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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP025394 Kitasatospora sp. MMS16-BH015 chromosome, complete genome 16 crisprs DEDDh,csa3,WYL,cas4,PD-DExK,casR,cas3,DinG,cas14j 0 4 4 0

Results visualization

1. NZ_CP025394
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_1 383511-383591 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_2 474315-474397 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_3 1319401-1319558 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_4 1767061-1767255 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_5 1935371-1935456 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_6 2810742-2810903 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_7 2876817-2876915 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_8 2882371-2882444 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_9 3015872-3015970 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_10 4584278-4584376 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_11 5615988-5616084 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_12 5925049-5925146 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_13 6254579-6254665 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_14 6325007-6325112 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_15 7049543-7049628 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025394_16 7449015-7449107 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP025394_4 4.3|1767169|21|NZ_CP025394|CRISPRCasFinder 1767169-1767189 21 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 5159291-5159311 2 0.905
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 1166725-1166751 4 0.852
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 965654-965680 4 0.852
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 3402564-3402590 4 0.852
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 NZ_LR594691 Variovorax sp. WDL1 plasmid 3 205997-206023 5 0.815
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 853779-853805 5 0.815
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 MN234174 Mycobacterium phage Efra2, complete genome 56045-56071 5 0.815
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 MN234165 Mycobacterium phage Yunkel11, complete genome 55727-55753 5 0.815
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 MF140416 Mycobacterium phage LastHope, complete genome 55838-55864 5 0.815
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 NZ_CP022193 Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence 53318-53344 5 0.815
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 NZ_AP022319 Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence 1363516-1363542 5 0.815
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP030864 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence 256600-256632 5 0.848
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 NZ_LR134468 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence 80648-80674 6 0.778
NZ_CP025394_1 1.1|383538|27|NZ_CP025394|CRISPRCasFinder 383538-383564 27 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 742719-742745 6 0.778
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP012399 Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence 196479-196511 7 0.788
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 1071231-1071263 7 0.788
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NC_008759 Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence 145880-145912 8 0.758
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP021216 Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence 76874-76906 8 0.758
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP051470 Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence 28215-28247 9 0.727
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP015290 Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence 12586-12618 9 0.727
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP030273 Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence 58481-58513 9 0.727
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 CP047033 Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence 52152-52184 9 0.727
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP047039 Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence 52136-52168 9 0.727
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP015213 Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence 95951-95983 9 0.727
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_LR134460 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence 11243-11275 9 0.727
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NC_011960 Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence 81313-81345 9 0.727
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 CP036421 Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence 36907-36939 9 0.727
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NC_009040 Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence 12807-12839 9 0.727
NZ_CP025394_2 2.1|474339|35|NZ_CP025394|CRISPRCasFinder 474339-474373 35 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 210692-210726 10 0.714
NZ_CP025394_13 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder 6254606-6254638 33 NZ_CP054617 Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence 208189-208221 10 0.697

1. spacer 4.3|1767169|21|NZ_CP025394|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 2, identity: 0.905

ccagccgtcaccgtcggcggt	CRISPR spacer
gcagccgtcaccgtcggcggc	Protospacer
 *******************.

2. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.852

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
accagctcggcgaacagcgcgaccacg	Protospacer
. ********** * ************

3. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 4, identity: 0.852

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
accagctcggcgaacagcgcgaccacg	Protospacer
. ********** * ************

4. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.852

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
gcctgctcggcgtagagcgcggcctcg	Protospacer
* * *****************.** **

5. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to NZ_LR594691 (Variovorax sp. WDL1 plasmid 3) position: , mismatch: 5, identity: 0.815

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
acctgctcggcgtagagcgcgcccagg	Protospacer
. * ***************** *** *

6. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 5, identity: 0.815

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
ggcaggtcggcgaagagcgcgaccatc	Protospacer
*.*** ****** ************. 

7. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to MN234174 (Mycobacterium phage Efra2, complete genome) position: , mismatch: 5, identity: 0.815

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
cgcagctcggcgtcgaccgcgaccaag	Protospacer
 .*********** ** ******** *

8. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to MN234165 (Mycobacterium phage Yunkel11, complete genome) position: , mismatch: 5, identity: 0.815

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
cgcagctcggcgtcgaccgcgaccaag	Protospacer
 .*********** ** ******** *

9. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to MF140416 (Mycobacterium phage LastHope, complete genome) position: , mismatch: 5, identity: 0.815

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
cgcagctcggcgtcgaccgcgaccaag	Protospacer
 .*********** ** ******** *

10. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.815

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
gccagcgcggcgtagagcgcggccaga	Protospacer
* **** **************.*** .

11. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 5, identity: 0.815

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
aacagcgcggcgtagagcgcgatcgca	Protospacer
.***** ***************.*.*.

12. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.848

ggggcgggggcggccggcggcgggaagggcgcg-	CRISPR spacer
gtggcgggggcggccggcggcagg-acggcgctc	Protospacer
* *******************.** * *****  

13. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 6, identity: 0.778

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
ccgcgctcggcgaagaccgcgaccacg	Protospacer
    ******** *** **********

14. spacer 1.1|383538|27|NZ_CP025394|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.778

gacagctcggcgtagagcgcgaccacg	CRISPR spacer
agcagcgcggcgtagagcgcgatcagc	Protospacer
..**** ***************.**  

15. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 7, identity: 0.788

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
ccggcggggccggccggcgccgggaaggtgacg	Protospacer
  ******* ********* ********  .**

16. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.788

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
ggggcgggggtgtccggcggcggggcctccgcg	Protospacer
**********.* ***********.    ****

17. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NC_008759 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence) position: , mismatch: 8, identity: 0.758

ggggcgggggcggccggcggcgg-----gaagggcgcg	CRISPR spacer
ggtgcggcggcggccggcggcgggccatgaagt-----	Protospacer
** **** ***************     ****      

18. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP021216 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence) position: , mismatch: 8, identity: 0.758

ggggcggg---ggcggccggcggcgggaagggcgcg	CRISPR spacer
---tcaggtttggcggacggcggcgggatgggcgcc	Protospacer
    *.**   ***** *********** ****** 

19. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP051470 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gaccgccgcgcggtcggcggcgggcagggcgcg	Protospacer
*.     * ****.********** ********

20. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP015290 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gaccgccgcgcggtcggcggcgggcagggcgcg	Protospacer
*.     * ****.********** ********

21. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP030273 (Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gaccgccgcgcggtcggcggcgggcagggcgcg	Protospacer
*.     * ****.********** ********

22. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to CP047033 (Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gaccgccgcgcggtcggcggcgggcagggcgcg	Protospacer
*.     * ****.********** ********

23. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP047039 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gaccgccgcgcggtcggcggcgggcagggcgcg	Protospacer
*.     * ****.********** ********

24. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP015213 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gaccgccgcgcggtcggcggcgggcagggcgcg	Protospacer
*.     * ****.********** ********

25. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gtcacacgggcggccggcggcgggaacgccgaa	Protospacer
*  .*. ******************* * ** .

26. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NC_011960 (Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gaccgccgcgcggtcggcggcgggcagggcgcg	Protospacer
*.     * ****.********** ********

27. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gaccgccgcgcggtcggcggcgggcagggcgcg	Protospacer
*.     * ****.********** ********

28. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NC_009040 (Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence) position: , mismatch: 9, identity: 0.727

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
gaccgccgcgcggtcggcggcgggcagggcgcg	Protospacer
*.     * ****.********** ********

29. spacer 2.1|474339|35|NZ_CP025394|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.714

agtggccggccagggacgggacgagggacaggtac	CRISPR spacer
tcaggccggcgaggaacgggacgagggacaacagg	Protospacer
   ******* ***.***************.  . 

30. spacer 13.1|6254606|33|NZ_CP025394|CRISPRCasFinder matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.697

ggggcgggggcggccggcggcgggaagggcgcg	CRISPR spacer
ctcggcagggcggccggcggcgtgcagggcgtt	Protospacer
   *  .*************** * ******. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 884712 : 1006869 89 Klosneuvirus(10.53%) protease,transposase,bacteriocin NA
DBSCAN-SWA_2 1353930 : 1416764 50 Bacillus_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 3814792 : 3823699 14 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_4 8433009 : 8474425 35 Thermobifida_phage(25.0%) transposase,integrase attL 8452440:8452457|attR 8474910:8474927
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage