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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019653 Paenibacillus larvae subsp. larvae DSM 25430 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP019654 Paenibacillus larvae subsp. larvae DSM 25430 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP019652 Paenibacillus larvae subsp. larvae DSM 25430 chromosome, complete genome 1 crisprs cmr1gr7,cas10,cmr3gr5,cmr5gr11,cmr6gr7,csa3,c2c10_CAS-V-U3,cas14j,DinG,DEDDh,cas3 2 6 36 1

Results visualization

1. NZ_CP019653
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 10304 : 19765 8 Paenibacillus_phage(66.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP019652
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019652_1 1615730-1616296 Orphan I-C
8 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019652_1 1.1|1615762|32|NZ_CP019652|PILER-CR,CRT 1615762-1615793 32 NZ_CP019652.1 2659342-2659373 1 0.969
NZ_CP019652_1 1.8|1615763|31|NZ_CP019652|CRISPRCasFinder 1615763-1615793 31 NZ_CP019652.1 2659343-2659373 1 0.968

1. spacer 1.1|1615762|32|NZ_CP019652|PILER-CR,CRT matches to position: 2659342-2659373, mismatch: 1, identity: 0.969

ttgtttcgatgctatatttatacgcatcaata	CRISPR spacer
ttgtttcgatgctatatttgtacgcatcaata	Protospacer
*******************.************

2. spacer 1.8|1615763|31|NZ_CP019652|CRISPRCasFinder matches to position: 2659343-2659373, mismatch: 1, identity: 0.968

tgtttcgatgctatatttatacgcatcaata	CRISPR spacer
tgtttcgatgctatatttgtacgcatcaata	Protospacer
******************.************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019652_1 1.3|1615894|37|NZ_CP019652|PILER-CR,CRT 1615894-1615930 37 KT361653 Paenibacillus phage Paisley, complete genome 41256-41292 0 1.0
NZ_CP019652_1 1.3|1615894|37|NZ_CP019652|PILER-CR,CRT 1615894-1615930 37 NC_028746 Paenibacillus phage Harrison, complete genome 41333-41369 0 1.0
NZ_CP019652_1 1.6|1616097|37|NZ_CP019652|PILER-CR,CRT 1616097-1616133 37 KT361653 Paenibacillus phage Paisley, complete genome 41256-41292 0 1.0
NZ_CP019652_1 1.6|1616097|37|NZ_CP019652|PILER-CR,CRT 1616097-1616133 37 NC_028746 Paenibacillus phage Harrison, complete genome 41333-41369 0 1.0
NZ_CP019652_1 1.10|1615895|36|NZ_CP019652|CRISPRCasFinder 1615895-1615930 36 KT361653 Paenibacillus phage Paisley, complete genome 41257-41292 0 1.0
NZ_CP019652_1 1.10|1615895|36|NZ_CP019652|CRISPRCasFinder 1615895-1615930 36 NC_028746 Paenibacillus phage Harrison, complete genome 41334-41369 0 1.0
NZ_CP019652_1 1.13|1616098|36|NZ_CP019652|CRISPRCasFinder 1616098-1616133 36 KT361653 Paenibacillus phage Paisley, complete genome 41257-41292 0 1.0
NZ_CP019652_1 1.13|1616098|36|NZ_CP019652|CRISPRCasFinder 1616098-1616133 36 NC_028746 Paenibacillus phage Harrison, complete genome 41334-41369 0 1.0
NZ_CP019652_1 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP020329 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence 35867-35897 2 0.935
NZ_CP019652_1 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP019796 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence 29492-29522 2 0.935
NZ_CP019652_1 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP019661 Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence 30453-30483 2 0.935
NZ_CP019652_1 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP019658 Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence 30454-30484 2 0.935
NZ_CP019652_1 1.16|1616232|32|NZ_CP019652|CRT 1616232-1616263 32 NZ_CP020329 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence 35866-35897 3 0.906
NZ_CP019652_1 1.16|1616232|32|NZ_CP019652|CRT 1616232-1616263 32 NZ_CP019796 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence 29491-29522 3 0.906
NZ_CP019652_1 1.16|1616232|32|NZ_CP019652|CRT 1616232-1616263 32 NZ_CP019661 Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence 30452-30483 3 0.906
NZ_CP019652_1 1.16|1616232|32|NZ_CP019652|CRT 1616232-1616263 32 NZ_CP019658 Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence 30453-30484 3 0.906
NZ_CP019652_1 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP019720 Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence 18377-18407 4 0.871
NZ_CP019652_1 1.16|1616232|32|NZ_CP019652|CRT 1616232-1616263 32 NZ_CP019720 Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence 18376-18407 5 0.844

1. spacer 1.3|1615894|37|NZ_CP019652|PILER-CR,CRT matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

2. spacer 1.3|1615894|37|NZ_CP019652|PILER-CR,CRT matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

3. spacer 1.6|1616097|37|NZ_CP019652|PILER-CR,CRT matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

4. spacer 1.6|1616097|37|NZ_CP019652|PILER-CR,CRT matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

5. spacer 1.10|1615895|36|NZ_CP019652|CRISPRCasFinder matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

6. spacer 1.10|1615895|36|NZ_CP019652|CRISPRCasFinder matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

7. spacer 1.13|1616098|36|NZ_CP019652|CRISPRCasFinder matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

8. spacer 1.13|1616098|36|NZ_CP019652|CRISPRCasFinder matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

9. spacer 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder matches to NZ_CP020329 (Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

10. spacer 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder matches to NZ_CP019796 (Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

11. spacer 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder matches to NZ_CP019661 (Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

12. spacer 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder matches to NZ_CP019658 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

13. spacer 1.16|1616232|32|NZ_CP019652|CRT matches to NZ_CP020329 (Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

14. spacer 1.16|1616232|32|NZ_CP019652|CRT matches to NZ_CP019796 (Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

15. spacer 1.16|1616232|32|NZ_CP019652|CRT matches to NZ_CP019661 (Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

16. spacer 1.16|1616232|32|NZ_CP019652|CRT matches to NZ_CP019658 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

17. spacer 1.15|1616233|31|NZ_CP019652|CRISPRCasFinder matches to NZ_CP019720 (Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
cttaaagccgaccgccatatagcgcggctat	Protospacer
  * ********************.******

18. spacer 1.16|1616232|32|NZ_CP019652|CRT matches to NZ_CP019720 (Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaaagccgaccgccatatagcgcggctat	Protospacer
   * ********************.******

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 115570 : 183251 53 Paenibacillus_phage(31.82%) transposase,protease,integrase attL 179706:179722|attR 190597:190613
DBSCAN-SWA_2 217638 : 292518 58 Paenibacillus_phage(26.32%) bacteriocin,transposase NA
DBSCAN-SWA_3 309997 : 455868 118 Paenibacillus_phage(33.33%) integrase,transposase,tRNA attL 312892:312951|attR 383282:384670
DBSCAN-SWA_4 459407 : 519731 53 Paenibacillus_phage(43.75%) transposase,protease NA
DBSCAN-SWA_5 528800 : 593163 58 Paenibacillus_phage(52.94%) bacteriocin,transposase,tRNA NA
DBSCAN-SWA_6 596280 : 647637 54 Paenibacillus_phage(46.15%) transposase,holin NA
DBSCAN-SWA_7 654458 : 706018 53 Paenibacillus_phage(73.68%) transposase,coat,holin NA
DBSCAN-SWA_8 717998 : 794463 54 Paenibacillus_phage(41.18%) transposase,tRNA,holin NA
DBSCAN-SWA_9 805097 : 867045 51 Paenibacillus_phage(21.74%) transposase NA
DBSCAN-SWA_10 969818 : 1064072 100 Paenibacillus_phage(63.64%) terminase,tRNA,transposase,protease,coat,integrase attL 998802:998861|attR 1044323:1045711
DBSCAN-SWA_11 1097493 : 1153892 54 Paenibacillus_phage(35.71%) transposase,integrase attL 1097374:1097433|attR 1152549:1153936
DBSCAN-SWA_12 1193345 : 1237565 42 uncultured_Mediterranean_phage(25.0%) transposase,protease NA
DBSCAN-SWA_13 1308021 : 1382245 56 Paenibacillus_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_14 1543073 : 1649462 108 Paenibacillus_phage(61.9%) coat,transposase,tRNA NA
DBSCAN-SWA_15 1688922 : 1804173 58 Paenibacillus_phage(42.11%) transposase NA
DBSCAN-SWA_16 1850925 : 1908838 47 Paenibacillus_phage(73.33%) bacteriocin,transposase NA
DBSCAN-SWA_17 1913959 : 1987743 42 Paenibacillus_phage(46.67%) transposase NA
DBSCAN-SWA_18 2019050 : 2072761 41 Paenibacillus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_19 2164924 : 2219461 59 Paenibacillus_phage(39.13%) integrase,transposase,protease,tRNA attL 2203846:2203860|attR 2219475:2219489
DBSCAN-SWA_20 2297906 : 2389505 100 Paenibacillus_phage(44.23%) tail,transposase,plate NA
DBSCAN-SWA_21 2468126 : 2534587 54 Paenibacillus_phage(29.41%) transposase,tRNA NA
DBSCAN-SWA_22 2540724 : 2592832 42 Paenibacillus_phage(47.06%) transposase,protease,tRNA NA
DBSCAN-SWA_23 2607387 : 2746321 143 Paenibacillus_phage(79.07%) terminase,tRNA,tail,portal,transposase,protease,coat,integrase attL 2620598:2620614|attR 2702861:2702877
DBSCAN-SWA_24 2821750 : 2883399 57 Paenibacillus_phage(20.0%) tail,transposase,protease,tRNA NA
DBSCAN-SWA_25 2924562 : 3051107 116 Paenibacillus_phage(34.62%) tRNA,holin,transposase,protease,coat NA
DBSCAN-SWA_26 3065707 : 3117531 52 Paenibacillus_phage(72.73%) integrase,transposase,protease,tRNA attL 3051782:3051795|attR 3111385:3111398
DBSCAN-SWA_27 3122093 : 3190641 55 Paenibacillus_phage(26.67%) transposase,integrase attL 3121974:3122033|attR 3144719:3146107
DBSCAN-SWA_28 3199545 : 3211652 14 Paenibacillus_phage(50.0%) transposase,integrase attL 3190918:3190933|attR 3214696:3214711
DBSCAN-SWA_29 3251490 : 3295765 33 Paenibacillus_phage(44.44%) transposase,tRNA NA
DBSCAN-SWA_30 3337760 : 3395918 48 Paenibacillus_phage(50.0%) transposase,coat NA
DBSCAN-SWA_31 3399007 : 3455638 47 Bacillus_phage(30.0%) transposase,tRNA NA
DBSCAN-SWA_32 3477407 : 3524033 41 Paenibacillus_phage(25.0%) transposase,protease,tRNA,holin NA
DBSCAN-SWA_33 3532477 : 3585272 50 Paenibacillus_phage(35.71%) bacteriocin,transposase,integrase attL 3532434:3532493|attR 3549697:3551087
DBSCAN-SWA_34 3598514 : 3656071 60 Paenibacillus_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_35 3662763 : 3728861 52 Paenibacillus_phage(53.33%) transposase,tRNA NA
DBSCAN-SWA_36 3913142 : 3981072 55 Paenibacillus_phage(33.33%) bacteriocin,transposase,tRNA NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP019652.1|WP_024094606.1|2618291_2618567_+|hypothetical-protein 2618291_2618567_+ 91 aa aa NA NA NA 2607387-2746321 yes