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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP026756 Klebsiella aerogenes strain AR_0062 chromosome, complete genome 2 crisprs cas3,csa3,DEDDh,DinG,WYL 0 0 3 0
NZ_CP026757 Klebsiella aerogenes strain AR_0062 plasmid tig00000053_pilon, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP026758 Klebsiella aerogenes strain AR_0062 plasmid tig00000058_pilon, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP026760 Klebsiella aerogenes strain AR_0062 plasmid unnamed4 1 crisprs DEDDh 1 1 1 1
NZ_CP026759 Klebsiella aerogenes strain AR_0062 plasmid tig00000059_pilon, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP026756
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026756_1 1759221-1759335 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026756_2 4513847-4513961 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2226022 : 2268474 51 Salmonella_phage(40.0%) terminase,tail,holin NA
DBSCAN-SWA_2 3150743 : 3209633 75 Klebsiella_phage(17.24%) terminase,tail,holin NA
DBSCAN-SWA_3 4836301 : 4907804 84 Cronobacter_phage(22.03%) tail,head,transposase,holin,tRNA,integrase attL 4856752:4856798|attR 4904904:4904950
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP026757
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2463 : 49878 57 Burkholderia_phage(21.43%) integrase,protease,transposase attL 23941:23956|attR 50270:50285
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP026760
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026760_1 61035-61116 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP026760_1 1.1|61060|32|NZ_CP026760|CRISPRCasFinder 61060-61091 32 NZ_CP026760.1 60818-60849 0 1.0

1. spacer 1.1|61060|32|NZ_CP026760|CRISPRCasFinder matches to position: 60818-60849, mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP026760_1 1.1|61060|32|NZ_CP026760|CRISPRCasFinder 61060-61091 32 NZ_CP026760 Klebsiella aerogenes strain AR_0062 plasmid unnamed4 60818-60849 0 1.0
NZ_CP026760_1 1.1|61060|32|NZ_CP026760|CRISPRCasFinder 61060-61091 32 NZ_CP026760 Klebsiella aerogenes strain AR_0062 plasmid unnamed4 61060-61091 0 1.0
NZ_CP026760_1 1.1|61060|32|NZ_CP026760|CRISPRCasFinder 61060-61091 32 NZ_CP014747 Klebsiella aerogenes strain FDAARGOS_139 plasmid unnamed 22667-22698 0 1.0
NZ_CP026760_1 1.1|61060|32|NZ_CP026760|CRISPRCasFinder 61060-61091 32 CP038007 Klebsiella phage 020009, complete genome 28-59 0 1.0
NZ_CP026760_1 1.1|61060|32|NZ_CP026760|CRISPRCasFinder 61060-61091 32 NZ_CP028794 Klebsiella pneumoniae strain WCHKP040035 plasmid p1_040035, complete sequence 11803-11834 1 0.969
NZ_CP026760_1 1.1|61060|32|NZ_CP026760|CRISPRCasFinder 61060-61091 32 MT090961 Klebsiella pneumoniae strain KP18-2079 plasmid pKP18-2079_54kb, complete sequence 54750-54781 1 0.969
NZ_CP026760_1 1.1|61060|32|NZ_CP026760|CRISPRCasFinder 61060-61091 32 NZ_CP042508 Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence 90250-90281 10 0.688
NZ_CP026760_1 1.1|61060|32|NZ_CP026760|CRISPRCasFinder 61060-61091 32 NZ_CP040893 Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence 72763-72794 10 0.688

1. spacer 1.1|61060|32|NZ_CP026760|CRISPRCasFinder matches to NZ_CP026760 (Klebsiella aerogenes strain AR_0062 plasmid unnamed4) position: , mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

2. spacer 1.1|61060|32|NZ_CP026760|CRISPRCasFinder matches to NZ_CP026760 (Klebsiella aerogenes strain AR_0062 plasmid unnamed4) position: , mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

3. spacer 1.1|61060|32|NZ_CP026760|CRISPRCasFinder matches to NZ_CP014747 (Klebsiella aerogenes strain FDAARGOS_139 plasmid unnamed) position: , mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

4. spacer 1.1|61060|32|NZ_CP026760|CRISPRCasFinder matches to CP038007 (Klebsiella phage 020009, complete genome) position: , mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

5. spacer 1.1|61060|32|NZ_CP026760|CRISPRCasFinder matches to NZ_CP028794 (Klebsiella pneumoniae strain WCHKP040035 plasmid p1_040035, complete sequence) position: , mismatch: 1, identity: 0.969

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttatttgtg	Protospacer
*************************.******

6. spacer 1.1|61060|32|NZ_CP026760|CRISPRCasFinder matches to MT090961 (Klebsiella pneumoniae strain KP18-2079 plasmid pKP18-2079_54kb, complete sequence) position: , mismatch: 1, identity: 0.969

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttatttgtg	Protospacer
*************************.******

7. spacer 1.1|61060|32|NZ_CP026760|CRISPRCasFinder matches to NZ_CP042508 (Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence) position: , mismatch: 10, identity: 0.688

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
attgcttcgtgattaatcattctttgttctcc	Protospacer
. * .******** ****.*********. . 

8. spacer 1.1|61060|32|NZ_CP026760|CRISPRCasFinder matches to NZ_CP040893 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence) position: , mismatch: 10, identity: 0.688

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
attgcttcgtgattaatcattctttgttctcc	Protospacer
. * .******** ****.*********. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 732 : 63900 68 Klebsiella_phage(87.5%) capsid,head,tail,terminase,portal NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP026760.1|WP_049061895.1|46888_47140_-|hypothetical-protein 46888_47140_- 83 aa aa NA NA NA 732-63900 yes