CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019456	Escherichia coli strain FHI_NMBU_03 plasmid pFHI_NMBU_03_1, complete sequence	0 crisprs	DEDDh	0	0	1	0
NZ_CP019455	Escherichia coli strain FHI_NMBU_03 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh,WYL,DinG	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8033 : 95465

Bacillus_phage(21.43%)

protease,integrase,transposase

attL 17353:17367|attR 95509:95523

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021576052.1\|8033_8774_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	1.6e-24	57.6
WP_001523382.1\|9993_10272_+	hypothetical protein	NA	NA	NA	NA
WP_021572440.1\|10326_10854_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_024244218.1\|10934_11519_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_158666800.1\|11654_14165_+	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_021572443.1\|14293_15025_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_021572444.1\|15060_15648_+	hypothetical protein	NA	NA	NA	NA
WP_104934200.1\|15665_16214_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_021572446.1\|16233_16755_+	fimbrial protein	NA	NA	NA	NA
WP_021572447.1\|16777_17338_+	fimbrial protein	NA	NA	NA	NA
17353:17367	attL	NA	NA	NA	NA
WP_104934201.1\|17427_18408_+	hypothetical protein	NA	NA	NA	NA
WP_064733215.1\|19495_20134_+	EAL domain-containing protein	NA	NA	NA	NA
WP_021572451.1\|20228_24137_+	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	1.3e-157	31.7
WP_021572452.1\|24305_24815_+	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_021572453.1\|24801_27402_+	hypothetical protein	NA	NA	NA	NA
WP_021572454.1\|27461_29573_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	3.0e-52	30.8
WP_001523401.1\|29586_30999_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_021572455.1\|31925_32465_+	chorismate mutase	NA	NA	NA	NA
WP_024193543.1\|33147_34050_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_001523408.1\|34139_35249_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_104934202.1\|35788_36739_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_001523410.1\|36850_38038_+	efflux RND transporter periplasmic adaptor subunit	A0A140XAI1	Dickeya_phage	6.0e-10	55.7
WP_001523412.1\|38034_39975_+	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	2.6e-34	38.6
WP_032144220.1\|39978_41349_+	TolC family protein	NA	NA	NA	NA
WP_011076463.1\|43070_43853_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.7e-138	99.2
WP_104934203.1\|43849_44872_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.9e-199	98.8
WP_000450492.1\|46903_48097_-	hypothetical protein	NA	NA	NA	NA
WP_021572460.1\|49857_50151_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	3.8e-43	89.7
WP_001318220.1\|52820_53936_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_128969752.1\|53949_57735_+	salmochelin/enterobactin export ABC transporter IroC	W8CYL7	Bacillus_phage	8.2e-45	29.8
WP_000933675.1\|57838_59068_+	catecholate siderophore esterase IroD	NA	NA	NA	NA
WP_000271277.1\|59152_60109_+	catecholate siderophore esterase IroE	NA	NA	NA	NA
WP_001259003.1\|60153_62331_-	siderophore salmochelin receptor IroN	A0A0P0I887	Acinetobacter_phage	5.6e-06	32.5
WP_000076221.1\|62634_62895_-	hypothetical protein	NA	NA	NA	NA
WP_021541660.1\|64355_65840_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_104934204.1\|66024_66975_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_004132711.1\|70178_70412_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.1e-16	56.6
WP_104934205.1\|70431_79014_-	cyclic beta 1-2 glucan synthetase	NA	NA	NA	NA
WP_024244225.1\|81127_81799_-	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	9.1e-32	35.1
WP_021541665.1\|81930_82344_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_021541666.1\|82442_83435_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_021541667.1\|83435_84071_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_021541668.1\|84430_85237_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
WP_001159871.1\|85237_85543_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813639.1\|85544_85763_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_021564233.1\|86359_86617_+	hypothetical protein	NA	NA	NA	NA
WP_021564232.1\|86616_87207_+	hypothetical protein	NA	NA	NA	NA
WP_021572468.1\|87589_88768_-	hypothetical protein	NA	NA	NA	NA
WP_021572469.1\|88815_89331_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_021572470.1\|89397_90084_-	molecular chaperone	NA	NA	NA	NA
WP_021572471.1\|90074_92582_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_021541675.1\|92610_92943_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_021572472.1\|93028_93733_-	molecular chaperone	NA	NA	NA	NA
WP_021572473.1\|93808_94414_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_021541677.1\|94889_95465_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	2.3e-52	51.3
95509:95523	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP019455

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019455_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019455_1

224554-224667

Orphan

Consensus_repeat	Method
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019455_1

>merge|NZ_CP019455|1|224554-224667|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCACTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGGTTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

>NZ_CP019455|1|1|224554-224667|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGG
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019455.1\|WP_000948723.1\|228323_229682_-\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP019455.1\|WP_001539144.1\|205495_207145_-\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP019455.1\|WP_001225879.1\|204714_205491_-\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP019455.1\|WP_000012322.1\|212303_213992_-\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_CP019455.1\|WP_024224024.1\|229954_231583_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP019455.1\|WP_000301031.1\|226129_226780_-\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP019455.1\|WP_104933978.1\|211683_212307_-\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP019455.1\|WP_000135040.1\|225821_226076_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP019455.1\|WP_000990769.1\|216914_217637_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP019455.1\|WP_104933979.1\|227242_228319_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP019455.1\|WP_001209943.1\|231572_232832_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP019455.1\|WP_000332036.1\|224691_225822_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP019455.1\|WP_024224023.1\|232828_234019_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_CP019455.1\|WP_024224026.1\|217776_221535_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP019455.1\|WP_024224021.1\|235166_235970_-\|2-keto-3-deoxy-L-rhamnonate-aldolase	unknown	unknown	gnl\|CDD\|182257
NZ_CP019455.1\|WP_024235452.1\|203456_204641_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP019455.1\|WP_001075170.1\|222216_224502_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP019455.1\|WP_001281253.1\|214140_216768_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP019455.1\|WP_122995084.1\|207145_211540_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP019455.1\|WP_024224022.1\|234211_235126_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167

Protein	Function_ID	Function_description	E-value
NZ_CP019455.1\|WP_000948723.1\|228323_229682_-\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP019455.1\|WP_001539144.1\|205495_207145_-\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.83293e-126
NZ_CP019455.1\|WP_001225879.1\|204714_205491_-\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.05627e-152
NZ_CP019455.1\|WP_000012322.1\|212303_213992_-\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP019455.1\|WP_024224024.1\|229954_231583_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP019455.1\|WP_000301031.1\|226129_226780_-\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	3.42273e-158
NZ_CP019455.1\|WP_104933978.1\|211683_212307_-\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	1.84224e-138
NZ_CP019455.1\|WP_000135040.1\|225821_226076_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
NZ_CP019455.1\|WP_000990769.1\|216914_217637_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	2.18908e-171
NZ_CP019455.1\|WP_104933979.1\|227242_228319_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP019455.1\|WP_001209943.1\|231572_232832_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP019455.1\|WP_000332036.1\|224691_225822_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP019455.1\|WP_024224023.1\|232828_234019_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_CP019455.1\|WP_024224026.1\|217776_221535_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP019455.1\|WP_024224021.1\|235166_235970_-\|2-keto-3-deoxy-L-rhamnonate-aldolase	gnl\|CDD\|182257	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional.	0
NZ_CP019455.1\|WP_024235452.1\|203456_204641_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP019455.1\|WP_001075170.1\|222216_224502_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP019455.1\|WP_001281253.1\|214140_216768_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP019455.1\|WP_122995084.1\|207145_211540_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP019455.1\|WP_024224022.1\|234211_235126_+\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0

>NZ_CP019455.1|WP_001075170.1|222216_224502_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP019455.1|WP_024224026.1|217776_221535_-|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIISLRKEYLSLLPSMIASLFSANGAAAVIDSCQGYDIKASCQASRQSLSGNIQDWSIADGQWLIFSGMVNNASGGAVFLQHSAEFTISPQNETGMTLFADNSVSGEYNNGGAIFAKENSTINLANVIFDSNVAGGYGGAIYSAGTNDTGAADLRVTNAVFHNNIANDGKGGAIYTINNDVYLSDDAFNNNQAYTSTSYSDGDGGAIDVTDNSTDNTHLSGKTIINNTSFTNNYAEGYGGAIYTSSTTSPYLIDISVDDNYDQNNGVMIDENNSASGYDHSATAAAGGFMYIGHSVAEFNIAADKTLVIGNTSNDGAIDSLAGTGVIVKEGAGELVLNADNNAFTGEMSIQNGEVTLGRSDELMNVGDTHCQSDPQDCFGLMVGSTVHSEYQAELNVGNTQQTFVHSLTGFANGILNIDAGGNVTVNQGGFSGSIQGEGQLTVAQDGSYLLTGAQSMALTGDIVVEDNAVLSLAGNQADLRAMQSDPQSIVLNGGVLDLSDFTTWDGDSSYNDGLQISGSGGTVIGSNDVVDISSGDDLHIGGSDASQNGVYVVINAGDQRVTLANNNGYLGNTQIASGTLEVSDNSQLGDTSYNRSVIFTDPQQHSEMDVTTDVDTRSATTGQGRNIEMRADGEIHVEDGVDTQWGGLMADSTGQQLDSVSTLTKSGGGTLELTASGTATSAVRVEDGTLKGEAENIIPYVSSLWVGEDGVFETGQNQDIRSIDATSGGDIDITDGTVLRLTQQDTNQALDASLFSGDGTLVNATDGVTLAGELNTNLETDSLTYLSDVTVNGNLTNTSGAISLQNSVAGDTLTVNGDYTGGGTLFLDSELNGDDSASDQLVLNGNTSGNTTVVVNPITGIGEPTSTGIKVVDFAADPAQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVNPTPPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAVGQLAQHEDTSTVQLSGNLFSGHWGDDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYVWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGHGVVIEPQTQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVGVTPTLDLNYYHDPHATEIEEDGSTISDDAVKQRGEIKVGITGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP019455.1|WP_000990769.1|216914_217637_+|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHMTGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_CP019455.1|WP_001281253.1|214140_216768_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP019455.1|WP_000012322.1|212303_213992_-|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYSGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNVLMFATYQDKILAFSSSDMLFKDDQQDTEATAIASDLLSGKKRWETRFGLEARTAEKTPVRQRIVVSARLLGFGYQRLMPSFAGVRFEMGNDGWHSFLALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_CP019455.1|WP_104933978.1|211683_212307_-|DUF1175-domain-containing-protein
MRHGLLVLICWLYCVVVHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP019455.1|WP_122995084.1|207145_211540_-|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNSQFSPLKKYPLVEQFRYPLWQATSVEPQQGVKLEGASSNFISPQPGNIYIPLGKQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDGSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKMMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKDARVQLSLRAQQLSMVGNDLRYAGRFPVSMEGSEKVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELQSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTSHSGTVDIVVDKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKSLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGENALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTKDFSEADTSDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAGKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>NZ_CP019455.1|WP_001539144.1|205495_207145_-|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQMSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADMWGQYWQQRQAPAWLASLPTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQQIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKVTEEKSTTAVKPGVLNGRYRVTFANGNHMTFVSHGETTLLTVKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTYLQQNADRDGDCLSIPDSSATQRVSASPATVGARTMTAWTQDLIYAGDPVHYHGSRVTEGTLSWRHATAQAGQGERYDQILAFAYPDNNLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_CP019455.1|WP_001225879.1|204714_205491_-|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQTINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGAGAIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_CP019455.1|WP_024235452.1|203456_204641_+|acetyl-CoA-C-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSLHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNIVTRKKTFVFSQDEFPKADSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESSALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFEPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN
>NZ_CP019455.1|WP_000332036.1|224691_225822_+|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>NZ_CP019455.1|WP_000135040.1|225821_226076_+|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NZ_CP019455.1|WP_000301031.1|226129_226780_-|lipopolysaccharide-kinase-InaA
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP019455.1|WP_104933979.1|227242_228319_-|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYVIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP019455.1|WP_000948723.1|228323_229682_-|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>NZ_CP019455.1|WP_024224024.1|229954_231583_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGIRAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVHVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADTPLPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP019455.1|WP_001209943.1|231572_232832_+|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSAPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWHWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP019455.1|WP_024224023.1|232828_234019_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKISDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDSALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_CP019455.1|WP_024224022.1|234211_235126_+|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFSPDTARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKLEGLHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH
>NZ_CP019455.1|WP_024224021.1|235166_235970_-|2-keto-3-deoxy-L-rhamnonate-aldolase
MNALLSNSFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVASYTSHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILGVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRVKGSY

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Crispr_ID: NZ_CP019455_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019455_2

2922957-2923099

Orphan

Consensus_repeat	Method
TGCCAGATGCGACGCTACGCGTCTTATCATGCCGACAAAACCGC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP019455_2

>merge|NZ_CP019455|2|2922957-2923099|CRISPRCasFinder
TGCCAGATGCGACGCTACGCGTCTTATCATGCCGACAAAACCGCGCTCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGGTTGTGCACCGGTGCCAGATGCGCCGCTACGCGTCTTATCATGCCGACAAAACCGC

>NZ_CP019455|2|2|2922957-2923099|CRISPRCasFinder
TGCCAGATGCGACGCTACGCGTCTTATCATGCCGACAAAACCGC	GCTCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGGTTGTGCACCGG
TGCCAGATGCGCCGCTACGCGTCTTATCATGCCGACAAAACCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019455.1\|WP_024223489.1\|2925055_2925826_+\|putative-lateral-flagellar-export/assembly-protein-LafU	unknown	unknown	gnl\|CDD\|235860
NZ_CP019455.1\|WP_021515933.1\|2913154_2913622_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP019455.1\|WP_104934106.1\|2923362_2925096_-\|flagellar-type-III-secretion-system-protein-FlhA	unknown	unknown	gnl\|CDD\|224217
NZ_CP019455.1\|WP_024223486.1\|2916165_2918610_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
NZ_CP019455.1\|WP_024223491.1\|2929397_2930855_-\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP019455.1\|WP_000006241.1\|2922347_2922845_+\|REP-associated-tyrosine-transposase-RayT	unknown	unknown	gnl\|CDD\|224854
NZ_CP019455.1\|WP_001225679.1\|2920370_2921111_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP019455.1\|WP_001298181.1\|2913686_2914418_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP019455.1\|WP_001291991.1\|2931115_2931574_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP019455.1\|WP_024223485.1\|2914725_2915496_-\|2-oxoglutaramate-amidase	unknown	unknown	gnl\|CDD\|182461
NZ_CP019455.1\|WP_104934107.1\|2927578_2928730_+\|RNA-ligase-RtcB-family-protein	unknown	unknown	gnl\|CDD\|181972
NZ_CP019455.1\|WP_000284050.1\|2918849_2919428_+\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP019455.1\|WP_000189573.1\|2931665_2932910_+\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP019455.1\|WP_024223487.1\|2919632_2920400_+\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP019455.1\|WP_016233876.1\|2928726_2929341_+\|peptide-chain-release-factor-H	unknown	unknown	gnl\|CDD\|181271
NZ_CP019455.1\|WP_000532690.1\|2915649_2916123_+\|C-lysozyme-inhibitor	unknown	unknown	gnl\|CDD\|182187
NZ_CP019455.1\|WP_001226168.1\|2925896_2926952_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP019455.1\|WP_000093934.1\|2921422_2922172_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP019455.1\|WP_001059897.1\|2926948_2927401_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP019455.1\|WP_157798464.1\|2923125_2923284_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019455.1\|WP_024223489.1\|2925055_2925826_+\|putative-lateral-flagellar-export/assembly-protein-LafU	gnl\|CDD\|235860	PRK06778, PRK06778, hypothetical protein; Validated.	3.03122e-169
NZ_CP019455.1\|WP_021515933.1\|2913154_2913622_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	1.22695e-111
NZ_CP019455.1\|WP_104934106.1\|2923362_2925096_-\|flagellar-type-III-secretion-system-protein-FlhA	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP019455.1\|WP_024223486.1\|2916165_2918610_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_CP019455.1\|WP_024223491.1\|2929397_2930855_-\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP019455.1\|WP_000006241.1\|2922347_2922845_+\|REP-associated-tyrosine-transposase-RayT	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.70372e-42
NZ_CP019455.1\|WP_001225679.1\|2920370_2921111_-\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.07529e-116
NZ_CP019455.1\|WP_001298181.1\|2913686_2914418_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	8.39147e-178
NZ_CP019455.1\|WP_001291991.1\|2931115_2931574_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	4.03834e-113
NZ_CP019455.1\|WP_024223485.1\|2914725_2915496_-\|2-oxoglutaramate-amidase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
NZ_CP019455.1\|WP_104934107.1\|2927578_2928730_+\|RNA-ligase-RtcB-family-protein	gnl\|CDD\|181972	PRK09588, PRK09588, hypothetical protein; Reviewed.	0
NZ_CP019455.1\|WP_000284050.1\|2918849_2919428_+\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	1.61173e-142
NZ_CP019455.1\|WP_000189573.1\|2931665_2932910_+\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP019455.1\|WP_024223487.1\|2919632_2920400_+\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	6.12071e-145
NZ_CP019455.1\|WP_016233876.1\|2928726_2929341_+\|peptide-chain-release-factor-H	gnl\|CDD\|181271	PRK08179, prfH, peptide chain release factor-like protein; Reviewed.	3.83349e-131
NZ_CP019455.1\|WP_000532690.1\|2915649_2916123_+\|C-lysozyme-inhibitor	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	3.03569e-92
NZ_CP019455.1\|WP_001226168.1\|2925896_2926952_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP019455.1\|WP_000093934.1\|2921422_2922172_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	2.40724e-41
NZ_CP019455.1\|WP_001059897.1\|2926948_2927401_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	5.73549e-106

>NZ_CP019455.1|WP_000006241.1|2922347_2922845_+|REP-associated-tyrosine-transposase-RayT
MSEYRRYYIKGGTWFFTVNLQNRRNQLLTTQFQTLRNVIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVAKGLYPIDWAGDVTDFSAGERIIL
>NZ_CP019455.1|WP_000093934.1|2921422_2922172_+|C40-family-peptidase
MSSFLHGRFLHPGVFSLCVLLPLLASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAKSRRALRQHNREQIKQHPEWFPAPLKASDRRWQALVENNHFLSSDHLHNITEVAIHRLEQQLGKPYIWGGTRPDKGFDCSGLVFYAYNKILEAKLPRTANEMYHYRRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGETIRVSRLAEPFWQDHFLGARRILTEETIL
>NZ_CP019455.1|WP_001225679.1|2920370_2921111_-|murein-L,D-transpeptidase
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>NZ_CP019455.1|WP_024223487.1|2919632_2920400_+|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVLAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>NZ_CP019455.1|WP_000284050.1|2918849_2919428_+|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>NZ_CP019455.1|WP_024223486.1|2916165_2918610_-|acyl-CoA-dehydrogenase
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGAAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPIGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLRSINVDDFDPEELATKPVKLPEKVRKVEAA
>NZ_CP019455.1|WP_000532690.1|2915649_2916123_+|C-lysozyme-inhibitor
MGRISPGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>NZ_CP019455.1|WP_024223485.1|2914725_2915496_-|2-oxoglutaramate-amidase
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNVRVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAIYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMMALREYREKFPAWRDADEFTFR
>NZ_CP019455.1|WP_001298181.1|2913686_2914418_+|DNA-polymerase-III-subunit-epsilon
MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNATFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCLWRA
>NZ_CP019455.1|WP_021515933.1|2913154_2913622_-|ribonuclease-HI
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGYEKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV
>NZ_CP019455.1|WP_157798464.1|2923125_2923284_-|hypothetical-protein
MIRRVASHLASAHNRRMRRERLIRPTGERGFVGMIRRICVASGTGAQPPDAA
>NZ_CP019455.1|WP_104934106.1|2923362_2925096_-|flagellar-type-III-secretion-system-protein-FlhA
MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHFPFLMFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTMTETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQAGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>NZ_CP019455.1|WP_024223489.1|2925055_2925826_+|putative-lateral-flagellar-export/assembly-protein-LafU
MIVNSVSKSERESIIAALHGQSIFNGGGLSPLNKISPSHLPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRAR
>NZ_CP019455.1|WP_001226168.1|2925896_2926952_+|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKSDLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
>NZ_CP019455.1|WP_001059897.1|2926948_2927401_+|GNAT-family-N-acetyltransferase
MNNIQIRNYQPGDFQQLCAIFLRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITRIGHYIDMLFVEPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQTVKQQRVECRGTWFTNFYMRYKPQH
>NZ_CP019455.1|WP_104934107.1|2927578_2928730_+|RNA-ligase-RtcB-family-protein
MEWYMGKYIRSLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWRNSLGSIGGGNHFAELQQIDQIIDAELFALAGLDAQHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALRYIAEHDDALAFARINRQLIALRIMQQVKATGSPVLDVAHNFVSACQIGDQQGWLHRKGATPDDNGLVIIPGSRGDYSWLVKPVANEKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIFEEAPQAYKSAESVVQCLVLAGLIIPVARLRPVLTLKNSGGKKG
>NZ_CP019455.1|WP_016233876.1|2928726_2929341_+|peptide-chain-release-factor-H
MILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALISLDGDNAWALSESWCGTIQWICQSPYRPHHGRKNWFLGIGRFTADEQEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALKSQRRMFHHQIERGNPRRTFTGMAFIEG
>NZ_CP019455.1|WP_024223491.1|2929397_2930855_-|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVDTYQEILKNELVEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK
>NZ_CP019455.1|WP_001291991.1|2931115_2931574_+|xanthine-phosphoribosyltransferase
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQNTWIEQPWDMGVVFVPPISGR
>NZ_CP019455.1|WP_000189573.1|2931665_2932910_+|esterase-FrsA
MTQANLSETLFKPRFKHPETSTLVRRFSHGAQLPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKVVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITDWIEKRLC

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Crispr_ID: NZ_CP019455_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019455_3

3574847-3574929

Orphan

I-F

Consensus_repeat	Method
AGTTCACTGCCGTACAGGCAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019455_3

>merge|NZ_CP019455|3|3574847-3574929|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGTTCACTGCCGTACAGGCAGAT

>NZ_CP019455|3|3|3574847-3574929|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCT	TAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACA
AGTTCACTGCCGTACAGGCAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019455.1\|WP_001241673.1\|3575821_3576526_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP019455.1\|WP_001295343.1\|3586620_3587232_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP019455.1\|WP_024223911.1\|3578289_3580056_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP019455.1\|WP_024234788.1\|3580178_3581144_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP019455.1\|WP_000746478.1\|3568329_3569445_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP019455.1\|WP_001298299.1\|3564446_3565142_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP019455.1\|WP_000491136.1\|3563225_3564125_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP019455.1\|WP_001764385.1\|3576567_3578289_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP019455.1\|WP_000520781.1\|3572007_3572328_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP019455.1\|WP_104934138.1\|3582316_3586462_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP019455.1\|WP_131728210.1\|3567222_3568179_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP019455.1\|WP_000934041.1\|3572358_3574635_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP019455.1\|WP_000599804.1\|3565567_3567226_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP019455.1\|WP_104934137.1\|3561429_3563082_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP019455.1\|WP_000228473.1\|3581687_3582182_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP019455.1\|WP_000410785.1\|3571460_3571685_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP019455.1\|WP_000188124.1\|3569441_3571388_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP019455.1\|WP_000886683.1\|3588676_3589969_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP019455.1\|WP_001040187.1\|3575318_3575537_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP019455.1\|WP_000067755.1\|3587242_3588586_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355

Protein	Function_ID	Function_description	E-value
NZ_CP019455.1\|WP_001241673.1\|3575821_3576526_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.60016e-139
NZ_CP019455.1\|WP_001295343.1\|3586620_3587232_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP019455.1\|WP_024223911.1\|3578289_3580056_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP019455.1\|WP_024234788.1\|3580178_3581144_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP019455.1\|WP_000746478.1\|3568329_3569445_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP019455.1\|WP_001298299.1\|3564446_3565142_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
NZ_CP019455.1\|WP_000491136.1\|3563225_3564125_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	4.57772e-118
NZ_CP019455.1\|WP_001764385.1\|3576567_3578289_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP019455.1\|WP_000520781.1\|3572007_3572328_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP019455.1\|WP_104934138.1\|3582316_3586462_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP019455.1\|WP_131728210.1\|3567222_3568179_-\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.44733e-131
NZ_CP019455.1\|WP_000934041.1\|3572358_3574635_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP019455.1\|WP_000599804.1\|3565567_3567226_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP019455.1\|WP_104934137.1\|3561429_3563082_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP019455.1\|WP_000228473.1\|3581687_3582182_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP019455.1\|WP_000410785.1\|3571460_3571685_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP019455.1\|WP_000188124.1\|3569441_3571388_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP019455.1\|WP_000886683.1\|3588676_3589969_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP019455.1\|WP_001040187.1\|3575318_3575537_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP019455.1\|WP_000067755.1\|3587242_3588586_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0

>NZ_CP019455.1|WP_000934041.1|3572358_3574635_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP019455.1|WP_000520781.1|3572007_3572328_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP019455.1|WP_000410785.1|3571460_3571685_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP019455.1|WP_000188124.1|3569441_3571388_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGKDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAVEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP019455.1|WP_000746478.1|3568329_3569445_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP019455.1|WP_131728210.1|3567222_3568179_-|DUF535-domain-containing-protein
MNMSQLTERTFTSSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP019455.1|WP_000599804.1|3565567_3567226_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKVISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP019455.1|WP_001298299.1|3564446_3565142_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>NZ_CP019455.1|WP_000491136.1|3563225_3564125_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP019455.1|WP_104934137.1|3561429_3563082_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAELQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLMSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP019455.1|WP_001040187.1|3575318_3575537_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP019455.1|WP_001241673.1|3575821_3576526_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NZ_CP019455.1|WP_001764385.1|3576567_3578289_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALEEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP019455.1|WP_024223911.1|3578289_3580056_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTEPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP019455.1|WP_024234788.1|3580178_3581144_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHINRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP019455.1|WP_000228473.1|3581687_3582182_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP019455.1|WP_104934138.1|3582316_3586462_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEEEITYTARGVVADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPTQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAPEQSAQQPYYAPAPEQSAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANGGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDEDAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQSQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVTQQPQYQQPQQPVTQQPQYQQPQQPVAPQPHDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGVGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP019455.1|WP_001295343.1|3586620_3587232_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP019455.1|WP_000067755.1|3587242_3588586_+|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP019455.1|WP_000886683.1|3588676_3589969_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019455_2	2.1\|2923001\|55\|NZ_CP019455\|CRISPRCasFinder	2923001-2923055	55	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27276-27330	1	0.982
NZ_CP019455_2	2.1\|2923001\|55\|NZ_CP019455\|CRISPRCasFinder	2923001-2923055	55	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27375-27429	3	0.945
NZ_CP019455_2	2.1\|2923001\|55\|NZ_CP019455\|CRISPRCasFinder	2923001-2923055	55	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229279-229333	8	0.855
NZ_CP019455_2	2.1\|2923001\|55\|NZ_CP019455\|CRISPRCasFinder	2923001-2923055	55	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239773-239827	8	0.855
NZ_CP019455_2	2.1\|2923001\|55\|NZ_CP019455\|CRISPRCasFinder	2923001-2923055	55	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230685-230739	8	0.855
NZ_CP019455_2	2.1\|2923001\|55\|NZ_CP019455\|CRISPRCasFinder	2923001-2923055	55	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211655-211709	8	0.855
NZ_CP019455_2	2.1\|2923001\|55\|NZ_CP019455\|CRISPRCasFinder	2923001-2923055	55	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27474-27528	9	0.836
NZ_CP019455_2	2.1\|2923001\|55\|NZ_CP019455\|CRISPRCasFinder	2923001-2923055	55	NC_049343	Escherichia phage 500465-2, complete genome	31791-31845	13	0.764
NZ_CP019455_2	2.1\|2923001\|55\|NZ_CP019455\|CRISPRCasFinder	2923001-2923055	55	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	19389-19443	16	0.709

1. spacer 2.1|2923001|55|NZ_CP019455|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 1, identity: 0.982

gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcaccgg	CRISPR spacer
gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgtaccgg	Protospacer
*************************************************.*****

2. spacer 2.1|2923001|55|NZ_CP019455|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 3, identity: 0.945

gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcaccgg	CRISPR spacer
actcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcgccga	Protospacer
.*************************************************.***.

3. spacer 2.1|2923001|55|NZ_CP019455|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.855

gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcaccgg	CRISPR spacer
cgccacccgtaggccggataaggcgttcacgccgcatccggcagtcgtgcgcaga	Protospacer
  .***************************************.**.****.* *.

4. spacer 2.1|2923001|55|NZ_CP019455|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.855

gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcaccgg	CRISPR spacer
cgccacccgtaggccggataaggcgttcacgccgcatccggcagtcgtgcgcaga	Protospacer
  .***************************************.**.****.* *.

5. spacer 2.1|2923001|55|NZ_CP019455|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.855

gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcaccgg	CRISPR spacer
cgccacccgtaggccggataaggcgttcacgccgcatccggcagtcgtgcgcaga	Protospacer
  .***************************************.**.****.* *.

6. spacer 2.1|2923001|55|NZ_CP019455|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.855

gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcaccgg	CRISPR spacer
cgccacccgtaggccggataaggcgttcacgccgcatccggcagtcgtgcgcaga	Protospacer
  .***************************************.**.****.* *.

7. spacer 2.1|2923001|55|NZ_CP019455|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 9, identity: 0.836

gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcaccgg	CRISPR spacer
acgattttgtaggccggataaggcgttcacgccgcatctggcggttgtgcgccgg	Protospacer
.*   ...******************************.***********.****

8. spacer 2.1|2923001|55|NZ_CP019455|CRISPRCasFinder matches to NC_049343 (Escherichia phage 500465-2, complete genome) position: , mismatch: 13, identity: 0.764

gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcaccgg----	CRISPR spacer
cgtcacacgtaggtcggataaggcgttcacgccgcatccggcaa----acactgcgaga	Protospacer
  **** ******.****************************..    .***.*

9. spacer 2.1|2923001|55|NZ_CP019455|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 16, identity: 0.709

gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtgcaccgg	CRISPR spacer
ggccatccgtaggccggataaggcgttcacaccgcatccggcataaacatgtaag	Protospacer
* .**.************************.***********.   ...... .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

90258 : 99703

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001351788.1\|90258_91395_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	8.5e-163	97.7
WP_104933966.1\|91391_93395_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_104933967.1\|93519_93981_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	4.6e-75	98.0
WP_001295430.1\|94021_94492_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|94538_95258_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|95254_96940_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|97161_97893_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001216963.1\|97952_98060_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|98040_98772_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569357.1\|98776_99703_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8

DBSCAN-SWA_2

308068 : 418719

137

Enterobacteria_phage(64.71%)

holin,terminase,capsid,portal,lysis,coat,tail,plate,integrase,head,tRNA

attL 305273:305289|attR 394268:394284

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
305273:305289	attL	NA	NA	NA	NA
WP_001283598.1\|308068_308881_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_001289180.1\|308880_309894_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_024245911.1\|309959_311117_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	7.9e-23	29.6
WP_000023402.1\|311276_312281_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	4.5e-99	55.7
WP_001390705.1\|312377_312698_-	helix-turn-helix transcriptional regulator	Q1JS37	Enterobacteria_phage	1.4e-14	43.2
WP_000004249.1\|312811_313099_+	hypothetical protein	A0A0M4RCW1	Salmonella_phage	4.3e-23	52.6
WP_000200501.1\|313105_313312_+	hypothetical protein	NA	NA	NA	NA
WP_000813363.1\|313564_313906_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	2.3e-55	92.2
WP_000158971.1\|313916_314204_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	7.8e-33	76.8
WP_000514277.1\|314215_314458_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021652.1\|314454_314568_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	3.3e-11	97.3
WP_000985161.1\|314654_314858_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.9e-26	86.6
WP_000153674.1\|314854_315100_+	winged helix-turn-helix domain-containing protein	A0A0A7NV47	Enterobacteria_phage	3.3e-40	98.8
WP_001274219.1\|315096_315396_+	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	8.2e-41	89.8
WP_001326016.1\|315407_316025_+	hypothetical protein	S5MQL6	Escherichia_phage	5.3e-10	46.7
WP_000599390.1\|316021_316387_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	6.6e-61	96.7
WP_065304192.1\|316393_319216_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	97.2
WP_001459827.1\|319292_320252_+	plasmid segregation protein parM	A0A0A7NPX4	Enterobacteria_phage	6.4e-180	99.1
WP_000211250.1\|320256_320568_+	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	8.5e-49	95.1
WP_001459828.1\|320631_321066_+	ead/Ea22-like family protein	NA	NA	NA	NA
WP_000087812.1\|321646_322693_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
WP_000613759.1\|322692_324444_-\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	98.5
WP_001262673.1\|324598_325435_+\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	100.0
WP_001055118.1\|325457_326510_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	6.8e-199	100.0
WP_065304194.1\|326555_327356_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	9.9e-126	89.1
WP_000063103.1\|327457_327952_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.2e-89	99.4
WP_000864901.1\|327951_328152_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000104350.1\|328154_328478_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000072327.1\|328474_328867_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_000780489.1\|328863_329271_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	2.5e-64	97.0
WP_000920594.1\|329408_329876_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.6e-86	100.0
WP_065304195.1\|329868_330504_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.2e-113	99.1
WP_065304196.1\|330500_331082_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.9e-102	98.4
WP_000213447.1\|331078_331429_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_001111935.1\|331432_332329_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	5.7e-154	97.7
WP_000071706.1\|332321_332852_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	1.6e-92	98.2
WP_000108494.1\|332854_335014_+\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	6.0e-109	96.2
WP_000631344.1\|335010_335913_+\|tail	tail protein	A0A0M4QWS3	Salmonella_phage	6.8e-99	63.9
WP_001414827.1\|335921_336500_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.0e-96	89.0
WP_000954203.1\|336543_337116_-	serine acetyltransferase	A0A1L2JYI5	Streptococcus_phage	1.0e-07	34.4
WP_000979946.1\|337272_337761_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	8.8e-85	99.4
WP_065304198.1\|337773_340581_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	91.2
WP_001391627.1\|340567_340696_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	1.5e-15	95.2
WP_000665307.1\|340731_341097_-	hypothetical protein	A0A0A7NPZ0	Enterobacteria_phage	1.4e-55	96.7
WP_104933985.1\|341151_341664_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	9.2e-93	99.4
WP_065304199.1\|341663_342848_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.3e-224	98.7
WP_065304200.1\|343005_344115_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	5.3e-194	94.0
WP_001383550.1\|344157_344418_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078916.1\|344608_344749_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_032192010.1\|345164_345992_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_001173924.1\|346502_346835_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_071961389.1\|346839_347733_+	type VI secretion protein	NA	NA	NA	NA
WP_000615815.1\|347990_348986_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_000127769.1\|348982_350161_-	MFS transporter	NA	NA	NA	NA
WP_000817178.1\|350425_351646_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_024224008.1\|351804_353811_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_021513739.1\|353931_354210_-	YfcL family protein	NA	NA	NA	NA
WP_001089235.1\|354243_354792_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_000447366.1\|354791_355601_-	TSUP family transporter	NA	NA	NA	NA
WP_001043802.1\|355600_356425_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_024224007.1\|356428_357514_-	chorismate synthase	A0A291AU41	Pandoravirus	9.1e-90	47.8
WP_104933986.1\|357548_358481_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_000730806.1\|358646_359198_+	endonuclease SmrB	NA	NA	NA	NA
WP_024224006.1\|359521_360379_-	DUF2544 domain-containing protein	NA	NA	NA	NA
WP_024224005.1\|360380_360908_-	fimbrial protein	NA	NA	NA	NA
WP_024224004.1\|360904_361384_-	fimbrial protein	NA	NA	NA	NA
WP_000642895.1\|361380_361884_-	fimbrial protein	NA	NA	NA	NA
WP_024224003.1\|361900_362653_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_021535395.1\|362672_365321_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000032637.1\|365401_365968_-	fimbrial protein	NA	NA	NA	NA
WP_001195816.1\|366531_367017_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_024235426.1\|367219_369364_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_024224000.1\|369363_370674_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_001296261.1\|370854_371139_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_024235425.1\|371510_372851_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_000776774.1\|372912_373668_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_024223998.1\|373961_374894_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	3.6e-167	99.4
WP_104933987.1\|375205_376363_+\|integrase	prophage integrase IntS	A5VW56	Enterobacteria_phage	3.1e-221	99.0
WP_033552555.1\|376516_376879_+	GtrA family protein	U5P0S6	Shigella_phage	2.7e-54	90.0
WP_089551998.1\|376875_377787_+	glycosyltransferase family 2 protein	M1FQW5	Enterobacteria_phage	1.9e-157	89.1
WP_158666796.1\|377794_379249_+	hypothetical protein	I1TED7	Salmonella_phage	2.8e-17	31.7
WP_089621888.1\|381431_381698_+	Arc family DNA-binding protein	A0A088CPT2	Enterobacteria_phage	2.1e-32	89.3
WP_000749291.1\|381768_382254_+	hypothetical protein	NA	NA	NA	NA
WP_104933989.1\|382256_384371_-	DNA transfer protein	B9UDL1	Salmonella_phage	0.0e+00	95.8
WP_104933990.1\|384370_385636_-	acyltransferase	A0A2D1GLX5	Escherichia_phage	1.7e-111	57.6
WP_000964882.1\|385645_386338_-	DNA transfer protein	G5DA80	Enterobacteria_phage	9.2e-112	100.0
WP_000614031.1\|386340_386796_-	DUF2824 family protein	A5VW67	Enterobacteria_phage	1.5e-86	98.7
WP_057696320.1\|386795_387644_-	hypothetical protein	Q716G6	Shigella_phage	1.5e-103	99.3
WP_104933991.1\|387643_389062_-	hypothetical protein	Q9AYZ4	Salmonella_phage	3.1e-271	98.1
WP_062867361.1\|389061_389562_-	recombinase RmuC	G8EYJ2	Enterobacteria_phage	2.5e-90	98.8
WP_104933992.1\|389539_389782_-	hypothetical protein	A0A2D1GLK1	Escherichia_phage	1.0e-25	90.9
WP_021568314.1\|389826_391122_-\|coat	coat protein	A0A2D1GLV2	Escherichia_phage	1.0e-241	99.1
WP_044809916.1\|391121_392033_-	scaffolding protein	A0A2D1GLN7	Escherichia_phage	1.4e-160	99.3
WP_104933993.1\|392046_394212_-\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	0.0e+00	99.6
WP_000417851.1\|394212_395712_-\|terminase	terminase	A0A2D1GLW6	Escherichia_phage	4.8e-307	100.0
394268:394284	attR	NA	NA	NA	NA
WP_000729922.1\|395689_396178_-	DNA-packaging protein gp3	A0A0M3ULC0	Salmonella_phage	5.0e-88	100.0
WP_000807788.1\|396213_396456_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_001504034.1\|396756_397281_-	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	1.0e-86	93.6
WP_104933994.1\|397480_397948_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	1.0e-74	95.5
WP_000229391.1\|397944_398421_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	4.9e-88	100.0
WP_000783734.1\|398404_398728_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_104933995.1\|399189_399708_-	DUF1133 family protein	Q716B8	Shigella_phage	1.7e-94	98.8
WP_104933996.1\|399751_400363_-	recombination protein NinG	A0A2D1GLP2	Escherichia_phage	5.1e-98	98.5
WP_104933997.1\|400355_400565_-	protein ninF	G9L691	Escherichia_phage	7.0e-31	98.5
WP_104933998.1\|400524_400926_-	hypothetical protein	Q9EYC4	Enterobacteria_phage	3.9e-70	97.0
WP_001254255.1\|400928_401105_-	NinE family protein	A5VW90	Enterobacteria_phage	4.6e-28	100.0
WP_021543249.1\|401101_401629_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	1.2e-100	99.4
WP_000736898.1\|401625_402066_-	recombination protein NinB	Q8H9Z8	Enterobacteria_phage	4.1e-81	100.0
WP_104933999.1\|402139_403516_-	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	1.5e-251	98.9
WP_048230072.1\|403512_404343_-	replication protein	A0A1R3Y5R9	Salmonella_virus	6.0e-134	92.1
WP_023150367.1\|404523_404823_-	bacteriophage CII protein	A0A0P0ZBJ0	Stx2-converting_phage	2.4e-48	98.0
WP_000437872.1\|404929_405130_-	hypothetical protein	A4KWT7	Enterobacteria_phage	5.6e-30	98.5
WP_001274764.1\|405230_405944_+	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	7.2e-128	95.8
WP_000588959.1\|405951_406389_+	hypothetical protein	C6ZR46	Salmonella_phage	3.8e-55	73.1
WP_000050904.1\|406375_406747_+	hypothetical protein	C6ZR45	Salmonella_phage	3.6e-06	58.3
WP_048230120.1\|407193_407502_+	hypothetical protein	A0A075B8K6	Enterobacteria_phage	1.5e-29	66.7
WP_048230069.1\|407504_407867_+	hypothetical protein	K7PHE0	Enterobacteria_phage	2.2e-56	96.7
WP_049084739.1\|408050_408674_+	hypothetical protein	K7PKU5	Enterobacteria_phage	6.6e-109	98.1
WP_000972068.1\|408898_409033_+	hypothetical protein	K7PHK2	Enterobacteria_phage	7.6e-15	97.7
WP_048230066.1\|409017_409170_+	host cell division inhibitory peptide Kil	K7P837	Enterobacteria_phage	1.1e-20	98.0
WP_048230057.1\|409424_410132_+	recombinase	Q716E7	Shigella_phage	1.8e-134	97.4
WP_048230056.1\|410132_410639_+	single-stranded DNA-binding protein	K7PHK1	Enterobacteria_phage	5.2e-80	99.4
WP_001111285.1\|410652_410949_+	DUF2856 family protein	A0A220NRR0	Escherichia_phage	8.6e-51	99.0
WP_072280554.1\|410959_411250_+	hypothetical protein	K7P7M4	Enterobacteria_phage	1.4e-45	97.9
WP_042099949.1\|411246_411411_+	DUF2737 family protein	K7P7R0	Enterobacteria_phage	7.1e-23	98.1
WP_048230053.1\|411407_411845_+	hypothetical protein	K7PMI0	Enterobacteria_phage	3.3e-75	96.6
WP_048230052.1\|411841_412258_+	ead/Ea22-like family protein	A0A125RPT9	Escherichia_phage	1.5e-32	60.1
WP_104934000.1\|412259_412451_+	hypothetical protein	K7PKJ7	Enterobacteria_phage	1.6e-26	96.8
WP_104934001.1\|412453_413269_+	DUF551 domain-containing protein	Q8HAA7	Salmonella_phage	1.0e-61	57.7
WP_064236736.1\|413265_413526_+	hypothetical protein	A0A077SLR0	Escherichia_phage	9.3e-41	96.5
WP_104934002.1\|413525_413810_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	3.8e-48	95.7
WP_047667613.1\|413882_414050_+	hypothetical protein	A5VWB7	Enterobacteria_phage	8.3e-27	98.1
WP_001163428.1\|414107_414308_+	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
WP_001316510.1\|414605_414758_+	hypothetical protein	NA	NA	NA	NA
WP_104934004.1\|414837_416085_-	MFS transporter	NA	NA	NA	NA
WP_024223997.1\|416146_417070_-	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_024223996.1\|417285_418719_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	1.2e-28	24.4

DBSCAN-SWA_3

756146 : 763286

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000103863.1\|756146_758708_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
WP_001765077.1\|758813_759470_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	8.6e-51	46.6
WP_001296319.1\|759520_760288_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_000847997.1\|760483_761392_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
WP_024223275.1\|761388_762651_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-135	61.4
WP_001279002.1\|762647_763286_+	aldolase	A0A077SK32	Escherichia_phage	3.7e-83	75.0

DBSCAN-SWA_4

3401214 : 3450130

Enterobacteria_phage(46.67%)

holin,terminase,lysis,portal,capsid,protease,tail,integrase,head

attL 3391745:3391759|attR 3406181:3406195

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3391745:3391759	attL	NA	NA	NA	NA
WP_000533643.1\|3401214_3402285_-\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	3.9e-202	100.0
WP_001303849.1\|3402262_3402481_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000545728.1\|3402520_3402688_-	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	98.2
WP_000120063.1\|3402930_3403533_+	hypothetical protein	NA	NA	NA	NA
WP_000763363.1\|3403743_3403965_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
WP_001386642.1\|3404063_3404345_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
WP_000548536.1\|3404355_3404547_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.1e-25	96.8
WP_000682316.1\|3404519_3404702_-	DUF1317 domain-containing protein	A0A0P0ZAS9	Stx2-converting_phage	4.1e-27	95.0
WP_000186844.1\|3404698_3405379_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	3.5e-132	99.6
WP_000100847.1\|3405375_3406161_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995449.1\|3406166_3406463_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
3406181:3406195	attR	NA	NA	NA	NA
WP_000372923.1\|3406537_3406681_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	2.7e-18	97.9
WP_001198860.1\|3406649_3406814_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	A0A0N6WES3	Escherichia_phage	1.4e-26	100.0
WP_000065374.1\|3406886_3407255_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	2.0e-65	100.0
WP_032228038.1\|3407443_3408325_-	hypothetical protein	NA	NA	NA	NA
WP_000332935.1\|3408321_3408777_-	Antitermination protein N	J3JZZ6	Escherichia_phage	6.3e-61	92.2
WP_000618038.1\|3408995_3409400_-	hypothetical protein	Q716D7	Shigella_phage	7.3e-69	98.5
WP_000028394.1\|3409396_3410029_-	LexA family transcriptional regulator	K7P850	Enterobacteria_phage	4.6e-118	99.0
WP_001194218.1\|3410132_3410348_+	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	1.4e-31	100.0
WP_000251073.1\|3410467_3410761_+	hypothetical protein	K7P6Y2	Enterobacteria_phage	2.8e-46	100.0
WP_000185509.1\|3410793_3411693_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	2.5e-170	98.7
WP_000788866.1\|3411689_3412391_+	Replication protein P	A0A0P0ZD31	Stx2-converting_phage	1.4e-128	98.7
WP_000145931.1\|3412387_3412678_+	protein ren	A0A1I9LJP5	Stx_converting_phage	9.6e-47	100.0
WP_000736898.1\|3412751_3413192_+	recombination protein NinB	Q8H9Z8	Enterobacteria_phage	4.1e-81	100.0
WP_104934129.1\|3413188_3413716_+	phage N-6-adenine-methyltransferase	Q8H9Z7	Enterobacteria_phage	1.8e-99	98.9
WP_001254222.1\|3413712_3413895_+	NinE family protein	Q8H9Z6	Enterobacteria_phage	1.9e-29	100.0
WP_000566868.1\|3413891_3414062_+	protein ninF	Q8H9Z5	Enterobacteria_phage	1.2e-25	98.2
WP_001108038.1\|3414054_3414666_+	recombination protein NinG	Q716C3	Shigella_phage	6.0e-99	99.5
WP_001028841.1\|3414662_3415328_+	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	4.4e-127	96.4
WP_000750155.1\|3415539_3416499_-	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_032160865.1\|3416836_3416959_+	YlcG family protein	NA	NA	NA	NA
WP_001097238.1\|3416973_3417663_+	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.5e-58	48.1
WP_001302581.1\|3417847_3418591_+	hypothetical protein	NA	NA	NA	NA
WP_112867411.1\|3418676_3418835_+	DUF3927 family protein	NA	NA	NA	NA
WP_000023266.1\|3419133_3420984_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	96.3
WP_000411802.1\|3421431_3421638_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_000075135.1\|3421637_3422135_+	lysozyme	A0A0N7KZA0	Stx2-converting_phage	1.3e-91	99.4
WP_024223034.1\|3422131_3422569_+\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	8.5e-71	99.3
WP_000881338.1\|3422718_3423336_+	hypothetical protein	A0A1R3Y613	Salmonella_virus	1.2e-91	85.4
WP_001307652.1\|3423523_3423718_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000235451.1\|3424112_3424622_+\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.2e-12	33.3
WP_024223518.1\|3424593_3426522_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_000259002.1\|3426505_3426712_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_028125978.1\|3426708_3428301_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.2e-183	60.9
WP_001253941.1\|3428290_3429796_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-100	54.2
WP_000256821.1\|3429832_3430180_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.6e-22	57.0
WP_000522632.1\|3430237_3431266_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.9e-114	62.2
WP_000201513.1\|3431317_3431701_+	hypothetical protein	NA	NA	NA	NA
WP_001204560.1\|3431693_3432047_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-41	69.2
WP_000975031.1\|3432061_3432595_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.0e-57	65.6
WP_000683065.1\|3432591_3432987_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.7e-59	83.2
WP_001143022.1\|3432994_3433747_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	1.1e-126	93.6
WP_000479115.1\|3433760_3434192_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.8e-42	67.3
WP_000533411.1\|3434218_3434632_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	5.1e-41	80.2
WP_000847393.1\|3437189_3437519_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.7e-53	91.7
WP_001152529.1\|3437518_3438217_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.9e-129	96.6
WP_001300229.1\|3438221_3438965_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.7e-144	93.5
WP_000090913.1\|3438901_3439504_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	3.6e-88	84.7
WP_000515383.1\|3439564_3442960_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	88.9
WP_024234435.1\|3443027_3443627_+	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	1.3e-109	97.0
WP_104934196.1\|3443691_3445005_+\|tail	phage tail protein	Q9EYE8	Enterobacteria_phage	9.1e-76	98.6
WP_001023455.1\|3445006_3445276_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	2.4e-44	98.9
WP_000950792.1\|3445452_3446433_+	type III secretion system effector arginine glycosyltransferase NleB2	Q8HAB2	Salmonella_phage	1.7e-87	49.5
WP_095111390.1\|3446779_3446911_+	hypothetical protein	K7PMH7	Enterobacteria_phage	1.5e-07	76.5
WP_000950984.1\|3447074_3447956_+	hypothetical protein	A5LH48	Enterobacteria_phage	1.0e-147	90.4
WP_000652080.1\|3448179_3449028_+	type III secretion system effector Cif	A5LH49	Enterobacteria_phage	3.5e-153	98.5
WP_001131649.1\|3449554_3450130_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	1.8e-76	76.4

DBSCAN-SWA_5

3820360 : 3867934

Enterobacteria_phage(52.94%)

holin,terminase,capsid,portal,tail,integrase,head,tRNA

attL 3812996:3813011|attR 3873667:3873682

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3812996:3813011	attL	NA	NA	NA	NA
WP_001298466.1\|3820360_3821467_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|3821520_3821982_-	phosphatase NudJ	NA	NA	NA	NA
WP_104934147.1\|3821991_3822645_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444487.1\|3822816_3824067_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_044706132.1\|3824180_3825323_-\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	1.1e-205	99.4
WP_000088653.1\|3825312_3825549_-	excisionase	NA	NA	NA	NA
WP_000488406.1\|3825688_3825928_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	3.9e-38	94.9
WP_000763364.1\|3825975_3826194_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	1.8e-34	95.8
WP_077815074.1\|3826292_3826574_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.6e-46	96.8
WP_000548537.1\|3826584_3826776_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_000149539.1\|3826748_3826931_-	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	6.3e-28	96.7
WP_000186844.1\|3826927_3827608_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	3.5e-132	99.6
WP_000100847.1\|3827604_3828390_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995439.1\|3828395_3828692_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000233576.1\|3828767_3828974_-	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_021544413.1\|3829453_3829960_-	hypothetical protein	U5P455	Shigella_phage	3.4e-07	34.3
WP_000654525.1\|3829981_3831004_-	hypothetical protein	U5P4L0	Shigella_phage	1.2e-96	52.0
WP_001295669.1\|3831126_3831819_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.5e-109	86.1
WP_000184665.1\|3831929_3832157_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	3.8e-22	69.0
WP_001182881.1\|3832187_3832727_+	hypothetical protein	M9NZI6	Enterobacteria_phage	8.9e-62	66.7
WP_032145241.1\|3832813_3833743_+	replication protein	A0A0M5M7Y1	Salmonella_phage	5.6e-112	64.7
WP_021544415.1\|3833739_3834450_+	replication protein P	M1FJ72	Enterobacteria_phage	7.7e-122	94.7
WP_104934149.1\|3834573_3836220_+	phosphoesterase	NA	NA	NA	NA
WP_021544417.1\|3836216_3837053_+	HAD family hydrolase	NA	NA	NA	NA
WP_072126663.1\|3837546_3837648_+	hypothetical protein	NA	NA	NA	NA
WP_052937985.1\|3837644_3838100_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	9.8e-62	68.2
WP_000224914.1\|3838099_3838270_+	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_000774477.1\|3838262_3838553_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	6.0e-49	96.9
WP_024223830.1\|3838549_3838906_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	8.2e-56	92.3
WP_001568558.1\|3838902_3839043_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.3e-09	71.1
WP_024223831.1\|3839039_3839729_+	antitermination protein	I6PDF8	Cronobacter_phage	5.3e-59	49.8
WP_024223832.1\|3839950_3840754_-	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	4.3e-68	47.9
WP_000544528.1\|3840982_3841288_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_024223833.1\|3841274_3841751_+	glycoside hydrolase family protein	U5P0A9	Shigella_phage	4.7e-83	94.9
WP_024223834.1\|3841734_3842127_+	DUF2570 domain-containing protein	S5FKR3	Shigella_phage	1.7e-54	89.1
WP_126119126.1\|3842587_3843127_+	hypothetical protein	NA	NA	NA	NA
WP_024223836.1\|3843234_3843522_+	hypothetical protein	NA	NA	NA	NA
WP_000453558.1\|3844280_3844826_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
WP_054486371.1\|3844800_3846726_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
WP_053895199.1\|3846722_3846929_+\|tail	phage tail protein	A0A2R9YJL2	Escherichia_phage	1.7e-29	98.5
WP_054486372.1\|3846925_3848527_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	5.9e-311	99.6
WP_054486373.1\|3848507_3849839_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	6.5e-231	97.7
WP_053895198.1\|3849848_3850181_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.7e-50	90.0
WP_000118191.1\|3850236_3851262_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.4e-185	95.9
WP_024222986.1\|3851303_3851699_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	8.2e-57	92.4
WP_000752995.1\|3851710_3852064_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.9e-62	99.1
WP_054486374.1\|3852075_3852654_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.9e-79	88.5
WP_054486375.1\|3852650_3853046_+\|tail	phage tail protein	A0A0K2FIF4	Enterobacteria_phage	5.0e-70	98.5
WP_054486404.1\|3853053_3853794_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.4e-126	95.5
WP_000479153.1\|3853809_3854232_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.7e-73	100.0
WP_054486376.1\|3854213_3854648_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.0e-63	98.3
WP_054486377.1\|3854640_3857202_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	90.5
WP_104934150.1\|3857198_3857528_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.1e-53	93.6
WP_054486379.1\|3857527_3858226_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.1e-131	97.8
WP_054486380.1\|3858231_3858975_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.4e-150	98.8
WP_054486381.1\|3858911_3859514_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.6e-88	85.1
WP_054486382.1\|3859574_3863276_+	DUF1983 domain-containing protein	A5LH43	Enterobacteria_phage	0.0e+00	77.3
WP_021559802.1\|3863343_3863943_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	5.9e-107	95.0
WP_072178779.1\|3864002_3867356_+	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	4.0e-11	35.5
WP_054486386.1\|3867355_3867934_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.3e-100	93.2
3873667:3873682	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4221088 : 4270933

Enterobacteria_phage(47.73%)

terminase,lysis,portal,protease,tail,integrase

attL 4246792:4246807|attR 4271005:4271020

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001429608.1\|4221088_4221664_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.7e-101	94.2
WP_040082236.1\|4224687_4225287_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	1.7e-109	98.0
WP_104934163.1\|4225357_4228771_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.4
WP_000741590.1\|4228831_4229479_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.5e-111	96.7
WP_104934164.1\|4229376_4230120_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	7.0e-150	98.4
WP_001152337.1\|4230125_4230824_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.9e-133	98.7
WP_000447248.1\|4230833_4231163_-\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	1.7e-60	100.0
WP_024229771.1\|4231162_4234228_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	99.0
WP_001161009.1\|4234199_4234529_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001300035.1\|4234537_4234924_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
WP_021560209.1\|4234984_4235728_-\|tail	phage tail protein	A5LH35	Enterobacteria_phage	2.3e-132	99.2
WP_001079419.1\|4235738_4236140_-\|tail	tail protein	A5LH34	Enterobacteria_phage	1.9e-72	99.2
WP_000677106.1\|4236136_4236715_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	4.2e-102	100.0
WP_001283153.1\|4236726_4237002_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_001097050.1\|4236994_4237318_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_021560210.1\|4237404_4239432_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	0.0e+00	99.4
WP_000985929.1\|4239376_4240885_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	4.5e-289	99.6
WP_097725716.1\|4240884_4241097_-	hypothetical protein	A5LH28	Enterobacteria_phage	5.4e-31	98.6
WP_000507036.1\|4241093_4243193_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	96.6
WP_000421825.1\|4243201_4243741_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.8e-94	100.0
WP_001031431.1\|4244286_4244493_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
WP_001531698.1\|4244793_4245204_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	5.0e-65	91.2
WP_001019139.1\|4245355_4245529_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001309517.1\|4245701_4245857_-	hypothetical protein	NA	NA	NA	NA
WP_120795388.1\|4245936_4246002_-	Qin prophage; protein YnfR	NA	NA	NA	NA
WP_071524604.1\|4246004_4246193_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|4246203_4246416_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071769.1\|4246778_4247276_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
4246792:4246807	attL	NA	NA	NA	NA
WP_001092973.1\|4247272_4247806_-	lysozyme	K7PLY1	Enterobacteria_phage	8.4e-97	92.7
WP_040082246.1\|4247802_4248114_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	4.5e-26	79.7
WP_000839590.1\|4248118_4248334_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000066485.1\|4249087_4249303_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	7.7e-25	76.5
WP_000087756.1\|4249603_4249816_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_120795389.1\|4249870_4249960_+	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_000203370.1\|4250585_4250771_+	hypothetical protein	NA	NA	NA	NA
WP_001047121.1\|4251931_4252684_-	antitermination protein	K7PGU5	Enterobacteria_phage	2.1e-133	96.8
WP_001531701.1\|4252697_4253747_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.7e-113	57.6
WP_023147795.1\|4253748_4254027_-	hypothetical protein	I6PCV7	Cronobacter_phage	7.4e-12	48.4
WP_000980999.1\|4254093_4254345_-	hypothetical protein	NA	NA	NA	NA
WP_000887491.1\|4254561_4254774_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
WP_021568046.1\|4255332_4255998_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001366387.1\|4256051_4256285_-	hypothetical protein	I6S1S6	Salmonella_phage	2.9e-17	67.9
WP_001151183.1\|4256281_4256704_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.3e-65	92.8
WP_021568047.1\|4256744_4257710_-	hypothetical protein	U5P0A0	Shigella_phage	6.5e-55	59.6
WP_021568048.1\|4257690_4258212_-	hypothetical protein	NA	NA	NA	NA
WP_000476994.1\|4258195_4258423_-	transcriptional regulator	NA	NA	NA	NA
WP_136746533.1\|4258500_4258908_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.2e-23	45.4
WP_000379575.1\|4259100_4259256_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_021520754.1\|4259257_4259833_+	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|4260319_4260508_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083280.1\|4260504_4260696_+\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_021520755.1\|4260789_4263261_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
WP_001296941.1\|4263348_4263585_+	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_000877001.1\|4263619_4264900_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	6.6e-156	62.3
WP_001360138.1\|4264919_4265030_-	hypothetical protein	NA	NA	NA	NA
WP_000836084.1\|4265087_4266107_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	7.4e-17	25.9
WP_001298659.1\|4266118_4267333_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	2.8e-47	29.5
WP_000598292.1\|4267538_4267865_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000705201.1\|4267999_4268341_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138584.1\|4268375_4268936_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001357324.1\|4268938_4269649_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001357323.1\|4269756_4270062_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_000148699.1\|4270318_4270933_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	6.6e-29	36.3
4271005:4271020	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019456

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP019455

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection