CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP025413	Lactiplantibacillus plantarum strain X7021 plasmid unnamed1, complete sequence	0 crisprs	NA	1
NZ_CP025414	Lactiplantibacillus plantarum strain X7021 plasmid unnamed2	0 crisprs	NA	0
NZ_CP025417	Lactiplantibacillus plantarum strain X7021 plasmid unnamed5, complete sequence	0 crisprs	NA	1
NZ_CP025415	Lactiplantibacillus plantarum strain X7021 plasmid unnamed3, complete sequence	0 crisprs	NA	0
NZ_CP025418	Lactiplantibacillus plantarum strain X7021 plasmid unnamed6, complete sequence	0 crisprs	NA	0
NZ_CP025412	Lactiplantibacillus plantarum strain X7021 chromosome, complete genome	0 crisprs	csa3,DinG,cas3,DEDDh	6
NZ_CP025416	Lactiplantibacillus plantarum strain X7021 plasmid unnamed4, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21389 : 29100

Enterococcus_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054646979.1\|21389_23129_-	pyruvate oxidase	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	5.6e-33	26.8
WP_104796065.1\|23305_24226_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.0e-49	36.8
WP_049816396.1\|24619_25222_-	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A288TZV3	Enterococcus_phage	3.0e-50	54.2
WP_076633387.1\|25310_27734_-	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	4.4e-201	50.3
WP_080469038.1\|27892_28525_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.1e-54	52.0
WP_003660057.1\|28650_29100_+	cupin domain-containing protein	Q2I8C5	Bacillus_phage	3.1e-28	43.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP025412

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

559505 : 568129

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003644909.1\|559505_561203_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.9e-55	37.0
WP_003640956.1\|561224_561533_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_003637790.1\|561548_562148_+	recombination protein RecR	NA	NA	NA	NA
WP_003640957.1\|562162_562414_+	YaaL family protein	NA	NA	NA	NA
WP_003644908.1\|562811_563477_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.4e-53	52.7
WP_003640965.1\|563473_563803_+	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_104795556.1\|563819_564839_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.8e-32	33.5
WP_003640967.1\|564863_565211_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	2.4e-12	33.3
WP_003643942.1\|565309_566206_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	9.9e-82	55.7
WP_003640969.1\|566209_566995_+	acyl-ACP thioesterase	NA	NA	NA	NA
WP_003643943.1\|567133_568129_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	5.9e-51	38.2

DBSCAN-SWA_2

765949 : 812053

Lactobacillus_phage(16.67%)

integrase,protease,transposase

attL 799879:799898|attR 803032:803051

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053267349.1\|765949_766321_-\|transposase	transposase	NA	NA	NA	NA
WP_114894105.1\|766313_766490_-\|transposase	transposase	NA	NA	NA	NA
WP_158660341.1\|767011_769672_+	hypothetical protein	NA	NA	NA	NA
WP_053267347.1\|769927_770521_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_053267346.1\|770517_771384_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_087509231.1\|771491_771653_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_054519314.1\|771659_771929_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_021730181.1\|772496_772865_-	hypothetical protein	NA	NA	NA	NA
WP_021357386.1\|773097_773466_-	helix-turn-helix transcriptional regulator	E9LUL4	Lactobacillus_phage	2.9e-16	43.6
WP_053267343.1\|774013_774697_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_053267342.1\|775193_777698_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_021355861.1\|777829_778144_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	3.3e-08	36.0
WP_054519334.1\|778306_781018_+	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
WP_033098993.1\|781052_781643_+	hypothetical protein	NA	NA	NA	NA
WP_104796054.1\|781852_782710_+	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_013355305.1\|782776_783133_+	hypothetical protein	NA	NA	NA	NA
WP_097558256.1\|783727_784111_+	hypothetical protein	NA	NA	NA	NA
WP_104795574.1\|784100_785948_+	acetyltransferase	A0A1R3Y5Q6	Salmonella_virus	2.1e-22	24.5
WP_003641172.1\|786188_786443_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_003641173.1\|786454_787000_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
WP_003641174.1\|787012_787195_+	hypothetical protein	NA	NA	NA	NA
WP_003644046.1\|787209_787632_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_003641176.1\|787692_788133_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_053267339.1\|788336_789137_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_053267338.1\|789268_790279_+	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_015825253.1\|790640_790973_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_158099649.1\|791078_792668_+	alpha-rhamnosidase	NA	NA	NA	NA
WP_104795575.1\|792870_793464_+	DUF1819 family protein	NA	NA	NA	NA
WP_021357610.1\|793466_794048_+	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_097558087.1\|794082_797733_+	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_104795576.1\|797757_801309_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
799879:799898	attL	NA	NA	NA	NA
WP_104795577.1\|801366_802455_-\|integrase	site-specific integrase	Q9AZR0	Lactococcus_phage	4.0e-61	38.7
WP_104795578.1\|802454_804641_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
803032:803051	attR	NA	NA	NA	NA
WP_053267332.1\|804750_807267_+	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_104795579.1\|807389_809924_+	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	7.1e-69	27.5
WP_077727009.1\|811298_811508_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_072540428.1\|811504_812053_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	9.1e-30	40.3

DBSCAN-SWA_3

1199437 : 1206799

Lactobacillus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003643099.1\|1199437_1200385_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.7e-178	100.0
WP_003643097.1\|1200728_1201343_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.3e-112	100.0
WP_104795656.1\|1201345_1203784_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	99.6
WP_003643095.1\|1203871_1204432_+	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	2.7e-101	100.0
WP_053267624.1\|1204502_1204943_-	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	4.0e-76	98.6
WP_015380221.1\|1205038_1205176_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_053267625.1\|1205803_1206799_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	5.3e-52	38.8

DBSCAN-SWA_4

1715471 : 1800218

Lactobacillus_phage(81.13%)

integrase,protease,tail,terminase,head,tRNA,holin,portal,capsid

attL 1740847:1740864|attR 1807149:1807166

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080371161.1\|1715471_1716395_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_063851686.1\|1716866_1717388_-	shikimate kinase	NA	NA	NA	NA
WP_104795749.1\|1717390_1718488_-	prephenate dehydrogenase	NA	NA	NA	NA
WP_104795750.1\|1719802_1720330_-	amino acid biosynthesis protein	NA	NA	NA	NA
WP_104795751.1\|1720338_1721508_-	chorismate synthase	NA	NA	NA	NA
WP_104795752.1\|1721500_1722772_-	MFS transporter	NA	NA	NA	NA
WP_003640723.1\|1723413_1723767_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_053267831.1\|1723789_1726363_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	9.6e-21	23.3
WP_003640725.1\|1726377_1726683_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA
WP_003640726.1\|1726672_1726972_-	YlxR family protein	NA	NA	NA	NA
WP_003644496.1\|1727016_1728234_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_003640728.1\|1728254_1728731_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_003640729.1\|1729026_1733340_-	DNA polymerase III subunit alpha	A0A1X9SH08	Bradyrhizobium_phage	1.0e-14	34.0
WP_053267830.1\|1733833_1735543_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_104795753.1\|1735582_1736860_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_003640734.1\|1736897_1737683_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003640735.1\|1737698_1738478_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	1.1e-23	43.1
WP_003640736.1\|1738597_1739161_-	ribosome recycling factor	NA	NA	NA	NA
WP_003640737.1\|1739162_1739885_-	UMP kinase	NA	NA	NA	NA
WP_003644498.1\|1740084_1740963_-	elongation factor Ts	NA	NA	NA	NA
1740847:1740864	attL	NA	NA	NA	NA
WP_003640739.1\|1741065_1741869_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_003640740.1\|1742093_1742816_+	HAD family hydrolase	NA	NA	NA	NA
WP_003640741.1\|1743103_1744102_-	D-2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	2.3e-47	34.9
WP_053267827.1\|1744186_1744492_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_015825656.1\|1744475_1745234_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_025015626.1\|1745345_1745981_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_104795754.1\|1746038_1746278_-	YneF family protein	NA	NA	NA	NA
WP_003644501.1\|1746375_1746615_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003640747.1\|1746766_1747399_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	2.3e-16	56.2
WP_089178220.1\|1747488_1747719_-	DNA alkylation repair protein	NA	NA	NA	NA
WP_003645631.1\|1748022_1748652_+	hypothetical protein	NA	NA	NA	NA
WP_013355614.1\|1748702_1749872_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
WP_053267825.1\|1749907_1750300_-	hypothetical protein	NA	NA	NA	NA
WP_015640487.1\|1750463_1750856_+	hypothetical protein	NA	NA	NA	NA
WP_003645635.1\|1751302_1752244_+	glycosyltransferase family 2 protein	V9QJB1	Oenococcus_phage	3.1e-78	48.7
WP_104795755.1\|1752943_1753516_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_104795756.1\|1753667_1754852_-	LCP family protein	NA	NA	NA	NA
WP_104795757.1\|1754832_1755624_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-28	36.3
WP_003644507.1\|1755642_1757385_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_003644508.1\|1757863_1759075_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_104795758.1\|1760121_1760658_-\|holin	holin	E9LUS0	Lactobacillus_phage	2.8e-39	95.7
WP_057137293.1\|1760669_1760933_-	hemolysin XhlA family protein	E9LUR9	Lactobacillus_phage	2.5e-38	98.9
WP_104795759.1\|1760932_1762105_-	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	1.2e-193	86.7
WP_104795760.1\|1762116_1762329_-	hypothetical protein	A0A0A1ENR9	Lactobacillus_phage	4.4e-17	73.9
WP_104795761.1\|1762325_1763438_-	hypothetical protein	A0A2P0ZLF6	Lactobacillus_phage	8.0e-57	93.7
WP_187239774.1\|1763421_1763583_-	hypothetical protein	A0A2P0ZLG1	Lactobacillus_phage	2.8e-19	96.2
WP_104795762.1\|1763586_1763826_-	hypothetical protein	A0A2K9VDF6	Lactobacillus_phage	8.5e-33	98.7
WP_104795763.1\|1763818_1765702_-\|tail	phage tail protein	A0A2K9V5E9	Lactobacillus_phage	3.8e-35	84.1
WP_104795764.1\|1765718_1768106_-\|tail	phage tail protein	E9LUR3	Lactobacillus_phage	0.0e+00	69.2
WP_104795765.1\|1768172_1769879_-\|tail	phage tail family protein	E9LUR2	Lactobacillus_phage	1.1e-214	61.6
WP_104795766.1\|1769937_1774806_-	C40 family peptidase	A0A2P0ZLG0	Lactobacillus_phage	0.0e+00	59.8
WP_104795767.1\|1774837_1775023_-	hypothetical protein	NA	NA	NA	NA
WP_104795768.1\|1775067_1775442_-\|tail	phage tail assembly chaperone	A0A2P0ZLH4	Lactobacillus_phage	1.7e-56	93.5
WP_104795769.1\|1775515_1776169_-\|tail	phage tail protein	A0A2P0ZLH1	Lactobacillus_phage	6.2e-110	92.2
WP_104795770.1\|1776184_1776565_-	DUF806 family protein	A0A2P0ZLF4	Lactobacillus_phage	2.9e-59	91.3
WP_104795771.1\|1776564_1776972_-	HK97 gp10 family phage protein	A0A2P0ZLE6	Lactobacillus_phage	6.5e-65	91.7
WP_085439187.1\|1776974_1777322_-\|head	phage head closure protein	A0A2P0ZLF0	Lactobacillus_phage	7.0e-44	73.9
WP_104795772.1\|1777311_1777644_-\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	3.7e-42	81.5
WP_104795773.1\|1777718_1778948_-\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	1.9e-213	94.1
WP_104795774.1\|1778947_1779703_-\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	3.9e-124	93.6
WP_104795775.1\|1779680_1780874_-\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	3.1e-224	98.7
WP_104795776.1\|1780876_1781071_-	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	8.2e-26	95.3
WP_104795777.1\|1783014_1783470_-\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	8.0e-80	97.4
WP_097558071.1\|1783667_1784135_-	HNH endonuclease	E9LUP7	Lactobacillus_phage	8.7e-82	93.5
WP_054519272.1\|1784145_1784322_-	hypothetical protein	E9LUP6	Lactobacillus_phage	1.7e-14	72.4
WP_054519273.1\|1784299_1784497_-	hypothetical protein	NA	NA	NA	NA
WP_015380489.1\|1785158_1785587_-	phage transcriptional activator RinA	E9LUP5	Lactobacillus_phage	1.1e-65	86.5
WP_104795778.1\|1785874_1786180_-	hypothetical protein	K4I242	Lactobacillus_phage	3.8e-25	60.0
WP_104795779.1\|1786182_1786554_-	hypothetical protein	Q9T1G9	Lactobacillus_phage	2.5e-15	47.5
WP_104795780.1\|1786550_1786904_-	DUF1642 domain-containing protein	Q8LTB5	Lactobacillus_phage	4.8e-32	58.1
WP_104795781.1\|1786966_1787167_-	hypothetical protein	NA	NA	NA	NA
WP_187345431.1\|1787238_1787634_-	hypothetical protein	O03921	Lactobacillus_phage	2.1e-36	64.8
WP_187345432.1\|1787617_1787794_-	hypothetical protein	E9LUP2	Lactobacillus_phage	2.7e-20	82.8
WP_104795783.1\|1787871_1788180_-	hypothetical protein	E9LUN7	Lactobacillus_phage	6.6e-46	90.2
WP_085439171.1\|1788315_1789101_-	ATP-binding protein	E9LUN6	Lactobacillus_phage	3.1e-132	90.8
WP_104795784.1\|1789100_1789817_-	helix-turn-helix domain-containing protein	A0A0P0I7Q1	Lactobacillus_phage	1.2e-34	39.3
WP_104795785.1\|1789858_1790551_-	hypothetical protein	E9LUU3	Lactobacillus_phage	3.4e-130	97.8
WP_104795786.1\|1790597_1791257_-	DUF669 domain-containing protein	E9LUU2	Lactobacillus_phage	5.9e-92	95.4
WP_104795787.1\|1791258_1791921_-	AAA family ATPase	E9LUU1	Lactobacillus_phage	2.1e-121	99.1
WP_104795788.1\|1791921_1792782_-	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	1.1e-37	34.4
WP_187345433.1\|1792781_1792952_-	hypothetical protein	NA	NA	NA	NA
WP_104795789.1\|1793000_1793225_-	hypothetical protein	E9LUT8	Lactobacillus_phage	2.0e-28	86.3
WP_065674473.1\|1793236_1793476_-	tagatose-bisphosphate aldolase	E9LUT6	Lactobacillus_phage	5.9e-34	83.5
WP_016058357.1\|1793509_1793689_-	helix-turn-helix domain-containing protein	E9LUT5	Lactobacillus_phage	2.2e-25	100.0
WP_104795790.1\|1793830_1794091_-	hypothetical protein	NA	NA	NA	NA
WP_015380501.1\|1794148_1794475_+	hypothetical protein	E9LUT2	Lactobacillus_phage	2.7e-53	98.1
WP_003641364.1\|1794590_1794800_-	hypothetical protein	NA	NA	NA	NA
WP_027821294.1\|1795561_1795777_-	helix-turn-helix transcriptional regulator	A0A2H4JBV7	uncultured_Caudovirales_phage	5.9e-17	71.0
WP_104795791.1\|1795969_1796641_+	LexA family transcriptional regulator	D7RWL5	Brochothrix_phage	1.1e-45	45.5
WP_104795792.1\|1796765_1797644_+	HIRAN domain-containing protein	A0A2H4J549	uncultured_Caudovirales_phage	3.5e-07	35.3
WP_003641358.1\|1797658_1797859_+	hypothetical protein	E9LUS6	Lactobacillus_phage	4.9e-26	100.0
WP_016510998.1\|1799054_1800218_+\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	9.2e-56	36.5
1807149:1807166	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2086001 : 2140908

Lactobacillus_phage(75.0%)

integrase,tail,terminase,head,holin,portal,capsid

attL 2126878:2126899|attR 2141086:2141107

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027821350.1\|2086001_2087144_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	3.5e-39	28.5
WP_063722063.1\|2087151_2087823_-	hypothetical protein	NA	NA	NA	NA
WP_079111819.1\|2087932_2088232_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_104795830.1\|2088824_2089208_-\|holin	holin	A0A2H4PBB2	Lactobacillus_phage	9.9e-15	83.7
WP_104795831.1\|2089194_2089491_-	hypothetical protein	A0A1I9KK55	Lactobacillus_phage	7.6e-39	76.5
WP_104795832.1\|2090629_2090806_-	XkdX family protein	NA	NA	NA	NA
WP_104795833.1\|2090802_2091123_-	DUF2977 domain-containing protein	Q7M292	Lactobacillus_phage	2.4e-30	80.8
WP_104795834.1\|2091122_2091908_-	hypothetical protein	O03971	Lactobacillus_phage	9.7e-126	85.4
WP_104796058.1\|2091923_2093450_-	metallophosphoesterase	O03968	Lactobacillus_phage	2.5e-194	71.5
WP_187345434.1\|2093735_2094047_-	hypothetical protein	O03939	Lactobacillus_phage	8.6e-09	88.9
WP_104795835.1\|2094024_2094318_-	hypothetical protein	NA	NA	NA	NA
WP_104795836.1\|2094310_2095429_-\|tail	phage tail protein	O03938	Lactobacillus_phage	1.1e-194	91.7
WP_104795837.1\|2095441_2096251_-\|tail	phage tail family protein	D2KRB8	Lactobacillus_phage	1.9e-52	41.9
WP_104795838.1\|2096250_2101074_-	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	0.0e+00	83.3
WP_053566809.1\|2101077_2101701_-	hypothetical protein	O03936	Lactobacillus_phage	7.3e-108	100.0
WP_104795839.1\|2101706_2102138_-	hypothetical protein	O03935	Lactobacillus_phage	1.6e-74	97.2
WP_104795840.1\|2102189_2102705_-\|capsid	capsid protein	O03972	Lactobacillus_phage	7.1e-85	97.5
WP_053566811.1\|2102738_2103143_-	hypothetical protein	O03934	Lactobacillus_phage	4.8e-68	97.0
WP_053566812.1\|2103142_2103490_-\|capsid	minor capsid protein	O03933	Lactobacillus_phage	9.8e-46	79.7
WP_187345435.1\|2103489_2103840_-\|capsid	capsid protein	O03932	Lactobacillus_phage	3.1e-55	91.4
WP_104795841.1\|2103839_2104268_-	hypothetical protein	NA	NA	NA	NA
WP_104795842.1\|2104421_2105312_-\|capsid	capsid protein	U3PDP8	Lactobacillus_phage	4.0e-91	58.5
WP_104795843.1\|2106008_2107151_-\|capsid	capsid protein	O03929	Lactobacillus_phage	7.7e-172	95.3
WP_104795844.1\|2107147_2108674_-\|portal	phage portal protein	O03928	Lactobacillus_phage	4.2e-282	95.9
WP_104795845.1\|2108682_2110026_-\|terminase	PBSX family phage terminase large subunit	O03927	Lactobacillus_phage	9.4e-262	96.9
WP_104795846.1\|2110006_2110594_-\|terminase	terminase small subunit	O03926	Lactobacillus_phage	1.3e-26	43.6
WP_053339019.1\|2110651_2110972_-	hypothetical protein	A0A1J1J9Q7	Escherichia_phage	9.4e-19	48.1
WP_021732633.1\|2111227_2111497_-	DUF2829 domain-containing protein	A0A0K2FLC4	Brevibacillus_phage	2.5e-12	45.5
WP_003642805.1\|2112095_2112557_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	1.1e-39	57.0
WP_047673728.1\|2112848_2113325_-	DUF1642 domain-containing protein	A0A2P0ZLB8	Lactobacillus_phage	8.4e-48	60.8
WP_104795847.1\|2113317_2113683_-	hypothetical protein	A0A1I9KKG9	Lactobacillus_phage	5.0e-32	56.9
WP_158660343.1\|2113675_2113822_-	hypothetical protein	NA	NA	NA	NA
WP_104795848.1\|2113889_2114960_-	DNA cytosine methyltransferase	A0A1I9KKE7	Lactobacillus_phage	6.2e-123	59.2
WP_056953070.1\|2115055_2115367_-	hypothetical protein	A0A2P0ZLB4	Lactobacillus_phage	7.2e-48	90.3
WP_104795849.1\|2115369_2115744_-	hypothetical protein	NA	NA	NA	NA
WP_104795850.1\|2115740_2116259_-	hypothetical protein	O03915	Lactobacillus_phage	2.9e-41	55.3
WP_103851856.1\|2116255_2116543_-	hypothetical protein	NA	NA	NA	NA
WP_104795851.1\|2116539_2117448_-	DnaD domain protein	NA	NA	NA	NA
WP_187345455.1\|2117528_2118281_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A0P0IZH9	Lactobacillus_phage	3.8e-71	50.2
WP_104795853.1\|2118312_2119212_-	recombinase RecT	E9LUM3	Lactobacillus_phage	1.3e-62	47.7
WP_104795854.1\|2119208_2119595_-	hypothetical protein	NA	NA	NA	NA
WP_015380633.1\|2119965_2120478_-	transcriptional regulator	D6PST4	Lactobacillus_phage	2.5e-29	44.7
WP_104795855.1\|2120544_2120850_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_003642792.1\|2120861_2121032_-	hypothetical protein	NA	NA	NA	NA
WP_011101083.1\|2121044_2121275_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016511202.1\|2121447_2121810_+	helix-turn-helix domain-containing protein	A0A0U4KKM4	Exiguobacterium_phage	2.6e-09	32.0
WP_003642784.1\|2121821_2122235_+	ImmA/IrrE family metallo-endopeptidase	A0A0M4RD70	Bacillus_phage	3.4e-05	31.3
WP_104795856.1\|2122261_2123260_+	hypothetical protein	NA	NA	NA	NA
WP_104795857.1\|2123664_2124792_+	Abi family protein	A0A1Q1PVS3	Staphylococcus_phage	1.4e-24	28.2
WP_104795858.1\|2124892_2126014_+\|integrase	site-specific integrase	D6PSS4	Lactobacillus_phage	2.9e-46	32.4
WP_003642774.1\|2126364_2126571_-	hypothetical protein	NA	NA	NA	NA
2126878:2126899	attL	NA	NA	NA	NA
WP_187345436.1\|2127375_2127747_-	hypothetical protein	NA	NA	NA	NA
WP_104795861.1\|2127902_2128172_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_104795862.1\|2128581_2130162_-\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	7.9e-42	26.8
WP_104795863.1\|2130151_2131261_-\|portal	phage portal protein	A0A2H4J9Q5	uncultured_Caudovirales_phage	1.0e-48	33.3
WP_033611503.1\|2131261_2131462_-	hypothetical protein	NA	NA	NA	NA
WP_104795864.1\|2131415_2133119_-\|terminase	terminase large subunit	A0A2H4JBN3	uncultured_Caudovirales_phage	1.2e-120	40.3
WP_104795865.1\|2133115_2133589_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_061468355.1\|2134493_2134883_-	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	3.0e-19	45.2
WP_104795866.1\|2134875_2135214_-\|head	phage head closure protein	A0A2P0ZLF0	Lactobacillus_phage	1.9e-09	36.6
WP_089197947.1\|2135200_2135392_-	hypothetical protein	NA	NA	NA	NA
WP_104795867.1\|2135407_2135887_-	hypothetical protein	NA	NA	NA	NA
WP_104795868.1\|2136032_2137427_-	virulence protein	A0A1W6JQD6	Staphylococcus_phage	9.7e-68	40.4
WP_104795869.1\|2137426_2138227_-	bifunctional DNA primase/polymerase	NA	NA	NA	NA
WP_104795870.1\|2138240_2138468_-	hypothetical protein	NA	NA	NA	NA
WP_016527234.1\|2138737_2138917_-	helix-turn-helix domain-containing protein	E9LUT5	Lactobacillus_phage	3.0e-22	89.7
WP_104795871.1\|2139073_2139694_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_104795872.1\|2139750_2140908_+\|integrase	site-specific integrase	Q938N9	Temperate_phage	3.0e-54	35.1
2141086:2141107	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2332349 : 2340860

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003645867.1\|2332349_2332928_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-21	33.9
WP_003645866.1\|2332920_2333946_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	2.7e-59	41.0
WP_016527273.1\|2333942_2335397_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.3e-50	34.0
WP_104795899.1\|2335381_2337601_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-143	39.1
WP_011101895.1\|2337593_2338274_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003642588.1\|2338273_2338528_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003642587.1\|2338529_2339261_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.6e-37	37.3
WP_015380738.1\|2339263_2340394_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_003645861.1\|2340377_2340860_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-16	41.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP025417

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10256 : 45290

Enterobacteria_phage(27.27%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104796133.1\|10256_11150_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	8.1e-60	46.3
WP_034529615.1\|11125_11386_-\|transposase	transposase	A0A1P8CWP5	Bacillus_phage	2.8e-13	46.5
WP_104796134.1\|11547_12801_-	hypothetical protein	NA	NA	NA	NA
WP_052470505.1\|12821_13781_-	glycosyltransferase	NA	NA	NA	NA
WP_041153667.1\|13811_14795_-	Stealth CR1 domain-containing protein	NA	NA	NA	NA
WP_080315025.1\|14831_15491_-	acyltransferase	NA	NA	NA	NA
WP_041153668.1\|15497_16658_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_041153669.1\|16657_17836_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_041153670.1\|17896_18565_-	sugar transferase	NA	NA	NA	NA
WP_104796135.1\|18619_19393_-	tyrosine protein phosphatase	NA	NA	NA	NA
WP_104796136.1\|19379_20099_-	CpsD/CapB family tyrosine-protein kinase	NA	NA	NA	NA
WP_052470506.1\|20110_20881_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_016526595.1\|21454_22120_-	sugar transferase	NA	NA	NA	NA
WP_104796137.1\|22135_22972_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.2e-34	36.8
WP_016526593.1\|23004_24033_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.3e-71	45.1
WP_003644155.1\|24042_24624_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.3e-38	45.1
WP_041153676.1\|24627_25497_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.6e-99	59.4
WP_102115684.1\|25720_26896_-\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	1.8e-27	29.2
WP_104796139.1\|28085_29402_-	hypothetical protein	NA	NA	NA	NA
WP_075269600.1\|29573_29825_+\|transposase	transposase	Q6J1X3	Lactobacillus_phage	7.8e-37	95.2
WP_104796140.1\|29878_30721_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	4.3e-156	98.9
WP_104796141.1\|31010_31307_-	hypothetical protein	NA	NA	NA	NA
WP_104796142.1\|31383_34323_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA
WP_104796143.1\|35139_37245_-	hypothetical protein	NA	NA	NA	NA
WP_062690082.1\|37338_37653_-	hypothetical protein	NA	NA	NA	NA
WP_104796144.1\|37718_39503_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	7.5e-81	33.7
WP_104796145.1\|39505_40111_-	hypothetical protein	NA	NA	NA	NA
WP_063485948.1\|40113_40308_-	hypothetical protein	NA	NA	NA	NA
WP_104796146.1\|40304_41270_-	DUF3991 and TOPRIM domain-containing protein	NA	NA	NA	NA
WP_104796147.1\|41383_43546_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	3.1e-105	46.9
WP_006293514.1\|44269_44374_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_063489657.1\|44654_45290_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP025413

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP025412

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP025417

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection