CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP025509	Rhizobium leguminosarum bv. viciae strain UPM791 chromosome, complete genome	2 crisprs	cas3,csa3,WYL,RT,DEDDh	2	5
NZ_CP025506	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence	0 crisprs	NA	0	1
NZ_CP025510	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvD, complete sequence	0 crisprs	NA	0	2
NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	0 crisprs	csa3,DEDDh	0	0
NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	0 crisprs	RT,csa3	0	0
NZ_CP025505	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvC, complete sequence	0 crisprs	DinG,RT	0	34

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4989

Ochrobactrum_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516710.1\|1220_2258_+	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	1.8e-34	33.9
WP_018516709.1\|2448_3663_+	replication initiation protein RepC	L7TKN6	Rhizobium_phage	2.2e-20	29.0
WP_018516708.1\|3893_4628_+	NYN domain-containing protein	NA	NA	NA	NA
WP_018516707.1\|4782_4989_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.0e-10	50.0

DBSCAN-SWA_2

19358 : 22100

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026242317.1\|19358_22100_-	UvrD-helicase domain-containing protein	A0A1V0SG90	Hokovirus	2.3e-12	26.0

DBSCAN-SWA_3

28991 : 30047

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080646132.1\|28991_30047_-	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	5.5e-15	34.6

DBSCAN-SWA_4

36383 : 38654

Burkholderia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158672596.1\|36383_38654_+	AAA family ATPase	C7BGE8	Burkholderia_phage	2.9e-13	34.9

DBSCAN-SWA_5

44641 : 46197

Chrysochromulina_ericina_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516682.1\|44641_45412_+	exodeoxyribonuclease III	A0A0N9QXX6	Chrysochromulina_ericina_virus	3.9e-18	26.2
WP_050566325.1\|45408_46197_-	SOS response-associated peptidase	A0A291AUP1	Sinorhizobium_phage	4.4e-41	38.1

DBSCAN-SWA_6

50065 : 53332

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516677.1\|50065_53332_+	DNA polymerase III subunit alpha	A0A0K1Y8T6	Streptomyces_phage	1.2e-87	27.0

DBSCAN-SWA_7

57345 : 58329

Acidianus_tailed_spindle_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516674.1\|57345_58329_-	ATP-binding protein	A0A125SJ49	Acidianus_tailed_spindle_virus	1.3e-15	31.5

DBSCAN-SWA_8

62634 : 63636

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516670.1\|62634_63636_-	DUF1353 domain-containing protein	A0A2I7QXN9	Vibrio_phage	5.2e-07	41.0

DBSCAN-SWA_9

79959 : 84933

Bacillus_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516656.1\|79959_81192_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	7.1e-30	37.8
WP_011654140.1\|81214_82096_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA
WP_018481131.1\|82160_83033_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011654142.1\|83101_83392_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_018516654.1\|83441_83786_+	hypothetical protein	NA	NA	NA	NA
WP_018516653.1\|83952_84933_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.7e-55	40.2

DBSCAN-SWA_10

96094 : 98543

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516644.1\|96094_96844_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-10	25.0
WP_018516643.1\|96836_97541_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.5e-13	25.1
WP_018516642.1\|97658_98543_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	4.8e-12	39.6

DBSCAN-SWA_11

102886 : 109295

Leptospira_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063828064.1\|102886_104083_+	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	7.1e-35	30.5
WP_026242310.1\|104869_105319_-	hypothetical protein	NA	NA	NA	NA
WP_104891185.1\|105704_105893_+	hypothetical protein	NA	NA	NA	NA
WP_018516631.1\|106228_106810_-	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_018516630.1\|106806_107892_-	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.9e-47	36.3
WP_018516629.1\|107888_109295_-	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	1.2e-25	23.1

DBSCAN-SWA_12

115342 : 117252

Salmonella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517623.1\|115342_116296_+	hypothetical protein	A0A1S6KZY1	Salmonella_phage	7.9e-29	43.0
WP_018517622.1\|116517_117252_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	9.7e-11	27.1

DBSCAN-SWA_13

120778 : 122293

Hepacivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517617.1\|120778_122293_+	malonyl-CoA synthase	Q75ZG1	Hepacivirus	6.0e-39	28.0

DBSCAN-SWA_14

132191 : 142111

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517605.1\|132191_132968_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.3e-12	27.6
WP_018517604.1\|132964_133678_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.0e-12	26.2
WP_032990445.1\|133974_135345_+	M20 family metallopeptidase	NA	NA	NA	NA
WP_018241645.1\|136370_138026_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-100	45.5
WP_018241646.1\|138071_138419_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.8e-38	62.6
WP_018241647.1\|138415_138826_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_080646163.1\|139134_140760_-	AAA family ATPase	V9QJA7	Oenococcus_phage	1.1e-35	26.2
WP_018517742.1\|140978_141224_-	hypothetical protein	NA	NA	NA	NA
WP_104891186.1\|141244_141373_-	YHYH domain-containing protein	NA	NA	NA	NA
WP_018517743.1\|141871_142111_-	30S ribosomal protein S21	M1HLV7	Pelagibacter_phage	1.8e-06	57.1

DBSCAN-SWA_15

151966 : 164057

Leptospira_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517779.1\|151966_152896_+	cysteine synthase family protein	A0A1X9I5K7	Streptococcus_phage	8.7e-49	36.3
WP_080646167.1\|153031_153547_-	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA
WP_018517780.1\|153911_154337_+	ACT domain-containing protein	NA	NA	NA	NA
WP_018517781.1\|154708_155020_-	hypothetical protein	NA	NA	NA	NA
WP_018517782.1\|155410_156193_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	1.1e-09	30.5
WP_104891200.1\|156758_157846_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.6e-47	38.8
WP_080646166.1\|159002_159752_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_026242470.1\|160343_161432_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.2e-18	27.4
WP_018517771.1\|161424_162120_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.9e-34	35.4
WP_104891200.1\|162970_164057_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.6e-47	38.8

DBSCAN-SWA_16

178589 : 180875

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516586.1\|178589_180875_+	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.1e-80	30.8

DBSCAN-SWA_17

196005 : 197280

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050566347.1\|196005_197280_+	diaminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	2.2e-26	26.3

DBSCAN-SWA_18

209469 : 210591

Mycoplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517588.1\|209469_210591_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	4.3e-26	35.4

DBSCAN-SWA_19

223607 : 233755

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517598.1\|223607_225203_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-21	32.9
WP_018241645.1\|225481_227137_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-100	45.5
WP_018241646.1\|227182_227530_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.8e-38	62.6
WP_018241647.1\|227526_227937_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_018517534.1\|228202_228715_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_018517533.1\|228857_230261_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.9e-15	27.9
WP_018517532.1\|230428_231838_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_018517531.1\|231987_232623_+	hypothetical protein	A0A2H4J137	uncultured_Caudovirales_phage	2.7e-57	51.2
WP_018517530.1\|232615_233755_+	hypothetical protein	A0A2H4J138	uncultured_Caudovirales_phage	8.9e-104	52.4

DBSCAN-SWA_20

236968 : 238039

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517526.1\|236968_238039_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-30	36.3

DBSCAN-SWA_21

243940 : 246470

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517521.1\|243940_245488_+	AMP-binding protein	A0A1V0SBX8	Catovirus	8.6e-17	22.2
WP_018517520.1\|245603_246470_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	2.7e-28	35.4

DBSCAN-SWA_22

275805 : 278152

Anomala_cuprea_entomopoxvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026242371.1\|275805_276840_-	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	2.0e-25	38.1
WP_018517098.1\|276877_278152_-	chitooligosaccharide synthase NodC	M1HH03	Paramecium_bursaria_Chlorella_virus	5.8e-11	24.5

DBSCAN-SWA_23

284263 : 286090

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517090.1\|284263_286090_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HQK2	Paramecium_bursaria_Chlorella_virus	9.6e-108	38.7

DBSCAN-SWA_24

289816 : 290599

Anomala_cuprea_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517087.1\|289816_290599_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.9e-13	24.2

DBSCAN-SWA_25

294103 : 295018

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517083.1\|294103_295018_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-13	26.0

DBSCAN-SWA_26

300799 : 301459

Bordetella_phage(100.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104891191.1\|300799_301459_-\|tail	tail fiber protein	A0A291LA10	Bordetella_phage	2.2e-14	38.5

DBSCAN-SWA_27

305830 : 307036

environmental_halophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517076.1\|305830_307036_-	aminotransferase class V-fold PLP-dependent enzyme	Q2XUY6	environmental_halophage	2.5e-32	25.8

DBSCAN-SWA_28

319429 : 320716

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018517065.1\|319429_320716_-	hypothetical protein	A0A218MN59	uncultured_virus	1.7e-10	21.8

DBSCAN-SWA_29

342509 : 345778

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050566336.1\|342509_344429_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.8e-14	35.1
WP_018517042.1\|344611_345778_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	6.3e-20	31.3

DBSCAN-SWA_30

354210 : 355215

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026242362.1\|354210_355215_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.5e-25	35.3

DBSCAN-SWA_31

365837 : 370937

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026242325.1\|365837_370937_+	DEAD/DEAH box helicase family protein	I6NW45	Burkholderia_virus	0.0e+00	42.3

DBSCAN-SWA_32

377215 : 378142

Caulobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516741.1\|377215_378142_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.4e-70	48.0

DBSCAN-SWA_33

381387 : 381837

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516736.1\|381387_381837_-	thermonuclease family protein	O64020	Bacillus_phage	2.6e-06	43.0

DBSCAN-SWA_34

384961 : 388288

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018516732.1\|384961_388288_+	Ti-type conjugative transfer relaxase TraA	V5UQN3	Mycobacterium_phage	1.7e-14	33.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP025509

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025509_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025509_1

149446-149519

Orphan

Consensus_repeat	Method
GGAAAAGTGTGAAGCGGTTTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025509_1

>merge|NZ_CP025509|1|149446-149519|CRISPRCasFinder
GGAAAAGTGTGAAGCGGTTTTCCGTCCGGGATTGCGTACTTCAAATCAATCGGAAAAGTGTGAAGCGGTTTTCC

>NZ_CP025509|1|1|149446-149519|CRISPRCasFinder
GGAAAAGTGTGAAGCGGTTTTCC	GTCCGGGATTGCGTACTTCAAATCAATC
GGAAAAGTGTGAAGCGGTTTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025509.1\|WP_017990167.1\|156768_156969_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025509.1\|WP_018244610.1\|139985_140714_+\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
NZ_CP025509.1\|WP_018244614.1\|145063_146617_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP025509.1\|WP_018244613.1\|144061_145036_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP025509.1\|WP_018517354.1\|157297_158113_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP025509.1\|WP_018244611.1\|142329_142707_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025509.1\|WP_018244623.1\|156251_156629_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP025509.1\|WP_018244622.1\|155666_156125_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP025509.1\|WP_018241007.1\|141016_142120_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP025509.1\|WP_018244612.1\|142974_143994_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176222
NZ_CP025509.1\|WP_018244617.1\|148378_149398_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381387
NZ_CP025509.1\|WP_018244621.1\|153643_155641_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|226646
NZ_CP025509.1\|WP_018517353.1\|152400_153525_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP025509.1\|WP_018244615.1\|146724_147714_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380663
NZ_CP025509.1\|WP_026188604.1\|138741_139989_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP025509.1\|WP_018244619.1\|151271_152171_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP025509.1\|WP_018244618.1\|149541_151044_-\|altronate-dehydratase	unknown	unknown	gnl\|CDD\|377287
NZ_CP025509.1\|WP_018244616.1\|147922_148369_-\|fucose-binding-protein	unknown	unknown	gnl\|CDD\|226632
NZ_CP025509.1\|WP_018244627.1\|158880_159321_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025509.1\|WP_018244626.1\|158241_158817_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379082

Protein	Function_ID	Function_description	E-value
NZ_CP025509.1\|WP_018517354.1\|157297_158113_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	4.53574e-31
NZ_CP025509.1\|WP_018244610.1\|139985_140714_+\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	5.03372e-88
NZ_CP025509.1\|WP_018244614.1\|145063_146617_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP025509.1\|WP_018244613.1\|144061_145036_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	2.45636e-82
NZ_CP025509.1\|WP_018244619.1\|151271_152171_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	4.23397e-37
NZ_CP025509.1\|WP_018244623.1\|156251_156629_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	9.48296e-10
NZ_CP025509.1\|WP_018244622.1\|155666_156125_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	3.04258e-14
NZ_CP025509.1\|WP_018241007.1\|141016_142120_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.71501e-07
NZ_CP025509.1\|WP_018244612.1\|142974_143994_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176222	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.35184e-153
NZ_CP025509.1\|WP_018244617.1\|148378_149398_-\|aldo/keto-reductase	gnl\|CDD\|381387	cd19161, AKR_AKR15A1, Microbacterium luteolum pyridoxal 4-dehydrogenase (PLD) and similar proteins. Microbacterium luteolum PLD (EC1.1.1.107) is a founding member of aldo-keto reductase family 15 member A1 (AKR15A1). It catalyzes irreversible oxidation of pyridoxal.	2.69297e-165
NZ_CP025509.1\|WP_018244621.1\|153643_155641_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	0
NZ_CP025509.1\|WP_018517353.1\|152400_153525_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.000615065
NZ_CP025509.1\|WP_018244615.1\|146724_147714_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380663	cd20008, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein such as CUT2. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	9.54327e-115
NZ_CP025509.1\|WP_026188604.1\|138741_139989_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.48155e-26
NZ_CP025509.1\|WP_018244618.1\|149541_151044_-\|altronate-dehydratase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0
NZ_CP025509.1\|WP_018244616.1\|147922_148369_-\|fucose-binding-protein	gnl\|CDD\|226632	COG4154, FucU, Fucose dissimilation pathway protein FucU [Carbohydrate transport and metabolism].	3.03858e-63
NZ_CP025509.1\|WP_018244626.1\|158241_158817_-\|AAA-family-ATPase	gnl\|CDD\|379082	pfam13238, AAA_18, AAA domain.	2.26164e-06

>NZ_CP025509.1|WP_018244617.1|148378_149398_-|aldo/keto-reductase
MKKRRIGKTKLEVTEISFGAAALGGLYRACPREQAMDTLQAAWDSGIRYFDVAPWYGLGLAERRVGDFLRDQPDGSYVLSTKVGRLLRPVPTGTVPDYSYVDPLSFDADYDYSYDGIMRSVEFSYARLGLNRIDILYVHDLGVYTHGAAKNAVHQKQFLDSGVKALEELKSSGAISAFGLGVNEVPVCLDVMRHSDLDCILLAGRYTLLDRSAVAELLPLCRQKGTSLVVGGVFNSGILATGPVPGSHFDYMPADDDVLAKVGAMEAIAKSHGVPLAAPALQFPLREAIVASVLIGTAKPSSLTRNMEIVEPRLADEIYAEFEPYTLVAPPLGAEAVRV
>NZ_CP025509.1|WP_018244616.1|147922_148369_-|fucose-binding-protein
MLKGIHPLLGPDLLHALKTMGHGDDIVISDANFPSGSMGPPVIRADGVSATAMAEAILTHMPLDTFVPEAAWRMEVVGDPDAMPEVCTEFQQIVSKHAGDFRIVPVERFAFYAMARKATYIVATTEFRLYGNLILKKGVVHPDEVDMA
>NZ_CP025509.1|WP_018244615.1|146724_147714_-|ABC-transporter-substrate-binding-protein
MSIVKSLLSRRAFTALAGAAVIATAMPATSFAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPELGAQAESDVNGQISILENAVAGKPAAVVISPTEFKALGKPIDEAAKSVPIIGIDSGADSKAFKSFLTTDNVQGGRIAADGLAAAIKEMTGKEEGDIVILTNLPGVGSLEQRREGFLDQIKTKHPGLKVIADKYGDGQATTGLNMMTDLITANPNLVGVFASNLILAQGVGQAIAENKLGDKIKVIGFDSDDKTVGFLKDGAIAGLVVQDPYRMGYDGIKTALAVSKGEKVPENVDTGANLVTKANMADPKIDALLNPKIK
>NZ_CP025509.1|WP_018244614.1|145063_146617_-|sugar-ABC-transporter-ATP-binding-protein
MIGLEEVSHRHDDSATLKEANRIPAGSPILELKGLQKNYGHVQALKPATLTFLAGEIHAIVGENGAGKSTLIKLLTGVITRTAGEVLWCGQPVGLSTPNEAIARGINAVHQEVVLCRHLTVAANLFLGDEVNRYGLMRKKQMEKMAQAVLDDLGFGLPAGALLSSLTIGQQQLVATARAAMRGTQFLIFDEPTAYLTRQESAQLFKLIRRLQGEGVTIVYISHRMEEVFELADRVSVLRDGTHVGTRLIGETNDAELIALMINRSIEQIYHKEEIAIGETIVEVKGLSGPGFEDVSLSVKAGQIVGLYGLIGAGRSEFALGLYGRQPISAGEIHWRGKRVDIRNERTAMELGIALAPESRRDQGLCLNLPIGLNINLPVFGRLSHGPVINHARESANADKQIRDLSIKTPSRRVPASSMSGGNQQKIVIGKWLSHGARLFIFDEPTVGVDVGTKAEIYRLFAKLLKDGAGIILISSYLPEVYELADRLHVFRAGKIVASHDFHAATHEQVLSEAIGV
>NZ_CP025509.1|WP_018244613.1|144061_145036_-|ABC-transporter-permease
MTATPTEIVAPPPRRKMNILFGLTLIGLLIFLWIVLAVVTPSFWTPLNISNLLRQGAMTAILALGQTFVIITAGIDLSVGAIVGFCTVIIAWLLQAGVPVWGAIALTLLMGVAIGAFHGFGIVHMGLPPFIITLATLTSLRGIGLLITNGSTINITNEGFSNFARADLLSIPSLFWMVILVAVPSFIFLHLSRWGRYLFAVGSNAEAARLSGVNVKGMIYLAYILSASFAAFVGVLLASRIAIGNATQADGWELQAIASSVIGGTSLFGAVGSVHGPLIGAFILATINNGANLLNVNSFWQRIITGLLIIVIVFFDQLRRRKSN
>NZ_CP025509.1|WP_018244612.1|142974_143994_-|zinc-binding-alcohol-dehydrogenase-family-protein
MKAVLCREPGVLDIVERPSPAAPAAGWVRLAVSHVGICGTDYHIFEGKHPFLEYPRVMGHEISATVLEAGDGVAMAVGTPVIVNPYLSCGQCIACRQDKPNCCTNIKVLGVHTDGAFCEEISVPAENLYAAKGVSLEAAATTEFLAIGAHAVRRSMTGAGKRALVIGAGPIGLGAAIFSRIAGHEVTLLDTSTERLQMASERFGFISGIVANEATAEAVREKTNGDGFDVVFDATGYGPSMEKAFSFVAHGGALVLVSVVKDDIRFSDPEFHKREMMVIGSRNATRVDFEHVADSIAKGLVPVDKLITHRTTLADAPRDLARWAHEKNGLIKAVISVGA
>NZ_CP025509.1|WP_018244611.1|142329_142707_-|hypothetical-protein
MKMRIASLAMTIALTMPLVVPARAQVVIQEGQGSEFYADPDDNQTETDFLQRWNRHHDQRSGWRPGRDNFGPDDAVRLLERRGYRVRDVRDVGERYLIRAWRDGDDLLVSVSRRGEIMGVVHDRE
>NZ_CP025509.1|WP_018241007.1|141016_142120_-|IS4-family-transposase
MSDLLQALDWDELVGRLGSAEELEASARKAGALLRKRQVGGAVDLLRLCFAYVLGRFSLRTLAAWADQRALASMSDVAMLKRLKASADWVGCLVSELLAERCPEAFAGVHSDLRLMAVDATVVAPPGPKRAYWMVHTVFDLSRLTLCSVEVTDRHEAERLSRGVKAGELRIADRAHAKAADLAEVVEAGADFLVRAPSNYPRLLDSDGQLLDRLALCREAGEKGMLDRCVMIQDGKSKVEAAARVVILPLPPEAAEKARRRARRLAAKARYRPSQAGIEMAGYLVLLTSLTADDWPPERLASTYRLRWQIELAFKRMKSLIGLEDLRAKDADLARLWINTALLAALLAEDDLPALDPEAPDSLPLAA
>NZ_CP025509.1|WP_018244610.1|139985_140714_+|copper-homeostasis-protein-CutC
MTILLEVCVDSAEGLAAAIEGGAGRIELCSALELGGLTPLPSLMKIAARAPIPVYAMIRPHAGPFIFDGADEEAMMIDIDAVRAAGLAGVVIGANRPDGTLDMPLIHRLKAHAAGLGSTLHRAFDLVPDADQALEQAVELGCERILTSGCALKATDGLDTLKRISAKAAGRIAIMPGSGIRPANVGEILQATGAREVHGSCSSPIESADPRAVAFGFEAKSTNKTDVAVVRQMRRAIEAVAG
>NZ_CP025509.1|WP_026188604.1|138741_139989_+|LysR-family-transcriptional-regulator
MHLGALFIASHVLTSGSVRETARRFQLSPSTVSTAIHNLETELAMKLTERASGELATLIASGRVLEGLEPIMAAIAELGQWAGHDGSAAGINEAWASRIPVKIVTMERFLEVADQGSINRAARRLRLGQPQLSLQLANLEKFLGHRLFERQAQGSVLTEEGRRAYQIFMAISQAWNDLKSSADERYRRTARSLRIGSIIPTGSESWVARCLGTLVSEWNARRNNNAISLVSMTADDLREALKSGRIDVAILDSVFGLENFRHRELLQTDMVVIAPPDSTETSVADLVAGHPICMPSPRTGLGHAAMAFSYERAPNWRLRGQDITAADSLPVIVDLVANHGYVSFLGRVSAMPIADKVRIVDLDEHLPMSYHVAFNHRKAAADACTVIIEVAARITSETVARTIRPTDAGARETAA
>NZ_CP025509.1|WP_018244618.1|149541_151044_-|altronate-dehydratase
MDKLPWIILSAGDNVAVATAAIAPGSTVAGIQTREKIDPGHKVAIADIPLGSPVVKYGQAIGRTTAEVKAGDHVHSHNLHFENDRLAATANSAPETATTDDKARTFMGYRRADGRAATRNYIGIIASVNCSTTVCRAIADEANRTILPHYEGIDGFVPIVHDQGCGMSSTGDGMNVLHRTLAGYTRHVNFGGVLMIGLGCEVNQLTLYGQSGAGASKRHFNIQDAGGSRRAVERAMGMLREIAADVGKERRVAMSIGEIIIGLQCGGSDGFSGITANPALGVAADLLAAAGGTAILSETSEIYGAEHLLRSRAVSDEVAKKLDDKIAWWEDYVALHGASLDNNPSPGNKRGGLTTILEKSLGAVAKGGRSPLTAVYGYAERVTAPGLVFMDTPGYDPVSATGQVAGGANMIAFTTGRGSCFGCRPAPSLKLSSNSALYASMEEDMDIDCGTIATGDATISGKGREIFDLIVDTASGKKTKSELFGYGDNEFVPWHLGATL
>NZ_CP025509.1|WP_018244619.1|151271_152171_+|GntR-family-transcriptional-regulator
MARQNTVFKEAYNRYAAALRTDTALPSEPEIAAQLGVSRSTARAILTRLSEEGIIRWNKRQKIVLRQPTDHDLFPSEETDSLHDIIERSFMQRILADDAAPGMQINELELAREIGTGTTSVREFLIRFSRFGLIEKRPNSHWTLKGFTREFALELADVREMFELHSAAEFGRLSRDNQSWADLAAIRDEHHAMLADINQRFKDFSVLDERFHLLIHRASKNRFIADFYDAIAIVFHYHYQWNKTAARQRNERAIHEHLDYIAALESRDQAAIETACRAHLHSARQTLLQSLPQIATETA
>NZ_CP025509.1|WP_018517353.1|152400_153525_+|MFS-transporter
MENTFAPSSNIEWTLADFLSTYRYWALFFSSLLLAIGGQGFSTVLPLISQMTGSSAQTIGIFYFGSTLGWVAGAFLAFIVASRHGRSALISPILVCAIVAISFLPAPALWGSPAFLFLFGVVFGTVRAVFPLAIAIFLVGGQPGKIDFGCALTLLSTTILISAFAPIGASWLYGLDLGAVPVVSAFLACLLLAVILLVPAGNLAFDEAPRPRHTPLAPRRRSPLLVAVILFTPPILILLMAFGVHLFQANDADVTSSPVTLLLALLVFGIAVAAFIYLAYWVYRTHGELAGAARSQRLLTPLAGMLIAILVPLGLPVLVMTLGDLLNDRARDRGHGSLISIVWLGIWSFILPPVAIGMIQNAANESYGMGSDAA
>NZ_CP025509.1|WP_018244621.1|153643_155641_+|ABC-transporter-ATP-binding-protein/permease
MADAKLKPKSVDGTEPHGAEKSRQETASTAEVALPPDAIDPDPELTPEEAEQARRRYLLKRFWISARRYWGRGGDKLAWPCTIGLLTLIGMNVGFQYGINLWNRAIFDALEQHNARTVYFLSVVFLPLALGTAALVTTQVALRMMIQRRWRSWLTTAVIARWLASGRYYQLNLIGGDHKNPEARIAEDLRIATEAPVDFISGVIAAFLSASTFIVVLWTIGGALTVTIAGWTVTIPGFLVVTAVLYAAITSSSMTVIGRHFVRVSEAKNQAEAEFRYTLTHVRENGESIALLGGEEEERNDLGKTFANVLRQWALLARQHMRTALVSQGSSLFAPVVPVLLCAPKFLEGSMTLGQVMQAASAFAIVQSAFGWLVDNYPRLADWNACARRIASLMMSLDGLERAEQSNALGRIKRGETEGDAMLSLNDLSVSLDDGTAVVKETQVVIEPGERVLVAGESGSGKSTLVRAIAGLWPWGEGSVNFHADRRLFMLPQRPYIPSGTLRRAVAYPGAADSWTPDEIKAALDKVGLDYLNDKIEEDAPWDQTLSGGEKQRLAFARLLLHHPDIIVLDEATSALDEKSQDKMMQMVIDELPEVTIVSVAHRAELEAFHSRKITLERREGGAKLVSDIDLVPRKRKRNLLSRVLKNPSLPKNSTTSNKDSAVPE
>NZ_CP025509.1|WP_018244622.1|155666_156125_-|winged-helix-turn-helix-transcriptional-regulator
MNEDVLSTPGHLISLAARGFARLSESRLKPLGFGVGQLPVLVALQNGKASTQRDLARFARIEQPPMAQMLARMERDGLIERTRDPADGRSSRIVLTRTAQERMPEAITTLFQGNREALTGFTGAEAGQLVDLLKRLIENLDQIANAEASSGD
>NZ_CP025509.1|WP_018244623.1|156251_156629_+|nuclear-transport-factor-2-family-protein
MSNNDVEMIKRIYASFNARDIDAVLAVLSDDVAWANGMDGGHINGREAVRDYWGRQWAMISPHVEPVAFEETEEGAVAVEVIQSVFDLDGRPLEGQAHGLKDKTVTHIFRMEGDKIVRFDIQDAL
>NZ_CP025509.1|WP_017990167.1|156768_156969_-|hypothetical-protein
MVLLHSADGMAWQSPPKGTSLKTLSEAEEQGFILIRGEFQKRQFRLTELGSDYVERDKRRLEARRL
>NZ_CP025509.1|WP_018517354.1|157297_158113_+|methyltransferase-domain-containing-protein
MSANLDDIRNQQRETWDKFSAGWKKWDSLVLGWLAPFGDAMLRRANLSNGFSVLDIAAGTGEPGLTAAAAIPEGQVVVTDLSENMLTAAAENAARRGLKNFETRLCDAGALPFADASFDAVLCRFGFMFFPDIAAAAREMARVAKPGARVCAAVWSAPAKNPWATTIMGTIARHVDMPPPPSGSPGLFRCAGEGMMVETFKEAGLLDVAVEEVSAMMVHDAPASYWDFMTEIAAPVVAGLSRADAATREKICREVLELALQSVSDGKVHLL
>NZ_CP025509.1|WP_018244626.1|158241_158817_-|AAA-family-ATPase
MGVFVLLLGFPGVGKLTIAKELGSLLSAKIIDNHWFNNPILRLLDEDQTAPLPKGVWEYTGRVRQAVLDAIATYSGPSANFIFTHAGVEGDERSTRTYQQFVDAARQRAAVFVPVRLLCAEEELARRVSSPARRDYLKTTDVETSRNRSQQAVVLDIPHQHALTLDVTFTSPLESAAAIRDHVVTCLPNGS
>NZ_CP025509.1|WP_018244627.1|158880_159321_-|hypothetical-protein
MGYDLHITRKANWFDASPSIALDEWLEYVASDPEIQHDGFAETPAADGGVLRVEQAGICVWKGYSRGENRKNAAWLWWSGDNIVVKNPDQEIRRKMWLIAQSLEAKVQGEEGEYYDHDGEMIVMKAILAPEPSMPPDPKRPWWKFW

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Crispr_ID: NZ_CP025509_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025509_2

639513-639592

Orphan

Consensus_repeat	Method
TGCCGAAAAGTGTGAGCGGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025509_2

>merge|NZ_CP025509|2|639513-639592|CRISPRCasFinder
TGCCGAAAAGTGTGAGCGGTTTTCGGGCAACATCATGCTCCCACTATTAAAGCATGGTGCCGGAAAGTGTGAGCGGTTTT

>NZ_CP025509|2|2|639513-639592|CRISPRCasFinder
TGCCGAAAAGTGTGAGCGGTTTT	CGGGCAACATCATGCTCCCACTATTAAAGCATGG
TGCCGGAAAGTGTGAGCGGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025509.1\|WP_018245046.1\|628308_630087_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
NZ_CP025509.1\|WP_018245054.1\|639631_640555_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP025509.1\|WP_018449328.1\|635292_637230_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP025509.1\|WP_003556974.1\|627104_628100_-\|transporter	unknown	unknown	gnl\|CDD\|213368
NZ_CP025509.1\|WP_018245044.1\|626525_627011_+\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573
NZ_CP025509.1\|WP_018245062.1\|647579_648848_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|225254
NZ_CP025509.1\|WP_003545921.1\|641621_641873_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP025509.1\|WP_018245047.1\|630096_630852_+\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|168351
NZ_CP025509.1\|WP_018245053.1\|637492_639409_-\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|224076
NZ_CP025509.1\|WP_026188640.1\|643533_644142_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379265
NZ_CP025509.1\|WP_018245055.1\|640764_641532_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP025509.1\|WP_018245051.1\|634071_635073_+\|DUF4424-domain-containing-protein	unknown	unknown	gnl\|CDD\|373054
NZ_CP025509.1\|WP_018245063.1\|648854_649928_-\|tartrate-dehydrogenase	unknown	unknown	gnl\|CDD\|273963
NZ_CP025509.1\|WP_032981585.1\|633192_633939_-\|TlyA-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NZ_CP025509.1\|WP_018245056.1\|641875_642811_-\|histone-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|212541
NZ_CP025509.1\|WP_018245061.1\|646075_647551_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|180487
NZ_CP025509.1\|WP_018245049.1\|631945_633196_-\|class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|225174
NZ_CP025509.1\|WP_018245058.1\|643094_643496_+\|thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP025509.1\|WP_018245060.1\|644299_645823_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235870
NZ_CP025509.1\|WP_018245048.1\|630932_631943_-\|membrane-protein	unknown	unknown	gnl\|CDD\|293841

Protein	Function_ID	Function_description	E-value
NZ_CP025509.1\|WP_018245046.1\|628308_630087_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	4.58336e-149
NZ_CP025509.1\|WP_018245054.1\|639631_640555_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	3.64086e-104
NZ_CP025509.1\|WP_018449328.1\|635292_637230_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.05925e-68
NZ_CP025509.1\|WP_003556974.1\|627104_628100_-\|transporter	gnl\|CDD\|213368	cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily. The MIT superfamily of essential membrane proteins is involved in transporting divalent cations (uptake or efflux) across membranes. The ZntB-like subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.40768e-112
NZ_CP025509.1\|WP_018245044.1\|626525_627011_+\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	1.84683e-10
NZ_CP025509.1\|WP_018245062.1\|647579_648848_-\|glycerate-kinase	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP025509.1\|WP_003545921.1\|641621_641873_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	6.83197e-24
NZ_CP025509.1\|WP_018245047.1\|630096_630852_+\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|168351	PRK06023, PRK06023, crotonase/enoyl-CoA hydratase family protein.	3.96873e-162
NZ_CP025509.1\|WP_018245053.1\|637492_639409_-\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|224076	COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism].	0
NZ_CP025509.1\|WP_026188640.1\|643533_644142_-\|hypothetical-protein	gnl\|CDD\|379265	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.	0.000172364
NZ_CP025509.1\|WP_018245055.1\|640764_641532_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.89968e-69
NZ_CP025509.1\|WP_018245051.1\|634071_635073_+\|DUF4424-domain-containing-protein	gnl\|CDD\|373054	pfam14415, DUF4424, Domain of unknown function (DUF4424). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 310 and 361 amino acids in length.	3.44854e-130
NZ_CP025509.1\|WP_018245063.1\|648854_649928_-\|tartrate-dehydrogenase	gnl\|CDD\|273963	TIGR02089, Probable_tartrate_dehydrogenase/decarboxylase, tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively. [Energy metabolism, Other].	0
NZ_CP025509.1\|WP_032981585.1\|633192_633939_-\|TlyA-family-RNA-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	4.77385e-116
NZ_CP025509.1\|WP_018245056.1\|641875_642811_-\|histone-deacetylase-family-protein	gnl\|CDD\|212541	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes eukaryotic as well as bacterial Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. In D. discoideum, where four homologs (HdaA, HdaB, HdaC, HdaD) have been identified, HDAC activity is important for regulating the timing of gene expression during development. Also, inhibition of HDAC activity by trichostatin A is shown to cause hyperacetylation of the histone and a delay in cell aggregation and differentiation.	7.315e-155
NZ_CP025509.1\|WP_018245061.1\|646075_647551_-\|pyruvate-kinase	gnl\|CDD\|180487	PRK06247, PRK06247, pyruvate kinase; Provisional.	0
NZ_CP025509.1\|WP_018245049.1\|631945_633196_-\|class-I-SAM-dependent-RNA-methyltransferase	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	3.32563e-121
NZ_CP025509.1\|WP_018245058.1\|643094_643496_+\|thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	1.95552e-13
NZ_CP025509.1\|WP_018245060.1\|644299_645823_-\|hypothetical-protein	gnl\|CDD\|235870	PRK06834, PRK06834, hypothetical protein; Provisional.	5.40118e-102
NZ_CP025509.1\|WP_018245048.1\|630932_631943_-\|membrane-protein	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	2.13406e-74

>NZ_CP025509.1|WP_018245053.1|637492_639409_-|1-deoxy-D-xylulose-5-phosphate-synthase
MTQLPKTPLLDQVIYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPDDRLIFDVGHQCYPHKILTGRRDRIRTLRQEDGLSGFTRRAESEYDPFGAAHSSTSISAGLGMAIAADLDKSDRRVIAVIGDGAMSAGMAYEALNNAGALDARLIVILNDNDMSIAPPTGAMSAYLARLASGRTYMGFRDFGKKLTAYLGKNIDRAITRAVEHARGYVTGGTMFEEMGFYHIGPIDGHSFDHLLPVLRNVRDNGRGPVLIHVVTQKGKGYPPAEAAADKYHGVNKFDVITGAQARVKPNAPSYTSVFAEALVQEAALDDKIVGITAAMPNGTGLDKLAEAFPSRCFDVGIAEQHAVTFAAGLAAEGYKPFAALYSTFLQRAYDQVVHDVAIQGLPVRFPIDRAGFVGADGPTHAGSFDTAFLTTLPGFVVMAAADEAELKHMVRTAVAYDGGPISFRYPRGEGVGVDMPARGEILQIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEMVITVEEGSIGGFSSHVMHFLATEGLLDNGLKLRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGRGVAVGVAG
>NZ_CP025509.1|WP_018449328.1|635292_637230_+|methyl-accepting-chemotaxis-protein
MSAKNISLNGKLAATFAALILIFVAISAFVYSKATASAAASAEQEKSELLVNQIDDALQAMLEQAVNLRGFILFRSDSTYGDVFANRERMLKAIAAAKQTATGEPQLVEMIDGMQKAADLYFHELAEPQTKARKETDMPIEEVVKIGVNATKGQLDGFRQASAKIKATAREKSNALAAIRADANSDLKTTLLAGGILASLAAAVLAWLMSRTIVRPVVGMTAAMDRLAGGQNDIEVPAVERGDEIGRMAQSVLVFKQAAIEKLRLAGETDRMRDDAERQRRAGDEQKAREEGEIRYAIDALAGGLAELANGDMAGRIQTPFASQYDSLRNDFNHAVEKLQAALQSVGRNASAINAGAGEIRSAADDLAHRTEQQAAAVEQTAAALEEVTTTVRDSAKRAEDVGNLVERTRLGAEKSGEVVRKAVSAMQQIEKSSGEISNIIGVIDDIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSAKAAKEIKALITTSGEQVVAGVGLVGETGKALEVIVSEVQEINHHVNAIVTATREQSIGLQEINTAVNNMDQGTQQNAAMVEEQTAASHALAQEANALDELLRQFKLGQAAPAPRAAVVGTSSRPVASPAHALTRTVAKAFGGRQAAATATVQEEWTEF
>NZ_CP025509.1|WP_018245051.1|634071_635073_+|DUF4424-domain-containing-protein
MLKLFTLIVAAVIASPALANDTMAEVKTGGLIFAQSDDVSMAEEDLFISASEVRVDYIFENSSDKDVESLVAFPMPDISGQVDNNSAISDYDSDNFLHFSTVQDGRPITAKLQQRVVSLGIDVTDEFAKLGIPVLPYSQKTTEALAKLPETVRKDWISRGVVYPMGAGDAAAGVDLVPLWTLRSTYWWRTTFPAKKKVSVEHRYKPAVGGTVAISFLEGGEPKGDRFEEYSRKYCLDGDFVRVAQQRAREAEAGGANYTESWISYVLSTGANWAGPIKRFQLTIDKGKPGSLISFCGSNVQKIGPTTFRMTSEDFDPTRDFDILILNPPETAQ
>NZ_CP025509.1|WP_032981585.1|633192_633939_-|TlyA-family-RNA-methyltransferase
MSDQNTQRLDQLLVSLGLFASRSRARDAVQRGTVRIGGQVVTKAGALFNADAAIEIDDPAQDYVSRAALKLAAALDHFRLDPAGHHCLDVGASTGGFTEVLLLRGAQHVTAIDVGHGQMHPRISGDPRVTNREGLNARNMTAEDIGHPATFIVSDVSFITLKLALAPALEIAEPGAVAILLVKPQFEAGREAIGKGGMLKDPSSAPAVAAELERWFIEDMGWKSLGLIPSPISGGDGNQEFLLAGLKP
>NZ_CP025509.1|WP_018245049.1|631945_633196_-|class-I-SAM-dependent-RNA-methyltransferase
MSTETVTIEKLGAQGDGIASSAGGPVYVPFSLPGETVAIARVKSQGTIMSITTPSPDRQEPPCRHFGPDGVNGTCGGCTLQHMADTPYRAFKRQLVIDALKSKGLTPEVGEIVPARPGERRRVVFAARKTEKDMLVGFNQAESHHIVAIEECPISSAGIIARLPAIRAIAASLATSAEPFRVAVLETLSGLDISVDEVKKLSDPQRRKAIETALGLRGIARVSLNGEILVEPSKPMVEFGGVQVSPPPGSFTQATKPAEEAMAELVIAHAGKAKRIADLFAGSGTFSLRLARIGRVHAVEAEAKALAALDHAARNTQGLKPVTVEKRDLFRRPLMTQEFKPYDAVVFDPPRAGAEFQCQELARSAVKKIVAVSCNPLTLARDLAILVEGGYRITQVTPIDQFLWTSHVEVVATLEK
>NZ_CP025509.1|WP_018245048.1|630932_631943_-|membrane-protein
MPVGKTKRRNPYYHGPVSDHFDGTHFFNPDGIEPLGFRDLLRWQFGGGRERWPQSVPSPYPAAKPDPCVDGEDLRVTMVGHATMLVQVAGLNILTDPVWSERVSPFAFAGPKRVVQPGIAFDDLPPIDLVLVSHNHYDHLDIATLRRLGAKHRPRVVTPLGNDTIIRRAVPDIRTTSMDWGERISHAGISIDAEPAHHWSARGTADRRMALWASFVLSTPAGKIYHVGDTGFHHGINYQAAQQKHGGFRLAILPFGAYEPRWFMKGQHQNPQEAVIGMKLANAAYVAGHHFATFQLTNEAVDAPARALQDAMSEHDIPPERFRPLRAGEVFNVPAV
>NZ_CP025509.1|WP_018245047.1|630096_630852_+|crotonase/enoyl-CoA-hydratase-family-protein
MTDYIIVEQPSAYPGVQSIRFNRPEKKNAITRAMYRTMADALNAANTSPDIRATAFLGTEGCFSAGNDLNDFLAAAMGGRGLEQEILDFLYALVNAEKPVVSGVDGLAVGIGTTIHLHCDLTIASSRSQFRTPFVDLALVPEAGSSLVAPRLMGHQRAFAMLAAGEAFSADEAKEAGLVWKVVESGEVDSLTLGLAAKLAAKPPEALRIARDLIRGNRGEIIARIDEEARHFSARLKSAEARAAFEAFMRR
>NZ_CP025509.1|WP_018245046.1|628308_630087_+|acyl-CoA-dehydrogenase
MYKAPVEEIAFTLKHVAGMDEAISRGLLGDLGEDLVDAILAEAGRFATEEVAPLAEIGDRQGARLIDGEVRLPDGWRDLYRHWIAGGWNGLTAPEAFGGQALPHMLNVAALEMWNSGSMAFALAPTLTMGAIEAVSTHGSAALKDKYLEKMVSGEWTGTMNLTEPHAGSDLGVLKARAERRDDGSYRLFGQKIFITWGEHDAADNIIHLVLARLPDAPAGTRGISLFLVPKFLVNDDGSLGPRNDLFCHSLEHKLGIHGSPTCTMIYGDGKFGGEKGAVGWLVGEENKGLACMFTMMNNARLAVGMQGVAIAEAATQKALAYARERTQGRAPGASGAGMSPIVEHPDVARMLLTMKALTQGARAISYACAHAIDMSHRAGDASRQWQERAALLTPIAKSFSTDAGVDVASLGIQVHGGMGFIEETGAARYLRDARIAPIYEGTNGIQAIDLVTRKLPLSGGDQVKGFIAELREIADGVRRSNLDGFGETAARLDAAIADLEQATAWLMKTLAENSTAEALSGATPYQRLFGLVLTGCYLAKGGLAESADGAAENRIALCRFAAENLLAETAALRDRVVNGAASLAAARILLA
>NZ_CP025509.1|WP_003556974.1|627104_628100_-|transporter
MDTLPVNIPGFVWAYRFSPEEKTAVRLNNSATVAELTADNCFYWLHLNLVDARVPALLDTLDGLTEDAKSALTTRDTHAAITVDEQMLYGTLVDCQRDFAQDTNNLGWLHFAMSDRFLITTRLQPLRSVERARALIEKNPGKFSRPVDLFELLVIEFQRTLIAIVIELTEELNQIEDIVYDSAQRDERRRLAPVRRTVVRLHRHLRTVLALMRRAAAADDDEMPFGFDDVARRLTSRLETVDHDIYALQDRARLLHEEIDSKQSSETNRHLYLLSIMTAFLLPPTLVTGFFGMNTANLPFAVGDYGTEYAVALIVASIAFAWWLLRRVDIL
>NZ_CP025509.1|WP_018245044.1|626525_627011_+|BA14K-family-protein
MIGLRNKIATAVLAAAVVLTGFAPSQAIQMPTAPQVEKSSAVENVQYRRYYRPGYRPGAYYRPGYRPGAYYRPGYYGGYRGYSYYRPGYRHYNGYWYPLAAFGAGAVIGGAIVAQPRYVDPAPRMGSSHVAWCANRYRSYRAYDNTFQPYNGPRQQCYSPY
>NZ_CP025509.1|WP_018245054.1|639631_640555_-|pirin-family-protein
MSFFPGKDPLPGDAFACDAIENLIIPRTSDIGGFQVRRALPSRQRRLVGPFIFFDRMGPAILKPDEALDVKPHPHIGLSTVTYLFDGEIRHRDSLGTEKVIRPGDINLMTAGRGIVHSERTPDNLRGHPLLMSGLQTWLALPNDKEEIDPSFAHTEKSAMPLIETAGVRGRVVIGSFEGMTSPVGVFSDTLYVDLDLQPGAKFPFGAGHEERAVYVLSGEVVISGDRFAADQLLVFRPGDAITLEAGRDGCHLMLFGGAALNSKRYIWWNFVSSSKERIEQAKEEWRTGRFDIVPGDEEEFVPLPEG
>NZ_CP025509.1|WP_018245055.1|640764_641532_-|SDR-family-oxidoreductase
MTDRLKGKVAIISGGATGMGGAASKLFAAEGARVAIIDRNGQAAAETVQAIRDAGGEAEYWTADVSDEAAVIAAVAGVEERYGAVTVLFNHAGTIVIKPFLETTLQEWDWLHAVNVRSMFLMTKAVLPKMIESGGGSIVCTSSISAVAATPMEVLYDTTKGAVHMFARAIAVEFRDRNIRCNAVCPGFIRTPHGLREVADLQALGVDVSDAAIAAQQGRIGEPEDVARAALYLASDESSFVNGAHLFVDNGFTAI
>NZ_CP025509.1|WP_003545921.1|641621_641873_-|exodeoxyribonuclease-VII-small-subunit
MTDSAKPEVSGLSFEKAVAELESIVARLERGDVALDESIEIYERGEALKKHCETLLSAAENRIEKIRLDRAGKPQGVEPLDGA
>NZ_CP025509.1|WP_018245056.1|641875_642811_-|histone-deacetylase-family-protein
MSTRLYEHPIFLEHVTPAGHPERSDRIRAINVALEHPNFERLERRQAPQANEDAVLLAHPEEHLIAVMREIPEEEGEINQIEADTYASSKSLQAALTGIGGAMAAVDDVFTGRADNVFVAARPPGHHAEKMTAMGFCFFNNAAIAARHAQRAHGAERIAIVDWDVHHGNGTQDIFWDDASVLFCSTHQMPLYPGTGAKDEKGTHNTIVNAPLSPNVGSDHFREAFKSRVLPALDDFRPDLIIISAGFDAHHRDPLAQINLTGEDFDWATGRVLELADRHAKNRVVSLLEGGYDLEGLAESAGMHILRMMKG
>NZ_CP025509.1|WP_018245058.1|643094_643496_+|thioesterase
MSQSKRPDVAEIRVPFRDVDMTGQMFLASYISYAESVLASFWSSRPDVDDEPVYSPSKVSCMLHRPLHYDELATFTATVDKIGMHSIGLLVAIDTGEERAAEVEIIWQARTREDQSPASLPEETRDWLYRFLD
>NZ_CP025509.1|WP_026188640.1|643533_644142_-|hypothetical-protein
MIRTKVDTLFKQCCAFHLQFFPDGEALSKLCNLQDRIERDSDAPLSRVPAKSLHMTVVTLVNAAAQFSIPNDEVWKLNGERWKEIVERLVEETPPFELHFHEVAASEAAVFVKAEEPPELRRLRSAISHAICFEQWCPTPPRIAHITLFRFFAEDRLPAVNFDAGLLPTGLKVGSLKLLEERVYPSVEINILSEPLLRGKST
>NZ_CP025509.1|WP_018245060.1|644299_645823_-|hypothetical-protein
MNNRHPTSFLFDVVIAGAGPVGLLLACELRLAGVSVLVLEQAESPHSPLKKLPFGMRGLTLPTIEAFYRRGLLDSLEAPGRQAKPEGKPRKQAGHFAGIPFDYDRINPSDWAYRLPSPADSNMAAEMERVETVLADRAQSIGVEIRRGVRVEGLAQSADGVMIQAGDQSFEGRWLVGCDGGRSMVRKGGGFSFVGTDPEFTGYSVQVDLADPEKLKLGRQLTPTGMYFQTQPGHFGMVEFDSGASHRTGPITLAHVQAVLRRISQTDVTLTALRVATSWTDRAQQATEYRKGRVLLAGDAAHIHSPLGGQGLNLGLGDAMNLGWKLAATVRGEAPDGLLDSYFSERHPIGEQILAWSRAQVSIMRPSPHARAMESIIRDLIATRDGATYFADRVWNASMRYDLGDGHALVGRSVPDFEWTDGTRLAALLADGTGLLIDFGDRAPLRSIARRWDDRVKYVEGEVKDRLGLTALLVRPDGIVAWACEGEVNPEDAVEAGSRWFAVHDGG
>NZ_CP025509.1|WP_018245061.1|646075_647551_-|pyruvate-kinase
MHRNRRAKIVATVGPASASPDMLKSLFEAGVDTFRLNFSHGSHEDHAAVFRSIRALERETGRPIGILQDLQGPKIRVGRIRNGAISVSKGDRIRFVLGTDEGIADSIPLPHREIFAAVKPGDDLLIDDGRVRVRIDGVGAETITAEVVVGGVISDRKGVNIPGAILDISPLTEKDRRDLEYGLELGVDWVALSFVQKASDMIEARALVSQRAGLIAKIEKPSALDQIDDIIRLSDGIMVARGDLGVEIPPEEVPGRQKELIRACRLAVKPVIVATQMLDSMVAAPTPTRAEASDVAMAIYDGADAVMLSAESATGRFPRETVEIMDRIIRSTEGHKLYRSLIAASEPEIEPSPPHAVASAAADLATAINAPLIAAFTSSGTTAARIARKRPSLPILAITPDELVSRQLCLLWGAVSIHSKEIVTYEDTIDYARQMASRSGLSSPHDNIVVVAGIPFGRPGTTNNLRVVQLKEEAPSEAVLDLHSLSDRAAP
>NZ_CP025509.1|WP_018245062.1|647579_648848_-|glycerate-kinase
MSWTDQKARETLHQIFDAAVESASPQRAVLENLPDKPKGRCIVVGAGKASAAMAAALDSAWPNVDLSGVVVTRYGHAVPAGRIRIIEASHPVPDAMSERAAADVLQAVRGLTPDDLVVALVSGGGSALLVAPAGGMTLADKQSVNRALLASGATITEMNAVRKHLSRIKGGRLALAAQPAKVVTLVISDVPGDDPASIASGPTIADESTIDEVRGIISRYRIVLPDTARSVLESGDETPKPADLASDVRIIAAPSLALDSAAKAAANAGLQTLVLGDAIEGEARELGTVMAGIALSAKTKGLPVRGPAVLLSGGEGTVTIGCEAAGRGGRNTEFLLGLAVALKGHAGIWAIAGDTDGIDGTEDAAGAVVTPDTLERGRKKGLDARAYLASHDSYSFFDEIGDLVKTGPTLTNVNDIRAILIV
>NZ_CP025509.1|WP_018245063.1|648854_649928_-|tartrate-dehydrogenase
MREYAIATIPADGIGPEVIAAGTRVLAAIEKREGGIKFNLENFDWGSDYYKKHGVMMPTDGLKQLKKFDAIYFGAVGAPDVPDHVTLWGLRLPICQGFDQYANVRPTKILPGITPPLRNCGPGDLDWVIVRENSEGEYSGHGGRAHRGLPEEVGTEVAIFTRVGVTRIMRYAFKLAQSRPRKFLTVVTKSNAQRHGMVMWDEIAAEVAEEFPDVTWDKMLVDAMTVRMTLNPRSLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIHGSAFDITGKGIANPVATFWTAAQMLDHLGETDASARLMRAVERVTGAGILTPDVGGTANTKEVTDAVVDEIHTSNV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025509_1	1.1\|149469\|28\|NZ_CP025509\|CRISPRCasFinder	149469-149496	28	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	168375-168402	5	0.821
NZ_CP025509_2	2.1\|639536\|34\|NZ_CP025509\|CRISPRCasFinder	639536-639569	34	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	179879-179912	9	0.735

1. spacer 1.1|149469|28|NZ_CP025509|CRISPRCasFinder matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 5, identity: 0.821

gtccgggattgcgtacttcaaatcaatc	CRISPR spacer
gtccgggattccgcacttcaaatcacgg	Protospacer
********** **.***********

2. spacer 2.1|639536|34|NZ_CP025509|CRISPRCasFinder matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 9, identity: 0.735

cgggcaacatcatgctcccactattaaagcatgg	CRISPR spacer
cggacaacatcatgctccaactatataatttaga	Protospacer
***.************** *****  ** .  *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1403173 : 1413883

Bacillus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032980139.1\|1403173_1404427_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.0e-12	34.1
WP_003547334.1\|1404803_1405433_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	9.4e-63	59.2
WP_017963839.1\|1405736_1407014_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.7e-132	58.4
WP_017959927.1\|1407416_1409834_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.5e-204	49.4
WP_003558438.1\|1410040_1410316_+	HU family DNA-binding protein	A0A172Q061	Acinetobacter_phage	7.1e-07	34.1
WP_026188360.1\|1410689_1411589_+	DMT family transporter	NA	NA	NA	NA
WP_032983574.1\|1411684_1413883_+	esterase-like activity of phytase family protein	M4SLV1	Cyanophage	1.6e-61	37.3

DBSCAN-SWA_2

1687223 : 1700605

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026188370.1\|1687223_1688237_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.6e-24	42.6
WP_018241794.1\|1688255_1689113_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.3e-34	38.5
WP_018241795.1\|1689109_1689826_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.6e-40	47.0
WP_003538990.1\|1690009_1690201_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.9e-09	72.1
WP_018241796.1\|1690252_1690864_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_018241797.1\|1690860_1691688_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	5.2e-53	46.5
WP_018241798.1\|1691887_1693171_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-97	45.3
WP_018241799.1\|1693175_1693949_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-23	30.2
WP_018241800.1\|1693945_1694599_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.5e-15	34.1
WP_026188371.1\|1694839_1696444_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	5.1e-12	29.2
WP_018241802.1\|1696592_1697465_-	ATP-binding protein	NA	NA	NA	NA
WP_003558894.1\|1697671_1698019_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.4e-12	39.1
WP_018241803.1\|1698064_1700605_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	8.2e-57	48.2

DBSCAN-SWA_3

1930666 : 1940932

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018242012.1\|1930666_1933588_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.1
WP_018242013.1\|1933871_1934381_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.6e-44	72.9
WP_018242015.1\|1934481_1935129_-	MarC family protein	NA	NA	NA	NA
WP_018242016.1\|1935365_1938203_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	2.0e-75	42.2
WP_018242017.1\|1938855_1939131_-	hypothetical protein	NA	NA	NA	NA
WP_018242018.1\|1939267_1939762_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	6.1e-25	37.2
WP_003586475.1\|1939820_1940393_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.7e-42	52.0
WP_003559389.1\|1940422_1940932_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	4.2e-45	59.4

DBSCAN-SWA_4

2923460 : 2937263

Vibrio_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011652885.1\|2923460_2925518_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.7e-36	33.6
WP_018242977.1\|2926446_2927484_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	9.2e-15	66.7
WP_018242978.1\|2927746_2928934_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	2.6e-37	28.3
WP_018242979.1\|2929098_2929827_-	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	1.2e-48	42.0
WP_018242980.1\|2929875_2931756_-	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.9e-72	34.6
WP_018242981.1\|2931755_2933765_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.9e-89	41.9
WP_018242982.1\|2934434_2935325_+	hypothetical protein	NA	NA	NA	NA
WP_018242983.1\|2935328_2935784_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	6.9e-15	38.7
WP_026230698.1\|2936057_2937263_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.1e-40	33.2

DBSCAN-SWA_5

3791623 : 3801556

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018243693.1\|3791623_3792334_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	2.3e-49	48.7
WP_026188535.1\|3792333_3792690_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_018243695.1\|3792686_3793415_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.9e-39	37.6
WP_018243696.1\|3793419_3794640_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	5.4e-14	29.7
WP_026188536.1\|3794744_3795719_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	7.3e-139	75.1
WP_018243698.1\|3795806_3798011_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	5.6e-211	51.4
WP_018243699.1\|3797989_3798394_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	6.5e-17	43.1
WP_018243700.1\|3798408_3798630_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	7.9e-17	52.1
WP_018243701.1\|3799282_3801556_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	7.4e-126	41.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP025506

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

84649 : 93758

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018247003.1\|84649_85705_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-27	35.0
WP_018247002.1\|85704_86484_+	glycerophosphodiester phosphodiesterase	A0A173GBD0	Staphylococcus_phage	1.4e-07	34.3
WP_018247001.1\|86467_87472_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	5.1e-18	28.5
WP_018247000.1\|87471_88281_+	inositol phosphatase	NA	NA	NA	NA
WP_018246999.1\|88356_90015_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.8e-20	37.8
WP_018246998.1\|90143_91016_-	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA
WP_018246997.1\|91078_92173_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_018246996.1\|92184_92967_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-17	31.6
WP_018246995.1\|92963_93758_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-16	31.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP025510

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11535 : 81319

Streptococcus_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104891261.1\|11535_12240_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_104891262.1\|12786_13946_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	4.0e-19	31.2
WP_011654595.1\|14554_15259_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.1e-25	37.3
WP_077988783.1\|15631_16291_+	response regulator transcription factor	NA	NA	NA	NA
WP_077988782.1\|16287_17349_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_158081473.1\|19906_20203_+	hypothetical protein	NA	NA	NA	NA
WP_108565382.1\|22690_22942_+	hypothetical protein	NA	NA	NA	NA
WP_104891263.1\|23438_23852_+	hypothetical protein	NA	NA	NA	NA
WP_158279264.1\|24503_24857_+	hypothetical protein	NA	NA	NA	NA
WP_158081463.1\|25253_25394_+	hypothetical protein	NA	NA	NA	NA
WP_077988539.1\|25390_25714_+	hypothetical protein	NA	NA	NA	NA
WP_077988540.1\|25828_26143_+	hypothetical protein	NA	NA	NA	NA
WP_077988541.1\|27269_27464_-	hypothetical protein	NA	NA	NA	NA
WP_077988542.1\|28030_28912_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_104891264.1\|29271_29976_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_158081469.1\|30486_31887_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_077988773.1\|32179_34129_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.7e-36	40.4
WP_104891311.1\|34130_35246_-	efflux RND transporter periplasmic adaptor subunit	A0A140XAI1	Dickeya_phage	6.4e-14	42.1
WP_011654595.1\|36009_36714_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.1e-25	37.3
WP_104891263.1\|36924_37338_-	hypothetical protein	NA	NA	NA	NA
WP_104891266.1\|37748_38429_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_077988841.1\|39606_40689_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_104891262.1\|40726_41885_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	4.0e-19	31.2
WP_104891268.1\|42532_42724_+	hypothetical protein	NA	NA	NA	NA
WP_104891264.1\|43652_44357_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_077988233.1\|44795_45491_-	conjugal transfer ATPase VirC1	A0A0A8IL09	Aurantimonas_phage	3.2e-11	29.9
WP_104891270.1\|48819_49728_+	hypothetical protein	NA	NA	NA	NA
WP_064246079.1\|49895_50480_-	UPF0149 family protein	NA	NA	NA	NA
WP_104891271.1\|50793_51498_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_077988064.1\|51847_52168_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.7e-18	47.5
WP_158081451.1\|52239_52395_-	hypothetical protein	NA	NA	NA	NA
WP_077988065.1\|52552_54241_+	type III effector HopG1	NA	NA	NA	NA
WP_104891262.1\|54371_55531_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	4.0e-19	31.2
WP_077988083.1\|55862_56312_-	DUF192 domain-containing protein	NA	NA	NA	NA
WP_104891261.1\|56891_57596_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_104891272.1\|60515_65540_-	AAA family ATPase	NA	NA	NA	NA
WP_011654595.1\|69118_69823_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.1e-25	37.3
WP_158279264.1\|70374_70728_+	hypothetical protein	NA	NA	NA	NA
WP_104891273.1\|70780_71485_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_077988119.1\|71736_72387_+	porin family protein	NA	NA	NA	NA
WP_077988120.1\|72766_73024_+	hypothetical protein	NA	NA	NA	NA
WP_104891264.1\|73345_74050_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_077988544.1\|74629_75286_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.3e-16	26.7
WP_104891275.1\|77114_77819_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_011654595.1\|80614_81319_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.1e-25	37.3

DBSCAN-SWA_2

93246 : 186449

Mycobacterium_phage(41.18%)

transposase,integrase

attL 122911:122970|attR 160141:160650

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104891314.1\|93246_93999_+\|transposase	IS6-like element ISRle39A family transposase	A0A0N9RU54	Staphylococcus_phage	6.0e-32	37.7
WP_065279116.1\|102626_104150_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_104891315.1\|104348_105101_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	4.6e-32	39.4
WP_104891279.1\|105307_106576_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.3e-92	45.9
WP_104891280.1\|108823_109528_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_104891281.1\|109632_110901_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.3e-92	45.9
WP_158672604.1\|111287_111431_+	hypothetical protein	NA	NA	NA	NA
WP_072642540.1\|111435_111903_+	nuclease	NA	NA	NA	NA
WP_104891282.1\|112113_112341_+	hypothetical protein	NA	NA	NA	NA
WP_104891283.1\|112337_112625_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_104891284.1\|114841_115456_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_104891285.1\|115473_116640_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_104891286.1\|116629_117166_-	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
WP_104891287.1\|117192_120519_-	Ti-type conjugative transfer relaxase TraA	V5UQN3	Mycobacterium_phage	1.1e-13	34.1
WP_104891288.1\|120773_121016_+	TraC family protein	NA	NA	NA	NA
WP_104891289.1\|121497_122766_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.9e-93	46.2
122911:122970	attL	NA	NA	NA	NA
WP_104891290.1\|123925_128932_-	shikimate kinase	NA	NA	NA	NA
WP_077988445.1\|129289_129610_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	3.9e-17	44.4
WP_104891291.1\|131522_132539_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_104891292.1\|132528_133095_-	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
WP_104891293.1\|133251_134346_+	hypothetical protein	NA	NA	NA	NA
WP_104891294.1\|137898_145224_+	AAA family ATPase	Q7Y5U5	Haemophilus_phage	1.2e-12	26.7
WP_104891295.1\|145759_146464_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_104891296.1\|149346_149940_+	recombinase family protein	A0A219Y912	Aeromonas_phage	2.2e-21	34.6
WP_104891297.1\|151122_152225_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.0e-11	29.0
WP_104891298.1\|152338_152917_-	hypothetical protein	NA	NA	NA	NA
WP_104891299.1\|153086_153518_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_104891300.1\|153690_154908_-	replication initiation protein RepC	L7TKN6	Rhizobium_phage	2.7e-21	30.5
WP_131618386.1\|157114_158383_+	hypothetical protein	NA	NA	NA	NA
WP_104891283.1\|160387_160675_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
160141:160650	attR	NA	NA	NA	NA
WP_104891282.1\|160671_160899_-	hypothetical protein	NA	NA	NA	NA
WP_072642540.1\|161109_161577_-	nuclease	NA	NA	NA	NA
WP_158672604.1\|161581_161725_-	hypothetical protein	NA	NA	NA	NA
WP_104891281.1\|162111_163380_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.3e-92	45.9
WP_104891280.1\|163484_164189_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_104891302.1\|164221_166243_-	type IV secretion system ATPase VirD4	NA	NA	NA	NA
WP_104891279.1\|166437_167706_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.3e-92	45.9
WP_104891315.1\|167912_168665_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	4.6e-32	39.4
WP_065279116.1\|168863_170387_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_158672605.1\|171436_178921_-	type III effector protein XopAD	Q7Y5U5	Haemophilus_phage	7.4e-13	26.2
WP_104891314.1\|179016_179769_-\|transposase	IS6-like element ISRle39A family transposase	A0A0N9RU54	Staphylococcus_phage	6.0e-32	37.7
WP_104891278.1\|179927_180650_-	response regulator	NA	NA	NA	NA
WP_131618399.1\|180769_180970_+	hypothetical protein	NA	NA	NA	NA
WP_104891277.1\|181230_182232_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_104891313.1\|182228_183404_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_077988073.1\|183603_184386_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_077988072.1\|184413_185088_-	type IV secretion system protein	NA	NA	NA	NA
WP_104891304.1\|185180_186449_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.9e-92	45.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP025505

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP025509

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP025506

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP025510

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection