.1|WP_011266757.1|1124675_1125857_-|HD-GYP-domain-containing-protein
MLKKIPVADLALGMYIHKICRRWTNDPFWIGLVEVMLDDVEVLERIQQSGTKEVWIETGKSRVLAPRPSTPSASDDTTPASLEKEMLRARLICGRARDAVMCMFTEARMGRAMDVDNVQLLVEEISNSILRHPHALISLSRLKTSDEYTYMHSVAVCALMVALAKRMGMPDDQVREAGVAGLMHDVGKMMIAPAVLNKPGRLTRDEFEIMKAHPELGVKILMDTQPVAASVIDVCLHHHEKVDGSGYPHGLKGDQISIFARMGAVCDVYDAITSDRPYKKGWGVAHSIREMASWQGHFDDVVFQSFVKTVGIYPIGTLVRLESGRLGVVVEQGQASLLKPKVKVFMSARTGKTFAAQVIDLDCPSDPDRIARIEKTTDWGLEEVDTLWAGSPA
>NZ_CP026568.1|WP_024652678.1|1126113_1126650_-|pyrimidine-utilization-flavin-reductase-protein-F
MPTSSATPAILPIAAVSQLAFRDAMSGLAAAVNLITTDGPGGRAGFTATAVCSVTDQPPTLLVCINRSASVYDAFIENGTLCVNTLGNGQQDLSNLFGGKSSQQERFACGQWEAGVTGAPVLDSAKLALDCKVSQSVSVGTHDILFCEVVDIRHQSGADALVYFGRRYHHLPSETPAA
>NZ_CP026568.1|WP_011266759.1|1126676_1127456_-|pyrimidine-utilization-protein-D
MFHEFHACQHADAPTLVLSSGLGGSGRYWADDLTLLTRDYHVLVYDHAGTGRSPAVLPADYSIRHMAIELLALLDSLDIQRCHFMGHALGGLVGLELALLRPELLHSQVLINAWSSPNPHSARCFSVRKKLLLNSGPEAYVQAQALFLYPADWIAANGPRLADDEAHALAHFPDTDNLLRRIHALETFDVSAELSRIHTPTLLIANRDDMLVPWQQSRHLANALPNATLVLLEYGGHASNITDPLPFQRALRAFLSTQP
>NZ_CP026568.1|WP_003408714.1|1127497_1127881_-|pyrimidine-utilization-protein-C
MTKKAIIPAGTSKPIAPFVPGSMADGVLYVSGTLPFDKDNNVVHVGDATAQTRHVLEAIKSVVETAGGTLDDVTFNMIMIRDWADYAKVNEVYAEYFAGEKPARYCIQCGLVKPEALIEIASIAHIG
>NZ_CP026568.1|WP_004406882.1|1127891_1128629_-|pyrimidine-utilization-protein-B
MTTPTTVAGVDLPDLQPARELPARPEPLRMKPGETALVVVDMQNAYASLGGYLDLAGFDVSSTGPVIANINKACTAARAAGIPVIFFQNGWDPAYVEAGGPGSPNWHKSNALKTMRKRPELEGQLLAKGGWDYQLVDELTPQPGDIVVPKIRYSGFFNSSFDSVLRSRGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLADATHQAGPEFAQQAALFNIETFFGWVSSVDDFCTTFSPVGQPS

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Crispr_ID: NZ_CP026568_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026568_3

1264103-1264214

Orphan

Consensus_repeat	Method
TGTGACGCAGAGCGTCACGAACTGCATGCCGACGCGGAGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026568_3

>merge|NZ_CP026568|3|1264103-1264214|CRISPRCasFinder
TGTGACGCAGAGCGTCACGAACTGCATGCCGACGCGGAGCGTCGGCACGATAGTCAAAGAAAAACCGCCGTGTGACGCAGAGCATCACGAACTGCATGCCGACGCGGAGCGT

>NZ_CP026568|3|2|1264103-1264214|CRISPRCasFinder
TGTGACGCAGAGCGTCACGAACTGCATGCCGACGCGGAGCGT	CGGCACGATAGTCAAAGAAAAACCGCCG
TGTGACGCAGAGCATCACGAACTGCATGCCGACGCGGAGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026568.1\|WP_054091520.1\|1273118_1276223_-\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NZ_CP026568.1\|WP_024652784.1\|1260454_1261624_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
NZ_CP026568.1\|WP_054091518.1\|1258705_1259614_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP026568.1\|WP_011266836.1\|1265324_1266794_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NZ_CP026568.1\|WP_024651215.1\|1268790_1269270_+\|PA2169-family-four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|131337
NZ_CP026568.1\|WP_011266838.1\|1267530_1268205_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP026568.1\|WP_004406653.1\|1259606_1260452_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP026568.1\|WP_054091519.1\|1263220_1264096_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP026568.1\|WP_024660810.1\|1271076_1272441_-\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP026568.1\|WP_002552324.1\|1264239_1265106_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183082
NZ_CP026568.1\|WP_054091516.1\|1254939_1255677_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP026568.1\|WP_054091531.1\|1255738_1257145_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP026568.1\|WP_054091515.1\|1253923_1254889_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP026568.1\|WP_011266835.1\|1261749_1263111_+\|porin	unknown	unknown	gnl\|CDD\|226185
NZ_CP026568.1\|WP_024651214.1\|1266780_1267494_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|238694
NZ_CP026568.1\|WP_004406640.1\|1269340_1270870_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP026568.1\|WP_004406660.1\|1252100_1253927_+\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NZ_CP026568.1\|WP_003341842.1\|1268332_1268572_-\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|378970
NZ_CP026568.1\|WP_054091517.1\|1257314_1258601_+\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP026568.1\|WP_003314062.1\|1272430_1273108_-\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454

Protein	Function_ID	Function_description	E-value
NZ_CP026568.1\|WP_054091520.1\|1273118_1276223_-\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP026568.1\|WP_024652784.1\|1260454_1261624_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	1.67014e-177
NZ_CP026568.1\|WP_054091518.1\|1258705_1259614_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.37896e-74
NZ_CP026568.1\|WP_011266836.1\|1265324_1266794_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NZ_CP026568.1\|WP_024651215.1\|1268790_1269270_+\|PA2169-family-four-helix-bundle-protein	gnl\|CDD\|131337	TIGR02284, conserved_hypothetical_protein, conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.	2.29913e-43
NZ_CP026568.1\|WP_011266838.1\|1267530_1268205_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	1.0834e-118
NZ_CP026568.1\|WP_004406653.1\|1259606_1260452_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	8.74837e-76
NZ_CP026568.1\|WP_054091519.1\|1263220_1264096_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	1.53798e-81
NZ_CP026568.1\|WP_024660810.1\|1271076_1272441_-\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	2.71609e-133
NZ_CP026568.1\|WP_002552324.1\|1264239_1265106_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|183082	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional.	0
NZ_CP026568.1\|WP_054091516.1\|1254939_1255677_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.84108e-82
NZ_CP026568.1\|WP_054091531.1\|1255738_1257145_+\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	2.68712e-48
NZ_CP026568.1\|WP_054091515.1\|1253923_1254889_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.73765e-167
NZ_CP026568.1\|WP_011266835.1\|1261749_1263111_+\|porin	gnl\|CDD\|226185	COG3659, OprB, Carbohydrate-selective porin [Cell envelope biogenesis, outer membrane].	7.09117e-171
NZ_CP026568.1\|WP_024651214.1\|1266780_1267494_+\|6-phosphogluconolactonase	gnl\|CDD\|238694	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.	2.0537e-75
NZ_CP026568.1\|WP_004406640.1\|1269340_1270870_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.61163e-62
NZ_CP026568.1\|WP_004406660.1\|1252100_1253927_+\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NZ_CP026568.1\|WP_003341842.1\|1268332_1268572_-\|DUF3820-family-protein	gnl\|CDD\|378970	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor. QSregVF_b is a family of short Pseudomonas proteins that are potential virulence factors. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd, from pfam13652. It is predicted that these two adjacent proteins form a single transcriptional unit based on the prediction that together they interact with their adjacent protein PotD, which is the putrescine-binding periplasmic protein in the polyamine uptake system comprising PotABCD. These two adjacent proteins are predicted to be quroum-sensing-regulated virulence factors.	2.53707e-36
NZ_CP026568.1\|WP_054091517.1\|1257314_1258601_+\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	4.32851e-35
NZ_CP026568.1\|WP_003314062.1\|1272430_1273108_-\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	2.56032e-96

>NZ_CP026568.1|WP_054091519.1|1263220_1264096_+|D-hexose-6-phosphate-mutarotase
MTTHDAQLPEHPLQRFFRSRRARPTFEWERHQLRDVLVIDHPQCQAVFSRQGAQLLHFQPQGQKPWLWCAAQWPQVGAIRGGVPVCWPWYGRHPGESGWPAHGWGRLLDWKLIDSSESEEGVSLHWRLQLWDWQVDLHAELGQSMELRLSTCHEDSEPCHFSHALHVYWRIGDVAEVALEGLDGAQGYDQLSRQACQQQGELRVAGACQRVFEHAGAVQLQDPIWQRRLNIDTGDSTNTVVWHPGSRPLLGVCGSETTGFVRVEAASGSGDTFSLRPGEHVQLKLQASLAG
>NZ_CP026568.1|WP_011266835.1|1261749_1263111_+|porin
MKKINKGKSLSRLQLVCKLSALGAMGLAGSVHAAEPFAADSPWMTGDWGGKRTELLDKGYDFSLEYVSEMASNLKGGYNDDTTGRYSDQFALGMKVDLQKVLGWQDAEFKLAITERSGRNISNDRIGDPRAGTLSSSQEVWGRGQTWRLTQMWIKQKYFDGALDVKAGRFGPGEDFNSFPCDFQNLSFCGSQVGNYVNTWYNWPISQWALRIKYNITPEVYAQVGVYEQNPSNLETGNGFKLSGSGTEGMILPVELVWTPSFNSLPGEYRVGYYKSTPNANDVYEDVNGQPQALTGAAFKSHSSKHGWWVVAQQQLTTHDGDASRGLSIFANATVHDKATNFVDNYQQIGFTYKGPFNSRPKDDIGIGFARIHVNDDVQDRVRLANQISGINDYDNPGFLPVQSTEYNSEIYYGFHVTNWLTVRPNLQYIKHPGGVDQVDDALVAGIKIQSKF
>NZ_CP026568.1|WP_024652784.1|1260454_1261624_+|ABC-transporter-ATP-binding-protein
MATLELRNVNKTYGSNLPDTLKNIDLSIKDGEFLILVGPSGCGKSTLMNCIAGLESISGGEILIDGQDVSGTSPKDRDIAMVFQSYALYPTMSVRENIAFGLKIRKMPQADIDAEVARVAKLLQIEHLLNRKPGQMSGGQQQRVAMGRALARRPKIYLFDEPLSNLDAKLRVEMRTEMKLMHQRLKTTTVYVTHDQIEAMTLGDKVAVMKDGIVQQFGTPKQIYTDPANLFVASFIGSPPMNFIPLRLQRKDGQLIAALDSGQARCELPVGVSDAGLEDREIILGIRPEQIMLAGAESTGLPTIRAEVQVTEPTGPDTLVFVTLNQSKVCCRLAPDVAPQVGESLTLQFDPARVLIFDAQSGERLGVLGARQAAERENNVSPVQPQVIN
>NZ_CP026568.1|WP_004406653.1|1259606_1260452_+|carbohydrate-ABC-transporter-permease
MTSHVGKPGISFSRVLIYAVLMLACLIYLVPLVVMLFTSFKTPEDIGTGNLLSWPSVVTAIGWIKAWDLVDGYFWNSIKITVPAVIISTAIGALNGYVLSMWRFKGSQLFFGLLLFGCFLPFQTVLLPASFTLGKMGLANTTTGLVFVHVVYGLAFTTLFFRNYYVSIPDALVKAARLDGAGFFTIFGRIILPMSTPIVMVCLIWQFTQIWNDFLFGVVFSSGESQPITVALNNLVNTSTGAKEYNVDMAAAMIAGLPTLLVYVLAGKYFLRGLTAGAVKG
>NZ_CP026568.1|WP_054091518.1|1258705_1259614_+|sugar-ABC-transporter-permease
MSSVAANSKASPMDALQRWLPELVLAPSMFIVLVGFYGYILWTFALSFTNSTFLPSYKWVGLAQYARLMDNDRWWVASKNLAVFGGMFIAISLVIGVLLAVLLDQRIRREGMIRTIYLYPMALSMIVTGTAWKWLLNPGLGLDKMLRDWGWEGFRFDWLIDQDRVVYCLVIAAVWQSSGFVMALFLAGLRGVDQSIIRAAQMDGASLPMIYWRVVLPSLRPVFFSAVMILAHIAIKSFDLVAAMTAGGPGYSSDLPAMFMYSFTFSRGQMGMGSASAILMLGAILAILVPYLYSELRTKRHD
>NZ_CP026568.1|WP_054091517.1|1257314_1258601_+|carbohydrate-ABC-transporter-substrate-binding-protein
MNSMSRLAVVISLASLFPLSANAADSKGTVEVVHWWTSGGEKAAVDVLKAQVEKDGFAWKDGAVAGGGGSTAMTVLKSRAVAGNPPGVAQIKGPDIQEWASTGLLDTEALKKVAKSEKWDSLLDKKVSDTVKYEGDYVAVPVNIHRVNWLWINPEVFKKAGIDKAPTTLEEFYAAGDKLKKAGFIPLAHGGQPWQDSTVFEAVVLSVMGADGYKKALVDLDKDALTGEGMVKSLTELKKVATYMDADGKGQDWNLEAAKVINGKAGMQIMGDWAKSEWTAAKKVAGKDYQCVAFPGTDKAFTYNIDSLAVFKQKDEGTTAAQQDLAKVAMGEDFQKVFSINKGSIPVREDMLSDMSKYGFDSCAQTAAKDFLADSKTGGLQPSMAHNMATTLAVQGAFFDVVTNYINDPSADPAATAKKLATAIKSAQ
>NZ_CP026568.1|WP_054091531.1|1255738_1257145_+|HAMP-domain-containing-protein
MLLLTLLAVLLAQALSSVIWLSQLRATQMEGLVTSARSLAYSMAASVSYFRSLPLAYRPMVLDQLRSMGGTRFVVSLNDHPLDMQIMQPTPRKQAVLDVVGEVLRQRLGNGPDITVWFARPEDLRIFNSGLKLDELPRSWAHYALTLEPVNPPVLVTQIEMAPGEWFYIASLLPEPYTSLEEQELPLQQVSFIVLTSAFLLLFIGLLVHWQSRPLKRLARAARDMSLGADVEPVVEGGGSEVIEVSRAFNAMRTRISRYLTERGQLFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELLVKGALQCVKDTDIHENIEPVDLNALLEYLVEPWLLADGNGRVTQQGEAQAAYSGKPLALKRCIGNLIDNALKYGDRAHLKVEDDAHAFVLHVDDEGPGVPEQRLEHVFEPHFRLAGNQQQGYGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPRTAE
>NZ_CP026568.1|WP_054091516.1|1254939_1255677_+|response-regulator-transcription-factor
MSPVSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPSDLLILDVMLPDEDGFSLCRWIRQHPRQPRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRAQFGQERPGGDVILFDEWRLDMVSHRLFHNDGEEVILSGADFALLKLFLDNPQQILDRDTIGNATRGRELMPLERIVDMAVSRLRQRLRDTGKSPRLIRTIRGSGYLLAANVNSQAGNGY
>NZ_CP026568.1|WP_054091515.1|1253923_1254889_+|glucokinase
MKLALVGDIGGTNARFAIWENSTLHSVRVFPTIDYAGPEKAIEVYLQDLELQRGDIGHVCLAVAGPVDGDFFQFTNSHWQLSREAFCADLQVDELLLINDFTAMALGMTRLKDDEYLTVCHGVGKPDRPRVVVGPGTGLGVGTLIKLEGSRWMALPGEGGHADLPIGTAREALLWTRLMAEHEHVSAEVVLSGAGLLLLYQVSCALDDIKPVLKSPAAITTAALSGDPVAAAVLEQFCVFLGRVVGNHVLALGSLGGVYIVGGVVPRFTEFFINSGFKRAMAEKGVMSDYFKGLPVWLVTAEYPGLMGSGVALQQAFGAQI
>NZ_CP026568.1|WP_004406660.1|1252100_1253927_+|phosphogluconate-dehydratase
MHPRVLEVTERLIARSRDTRQRYLQLIRGAASDGPMRGKLQCANFAHGVAACGPEDKQSLRLMNAANVAIVSSYNEMLSAHQPYEHFPAQIKQALRDIGSVGQFAGGVPAMCDGVTQGEPGMELAIASREVIAMSTAIALSHNMFDAAMMLGICDKIVPGLMMGALRFGHLPTIFVPGGPMVSGLSNKEKADVRQRYAEGKATREELLDSEMKSYHGPGTCTFYGTANTNQLVMEVMGMHLPGASFVNPYTPLRDALTAEAARQVTRMTKQSGSFMPIGEIVDERSLVNSIVALHATGGSTNHTLHMPAIAQAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMSFLIRELLAAGLLHENVNTVAGYGLSRYTKEPFLEDGKLVWREGPLESLDENILRPVARPFSPEGGLRVMEGNLGRGVMKVSAVAPEHQIVEAPAKVFQDQKELADAFKAGELECDFVAVMRFQGPRCNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVCPEAFDGGPLALVRDGDVIRVDGVKGTLQVLVEASELAAREPAINQIDNSVGCGRELFGFMRMAFSSAEQGASAFTSSLETLK
>NZ_CP026568.1|WP_002552324.1|1264239_1265106_-|MurR/RpiR-family-transcriptional-regulator
MDRVRNLLEQIQGRLDELNKAERKVAEVILLNPQMATRLSIAALAQAAKVSEPTVNRFCRSFSVSGYPELKLQLAQSLASGAAYVSRAVEADDNPEAYTQKIFGSAIASLDSACQQLDPALISKSVDMLIQARQIHFFGLGASAPVALDAQHKFFRFNLAVTAHADVLMQRMIASVAHTGELFVIISYTGRTRELVEVARIARANGASVLGLTAAGSPLAQASTVSLNIPLPEDTDIYMPMTSRIIQLTVLDVLATGMTLRRGVDFQPHLRKIKESLNDSRYPIEDQG
>NZ_CP026568.1|WP_011266836.1|1265324_1266794_+|glucose-6-phosphate-dehydrogenase
MPLITVEPCTFALFGALGDLAVRKLFPALYQLDRAGLLHEDTKILALAREPGDEESHLAYIEKSMRRFIPETELEPDNLSRFLARLSYLHVDFLKAEDYVALAERVGNAETLIAYFATPASVYGAICENLASVNLAERTRAVLEKPIGHDLASSRRVNDAVAQFFPENRVYRIDHYLGKDTVQNLIALRFANSLFETQWNQNHISHVEITVAEKVGIEGRWGYFDQAGQLRDMIQNHLLQLLCLIAMDPPSDLSADSIRDEKVKVLKALAPFTPERLATQVVRGQYTSGYSEGKAVPGYLEEENSNTQSDTETFVALRADIRNWRWSGTPFYLRTGKRMPQKLSQIVIHFKEPPHYIFAPEQRLQISNRLIIRLQPDEGISLQVMTKDQGLDKGMQLRSGPLQLNFSDTYRSARVPDAYERLLLEVMRGNQNLFVRKDEIEYAWQWCDQLIAGWKKAGDAPKPYPAGTWGPMSSIALITRDGRSWYGDM
>NZ_CP026568.1|WP_024651214.1|1266780_1267494_+|6-phosphogluconolactonase
MATCDLKLPAGLVAHDFDTAQQLADALAENVAERLKQAISENGLATLVVSGGRSPVAFFQSLATQPLEWSKVVISLADERFVPTEHADSNAGLLQRHLLQGPVAKARFLGLYSVASSVEEAAQAADQALAELPPIDVLILGMGDDGHTASLFPNSPNLSEALDLQGERRCLPMLAPSVPHQRLTLTRRLLASARSPILSVSGQAKLDTLRTALAGDDLAEMPVRAFLNPSLEIYWCP
>NZ_CP026568.1|WP_011266838.1|1267530_1268205_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MTQNENNQPLTSMANKIAQIDELCAKAKILPVITIARDQDVLPLADALAAGGMTALEVTLRSAFGLSAIRILREQRPELCVGAGTILDRKMLADAEAAGSQFIVTPGSTQELLQAALDSPLPLLPGISSASEIMIGYAMGYRRFKLFPAEISGGVAAIKALGGPFNEVRFCPTGGVNEQNLKSYMALPNVMCVGGTWMIDNAWVKNGDWGRIQEATAQAMALFD
>NZ_CP026568.1|WP_003341842.1|1268332_1268572_-|DUF3820-family-protein
MNPEKLKLLVTQEMPFGKYKGRLIADLPGHYLNWFAREGFPKGELGGLLALMQEIDHNGLGALLDPLRTRPRQSFKDKG
>NZ_CP026568.1|WP_024651215.1|1268790_1269270_+|PA2169-family-four-helix-bundle-protein
MTDINKETISILNDLIETSKDGEEGFRTSAEHAKSAQVKSFLANRSTEVAAAVRELQAEVTALGGKPEDSSSVSGALHRAWVNLKSMVTSDDDKAVLEEVEKGEDVAKKAYREALEKARANNVSTNVIALIEKQQAGVLANHDKVKALRDAARAAHAAS
>NZ_CP026568.1|WP_004406640.1|1269340_1270870_-|diguanylate-cyclase
MMVFAFSRQARLRWTRPELILIFGSSVSMLAILAIVASLLARERDDAAQTAARAASNIVRLIDADVMRNAELYDSSLQGMISAWQRPDLQQLSPELRQLVLFDRATAASYKGDLVLLDNRGEILADSLSVIPRQDNFSDRAYFKDHATDRSLTLHVSAPYKTRWGYKDWCISFSRRISGPNGEFMGIVSAAMRLVYFKHLFMSQNLGSESSINLINTSGILIVRYPEMEGQDLIGKDYSHSPNFQRILQEGDGSFAAMSTQLNARRLYTFSRVGNLPLIVVIGQSEDEVYAVWRRNAWLVGSATSVLCLGILWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKPLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRVARYGGEEFVVVLPETDLPGAMLIAEKIRKAAESLPLFRNAEHPITVSIGVASEVVRQGDKLEAFFGVADKALYQAKDNGRNRVEYRSSVARKVTDQV
>NZ_CP026568.1|WP_024660810.1|1271076_1272441_-|heavy-metal-sensor-histidine-kinase
MRVDSIALRLSGMFALVALVVFLLIGWALYLQVDKSLDLLPRAEVDARYSVLESAVNRFGNPEHWGKIKNKLSLLSEEDKRLRFWVVSDNPLYEFGNPGADIRRFAHGPLGMHDLRLADHPFSFKVLVSEFPAKEQRPALRFLTAIDTETFWHTQHSLLVALISLATLGILLASALGYWVARIGLRPLTSLSQEVQKLAPPRLSGRLQLSPLPPELEQFVASFNSTLERVEQAYSRLESFNADVAHELRSPLTNLIGQTQVALTRGRSAEHYFEVLQSNLEELERLRSIINDMLFLASADQGTRVKAQTCTSLAEEVATTLDYLDFILEDAHVQVRVNGDASAPIEKSHLRRALINLLHNAVQHTGAGEAIEVNIESRDAHVTVSVTNPGVHIAQEHLPRLFERFYRVDASRSNSGANHGLGLAIVKAIALMHGGTVFVNSDKGANTFGIQLPR
>NZ_CP026568.1|WP_003314062.1|1272430_1273108_-|heavy-metal-response-regulator-transcription-factor
MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGFGVLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGHEPVQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDINFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLENRSAG
>NZ_CP026568.1|WP_054091520.1|1273118_1276223_-|multidrug-efflux-RND-transporter-permease-subunit
MNGRGSVSAWCIDHPVATLLLTFALVLLGVIAFPRLPIAPLPEAEFPTIQVTAQLPGASPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADSPVLILSVSSSLIPGTELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAALGLTLADIRLAVQQTSLNLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQGELPRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHHPHQKPGFGERLLTSYERGLRKALAHQRLMLGVFGLTLALAVVGYILIPKGFFPVQDTAFALGTTEAAADISYPDMVEKHLELAKIVGADPAVLAFSHSVGVSGSNQTIANGRFWISLKPRAERDVSVSEFIDRLRPKLAKVPGIVLYLRAGQDINLSSGPSRSQYQYVLKSNDGELLNTWTQRLTEKLRSNPAFRDMSNDLQLGGSVTHIDIDRSAAARFGLTTADVDQALYDAFGQRQISEYQTEVNQYKVILELDAQQRGKAESLAYFYLRSPLTSEMVPLSALAKVSAPRMGPLSISHDGMFPAANLSFNLAPGVALGDAVRMLDQAKNEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFVHPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVDFALQAQREQGLTSHEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVSQMLTLFTTPVIYLQLERLFHRRHPAPAAPAPALHK

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Crispr_ID: NZ_CP026568_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026568_4

1689860-1689996

Orphan

Consensus_repeat	Method
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026568_4

>merge|NZ_CP026568|4|1689860-1689996|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGCGTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACGCCAATCCACCTGACATCGCAGAACCGCTGTGTGACGCGGAGC

>NZ_CP026568|4|3|1689860-1689996|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	GTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACG
CCAATCCACCTGACATCGCAGAACCGCTGTGTGACGCGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026568.1\|WP_011267130.1\|1695322_1696180_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_CP026568.1\|WP_024639958.1\|1676001_1676964_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_CP026568.1\|WP_054092772.1\|1677729_1678719_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP026568.1\|WP_054091472.1\|1693876_1695061_+\|patatin	unknown	unknown	gnl\|CDD\|132848
NZ_CP026568.1\|WP_054091474.1\|1696966_1697485_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_004408361.1\|1695102_1695339_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239550
NZ_CP026568.1\|WP_003317454.1\|1691006_1691819_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP026568.1\|WP_054092771.1\|1678720_1679518_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP026568.1\|WP_024642759.1\|1690026_1690662_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP026568.1\|WP_011267121.1\|1676983_1677637_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP026568.1\|WP_003368366.1\|1688134_1689424_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_CP026568.1\|WP_003368369.1\|1692050_1692791_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234730
NZ_CP026568.1\|WP_080377257.1\|1682608_1683370_+\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|132380
NZ_CP026568.1\|WP_054092768.1\|1681228_1682296_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270267
NZ_CP026568.1\|WP_054092770.1\|1679504_1680347_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226616
NZ_CP026568.1\|WP_054092769.1\|1680343_1681150_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224441
NZ_CP026568.1\|WP_011267129.1\|1692911_1693844_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235543
NZ_CP026568.1\|WP_060401995.1\|1683829_1687882_+\|Ice-nucleation-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_054091473.1\|1696179_1696977_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP026568.1\|WP_003317453.1\|1690752_1691007_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|234718

Protein	Function_ID	Function_description	E-value
NZ_CP026568.1\|WP_011267130.1\|1695322_1696180_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	6.59427e-20
NZ_CP026568.1\|WP_024639958.1\|1676001_1676964_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	6.52004e-151
NZ_CP026568.1\|WP_054092772.1\|1677729_1678719_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	5.52828e-146
NZ_CP026568.1\|WP_054091472.1\|1693876_1695061_+\|patatin	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	2.66795e-39
NZ_CP026568.1\|WP_004408361.1\|1695102_1695339_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.48988e-09
NZ_CP026568.1\|WP_003317454.1\|1691006_1691819_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.8418e-167
NZ_CP026568.1\|WP_054092771.1\|1678720_1679518_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	5.78981e-59
NZ_CP026568.1\|WP_024642759.1\|1690026_1690662_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.3798e-77
NZ_CP026568.1\|WP_011267121.1\|1676983_1677637_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.99207e-57
NZ_CP026568.1\|WP_003368366.1\|1688134_1689424_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP026568.1\|WP_003368369.1\|1692050_1692791_-\|septum-site-determining-protein-MinC	gnl\|CDD\|234730	PRK00339, minC, septum site-determining protein MinC.	8.00188e-159
NZ_CP026568.1\|WP_080377257.1\|1682608_1683370_+\|UTRA-domain-containing-protein	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	1.99428e-81
NZ_CP026568.1\|WP_054092768.1\|1681228_1682296_-\|extracellular-solute-binding-protein	gnl\|CDD\|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.77616e-57
NZ_CP026568.1\|WP_054092770.1\|1679504_1680347_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.57836e-110
NZ_CP026568.1\|WP_054092769.1\|1680343_1681150_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|224441	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only].	2.34898e-39
NZ_CP026568.1\|WP_011267129.1\|1692911_1693844_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235543	PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
NZ_CP026568.1\|WP_054091473.1\|1696179_1696977_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	2.30973e-35
NZ_CP026568.1\|WP_003317453.1\|1690752_1691007_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|234718	PRK00296, minE, cell division topological specificity factor MinE; Reviewed.	1.35704e-46

>NZ_CP026568.1|WP_003368366.1|1688134_1689424_-|M18-family-aminopeptidase
MRAELNKGLIDFLKASPTPFHATATLVQHFEAAGFQRLDERDTWAVETGGRYFVTRNDSSIVAFRMGRQSPLTGGIRMVGAHTDSPCLRVKPQPELQRQGFWQLGVEVYGGALLAPWFDRDLSLAGRVTFRRDGKVESQLIDFKLPIAVIPNLAIHLNRTANEGWAINAQNELPPILAQVAGDERADFRALLTDQLAREHGLNADVVLDYELSFYDTQGAAVVGLNGDFLAGARLDNLLSCFAGMQALLNTESDETALLVCTDHEEVGSSSACGADGAMLEQIVQRLLPSSEDYVRTIQKSLLISADNAHGIHPNYADKHDANHGPKLNAGPVIKVNSNQRYATNSETAGFFRHLCMAEEVPVQSFVVRSDMGCGSTIGPITASHLGIRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLSAFYASHELP
>NZ_CP026568.1|WP_060401995.1|1683829_1687882_+|Ice-nucleation-protein
MNLDKALVLRTCANNMADHCGLIWPASGTVESKYWQSTRRHENGLVGLLWGAGTSAFLSVHADARWIVCEVAVADIISLDEPGMVKFPRAEVVHVGDRISASHFISARQADPASTPPPTSMTTPPPTPTPAAAHVTLPVAASVTLPVAEQASHEVFDVALVSAAAPSVNTLPVTTPQNLQTATYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGSDSSLVAGYGSTQTAGGDSALTAGYGSTQTAREGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQQGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAQQGSVLTSGYGSTQTAGAASNLTTGYGSTGTAGHESFIIAGYGSTQTAGHKSILTAGYGSTQTARDGSDLIAGYGSTGTSGSSSSLIAGYGSTQTASYKSMLTAGYGSTQTAREHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERSDLVAGYGSTSTAGYSSSLIAGYGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYESTLTAGYGSTQTAQERSDLVTGYGSTSTAGYASSLIAGYGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGSTQTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAGYGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGHESIQVAGNKSMLIAGKGSSQTAGFRSTLIAGAGSVQLAGDRSRLIAGADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQSRLTAGKNSILTAGARSKLIGSEGSTLSAGEDSTLIFRLWDGKRYRQLVAKTGENGVEADIPYYVNEDDDIVDKPDEEDDWIEVE
>NZ_CP026568.1|WP_080377257.1|1682608_1683370_+|UTRA-domain-containing-protein
MPRNRAGLVQMDTGMREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERRLSEVFATTRITLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWRHDAIHVRAEVHGD
>NZ_CP026568.1|WP_054092768.1|1681228_1682296_-|extracellular-solute-binding-protein
MKHLLLASLLGSAMAMSSLVMAADTDLKTLEAAAKAEGAVNSLGMPDDWANWGGIWKDLEAKYGLKHMDTDMSSAQEIAKFEAEKDNASGDIGDVGAAFGPIAAAKGVTQPYKPTTWEQIPTWAKDTDGHWALAYTGTIAFIVNKNLLHGSDIPKSWADLKTGKYKVSIGDVSTAAQAANGVLAAAIAMKGDESNIAPGLALFTDLAKQKRLSLANPTIQTIEKGEIEVGVVWDFNGLSYKAKMTKPDDYVVLIPSDGSVISGYTTIINKYAKHPNAAKLAREYTFSDAGQIRLAEGNARPIRLEHIKLPEDVQAKLLPQDQYKNAKPIKNADAWEKTSKALPQMWNEQVIIEMN
>NZ_CP026568.1|WP_054092769.1|1680343_1681150_-|alkaline-phosphatase-family-protein
MKHNVILIVLDGLNYEVARHAMGHLQAWHAAGRAALYKIECELPALSRPLYECILTGVAPIDSGIVHNNVSRLSNQRSIFHYARDAGLSTAAAAYHWVSELYNRTPFDPARDRHTEAADLPIQHGLFYWADHYPDSHLFADAESLRLSHAPNFLLIHPMNIDDAGHKHGLDTAQYRNSARSADIILADYLRRWLDAGYQVLVTADHGMNNDRSHNGLLPEEREVPLFVIGDAFSLNVDAAPRQTDLCGTVCELLGVPHDKAVCREILN
>NZ_CP026568.1|WP_054092770.1|1679504_1680347_-|ABC-transporter-permease-subunit
MTTFSRGKWLGLLCLLPFAVFFIVFQIAPLLWVAIHSLQSDAGWGWANFTRAFSSKFYRQAIQYSLEISFWSSLFGIIISVLGAYSLRKVDLRLRDFVNSFANMTSNFAGVPLAFAFIILLGFNGALTLILKQTGIIDDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDAVREDWNESAALLGASSYQFWRYIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAMVAGDITLDPNMASALAMILVGLMTLVTVVHQWLLRRSYHVTR
>NZ_CP026568.1|WP_054092771.1|1678720_1679518_-|ABC-transporter-permease
MSRVERGPASFYHKTVVCLLFLILLLPLAGTFLYSIATSWSATILPSGLTFKWYVALWSDPRFLTAFGQSLLVCVGALILSVVLILPLLFVVHYYFPRLDGLMNILILLPFAVPPVVSSVGLLQLYGSGPMAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLTDLMDAARLLGASTWQAAFMVVLPNLRKGLMIALLLSFSFLFGEFVFANLLVGTRYETLQVYLNNMRNSSGHFNSALVISYFLFVLVLTWAANRLNKDKD
>NZ_CP026568.1|WP_054092772.1|1677729_1678719_-|ABC-transporter-ATP-binding-protein
MSFVSIENLQKSYASTSVFSDINCSIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGRILLDGSDLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLHIQKVSADESTRRVTDILRMVELHDFATRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKNLREQIRAIQRELGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEADDATRLMQRPINSRVAIRPESIQLSLTGELEGEIRSHSLLGNVIRYRVQARGVKLVVDVLNRSADDLHPDGRRVTLNIEPSALCALD
>NZ_CP026568.1|WP_011267121.1|1676983_1677637_-|HAD-IB-family-hydrolase
MPLAIFDLDETLIGGDCATLWSEQMGRLGWVDSTSFMQRNDELMAAYSEGKLAMEDYMAFSLEPMAGRTPEEIEHLVGPWVEDVIEPIIYSDACTCIAKHRAKGDRILVISASGVHLVKPIAERLGIDEVLGIELDVQHGVYSGATVGVLTYREGKITRLMEWLDAEGENLEGASFYSDSRNDLPLLLKVDHPNVVNPDAVLLEHARKAGWPVHDWS
>NZ_CP026568.1|WP_024639958.1|1676001_1676964_+|NAD(P)H-quinone-oxidoreductase
MKALQGVEGHVEWVEEPSPALDVGQVRIKVAAAGLNRADLLQREGKYPPPPGVTQTLGLECSGVIAEVGPGSSWVVGDRVCALLAGGAMAEEVVVDGRHVLPVPEGLSLHEAAAIPEVYATAWLNLFELAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSAERLAYCVELGAQGGVVRSESLEGLNDFAPFNVILDPVGASYAELNVKLLALDGRWVLIGVMSGREAKVDLAHVLGKRIRLMGSTLRSRDDTFKADLLSDLGQHVWPLFTEGRLKPQLAKSFAIKDAEAAFEELATNTVSGKIVLVINESLV
>NZ_CP026568.1|WP_024642759.1|1690026_1690662_-|RluA-family-pseudouridine-synthase
MPLSNIRIIHQDAAVLVIDKPTLLLSVPGRADDNKDCLITRLQENGYPEARIVHRLDWETSGIILLARDADTHRELSRQFHDRETEKAYTALCWGQPSLDSGSIDLPLRYDPPTKPRHVVDHEGGKHALTFWKVVERHDTYCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHPEALAAYPRLCLHASMLSFTHPGTGERLTFECAAPF
>NZ_CP026568.1|WP_003317453.1|1690752_1691007_-|cell-division-topological-specificity-factor-MinE
MNIFDFFRDRKKGSTASVAKERLQIIVAHERGQRSTPDYLPALQKELVEVIRKYVNIESDQVQVALESQGSCSILELNITLPDR
>NZ_CP026568.1|WP_003317454.1|1691006_1691819_-|septum-site-determining-protein-MinD
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVVNGEANLQQALIKDKKIEGLFVLAASQTRDKEALTKEGVEKVLMELKESFEYIVCDSPAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAERGEDPIKEHLLLTRYNPERVSKGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSDAVDRLLGKTLEHRFLDVHKKGFFERLFGGN
>NZ_CP026568.1|WP_003368369.1|1692050_1692791_-|septum-site-determining-protein-MinC
MSQIESQNPEPVFQLKGSMLAITVMELARTNLEALDRQLAAKVAQAPNFFSNTPLILALDKLAPNEGPVDLPGLVRICRQHGLRTLAIRANRIEDIAAAIAVDLPVLPPSGARERVIDPVEAEAPKKIPEKPPEPLIKPTRVITAPVRGGQQIYAQGGDLVVVAPVSPGAELLADGNIHVYGPMRGRALAGIKGDTKARIFCQQLSAELISIAGQYKVSEDLRRDPLWGSPVQISLSGDVLNIIRL
>NZ_CP026568.1|WP_011267129.1|1692911_1693844_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MDRPRLKASFLHPRFWPLWLGLGLLWLIVQLPFCVLLVIGRALGAIMYRVATDRKKIASRNLELCFPHLSAAERKRLLKENFASTGIAFFEMAMSWWWSKKRLARLAHVEGLEHLQNAQEKGEGVILMALHFTTLEIGAALLGQQHTIDGMYREHKSPLFDFVQRRGRERHNLDSLAVERDDVRGMLKLLRAGRAIWYAPDQDYGAKQSIFVPLFGIQAATVTATSKFARLGRAQVVPFTQRRLADGSGYRLVIHPPLDNFPGESDEADCLRINQWVEKAVTECPEQYLWAHRRFKSRPPGEPKLYNKHK
>NZ_CP026568.1|WP_054091472.1|1693876_1695061_+|patatin
MPDPAVAINAVRSPVEPVTGLILSGGGARAAYQVGVLAGIADLLPAGAPNPFPVIVGTSAGAINAVKLASGALHFRIAIHQLTEFWQSFRSHQVLRSDWSGVIHQASRFFGRSLMGFGRNIPVALLNSSPLRELLNERLDLSGIEAAINAHHLRAVAVTAFGYESGQAVTFYQGRGTIEPWLRHRRIGRPTQLTVDHLLASSAIPLLFAPVMLDKEYFGDGAVRQSAPISPALHLGANRVLVVGVSGNPRGLKSERPAPRPPNGMQPSLAQISGHMLNSTFIDNLESDIELLERLNTASALLPDEQIRQPGMEPVEVLVISPSRPLDEIAARHRRELPPALRTFLRGPGATRSSGASVLSYLLFESGYCSELIELGRHDAIAQGAELKRFLLLT
>NZ_CP026568.1|WP_004408361.1|1695102_1695339_-|Rieske-2Fe-2S-domain-containing-protein
MNEPAEFRRPDTFTVHIGQEQYLIPSSCPHREGWLEHGVVNEKRRSITCPLHFSVFSLETGEQLSGPPCGQLQVRRVR
>NZ_CP026568.1|WP_011267130.1|1695322_1696180_-|iron-containing-redox-enzyme-family-protein
MEDLHKQLFLANRALIEKRVPMPQAILAFEQHWIEDAIERSMTADAPDDLAGLRRMLAELVEQESSEVPPSAQYVANDMTLDEFRILVQEFALDGLTEAQVFYHLMPRLSLPAQMPMLRMMIDEFGSGNLKRSHTTLYQDLLRELEMPLDLQFYVDANSSAGFTFPNMFCWLAMRADDASWFAGVITYFETVVPFFFECYTQLCERLQIKAHTYYSEHVHIDVFHAIEGQRLLKAMDVSGDLDPVKAWRGICMGREITNLAFDLAVEKARRLKHFNKEVSLERAC
>NZ_CP026568.1|WP_054091473.1|1696179_1696977_-|dihydrodipicolinate-synthase-family-protein
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLARQQWLQMLTLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQEVATLNQRYLLNAPDWYAHIKRELKARGVINSERVVTEEAA
>NZ_CP026568.1|WP_054091474.1|1696966_1697485_-|hypothetical-protein
MSDFDLPMIDATVFMGMHHADPGVRDKSLEFFSRFYESSVQMNFAQIGICDAIIWKKGRALQDAYYPFMDVLHTDMAIQREGYSEQVLQRAAGETLFRGLPADKKLLAAQVLEQEIPFYTHDPELLRLQVLQPFLQPFESTIRRQTFPKMLQRLYDQSCAMVISNEDFQHVR

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Crispr_ID: NZ_CP026568_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026568_5

4375799-4375900

Unclear

Consensus_repeat	Method
GCTCCGCATGGGTATGCCGTTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP026568_5

>merge|NZ_CP026568|5|4375799-4375900|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCTGGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCATGCTCCGCGTGGGTATGCCGTTCT

>NZ_CP026568|5|4|4375799-4375900|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCT	GGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCAT
GCTCCGCGTGGGTATGCCGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026568.1\|WP_053275722.1\|4382950_4383850_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176150
NZ_CP026568.1\|WP_024650582.1\|4383938_4384739_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP026568.1\|WP_003402488.1\|4371789_4372626_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NZ_CP026568.1\|WP_003402465.1\|4382517_4382931_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_011268648.1\|4373945_4374674_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
NZ_CP026568.1\|WP_103359350.1\|4377725_4377959_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_011268643.1\|4368490_4369456_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_CP026568.1\|WP_054091820.1\|4380026_4382399_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_CP026568.1\|WP_011268647.1\|4373234_4373801_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_054091819.1\|4385429_4386458_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP026568.1\|WP_003402493.1\|4369679_4369871_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP026568.1\|WP_003425465.1\|4374743_4375607_+\|lipoprotein	unknown	unknown	unknown
NZ_CP026568.1\|WP_080377140.1\|4377873_4379124_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236532
NZ_CP026568.1\|WP_011268655.1\|4384856_4385372_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227262
NZ_CP026568.1\|WP_011268644.1\|4370541_4370943_-\|DUF2177-family-protein	unknown	unknown	gnl\|CDD\|378319
NZ_CP026568.1\|WP_003425462.1\|4372941_4373121_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_003363371.1\|4370083_4370464_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_054091822.1\|4371087_4371720_+\|DsbA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|239322
NZ_CP026568.1\|WP_003402477.1\|4376385_4377723_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP026568.1\|WP_003412780.1\|4379120_4379810_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NZ_CP026568.1\|WP_011268643.1\|4368490_4369456_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.83791e-66
NZ_CP026568.1\|WP_024650582.1\|4383938_4384739_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	2.78967e-64
NZ_CP026568.1\|WP_003402488.1\|4371789_4372626_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	2.50446e-108
NZ_CP026568.1\|WP_011268648.1\|4373945_4374674_+\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	6.73715e-46
NZ_CP026568.1\|WP_053275722.1\|4382950_4383850_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176150	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.35893e-96
NZ_CP026568.1\|WP_054091820.1\|4380026_4382399_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP026568.1\|WP_054091819.1\|4385429_4386458_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	3.14263e-44
NZ_CP026568.1\|WP_003402493.1\|4369679_4369871_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.96802e-09
NZ_CP026568.1\|WP_080377140.1\|4377873_4379124_-\|HAMP-domain-containing-protein	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	9.20635e-51
NZ_CP026568.1\|WP_011268655.1\|4384856_4385372_+\|hypothetical-protein	gnl\|CDD\|227262	COG4925, COG4925, Uncharacterized conserved protein [Function unknown].	1.6853e-44
NZ_CP026568.1\|WP_011268644.1\|4370541_4370943_-\|DUF2177-family-protein	gnl\|CDD\|378319	pfam09945, DUF2177, Predicted membrane protein (DUF2177). This domain, found in various hypothetical bacterial proteins, has no known function.	4.24722e-43
NZ_CP026568.1\|WP_054091822.1\|4371087_4371720_+\|DsbA-family-oxidoreductase	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	1.34545e-44
NZ_CP026568.1\|WP_003402477.1\|4376385_4377723_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.82325e-136
NZ_CP026568.1\|WP_003412780.1\|4379120_4379810_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.16624e-76

>NZ_CP026568.1|WP_003425465.1|4374743_4375607_+|lipoprotein
MQSLFKAFVTLLMTVALLAGCNQVGLAYRNLDVIIPWTLSDYLDMNSEQKGWLDVRLKQHLSWHCSTQLPEYLTWLDKLEDMVKTDQVTYEGLQARTSEAKEAIAKISKEITPSAVELLSRFDDKQVQEMQESFAKDQRKRENKYLDQPLERQIAERADRMQKRVTPWVGKLNQAQKDRIQAWSASLGEQNKAWIENRTRWQNLFLATVQQRQASDFPQRIAALLQDRETFWTPEYRKAYDQTEKAAISLIVDITALSTPEQRAKLLSRIADMRKDFTDLDCLKSQK
>NZ_CP026568.1|WP_011268648.1|4373945_4374674_+|hypothetical-protein
MLSHRLHVLSFSAMLVCQSVSAQVLERDLGDFDLKLATTPTRSMAQGLVTPTGGSGSFHGGMDLTHESGFYFGQWAPNMGLASDTGMELDSYMGFKKPFDNTLGYELGMIRYSYPDTSQIDSHEFYAGLRMRDSRIGAAFSNDVGTRDSTVFVDLGAIEQLGVGVRMQYANHQFDTPQSAADGGLINGFNDWSLNLSRPWLGIDMNLIYSGSSLSGGDCSVYSGHNARCDGTFTLKAVRSFF
>NZ_CP026568.1|WP_011268647.1|4373234_4373801_+|hypothetical-protein
MTTSWITLWTLSSLWNARMKNWMLFGALVYLGGCASHHCENGPNDSQLTDSPCRAEHLLYQNDMLQAKLLISEDNRENYELAEAMLRRAALDDASGEAEFYQAVLLIRQQADQKQIIDLLQTAAKHKHPLAIALLSQQLSVSDPKLAERYQSEYAQLDVAKSGYPSFEQALVVIRGLIIPSARTTAAN
>NZ_CP026568.1|WP_003425462.1|4372941_4373121_+|hypothetical-protein
MRIKASHSKAKPAPAVETSDSINAQIAAFLKSGGEIQQIAKGVSGQTFAPSKQINLGKK
>NZ_CP026568.1|WP_003402488.1|4371789_4372626_-|GntR-family-transcriptional-regulator
MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDKLLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRTLQAGDYCVVHVYLDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEVFKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKSDPQVISGLFGVSKGNFKKAIGALYKQGQIVIYADRIELV
>NZ_CP026568.1|WP_054091822.1|4371087_4371720_+|DsbA-family-oxidoreductase
MNTVGPLKIDVWSDYVCPFCYLQLAVLEQLQQTYGERLEFNWHAFELRPDPLALLDPSADYLRETWSRSVLPMAERRQVMMKMPSVQPRSRKVLEAAVFARNAGGFEAFHKEAYRAFFEKGLDISETHTLLELATATGLDRQAMEQALNAGHFEKAVLDDRQLAQKLGLRAVPVVLLRRSDEALEDARVFNGTLPFERLSQEIDALATWA
>NZ_CP026568.1|WP_011268644.1|4370541_4370943_-|DUF2177-family-protein
MKRILIAYFGTLLAFLILDGLWLGVLMGPTYREWLGPLMLDTPVLGPAIAFYLLYGAGVVFFGVMPALRVQRLSHATLCSGLLGLIAYGTYDLTNWATLQGWPAQLALVDHAWGTVVSALAGTAGYLAVRRFA
>NZ_CP026568.1|WP_003363371.1|4370083_4370464_+|hypothetical-protein
MKLDKKLAIARRNQDLGGAVLGVNNTHFAVLDHKRNIWWFDLPVPRLQVGQYEWLHLLLHTPETDQLLHLKVTTVFMRDHMEGLEVRNADKRKPTVSLELSADKDSFLKDMRPKGSNLSFAGFLQK
>NZ_CP026568.1|WP_003402493.1|4369679_4369871_-|CsbD-family-protein
MSSTSDKAKGMANEAVGNVKQAVGKATDNDKLQAEGKVQELKGEGQQTVGKVKDAIKKGVDKA
>NZ_CP026568.1|WP_011268643.1|4368490_4369456_-|YihY/virulence-factor-BrkB-family-protein
MIFPHLRKLKVGKVLVRTVNEFLDDEMSTYASALAYQMLFSLFPFLLFLIALIGFLHLPDFFSWLRLQSEFLLPPQALEQVNPVIDQLQQSKGGLLSIGIVIALWTASAGVRLMMSAMNAAYDVVEGRPIWKRLPLSILYTVGIAGMLLAAAAFMVLGPQVMNWIAAQIGMEDFIVTLWTILRWPAIIILLMVAVALIYYVMPDVKQEFRFITPGSVLAVVVWIVASLAFGFYVKTFADYNAMYGSIGAIIVLLLYFYISAAVLLLGAEMNAVIEHMSAEGKDAGEKEAGDGGEESSETVKQHVSGLGRDHSVPLQKADEA
>NZ_CP026568.1|WP_003402477.1|4376385_4377723_-|DEAD/DEAH-box-helicase
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNRPKSDLVSQDGMAPLKKRSTPAPAAE
>NZ_CP026568.1|WP_103359350.1|4377725_4377959_+|hypothetical-protein
MLPRRKTKIQLHSVTVSSAGAEFLYHQRPILFTNGRITAIRNAAKPLSAVTTPAAAHRPPDRRPADCVRRSARRAFR
>NZ_CP026568.1|WP_080377140.1|4377873_4379124_-|HAMP-domain-containing-protein
MRPNRLFWKLFLAFWLATSLTFMVGAGLFMFTQAGRGDPSFSTVLDNEVRILQQSGIAAGQALLDAWQPEGQGRVGLYDNQGLLLAGEPLENPRFELAVHTREGALVHIRSTQRPNHDDQPSHLNPLITGTVMSALFSWFLSSYLVAPLMKLREAMGKVARGRFDTRVKPDMGRRRDEIVDLAEDCDRMANQLKVMADSQQQLLHDISHELRSPLTRMSAAIGLLRQEPSQLDMLERIERESERMDSLIEELLTLARMQSDVESLTREKVDVISLLAAIVEDAEFEAGLKQCRVRLQAPGSFVAQVDSELLYRAFENVIRNAVRHTAVGSDVVVVANVQAQPLCLMVNVIDQGPGVDEACLQRIFQPFERGPENAAQGFGLGLAIALRAIEMHGGQIAARNRPGGGLVVDVLLPVS
>NZ_CP026568.1|WP_003412780.1|4379120_4379810_-|response-regulator-transcription-factor
MTSVLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEIEALSGRHDIVVLDIMMPRISGIEVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAVSVVDAVRDVIQAGELMLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSMNALGRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYMLITP
>NZ_CP026568.1|WP_054091820.1|4380026_4382399_+|outer-membrane-protein-assembly-factor-BamA
MISSRLLLSFCLLISVPLAHADTFSISDIRVNGLQRVSAGSVFAALPLNVGDQADEQRLADASRSLFKTGFFQDINVARDGNVLVINVVERPSIASIEIVGNKVISTEDLVKGLKQSGLSEGEIFQRATLEGVRNELQRQYVSQGRYSASVDTQALPAPRNRIALKITIDEGTVASIQHINVVGNTVFSDEQLADQFQLKTSNWLSFFKNDDKYAREKLSGDLERLRSWYLDRGYINMDINSTQVSLTPDKKGVFITVNITEGDRYTVGSVKLGGDLKVPKDQLEQLILVKPGQVFSRKVMTDSSNLITRRLGNDGYTFANVNGVPKANVADHTVDISFVVDPGKRAYANRINFRGNTKTADEVLRREMRQMEGGWASTYLIDQSKVRLERLGFFKEVNVETPAVPGTDDQVDINYAVEEQASGNITASVGFSQSAGLILGGSISQNNILGTGNFASLGMTRSEYQTKYNFAFTNPYFTPDGVSLGYNVFYNATDYSKYYDDDDEVSYYSLNSVGAGVNLGYPISETSRLTYGLSIQRDTLDPGSYSADEIYDFIEREGDAFTNLKASVGWSESTLNKGVLATRGHSQSLTLTSTVPGSDLQFYKLDYNGQTFLPLSDTTSLRLHTKLGYGNGYGDTDGLPFYENYTAGGQATVRGFKDGTLGPRNTPATGTYASQGQIYYSDRDTEALGGNILITGGMEYLFPMPFVKDQKSLRTSLFWDFGTVYADKCYLTTTQNCGNINIDQMASSVGVGVTWYSPLGPLSFDLAVPIKKPEDAETQVFQFSLGQTF
>NZ_CP026568.1|WP_003402465.1|4382517_4382931_+|hypothetical-protein
MSREVRQITPDVQEIIQHALRSLLGKGFVIALFGSEDATGAMHYHLRIDHDATGLGIEHHDHVEDGFIDDIFMLATRMKAMLKQRETLSRMHGGSQATGQVRLLTWITEDNSQTVVQTAEAAGRECLSALRERRLRA
>NZ_CP026568.1|WP_053275722.1|4382950_4383850_-|LysR-family-transcriptional-regulator
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALAALESALLPGRDFDPATADHTWRVAASDYATIALIWPSLGRLRNSAPGTRLAMLNKHPVSLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHDHPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALTSSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
>NZ_CP026568.1|WP_024650582.1|4383938_4384739_+|NAD(P)H-dependent-oxidoreductase
MNVLIVYAHPEPRSLNGSLKDFAVDHLQNNGHQVQVSDLYQMGWKPIIDANDAPGLESSSRFDPALESQRVFAAGIQPPDIEAEQARLLWADAVIFQFPLWWFSMPAIMKGWIERVYACGFAYGVGEHSDQHWGDRYGEGTLAGKRAMLTVTMGGWESHYSERGVNGALNDVLFPIQHGILFYPGFDVLAPFPVYRAGKVDSATFARICADYGNRLDTLFTLEPLPFRRQNDGDYEIPALTLRPELAAGRQGLGIHLRDEDGPADL
>NZ_CP026568.1|WP_011268655.1|4384856_4385372_+|hypothetical-protein
MVKARLRDSKTTLIARVTFAACVGFGALMPDLAETAYAQQPVSSSSSDKDQERGMNVRMYAGDKVVMLHLDDSETARDFVSLLPVELTLEDYAATEKISMLPRKLNVTGAPAGVTPIEGDIAYYAPWGNLAIFHKGFKYSHGLIRLGRVESGIEVIRQPGTVAVRFEVAND
>NZ_CP026568.1|WP_054091819.1|4385429_4386458_-|alpha/beta-hydrolase
MKKILLMLGLLISSYAATGADMSHGADNFYTSDKVVAQKVLFNNQYKMKVAGNLFIPKGSNPNVKAPAIIVGHPMGAVKEQSANLYAQKLAEQGFVTLSLDLSFWGGSEGQPRNAVSPDLYAEDFSAAVDFLGTQTFVDKKRIGVLGICGSGSFVISAAKIDPRMKAIATVSMYDMGAANRNGLKHSQTLAQRKKIIEQAALQRDVEYSGGDTAYTSGTVHKLTDTSGPIEREFYDFYRTPRGEFTPEGQSPDLTTHPTLTSNIKFMNFYPFNDIATISPRPMLFIAGSEAHSLEFSEEAYKLAGQPKQLIIVPGAGHVDLYDRVDLIPFDKLGEFFKNNLK

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Crispr_ID: NZ_CP026568_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026568_6

5620167-5620253

Orphan

Consensus_repeat	Method
GGGCAGAATCAAGAGCGGACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026568_6

>merge|NZ_CP026568|6|5620167-5620253|CRISPRCasFinder
GGGCAGAATCAAGAGCGGACTTGCGACCAACATCTTCGCGAACAAGTTGGCTCCCACGCCCGGAGGGCAGAATCAGGAGCGGACTTG

>NZ_CP026568|6|5|5620167-5620253|CRISPRCasFinder
GGGCAGAATCAAGAGCGGACTTG	CGACCAACATCTTCGCGAACAAGTTGGCTCCCACGCCCGGA
GGGCAGAATCAGGAGCGGACTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026568.1\|WP_080377117.1\|5613212_5613914_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_CP026568.1\|WP_004407356.1\|5620275_5621157_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_CP026568.1\|WP_011269275.1\|5630966_5631641_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP026568.1\|WP_002555767.1\|5627208_5628567_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP026568.1\|WP_011269266.1\|5612636_5613074_-\|DUF4399-domain-containing-protein	unknown	unknown	gnl\|CDD\|373020
NZ_CP026568.1\|WP_002555754.1\|5611171_5612401_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP026568.1\|WP_024660157.1\|5614987_5615929_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP026568.1\|WP_054091590.1\|5625775_5627140_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP026568.1\|WP_085990147.1\|5609616_5611035_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP026568.1\|WP_054091591.1\|5624534_5625632_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP026568.1\|WP_024640641.1\|5622070_5623213_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP026568.1\|WP_003420191.1\|5613989_5614748_+\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|378261
NZ_CP026568.1\|WP_024640574.1\|5614799_5614991_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026568.1\|WP_003372160.1\|5621153_5622074_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646
NZ_CP026568.1\|WP_054091592.1\|5623268_5624363_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP026568.1\|WP_080432853.1\|5631672_5632752_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP026568.1\|WP_003413528.1\|5629161_5630538_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP026568.1\|WP_054091641.1\|5607775_5608720_-\|SdiA-regulated-domain-containing-protein	unknown	unknown	gnl\|CDD\|369154
NZ_CP026568.1\|WP_054091643.1\|5616199_5618587_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|376618
NZ_CP026568.1\|WP_002555752.1\|5608902_5609568_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|182650

Protein	Function_ID	Function_description	E-value
NZ_CP026568.1\|WP_080377117.1\|5613212_5613914_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	8.58177e-49
NZ_CP026568.1\|WP_004407356.1\|5620275_5621157_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	2.58132e-118
NZ_CP026568.1\|WP_011269275.1\|5630966_5631641_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.62324e-09
NZ_CP026568.1\|WP_002555767.1\|5627208_5628567_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.38043e-153
NZ_CP026568.1\|WP_011269266.1\|5612636_5613074_-\|DUF4399-domain-containing-protein	gnl\|CDD\|373020	pfam14347, DUF4399, Domain of unknown function (DUF4399). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 135 and 1079 amino acids in length.	2.62307e-47
NZ_CP026568.1\|WP_002555754.1\|5611171_5612401_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP026568.1\|WP_054091641.1\|5607775_5608720_-\|SdiA-regulated-domain-containing-protein	gnl\|CDD\|369154	pfam06977, SdiA-regulated, SdiA-regulated. This family represents a conserved region approximately within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators. Some family members contain the pfam01436 repeat.	2.66651e-132
NZ_CP026568.1\|WP_054091590.1\|5625775_5627140_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP026568.1\|WP_085990147.1\|5609616_5611035_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	6.58936e-125
NZ_CP026568.1\|WP_054091591.1\|5624534_5625632_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP026568.1\|WP_024640641.1\|5622070_5623213_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP026568.1\|WP_003420191.1\|5613989_5614748_+\|DUF2059-domain-containing-protein	gnl\|CDD\|378261	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059). This domain, found in various prokaryotic proteins, has no known function.	0.00181793
NZ_CP026568.1\|WP_003372160.1\|5621153_5622074_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	9.92225e-152
NZ_CP026568.1\|WP_054091592.1\|5623268_5624363_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP026568.1\|WP_080432853.1\|5631672_5632752_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.69564e-30
NZ_CP026568.1\|WP_003413528.1\|5629161_5630538_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.39638e-154
NZ_CP026568.1\|WP_024660157.1\|5614987_5615929_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.89777e-34
NZ_CP026568.1\|WP_054091643.1\|5616199_5618587_+\|penicillin-acylase-family-protein	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	0
NZ_CP026568.1\|WP_002555752.1\|5608902_5609568_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|182650	PRK10691, PRK10691, fumarylacetoacetate hydrolase family protein.	1.37822e-77

>NZ_CP026568.1|WP_054091643.1|5616199_5618587_+|penicillin-acylase-family-protein
MKRSLFILAIIIALLAGGAGWYVNSKLPVRDGEIAMSRLQAPVTLRYDERGVPHIRAENEADLYRALGYAHAQDRLFQMEMLRRLARGELAEVLGPNLLETDKLFRSLRIREHADAYVARQDKNTPTWKALEAYIDGINQYQDTHARPMEFDALGIPRRRFTPEDTVSIAGYLAYSFAAAFRTEPLLTYVRDQLGPEYLKVFDLDWHPDGVLDSKPALADADWKGLNQLAQLSHKALEDAGLPQFEGSNAWVISGSRTQSGKPILAGDPHIRFSVPSVWYEAQLSAPGFELYGHFPALNPFALLGHNMDFGWSLTMFQNDDVDLIAEKTNPDNPNQVWYHGQWVDMKRTEQQIAIKGQAPVTLTLLESPHGPIVNNVMGKNAGQAPIAMWWSFLVSANPVLDGFYEANRADTLDKMRSAAEKIQSPGLNIVWANAKGDIGWWAAAQLPIRPQGVNPTFILDGSTAQADKLGFYPFSANPHEENPARGYIVSANFQPLSPTGMQIPGYYNPAERGQELNRQLSDASVKWDLAASKALQLDTQTDYAPSILRPLIPVLRSVVSDPDELALVERLASWKGDYPVDSVGATLFNQFLFDLTEETFHDELGDAMFETLLSSRVMDAALPRLAADADSPWWNNRNSPHEESRANTVKVAWRASVSHLRSLYGTNPDEWVWGKAHTLTQGHPLGSQKPLDMIFNVGPYAAPGTHEVPNNLSSSIRPAPWPVGYGPSTRRLIDFADPAHSLGINPVGQSGVPFDKHYSDQAKAFVNGEYLPQRFSEKDVAEHTEGVLRLVQGA
>NZ_CP026568.1|WP_024660157.1|5614987_5615929_-|alpha/beta-hydrolase
MSATFDPDNLRASLLPLSVIDPLSMEGLAYQRFYGLAGLCGENVIRSWLGRLDVAGYEVVGQVWLPDSPVATLFLFHGFYDHMGLYRHVIEWALEQRFAVIACDLPGHGLSSGSRACINDFAEYQLVLQRLLLEAEGLGLPHPWHLCGQSMGGAIVTDHLLHQGADSPAQGEVILLAPLVRPRAWGWSRLSYHLLRPFVNGIARRFTENSNAPAFLPFLMADPLQPLRLPTAWVGALGQWIVRVESAPRSLRSPLIIQGEADMTVDWSHNLAILKDKFSQPQILMLGHARHHLANETPELRARYFDFLKGRLR
>NZ_CP026568.1|WP_024640574.1|5614799_5614991_+|hypothetical-protein
MKDSLALLATGIVMAFFAWLFWSSLGQDAFAVFGALMLVVTAVDNSRLRRQVKALQAGKTEKL
>NZ_CP026568.1|WP_003420191.1|5613989_5614748_+|DUF2059-domain-containing-protein
MRRLFVLLLMFCTSPAWADSYDQLYKSAGWPEQRAHFNDALKAAQQRYSNNLPPAVYQALVNNSNQRFAPQAMDQRASKRLRESLKDPAPSLQFFQSPLGRKIVNAELTATRADQLAKHAQGLPHIEADATRQLLIGHLAQALPAREAGAEVSLAIAGVAADSLSQMIPGLFGGGQAQGMLEGQRERLMAQMSADLNNTLLYVYRDLSDPELEEFSTFAESPEGKAYYQAALAAIRAGLAVGQSASSLNPGQ
>NZ_CP026568.1|WP_080377117.1|5613212_5613914_-|2OG-Fe(II)-oxygenase
MKSRARDTACISLCPISGLMDTMHAMRIPSDHPLLLRIVDDLAANGWSQQNIFLPEALTLELEQECRKRAAEGELEPAAIGKGTALEIREGIRGDRIQWLEPGQVQCCDRYLELMDSLRQALNRGLFLGLEDYESHFALYPPGARYLRHVDRFRDDDRRMVSAVLYLNNAWLPEHGGQLRMYLKDEVAYDVQPAGGCLVVFLSGEIPHEVMPASRDRLSLTGWFRRRGNELFQ
>NZ_CP026568.1|WP_011269266.1|5612636_5613074_-|DUF4399-domain-containing-protein
MKSLFSGTMVAGLLLSASMLASAADIPRTAAPEGAEVYIISPKDGETVTSPFKVQFGLKGMGVAPAGVDVPETGHHHLLIDVKDQPAMNAPLPVSDNIRHFGKGQTETEINLPPGQHTLQLLMGDKGHMPLNPSVESKKITINVK
>NZ_CP026568.1|WP_002555754.1|5611171_5612401_+|phosphoglycerate-dehydrogenase
MSKTSLDKSKIKFLLLEGVHQSAVDVLKAAGYTSIEYHTKSLPEAELKEKIADAHFIGIRSRTQLTEELFDCAKKLVAVGCFCIGTNQVDLNAARERGIAVFNAPYSNTRSVAELVLAEAILLLRGIPEKNASCHRGGWIKSAANSFEIRGKKLGIIGYGSIGTQLSVLAEGLGMQVYFYDTLTKLPLGNATQVSSLNELLGMSDIVTLHVPETSETQWMIGEKEIRAMKKGSILINAARGTVVELDALADAIKDKHLIGAAIDVFPVEPRSNDDIFESPLRGLDNVILTPHIGGSTAEAQANIGLEVAEKLVKYSDNGTSVSSVNFPEVALPAHPGKHRLLHIHENIPGVLSEINKVFAENGINISGQFLQTNEKVGYVVIDVDAEYSDLAQAKLQQIKGTIRSRVLF
>NZ_CP026568.1|WP_085990147.1|5609616_5611035_-|FAD-binding-oxidoreductase
MNRSRVDSMTDRVLIDELQTLVDPGKVLTDAGSLETYGKDWTKQFTPAPLAIVFPKTTEQVQAIVRWANERLVALVPSGGRTGLSAAAVAANGEVVVSFDYMNQVLDLNLTDRTAVCQPGVITRQLQALAEDNGLYYPVDFASSGSSQIGGNIGTNAGGIKVIRYGMTRNWVAGLKVVTGRGDLLELNKDLIKNATGYDLRQLFIGAEGTLGFVVEATMRLDRAPKNLTAMVLGTSDFNSIMPVLHAFHGKLDLTAFEFFSDKSFARVMARGDVPSPFDTPCPFYVLLEFEATTEDLADQALATFEHCVEQGWVLDGVMSQSEQQLRNLWKLREYISETISHFTPYKNDISVTVSKVPEFLAEIDAIVAEHYPDFEVLWYGHIGDGNLHLNILKPESLDKDEFFVKCARVNKWVFETVEKYNGSISAEHGVGMTKRDYLTYSRSPVEIEYMKALKAVFDPNGIMNPGKIFAV
>NZ_CP026568.1|WP_002555752.1|5608902_5609568_-|fumarylacetoacetate-hydrolase-family-protein
MSYQHKYVDGTNIHFPLGKVVCIGRNYAEHAKELGNAVPTEPLLFMKPGSAVVALEGGFTIPADRGSVHYEAEIVVLIGKPLSKNPSREEVLDAISGFAPGLDLTLRDVQSRLREKGLPWELAKCFDGAAVIPPFVPAETFPDLEDIGIRLTLNGKVVQDGNSNMMLNPIVPMIQHMAANFSLQAGDLIMTGTPAGVGPFEAGDQIALELVGQTPFESVVR
>NZ_CP026568.1|WP_054091641.1|5607775_5608720_-|SdiA-regulated-domain-containing-protein
MASTAATPPCTKKRFAYLRNMRWYSWLVVVALLGYGLAFIMHWDDRALLWFQERFESKAGRHASIWLPDYHVDIDAKVLRGMEKDEASDLSYNPVTKTLFAVMGKNAFLVELTLTGDVLRKIPLVGWSNPEGVAVMNDGLIAITDERQHKLTIVKVNADTTTLNIADFPQYELGKSANQNKGFEGIAWDPQRQQLILGEERPPALYTWKSNGSDVLAGDKQPLSSRSLDMRNLSSLSIDPRTGHMLALSADSHMLLEVDDQGEQVSFMTLLGGMNGLKDTIPRAEGVALDEAGTLYMVSEPNLFYSFHRALRKH
>NZ_CP026568.1|WP_004407356.1|5620275_5621157_-|ABC-transporter-permease-subunit
MNRFRFSNLMLVLGLLFIYAPMVILVIYSFNASQLVTVWGGWSVKWYVGLLDNSQLMGSVMRSLEIACYTAVAAVALGTMAAFVLTRISRFKGRTFFGGLVTAPLVMPEVITGLSLLLLFVAMAQMIGWPQERGIMTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSLATFLVWFFTRRAENNRKRAIQQAIEESAADAWKQPDPRRAPAA
>NZ_CP026568.1|WP_003372160.1|5621153_5622074_-|ABC-transporter-permease-subunit
MKIRKIKRAFERIKPNGRQMVIGVPFLWLFLFFALPFLIVLKISFAEADVAIPPYTEIFSYADEKLQMVLNFANYTLLSGDDLYVSAYLGSLKMAFISTLLCLLIGYPMAYAIASARKDLQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWLGLIDAPLQILNTNLAVYIGVVYSYLPFMILPLYANLVKHDTSLLEAASDLGSSTFNSFWKITVPLSKNGVIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVIMLLVLIVPIILFNRSQAKELEGKA
>NZ_CP026568.1|WP_024640641.1|5622070_5623213_-|polyamine-ABC-transporter-ATP-binding-protein
MAVASGAYKKALEGGQQPKEVLVKIDRVTKKFDETIAVDDVSLQINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIYLDGVDITDMPPYERPINMMFQSYALFPHMTVADNIAFGLKQDKLGKPEIEARVAEMLKLVQMTQYAKRKPHQLSGGQRQRVALARSLAKKPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGWIAQIGSPIDIYETPTSRLVCEFIGSVNLFEGDVIEDMEAHALIRSPELERNIYVGHGVSTSVEDKHITYALRPEKLLITTEQPGFEYNWSRGKVHDIAYLGGHSVFYVELPGGKLVQSFVANAERQGARPTWGDEVYVWWEDDSGVVLRS
>NZ_CP026568.1|WP_054091592.1|5623268_5624363_-|polyamine-ABC-transporter-substrate-binding-protein
MSISILSKALLAAAGLTLTLGAQAKSTVHIYNWSDYIGKTTLTDFEATTGIKPMYDVFDSNETLEAKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNVEKVKAVLGVDKIDSWAVLFEPENIKKLSSCGVAFLDSADEMLPAVLNYLGLDPNSTKEADYKEAEAKLMAIRPYVTYFHSSKYITDLANGDICVAAGFSGDVFQAKARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKQASAFINYMLDPRVIAKVSDEVGYANPNPASGEFMDQKIRTDAAVYPPQEVLDRLFVNSELPLKVQRLMTRSWTKVKSGE
>NZ_CP026568.1|WP_054091591.1|5624534_5625632_-|polyamine-ABC-transporter-substrate-binding-protein
MKKFGKTLLALSLMGVVATAAQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSNETLEAKLFAGKSGYDIVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVSDPDNKYAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLDYPTDSQDKKQLAKAEELFMTIRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAAEAGGKVKVAYNIPKKGAGSFYDMVAIPKDAQNVEGAYKFMNFLMRPEVMAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGQ
>NZ_CP026568.1|WP_054091590.1|5625775_5627140_-|aspartate-aminotransferase-family-protein
MSANNPQTLEWQALSSEHHLAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQMRELPYYNLFFQTAHPPVLELAKAISDIAPEGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPNKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQPYWFGEGGDMTPDEFGIWAAEQLEKKILELGVENVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDILFAADEVICGFGRTSEWFGSDFYGLKPDMMTIAKGLTSGYVPMGGLIVRDEIVAVLNEGGDFNHGFTYSGHPVAAAVALENIRILREEKIVERVRSETAPYLQKRLRELSDHPLVGEVRGVGLLGAIELVKDKTTRERYTDKGAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISFAQIDELVEKARKCLDLTLAVLQG
>NZ_CP026568.1|WP_002555767.1|5627208_5628567_-|glutamine-synthetase
MSTNLDQLTDWLKEHKITEVECMMSDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDQNAVYLVPWAVEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADQGWQPIVAPEMEFYLTKRSDDPDYPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCELQNLDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALKHDVAATFMAKPMTGEPGSAMHLHQSIIDIETGKNIFSNEDGTMSELFLNHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAVPQNRRVENRLPGADANPYLAIAASLLCGFIGMVEGINPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGKKFIIGYVAVKRAEHENFKRVISSWEREFLLFAV
>NZ_CP026568.1|WP_003413528.1|5629161_5630538_+|glutamine-synthetase
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVAKFDEMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDRDGKNIFTSEDPEQNAALRHAIGGVLETLPAQMAFLCPNVNSYRRFGAQFYVPNSPTWGLDNRTVAVRVPTGTADAVRIEHRVAGADANPYLVMASVLAGVHHGLVNKVEPGAPVEGNSYEQHEQSLPNNLRDALRELDDNPVMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP026568.1|WP_011269275.1|5630966_5631641_+|TetR/AcrR-family-transcriptional-regulator
MPAAQPRATPMTRAATPRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEALTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQHGLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAMELGDRVYARSVQLHDEITPRMAEEGMRVFDAYLGLYLPVFLVKRKISPLQ
>NZ_CP026568.1|WP_080432853.1|5631672_5632752_-|RHS-repeat-associated-core-domain-containing-protein
MASLDPIMLCTYRYDPLDRLASSLPVGRADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRHVDGVVDTTLLATDQQRSVLRLVDEAGIEPVAYSPYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPIGFVDPSGHAPYNRLLRRALENARLKSLSRKDRISTRLLRVLGKRSEAPPSREGKPLPISPLASTSAASSPPPSTTSTLQAPDKGRPAMTTPDMTWEYRVKKAEEFHHPVSTAVPADFEGAKIYLKQHLKRLLDVENIILFYKSSRAVDTGNFIEAGPSQFYKAILLRDINTFKIYAAGMSRKHRKAIRNHR

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Crispr_ID: NZ_CP026568_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026568_7

5630623-5630698

Orphan

Consensus_repeat	Method
TCGTTCCTCACGCTCCAGCGTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026568_7

>merge|NZ_CP026568|7|5630623-5630698|CRISPRCasFinder
TCGTTCCTCACGCTCCAGCGTGGGAGCGATAATCATATGGCCGCACGCTTATCGTTCCGCACGCTCCAGCGTGGGA

>NZ_CP026568|7|6|5630623-5630698|CRISPRCasFinder
TCGTTCCTCACGCTCCAGCGTGGGA	GCGATAATCATATGGCCGCACGCTTA
TCGTTCCGCACGCTCCAGCGTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026568.1\|WP_054091591.1\|5624534_5625632_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP026568.1\|WP_060400257.1\|5632980_5634066_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP026568.1\|WP_004407356.1\|5620275_5621157_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_CP026568.1\|WP_011269275.1\|5630966_5631641_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP026568.1\|WP_004407339.1\|5636663_5637461_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	unknown	unknown	gnl\|CDD\|183100
NZ_CP026568.1\|WP_002555767.1\|5627208_5628567_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP026568.1\|WP_054092642.1\|5635854_5636667_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
NZ_CP026568.1\|WP_099081513.1\|5638848_5640224_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP026568.1\|WP_024660157.1\|5614987_5615929_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP026568.1\|WP_054091590.1\|5625775_5627140_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP026568.1\|WP_003318285.1\|5640431_5641070_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239314
NZ_CP026568.1\|WP_011269280.1\|5641238_5642585_-\|outer-membrane-porin,-OprD-family	unknown	unknown	gnl\|CDD\|335381
NZ_CP026568.1\|WP_024640641.1\|5622070_5623213_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP026568.1\|WP_054091643.1\|5616199_5618587_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|376618
NZ_CP026568.1\|WP_054091592.1\|5623268_5624363_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP026568.1\|WP_002555770.1\|5635612_5635828_-\|transporter	unknown	unknown	gnl\|CDD\|226113
NZ_CP026568.1\|WP_080432853.1\|5631672_5632752_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP026568.1\|WP_054092643.1\|5637489_5638455_-\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270275
NZ_CP026568.1\|WP_003413528.1\|5629161_5630538_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP026568.1\|WP_003372160.1\|5621153_5622074_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646

Protein	Function_ID	Function_description	E-value
NZ_CP026568.1\|WP_054091591.1\|5624534_5625632_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP026568.1\|WP_060400257.1\|5632980_5634066_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	6.84115e-30
NZ_CP026568.1\|WP_004407356.1\|5620275_5621157_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	2.58132e-118
NZ_CP026568.1\|WP_011269275.1\|5630966_5631641_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.62324e-09
NZ_CP026568.1\|WP_004407339.1\|5636663_5637461_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	1.60766e-137
NZ_CP026568.1\|WP_002555767.1\|5627208_5628567_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.38043e-153
NZ_CP026568.1\|WP_054092642.1\|5635854_5636667_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	4.7759e-172
NZ_CP026568.1\|WP_099081513.1\|5638848_5640224_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.19802e-51
NZ_CP026568.1\|WP_024660157.1\|5614987_5615929_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.89777e-34
NZ_CP026568.1\|WP_054091590.1\|5625775_5627140_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP026568.1\|WP_003318285.1\|5640431_5641070_-\|peroxiredoxin	gnl\|CDD\|239314	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins.	6.31398e-131
NZ_CP026568.1\|WP_011269280.1\|5641238_5642585_-\|outer-membrane-porin,-OprD-family	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	9.41389e-140
NZ_CP026568.1\|WP_024640641.1\|5622070_5623213_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP026568.1\|WP_054091643.1\|5616199_5618587_+\|penicillin-acylase-family-protein	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	0
NZ_CP026568.1\|WP_054091592.1\|5623268_5624363_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP026568.1\|WP_002555770.1\|5635612_5635828_-\|transporter	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	1.14695e-16
NZ_CP026568.1\|WP_080432853.1\|5631672_5632752_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.69564e-30
NZ_CP026568.1\|WP_054092643.1\|5637489_5638455_-\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.17837e-144
NZ_CP026568.1\|WP_003413528.1\|5629161_5630538_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.39638e-154
NZ_CP026568.1\|WP_003372160.1\|5621153_5622074_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	9.92225e-152

>NZ_CP026568.1|WP_003413528.1|5629161_5630538_+|glutamine-synthetase
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVAKFDEMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDRDGKNIFTSEDPEQNAALRHAIGGVLETLPAQMAFLCPNVNSYRRFGAQFYVPNSPTWGLDNRTVAVRVPTGTADAVRIEHRVAGADANPYLVMASVLAGVHHGLVNKVEPGAPVEGNSYEQHEQSLPNNLRDALRELDDNPVMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP026568.1|WP_002555767.1|5627208_5628567_-|glutamine-synthetase
MSTNLDQLTDWLKEHKITEVECMMSDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDQNAVYLVPWAVEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADQGWQPIVAPEMEFYLTKRSDDPDYPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCELQNLDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALKHDVAATFMAKPMTGEPGSAMHLHQSIIDIETGKNIFSNEDGTMSELFLNHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAVPQNRRVENRLPGADANPYLAIAASLLCGFIGMVEGINPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGKKFIIGYVAVKRAEHENFKRVISSWEREFLLFAV
>NZ_CP026568.1|WP_054091590.1|5625775_5627140_-|aspartate-aminotransferase-family-protein
MSANNPQTLEWQALSSEHHLAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQMRELPYYNLFFQTAHPPVLELAKAISDIAPEGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPNKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQPYWFGEGGDMTPDEFGIWAAEQLEKKILELGVENVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDILFAADEVICGFGRTSEWFGSDFYGLKPDMMTIAKGLTSGYVPMGGLIVRDEIVAVLNEGGDFNHGFTYSGHPVAAAVALENIRILREEKIVERVRSETAPYLQKRLRELSDHPLVGEVRGVGLLGAIELVKDKTTRERYTDKGAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISFAQIDELVEKARKCLDLTLAVLQG
>NZ_CP026568.1|WP_054091591.1|5624534_5625632_-|polyamine-ABC-transporter-substrate-binding-protein
MKKFGKTLLALSLMGVVATAAQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSNETLEAKLFAGKSGYDIVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVSDPDNKYAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLDYPTDSQDKKQLAKAEELFMTIRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAAEAGGKVKVAYNIPKKGAGSFYDMVAIPKDAQNVEGAYKFMNFLMRPEVMAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGQ
>NZ_CP026568.1|WP_054091592.1|5623268_5624363_-|polyamine-ABC-transporter-substrate-binding-protein
MSISILSKALLAAAGLTLTLGAQAKSTVHIYNWSDYIGKTTLTDFEATTGIKPMYDVFDSNETLEAKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNVEKVKAVLGVDKIDSWAVLFEPENIKKLSSCGVAFLDSADEMLPAVLNYLGLDPNSTKEADYKEAEAKLMAIRPYVTYFHSSKYITDLANGDICVAAGFSGDVFQAKARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKQASAFINYMLDPRVIAKVSDEVGYANPNPASGEFMDQKIRTDAAVYPPQEVLDRLFVNSELPLKVQRLMTRSWTKVKSGE
>NZ_CP026568.1|WP_024640641.1|5622070_5623213_-|polyamine-ABC-transporter-ATP-binding-protein
MAVASGAYKKALEGGQQPKEVLVKIDRVTKKFDETIAVDDVSLQINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIYLDGVDITDMPPYERPINMMFQSYALFPHMTVADNIAFGLKQDKLGKPEIEARVAEMLKLVQMTQYAKRKPHQLSGGQRQRVALARSLAKKPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGWIAQIGSPIDIYETPTSRLVCEFIGSVNLFEGDVIEDMEAHALIRSPELERNIYVGHGVSTSVEDKHITYALRPEKLLITTEQPGFEYNWSRGKVHDIAYLGGHSVFYVELPGGKLVQSFVANAERQGARPTWGDEVYVWWEDDSGVVLRS
>NZ_CP026568.1|WP_003372160.1|5621153_5622074_-|ABC-transporter-permease-subunit
MKIRKIKRAFERIKPNGRQMVIGVPFLWLFLFFALPFLIVLKISFAEADVAIPPYTEIFSYADEKLQMVLNFANYTLLSGDDLYVSAYLGSLKMAFISTLLCLLIGYPMAYAIASARKDLQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWLGLIDAPLQILNTNLAVYIGVVYSYLPFMILPLYANLVKHDTSLLEAASDLGSSTFNSFWKITVPLSKNGVIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVIMLLVLIVPIILFNRSQAKELEGKA
>NZ_CP026568.1|WP_004407356.1|5620275_5621157_-|ABC-transporter-permease-subunit
MNRFRFSNLMLVLGLLFIYAPMVILVIYSFNASQLVTVWGGWSVKWYVGLLDNSQLMGSVMRSLEIACYTAVAAVALGTMAAFVLTRISRFKGRTFFGGLVTAPLVMPEVITGLSLLLLFVAMAQMIGWPQERGIMTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSLATFLVWFFTRRAENNRKRAIQQAIEESAADAWKQPDPRRAPAA
>NZ_CP026568.1|WP_054091643.1|5616199_5618587_+|penicillin-acylase-family-protein
MKRSLFILAIIIALLAGGAGWYVNSKLPVRDGEIAMSRLQAPVTLRYDERGVPHIRAENEADLYRALGYAHAQDRLFQMEMLRRLARGELAEVLGPNLLETDKLFRSLRIREHADAYVARQDKNTPTWKALEAYIDGINQYQDTHARPMEFDALGIPRRRFTPEDTVSIAGYLAYSFAAAFRTEPLLTYVRDQLGPEYLKVFDLDWHPDGVLDSKPALADADWKGLNQLAQLSHKALEDAGLPQFEGSNAWVISGSRTQSGKPILAGDPHIRFSVPSVWYEAQLSAPGFELYGHFPALNPFALLGHNMDFGWSLTMFQNDDVDLIAEKTNPDNPNQVWYHGQWVDMKRTEQQIAIKGQAPVTLTLLESPHGPIVNNVMGKNAGQAPIAMWWSFLVSANPVLDGFYEANRADTLDKMRSAAEKIQSPGLNIVWANAKGDIGWWAAAQLPIRPQGVNPTFILDGSTAQADKLGFYPFSANPHEENPARGYIVSANFQPLSPTGMQIPGYYNPAERGQELNRQLSDASVKWDLAASKALQLDTQTDYAPSILRPLIPVLRSVVSDPDELALVERLASWKGDYPVDSVGATLFNQFLFDLTEETFHDELGDAMFETLLSSRVMDAALPRLAADADSPWWNNRNSPHEESRANTVKVAWRASVSHLRSLYGTNPDEWVWGKAHTLTQGHPLGSQKPLDMIFNVGPYAAPGTHEVPNNLSSSIRPAPWPVGYGPSTRRLIDFADPAHSLGINPVGQSGVPFDKHYSDQAKAFVNGEYLPQRFSEKDVAEHTEGVLRLVQGA
>NZ_CP026568.1|WP_024660157.1|5614987_5615929_-|alpha/beta-hydrolase
MSATFDPDNLRASLLPLSVIDPLSMEGLAYQRFYGLAGLCGENVIRSWLGRLDVAGYEVVGQVWLPDSPVATLFLFHGFYDHMGLYRHVIEWALEQRFAVIACDLPGHGLSSGSRACINDFAEYQLVLQRLLLEAEGLGLPHPWHLCGQSMGGAIVTDHLLHQGADSPAQGEVILLAPLVRPRAWGWSRLSYHLLRPFVNGIARRFTENSNAPAFLPFLMADPLQPLRLPTAWVGALGQWIVRVESAPRSLRSPLIIQGEADMTVDWSHNLAILKDKFSQPQILMLGHARHHLANETPELRARYFDFLKGRLR
>NZ_CP026568.1|WP_011269275.1|5630966_5631641_+|TetR/AcrR-family-transcriptional-regulator
MPAAQPRATPMTRAATPRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEALTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQHGLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAMELGDRVYARSVQLHDEITPRMAEEGMRVFDAYLGLYLPVFLVKRKISPLQ
>NZ_CP026568.1|WP_080432853.1|5631672_5632752_-|RHS-repeat-associated-core-domain-containing-protein
MASLDPIMLCTYRYDPLDRLASSLPVGRADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRHVDGVVDTTLLATDQQRSVLRLVDEAGIEPVAYSPYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPIGFVDPSGHAPYNRLLRRALENARLKSLSRKDRISTRLLRVLGKRSEAPPSREGKPLPISPLASTSAASSPPPSTTSTLQAPDKGRPAMTTPDMTWEYRVKKAEEFHHPVSTAVPADFEGAKIYLKQHLKRLLDVENIILFYKSSRAVDTGNFIEAGPSQFYKAILLRDINTFKIYAAGMSRKHRKAIRNHR
>NZ_CP026568.1|WP_060400257.1|5632980_5634066_-|RHS-repeat-associated-core-domain-containing-protein
MTSPDQTVLCKYRYDPLDRLASSSPAGQADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRRVEGAIETTLLATDQQRSVLRLVDKSGVEPVAYSAYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPVGVVDPSGHMPFSILIQAADMIEKFGPQAATLIAQRALQGVSPAARVLGGKHTPAAVPSLVSKKASKLPSASASASTSTSSAKSVSSRRRTEQRRTLELKRKNLINGLSTRLPIDESSAKRRYERFEGRVRDAEYLIEHYTKNPERVKHSIINPSQSRELFGAKLVNAETNFNAYRKKYIEKFGEYVRDPPKDK
>NZ_CP026568.1|WP_002555770.1|5635612_5635828_-|transporter
MTIKAINVRNQFKGTIKEIVHGDVLSEIDVQTASGVVTSVITTRSVKELELVVGSEVIAFVKSTEVSIAKL
>NZ_CP026568.1|WP_054092642.1|5635854_5636667_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MTSLKQQPPHLLRGIPLAVRKLKKAFGAREVLKDIDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDKPTQGQLLAGSAPLDDAREDTRLMFQEARLLPWKKIIDNVGLGLSGDWRTQALEALEAVGLAERANEWPAALSGGQKQRVALARALIHKPRLLLLDEPLGALDALTRIEMQQLIEKLWGQYGFTVLLVTHDVSEAVAIADRVILIEEGQIGLDLLVDLPRPRVRGSHRLAALEAEVLNRVLALPGSPPDPEPFSPLPTQLRWAN
>NZ_CP026568.1|WP_004407339.1|5636663_5637461_-|aliphatic-sulfonate-ABC-transporter-permease-SsuC
MSLSASQRIVHRLAPWALPVLLLAVWQLSVSAGWLSTRILPAPSAVIEAGINLVASGEIWTHLAISGWRAGIGFAIGGGIGLALGFITGLSKWGERLLDSSVQMIRNVPHLALIPLVILWFGIDETAKIFLVALGTLFPIYLNTYHGIRNIDPALVEMSRSYGLSGFSLFRHVILPGAMPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAIVLYAVLGKLADLAARGLERVCLRWHPAYQTSKGGAA
>NZ_CP026568.1|WP_054092643.1|5637489_5638455_-|sulfonate-ABC-transporter-substrate-binding-protein
MRTVILRRGLVALFATAVALGAVTQAQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQGVKVQWTEFPGGPQLLEGLNVGSIDFGVTGETPPVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKGKKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPPADARAAFERGSVDAWVIWDPYQAAAEKQLQARTLKDGTGIVDNHQFYLATKPYAQKNPKVIQALVEEVRAVGEWSKANPDEVTQQVAPLLGLPADITLTSVKRQGYGAQFLTPPVVAAQQKIADTFYQLKLIPKPLSIADVVWTPPAAVAQAQ
>NZ_CP026568.1|WP_099081513.1|5638848_5640224_+|IS3-family-transposase
MGKYTEQAKLAAVKEYCAGKAGLRDVARRHDVDFSCLRQWVAAYQIHGPAALKEKRRQRYSDEFKLAVLKRMHDERLSLRQTAALFDIRQFGIINLWQRLFDEGALNASSKPPKKVGRPRKMTTPLPPVNSAPINDESRSRDELLAEVKQLRMEVDYPKKARCLGSEEATNSAAEKAQIVMELRPLHSLDGLLKFAGLARSTFYYQQKVLLADDKYAGLKDLIQATFYEHKGRYGYRRITAALRRAGHLVNHKTVQKLMGQLGLKSLIRVKKYRSYKGETGKAAPNLLKRDFKAQYPNQKWATDVTEFKVGGQKLYLSPIMDLYSGEIISYAIARRPLYSMVDEMLEGAFKRLGPHEKPILHSDQGWQYRMPIYQRLLNENSIAASMSRKGNCYDNAAIESFFSTLKSEFFYLNKFNDLDELQAGIEEYIEYYNHSRIKLKLNGLSPVEYRMQAAKAA
>NZ_CP026568.1|WP_003318285.1|5640431_5641070_-|peroxiredoxin
MTLRLGDIAPDFEQESSEGRIRFHEWLGDSWGVLFSHPADFTPVCTTELGFTAKLKDEFAKRGVKAIALSVDPVDSHIKWIDDINTTQNTLVNFPILADADRKVSDLYDLIHPNANDTLTVRSLFVIDPNKKVRLTITYPASTGRNFHEILRVIDSLQLTDNYKVATPANWVDGDDVVIVPSIKDEAEIKQRFPKGYKAVTPYLRLTPQPNR
>NZ_CP026568.1|WP_011269280.1|5641238_5642585_-|outer-membrane-porin,-OprD-family
MKKSTLALAVTVGVLAQQASAAGFLEDSKASVSSRTLYFNNDLREGFRASDQRETSTGLKFDYLSGFTQGTVGFGLDAQAVMGLHLGGGIEHHNANTANTVVPTDTDGSSVSDWSRVGANAKMRFSKTELKVGNALAPNLPILVSNDGRLLPQAFEGGILTSKDLDNVTFTAGQLNKSIGRASSNWTDLSVAGATQTADQFRFAGADWKVTKDLTLQYYYANLEDFYKQHFLGLVHVYQIDNDQSFKTDLRYFNSSADGKNSEAAAGYRFNNNGGYASHTGEVDNQTWSAMFTYALGGHSFMVGHQQVGDSGGMVYLGQGNVVDGRGRPEGNGGSSFYLFTDSMINGFNRAGENTTFGQYSYDFAKVGVPGLKAAIAYLSGDDIRDVNRNLGSHSEWERDMRVDYVIQSGPLKGFGTTVRHGSFRGDSATTADTDQTRILFNYTYSFM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP026568_2	2.3\|1115297\|56\|NZ_CP026568\|PILER-CR	1115297-1115352	56	NZ_CP026568.1	1962270-1962325	2	0.964
NZ_CP026568_2	2.3\|1115297\|56\|NZ_CP026568\|PILER-CR	1115297-1115352	56	NZ_CP026568.1	4250333-4250388	2	0.964
NZ_CP026568_2	2.3\|1115297\|56\|NZ_CP026568\|PILER-CR	1115297-1115352	56	NZ_CP026568.1	5537900-5537955	2	0.964

1. spacer 2.3|1115297|56|NZ_CP026568|PILER-CR matches to position: 1962270-1962325, mismatch: 2, identity: 0.964

tatcgttccgcacgctccagcgtgggaatgcagttctcgacgctctgcgtcgtcaa	CRISPR spacer
tatcgttccccacgctccagcgtgggaatgcagttcacgacgctctgcgtcgtcaa	Protospacer
********* ************************** *******************

2. spacer 2.3|1115297|56|NZ_CP026568|PILER-CR matches to position: 4250333-4250388, mismatch: 2, identity: 0.964

tatcgttccgcacgctccagcgtgggaatgcagttctcgacgctctgcgtcgtcaa	CRISPR spacer
tatcgttcctcacgctccagcgtgggaatgcaggtctcgacgctctgcgtcgtcaa	Protospacer
********* *********************** **********************

3. spacer 2.3|1115297|56|NZ_CP026568|PILER-CR matches to position: 5537900-5537955, mismatch: 2, identity: 0.964

tatcgttccgcacgctccagcgtgggaatgcagttctcgacgctctgcgtcgtcaa	CRISPR spacer
tatcgttcctcacgctccagcgtgggaacgcagttctcgacgctctgcgtcgtcaa	Protospacer
********* ******************.***************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP026568_3	3.1\|1264145\|28\|NZ_CP026568\|CRISPRCasFinder	1264145-1264172	28	NC_014819	Asticcacaulis excentricus CB 48 plasmid pASTEX02, complete sequence	77654-77681	5	0.821
NZ_CP026568_3	3.1\|1264145\|28\|NZ_CP026568\|CRISPRCasFinder	1264145-1264172	28	MN694357	Marine virus AFVG_250M880, complete genome	39781-39808	6	0.786
NZ_CP026568_3	3.1\|1264145\|28\|NZ_CP026568\|CRISPRCasFinder	1264145-1264172	28	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	274549-274576	7	0.75

1. spacer 3.1|1264145|28|NZ_CP026568|CRISPRCasFinder matches to NC_014819 (Asticcacaulis excentricus CB 48 plasmid pASTEX02, complete sequence) position: , mismatch: 5, identity: 0.821

cggcacgatagtcaaagaaaaaccgccg	CRISPR spacer
caggaggatagacaaagaaaaaccgcca	Protospacer
*.* * ***** ***************.

2. spacer 3.1|1264145|28|NZ_CP026568|CRISPRCasFinder matches to MN694357 (Marine virus AFVG_250M880, complete genome) position: , mismatch: 6, identity: 0.786

cggcacgatagtcaaagaaaaaccgccg	CRISPR spacer
ctaaacgatagtcaaagaaaacacgcca	Protospacer
* . *****************  ****.

3. spacer 3.1|1264145|28|NZ_CP026568|CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 7, identity: 0.75

cggcacgatagtcaaagaaaaaccgccg	CRISPR spacer
aagcacgatactcaacgaaaaaccggac	Protospacer
 .******** **** *********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2098598 : 2165344

uncultured_Caudovirales_phage(66.67%)

holin,tRNA,portal,head,terminase,tail,plate,integrase,capsid,protease,transposase

attL 2099610:2099625|attR 2140091:2140106

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024642142.1\|2098598_2098868_-	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	2.5e-20	59.1
WP_080377228.1\|2098864_2099530_-	hypothetical protein	Q5QF30	Pseudomonas_virus	1.9e-42	47.2
2099610:2099625	attL	NA	NA	NA	NA
WP_054092473.1\|2100009_2100513_-	hypothetical protein	NA	NA	NA	NA
WP_060401992.1\|2100585_2101395_-	DUF2303 family protein	I3PUY7	Vibrio_phage	1.6e-43	38.4
WP_005619115.1\|2101438_2101789_-	hypothetical protein	A0A0P0ZGH3	Escherichia_phage	7.4e-17	46.2
WP_054092475.1\|2101838_2102081_-	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	7.6e-21	62.5
WP_054092476.1\|2102077_2102452_-	hypothetical protein	A0A2H4J897	uncultured_Caudovirales_phage	3.4e-44	71.8
WP_054092477.1\|2102448_2102685_-	hypothetical protein	A0A2H4JBX5	uncultured_Caudovirales_phage	6.3e-20	60.8
WP_054092478.1\|2102734_2103307_-	deoxynucleotide monophosphate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	1.0e-63	63.0
WP_054092479.1\|2103591_2104272_-	helix-turn-helix domain-containing protein	A0A2H4J8I0	uncultured_Caudovirales_phage	1.0e-38	54.2
WP_054092513.1\|2104371_2104569_+	hypothetical protein	NA	NA	NA	NA
WP_054092480.1\|2104795_2105284_+	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	2.0e-36	59.4
WP_053479715.1\|2105276_2105483_+	transcriptional regulator	A0A2H4JDJ0	uncultured_Caudovirales_phage	9.0e-15	55.9
WP_054092481.1\|2105479_2108173_+	DNA primase	A0A2H4JF22	uncultured_Caudovirales_phage	0.0e+00	76.2
WP_054092482.1\|2108501_2108984_+	hypothetical protein	NA	NA	NA	NA
WP_054092483.1\|2109235_2109559_+\|holin	phage holin, lambda family	A0A1V0DYG4	Shewanella_phage	2.3e-09	39.0
WP_054092484.1\|2109555_2109942_+	hypothetical protein	NA	NA	NA	NA
WP_080377229.1\|2109943_2110090_+	hypothetical protein	NA	NA	NA	NA
WP_005896780.1\|2110315_2110885_+	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	8.5e-63	64.8
WP_054092486.1\|2110889_2112911_+\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	79.2
WP_080377225.1\|2112912_2114013_+	hypothetical protein	A0A2H4J898	uncultured_Caudovirales_phage	6.0e-89	50.3
WP_019333399.1\|2113967_2114174_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	1.2e-22	77.9
WP_080377226.1\|2114170_2115652_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	9.5e-223	77.6
WP_054092487.1\|2115648_2116800_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	3.0e-131	66.6
WP_054080294.1\|2116796_2117141_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	5.0e-34	69.3
WP_054092488.1\|2117228_2118224_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	8.8e-156	80.7
WP_054092489.1\|2118226_2118541_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	9.8e-29	56.3
WP_054092490.1\|2118537_2119194_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	2.5e-74	65.2
WP_054092491.1\|2119186_2119714_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.6e-50	55.4
WP_054092492.1\|2119713_2120298_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	7.4e-54	64.1
WP_054092493.1\|2120341_2120620_+	hypothetical protein	NA	NA	NA	NA
WP_004407126.1\|2120623_2120950_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.6e-34	64.8
WP_054092494.1\|2120946_2121828_+\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	1.5e-103	66.4
WP_054092495.1\|2121829_2122435_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	2.9e-77	68.5
WP_054092496.1\|2122431_2124054_+\|tail	phage tail protein	A4PE45	Ralstonia_virus	1.9e-67	42.6
WP_054092497.1\|2124054_2124486_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	8.8e-28	45.4
WP_054092498.1\|2124561_2125725_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	4.9e-182	81.9
WP_054092499.1\|2125737_2126247_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	7.8e-68	74.9
WP_044310015.1\|2126263_2126566_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_054092500.1\|2126704_2129440_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	4.5e-101	41.4
WP_080377230.1\|2129530_2130295_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	4.3e-94	66.4
WP_002551934.1\|2130269_2130476_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.5e-22	73.1
WP_054092502.1\|2130572_2131616_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	5.2e-143	75.9
WP_054092503.1\|2131654_2132200_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	6.9e-70	72.8
WP_054092504.1\|2132403_2133198_+	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	1.4e-100	66.9
WP_005758234.1\|2133315_2134179_-	type II restriction endonuclease NgoMIV	NA	NA	NA	NA
WP_054083991.1\|2134178_2135135_-	DNA cytosine methyltransferase	A0A191SB20	Nostoc_phage	2.0e-19	27.2
WP_054092505.1\|2135354_2136485_-\|integrase	tyrosine-type recombinase/integrase	A0A2K8I325	Pseudomonas_phage	2.0e-148	69.4
WP_054092506.1\|2136586_2137606_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_080269082.1\|2137686_2139273_+	glucan biosynthesis protein D	NA	NA	NA	NA
WP_054092507.1\|2140739_2141171_+	universal stress protein	NA	NA	NA	NA
2140091:2140106	attR	NA	NA	NA	NA
WP_003346434.1\|2141171_2141636_-	response regulator	W8CYM9	Bacillus_phage	7.5e-09	31.1
WP_024660681.1\|2141632_2143972_-	PAS domain S-box protein	Q8QKV7	Ectocarpus_siliculosus_virus	1.2e-25	26.1
WP_011267334.1\|2143968_2144637_-	response regulator transcription factor	NA	NA	NA	NA
WP_024660682.1\|2144633_2145818_-	sensor histidine kinase	NA	NA	NA	NA
WP_003406965.1\|2146010_2146535_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_003319375.1\|2146613_2147150_-	RNA polymerase factor sigma-70	NA	NA	NA	NA
WP_011267336.1\|2147466_2148225_+	thioesterase	NA	NA	NA	NA
WP_054092508.1\|2148320_2161331_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	6.7e-155	26.7
WP_054092509.1\|2161495_2162908_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	5.8e-20	24.3
WP_003304661.1\|2162989_2163208_+	MbtH family protein	NA	NA	NA	NA
WP_143518411.1\|2163135_2163348_-	DUF1534 domain-containing protein	NA	NA	NA	NA
WP_099081513.1\|2163968_2165344_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	7.8e-78	53.2

DBSCAN-SWA_2

3654771 : 3665227

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002553978.1\|3654771_3655443_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	8.7e-107	92.8
WP_011268260.1\|3655794_3656703_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011268261.1\|3656688_3657468_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_054092131.1\|3657484_3658786_-	MFS transporter	Q6JIH2	Burkholderia_virus	5.3e-60	36.0
WP_011268263.1\|3659020_3659413_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.7e-57	82.3
WP_054092132.1\|3659414_3659777_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.3e-35	60.8
WP_024652456.1\|3659776_3660076_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.6e-28	61.6
WP_003317943.1\|3660072_3660408_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.2e-43	78.4
WP_024660442.1\|3660404_3661406_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.0e-164	84.5
WP_054092133.1\|3661502_3662501_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003405073.1\|3662551_3663946_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003317946.1\|3663946_3665227_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	45.8

DBSCAN-SWA_3

5300067 : 5333571

Pseudomonas_phage(57.69%)

tRNA,lysis,tail,bacteriocin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024639964.1\|5300067_5301279_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_011103218.1\|5301382_5301484_+	hypothetical protein	NA	NA	NA	NA
WP_003401947.1\|5301480_5302908_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_003401948.1\|5302911_5304006_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|5304068_5304419_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_054091865.1\|5304620_5305655_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003401951.1\|5305788_5306217_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_024640876.1\|5306302_5307217_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_024640875.1\|5307273_5308050_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003316306.1\|5308153_5308492_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_011269103.1\|5308613_5309261_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003316303.1\|5309330_5310125_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003401957.1\|5310367_5310790_-	OsmC family protein	NA	NA	NA	NA
WP_003401959.1\|5310991_5311636_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_054091864.1\|5311647_5312343_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_003401968.1\|5312377_5313214_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.3e-69	56.5
WP_024640873.1\|5313210_5314260_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.2e-110	57.7
WP_003394873.1\|5314281_5314881_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
WP_080377148.1\|5315292_5315790_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	4.5e-28	48.4
WP_054091862.1\|5315801_5316347_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	1.2e-69	73.3
WP_032656591.1\|5316457_5317003_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_054091861.1\|5317013_5318888_-	hypothetical protein	A0A077K818	Ralstonia_phage	1.7e-38	53.7
WP_003401992.1\|5318898_5319498_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.9e-84	71.9
WP_054091860.1\|5319485_5320526_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	1.2e-131	69.8
WP_024652217.1\|5320515_5320914_-	hypothetical protein	B5TK74	Pseudomonas_phage	4.4e-42	62.9
WP_003372720.1\|5320910_5321423_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.4e-64	73.8
WP_003401994.1\|5321419_5322547_-	hypothetical protein	B5TK72	Pseudomonas_phage	2.7e-113	60.2
WP_054091859.1\|5322550_5323975_-	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	4.0e-109	46.0
WP_054091858.1\|5323971_5326131_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	1.3e-71	40.2
WP_103360398.1\|5326130_5326337_-	hypothetical protein	NA	NA	NA	NA
WP_003316280.1\|5326261_5326558_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	76.0
WP_011269114.1\|5326554_5326902_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	5.0e-42	70.4
WP_054091857.1\|5326962_5328459_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	1.1e-234	80.5
WP_003401999.1\|5328477_5328666_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.8e-14	73.5
WP_011269116.1\|5328662_5329253_-	hypothetical protein	B5TK65	Pseudomonas_phage	2.4e-52	52.6
WP_024639982.1\|5329298_5329637_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	9.0e-20	59.2
WP_003411734.1\|5329617_5330007_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_054091856.1\|5330241_5331093_-\|bacteriocin	putidacin L1 family lectin-like bacteriocin	NA	NA	NA	NA
WP_054091855.1\|5331092_5331287_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	8.8e-12	84.2
WP_011269120.1\|5331559_5332003_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	4.6e-24	45.8
WP_011269121.1\|5332114_5332804_+	helix-turn-helix domain-containing protein	Q8HAG7	Salmonella_phage	1.8e-51	47.9
WP_003402012.1\|5332958_5333207_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_004415824.1\|5333304_5333571_+	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	2.1e-16	51.2

DBSCAN-SWA_4

5401431 : 5457259

Bacillus_virus(20.0%)

holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104722995.1\|5401431_5402807_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-76	52.8
WP_011269169.1\|5403399_5405205_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_003419817.1\|5405538_5405835_-	hypothetical protein	NA	NA	NA	NA
WP_011269170.1\|5405988_5406669_-	dethiobiotin synthase	NA	NA	NA	NA
WP_054091974.1\|5406686_5407502_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_054091975.1\|5407494_5408226_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_054091976.1\|5408218_5409409_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_003372416.1\|5409473_5410532_-	biotin synthase BioB	NA	NA	NA	NA
WP_003402142.1\|5410622_5411357_+	ComF family protein	NA	NA	NA	NA
WP_054091977.1\|5411495_5412260_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_080377155.1\|5412338_5414258_+	PhoX family phosphatase	NA	NA	NA	NA
WP_154583777.1\|5414207_5414381_-	hypothetical protein	NA	NA	NA	NA
WP_003402149.1\|5414526_5415360_-	phosphodiesterase	NA	NA	NA	NA
WP_054091978.1\|5415385_5416417_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-27	35.0
WP_003316181.1\|5416413_5417208_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_003402154.1\|5417204_5418074_-	ABC transporter permease	NA	NA	NA	NA
WP_054091979.1\|5418073_5419075_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_011269176.1\|5419058_5420078_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011269177.1\|5420271_5421246_+	serine/threonine protein kinase	NA	NA	NA	NA
WP_003402166.1\|5421584_5422472_+	EamA family transporter RarD	NA	NA	NA	NA
WP_011269179.1\|5422669_5423212_-	glycine cleavage system protein R	NA	NA	NA	NA
WP_054091980.1\|5423534_5425712_+	malate synthase G	NA	NA	NA	NA
WP_003402175.1\|5425778_5426225_-	response regulator	A0A220YL79	Alteromonas_virus	2.2e-05	29.6
WP_024650764.1\|5426456_5428391_+	CBS domain-containing protein	NA	NA	NA	NA
WP_024641619.1\|5428387_5429101_+	3'-5' exonuclease	A0A1P8DIX6	Virus_Rctr197k	3.5e-05	28.2
WP_003316170.1\|5429126_5429429_-	cell division protein ZapA	NA	NA	NA	NA
WP_003402183.1\|5429425_5429659_-	hypothetical protein	NA	NA	NA	NA
WP_011269183.1\|5430070_5431696_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.6e-68	44.6
WP_011269184.1\|5432104_5432563_-\|transposase	transposase	NA	NA	NA	NA
WP_003402189.1\|5432689_5433793_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011269185.1\|5434576_5435524_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002555599.1\|5435591_5436437_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011269186.1\|5436433_5437612_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-25	36.4
WP_054091693.1\|5437870_5439124_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.9e-102	54.0
WP_003402197.1\|5439141_5440392_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_003316160.1\|5440407_5440704_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_003402200.1\|5440700_5443721_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_003402202.1\|5443771_5444404_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_054091694.1\|5444609_5445467_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_003316157.1\|5445582_5446782_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	27.7
WP_054091695.1\|5446813_5447860_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	1.1e-26	42.3
WP_003402209.1\|5454007_5454571_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_050601904.1\|5454550_5455618_-	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	1.5e-28	38.3
WP_024641133.1\|5455668_5456562_-	acyltransferase	NA	NA	NA	NA
WP_024641132.1\|5456755_5457259_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP026568

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection