CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019644	Vitreoscilla sp. C1 chromosome, complete genome	2 crisprs	DEDDh,cas3,csa3,WYL,DinG	0	4	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019644_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019644_1

1387025-1387416

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCGGCCTGTATGGCCGTGAAC	CRISPRCasFinder
TTTCTAAGCGGCCTGTATGGCCGTGAACA	CRT
TTTCTAAGCGGCCTGTATGGCCGTGAACA	PILER-CR

6 spacers

The CRISPR arrays of NZ_CP019644_1

>merge|NZ_CP019644|1|1387025-1387416|CRISPRCasFinder,CRT,PILER-CR
CTTCTAAGCGGCCTGTATGGCCGTGAACAACATCTGGGCAAAAGTAAAAACTGGCGAAACTTTCTAAGCGGCCTGTATGGCCGTGAACACAAAAAGAATTGGAAACTTTGGGCATGACTGCTTTCTAAGCGGCCTGTATGGCCGTGAACACGGAAACCATTTCTAAAGCGGGTGTCATGTCGTTTCTAAGCGGCCTGTATGGCCGTGAACCCTTGGTTTCGATTGCGCCAACTCCAATCACCTTTCTAAGCGGCCTGTATGGCCGTGAACACACATAGAGTCTGGCAAGATTTACAGTGTTGATTTCTAAGCGGCCTGTATGGCCGTGAACAATTGCGCCAAGACACGGCGATTAGAGCGCATTTTCTAAGCGGCCTGTATGGCCGTGAACA

>NZ_CP019644|1|1|1387025-1387415|CRISPRCasFinder
CTTCTAAGCGGCCTGTATGGCCGTGAAC	AACATCTGGGCAAAAGTAAAAACTGGCGAAAC
TTTCTAAGCGGCCTGTATGGCCGTGAAC	ACAAAAAGAATTGGAAACTTTGGGCATGACTGC
TTTCTAAGCGGCCTGTATGGCCGTGAAC	ACGGAAACCATTTCTAAAGCGGGTGTCATGTCG
TTTCTAAGCGGCCTGTATGGCCGTGAAC	CCTTGGTTTCGATTGCGCCAACTCCAATCACC
TTTCTAAGCGGCCTGTATGGCCGTGAAC	ACACATAGAGTCTGGCAAGATTTACAGTGTTGA
TTTCTAAGCGGCCTGTATGGCCGTGAAC	AATTGCGCCAAGACACGGCGATTAGAGCGCAT
TTTCTAAGCGGCCTGTATGGCCGTGAAC

>NZ_CP019644|1|1|1387025-1387416|CRT
CTTCTAAGCGGCCTGTATGGCCGTGAACA	ACATCTGGGCAAAAGTAAAAACTGGCGAAAC
TTTCTAAGCGGCCTGTATGGCCGTGAACA	CAAAAAGAATTGGAAACTTTGGGCATGACTGC
TTTCTAAGCGGCCTGTATGGCCGTGAACA	CGGAAACCATTTCTAAAGCGGGTGTCATGTCG
TTTCTAAGCGGCCTGTATGGCCGTGAACC	CTTGGTTTCGATTGCGCCAACTCCAATCACC
TTTCTAAGCGGCCTGTATGGCCGTGAACA	CACATAGAGTCTGGCAAGATTTACAGTGTTGA
TTTCTAAGCGGCCTGTATGGCCGTGAACA	ATTGCGCCAAGACACGGCGATTAGAGCGCAT
TTTCTAAGCGGCCTGTATGGCCGTGAACA

>NZ_CP019644|1|1|1387026-1387416|PILER-CR
TTCTAAGCGGCCTGTATGGCCGTGAACAA	CATCTGGGCAAAAGTAAAAACTGGCGAAACT
TTCTAAGCGGCCTGTATGGCCGTGAACAC	AAAAAGAATTGGAAACTTTGGGCATGACTGCT
TTCTAAGCGGCCTGTATGGCCGTGAACAC	GGAAACCATTTCTAAAGCGGGTGTCATGTCGT
TTCTAAGCGGCCTGTATGGCCGTGAACCC	TTGGTTTCGATTGCGCCAACTCCAATCACCT
TTCTAAGCGGCCTGTATGGCCGTGAACAC	ACATAGAGTCTGGCAAGATTTACAGTGTTGAT
TTCTAAGCGGCCTGTATGGCCGTGAACAA	TTGCGCCAAGACACGGCGATTAGAGCGCATT
TTCTAAGCGGCCTGTATGGCCGTGAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019644.2\|WP_104931842.1\|1397997_1398537_-\|DUF1064-domain-containing-protein	unknown	unknown	gnl\|CDD\|283910
NZ_CP019644.2\|WP_019959121.1\|1386074_1386290_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP019644.2\|WP_171461021.1\|1382783_1384370_-\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP019644.2\|WP_104931836.1\|1389877_1392592_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376242
NZ_CP019644.2\|WP_104931826.1\|1375588_1375912_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_171461022.1\|1384599_1385433_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
NZ_CP019644.2\|WP_104931825.1\|1375059_1375533_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_171461018.1\|1376954_1377119_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_104931838.1\|1393178_1393544_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_171461020.1\|1381491_1382787_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157
NZ_CP019644.2\|WP_171461017.1\|1376126_1376507_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_171461025.1\|1396511_1397339_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_171461019.1\|1380244_1381357_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|379536
NZ_CP019644.2\|WP_104931839.1\|1393880_1395467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_171461210.1\|1377115_1380118_-\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP019644.2\|WP_155970576.1\|1396303_1396543_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_104931837.1\|1392591_1393080_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376207
NZ_CP019644.2\|WP_171461023.1\|1387589_1389866_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376215
NZ_CP019644.2\|WP_171461024.1\|1395466_1396186_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_019959111.1\|1397339_1398005_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|237361

Protein	Function_ID	Function_description	E-value
NZ_CP019644.2\|WP_104931842.1\|1397997_1398537_-\|DUF1064-domain-containing-protein	gnl\|CDD\|283910	pfam06356, DUF1064, Protein of unknown function (DUF1064). This family consists of several phage and bacterial proteins of unknown function.	3.33839e-20
NZ_CP019644.2\|WP_019959121.1\|1386074_1386290_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	5.29615e-35
NZ_CP019644.2\|WP_171461023.1\|1387589_1389866_-\|hypothetical-protein	gnl\|CDD\|376215	pfam18796, LPD1, Large polyvalent protein-associated domain 1. This is an alpha helical domain with a conserved ExxARxxE motif that is found in polyvalent proteins of both conjugative elements and phages and prophages.	1.56408e-26
NZ_CP019644.2\|WP_171461021.1\|1382783_1384370_-\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	4.56284e-143
NZ_CP019644.2\|WP_104931836.1\|1389877_1392592_-\|hypothetical-protein	gnl\|CDD\|376242	pfam18823, InPase, Inorganic Pyrophosphatase. A type I Inorganic Pyrophosphatase family domain that is found in polyvalent proteins.	3.81463e-39
NZ_CP019644.2\|WP_019959111.1\|1397339_1398005_-\|transcriptional-regulator	gnl\|CDD\|237361	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional.	1.4519e-05
NZ_CP019644.2\|WP_171461210.1\|1377115_1380118_-\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	2.23864e-165
NZ_CP019644.2\|WP_171461022.1\|1384599_1385433_-\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	1.25904e-18
NZ_CP019644.2\|WP_171461019.1\|1380244_1381357_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|379536	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	6.40134e-18
NZ_CP019644.2\|WP_104931837.1\|1392591_1393080_-\|hypothetical-protein	gnl\|CDD\|376207	pfam18788, DarA_N, Defence against restriction A N-terminal. This is an alpha and beta fold domain. It has a conserved aspartate, and an asparagine residue followed by a basic residue in a Nx+ motif. This predicted structural domain is mainly found in polyvalent proteins of phages/prophages. The P1 hdf protein, a solo version of the domain, and the Phage P1 DarA protein that contains this domain are components of the phage P1 head. The domain might be involved in a counter-restriction activity.	6.54785e-27
NZ_CP019644.2\|WP_171461020.1\|1381491_1382787_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.44433e-36

>NZ_CP019644.2|WP_019959121.1|1386074_1386290_-|cold-shock-protein
MSTQQTGTVKWFNDSKGFGFITPDNGGAELFAHFSAITSEGFRTLAENQRVSFNSESGPKGPQATNIQAIA
>NZ_CP019644.2|WP_171461022.1|1384599_1385433_-|hypothetical-protein
MNALTFNQVSLNPVSQPDNQIWITATELANALGYKKADAVTQIFNRNEDEFSSSMSMTLKMSVIRKTGNIMMPVRIFSLRGCHLVAMFAKTEIAKQFRKWVLDLIETEAQKFTGRSTTTDERTGLRDAVNAVVSKKGLLYPDAYKLVHQRFNVSSIDELTLEQVGEATEYLHRLLLTTEKPSGYVLEEHQVKNLVNAAQSMDWIFCWFNHYKMALSVINPKMVSSVSEHFKVVWIHTQNFGRKHDMVALNHTTMRDYPWAADYESQKDWRKAVGIYK
>NZ_CP019644.2|WP_171461021.1|1382783_1384370_-|type-I-restriction-modification-system-subunit-M
MSEEQLRQLQRQLWSIADALRGKMNADEFRDYILGFIFYKYLSEKMVAYANKILVSDNLIYDQLKPSDEHYNAYISAVKNSIVKELGYFLTPAELFQSIAERSKQDSSGAGYILDDLQQVLRNIEQSTLGTDSADDFSHLFDDLDLTSTKLGKTADDRNETIVQIIQRLALIDFDLANTDSDVLGDAYEYLIGEFASGAGKKAGEFYTPQPVSTLLARLVTVNNTELRNVYDPTCGSGSLLLRVKREANKISKIYGQELNRTTYNLARMNMLLHDVHFADFEIKQDDTLKKPQHLDLRFDAIVANPPFSAHWSADPMLSSTDERFSQYGKLAPKTKADLAFVQHIVYQLSEEGTAAIVLPHGVLFRGAAEGHIRQYLIEQLNVIDAIIGLPANLFYGTSIPTCILVLKKCRQNPNDIVFIDASNDFEKVKTQNKLLPEHIERIVTALNTRQSEDKYASVASIESIKANDYNLNIPRYVDTFEAEAAIDLSAVAAALRQVKADSVAIEAQITDFCSELGIENPFAEGSK
>NZ_CP019644.2|WP_171461020.1|1381491_1382787_-|restriction-endonuclease-subunit-S
MNVPKLRFKGFQDAWEVHKFSEKFTFHNTNSYSRALLAEQGSIMNIHYGDIHTKFSALFDVAKEDVPFLSCKVDTQKIATNQFLQVKDLIIADASEDYKDIGKTIEVVNLNNQKAVAGLHTYIARPNSPSALGFNSYLMQTFKVREQIQKLATGISVLGISKGNLGNVELNIPCLQEQTKIASFLSAVDDKIAALRQEHDLWQQYKQGMMQQLFSQKLRFQDDNGQDFPDWKTTIFSEKFTFHQTNSYSRALLSEQGEIMNIHYGDIHTKFSSLFDATKEKVPFLSAEVEISKLDEERFLRVGDLVIADASEDYKDIGKTIEIVNLGNQKLVAGLHTYIARPKQDFALGFHGYLMQTLAVRAQIQKLATGISVLGISKTNLGKVEIKIPTLAEQTKIAACLSSIDAKIDALAQQLEQARVWKQGLLQQMFV
>NZ_CP019644.2|WP_171461019.1|1380244_1381357_-|PD-(D/E)XK-nuclease-family-protein
MDSIDVAVDELSRLQSVLEQAKSLHTSKKEMTFFDTALRKHYENPTTELLAFFLNSENEHGLNGVFYQGLLAALRECGVAQSDTEAWGDVQNVHTEVVTSKGRIDLLIETDQAVLAIECKIGHHQNNPFTDYERYVRQHYPGKKQVFLILCVDGKSHAAAWTGLSYRTLATHTRPLLAEALLNQPYNKWTLFAREFLMHWEQLGVDVMNEQQVDFVVEHLGDIKKMVTLRDDFYRHVRDHITEALENQLKGYEVHYRVHTWPNGPALRFANNHCPTWTEVVVNLHIDEKPLQYSLQIRIDKQTDALVKLACKELKKLSWIVNDGDNTWAEINGRYWVCAWEGGDFDLTEVCNEVVTLMRILMKVEAARAA
>NZ_CP019644.2|WP_171461210.1|1377115_1380118_-|type-I-restriction-endonuclease-subunit-R
MVQSEYELEKALLVQLAGTGDSKSGLGYDLVALPDEATMLRNLKRQLEVFNELTTPLSEREFHLVLNYLSQGSTVFERAQILRSRYQLQRDNGDTHSIQFINQEHWCQNEFQVTQQVTIHNPQQNTYKTRFDVTILINGLPLVQIELKRLGVDLKEAFNQIDRYHRDSYWVGHGLFLYTQIYVISNGASTKYFANNHQASFDFTFSWADKDNNIYSDLHQFSDHFLRPCHVAKMITHYTVLNHGDKVLMLFRPYQFYAAEALIERAKLSNQNAYIWHTTGSGKTLTSFKVSQVIQTLPEVDLVMFVVDRKDLDYKTAIEFNHYTDGCVDTTTNTSSLIKQITDSQAQGGKKKLIVTTLQKLNIAVTSPKYLNQISYLQDKKVVFIFDECHRSQFGQTHQNIKKFFTKVQMFGFTGTPILEENVSRANGIPQTTKDLFNECLHKYVITDAIRDDNVLRFSVEYVGKYQEKAQERVSNNELDIVSDLEPEDEDVTDHIQTTASKETLEDERRLEKIVRYIVDAHPKKTNRYQFNAIFCVSSVQALIKYYQLFEKVQAEALANNPNYRKLKVATIFSYAANEAENKDGQQDMGDDGEQPQVSRDHLERFIANYNQQYGSQFSLKDTASFYNYYQDITKRVEKHAKQPQEAQIDILLVVNMFLTGFDAKTLNTLYVDKNLKYHGLIQAFSRTNRIYNASKTHGNIVCFRNLKDKTDEAVTLFANTNANETVLLQPYSEYLAKYHKAVDALLGITPTVQSVDALADENEQAEFVKAYRDLLRLQTTLKSFSDFNTDDLAMDDNTFEGFKSKYLDLYDKVKRHKKIPTDAPAAKTSVLDELDFETELIHTDIINVAYILNLLKGVADEDHSDWISGQETFMRKVQAILDIASKEPKLRVKLPLLEKFVQEVLPGIQSSEAFDTAFADFWEQEKQQAIHDLVEEEQLKDECFQTMVESFIFTNTMPRDDEIAKSLSFVPRILERESTLTRIKARFERFVGQFVEGMV
>NZ_CP019644.2|WP_171461018.1|1376954_1377119_-|hypothetical-protein
MSVGDSPAALIAAAEGFKDFYPETWFAGTLEFTIDDEGTNWSMFDEDMEARILG
>NZ_CP019644.2|WP_171461017.1|1376126_1376507_-|hypothetical-protein
MNQQNQKITKRVLEVAENVWEKTYSSAQKVLGAINNNGYNYNLVNGCVTPSVDQIIVILKTMLVRLDSLSNLTPVFVSHEQSYEIEKALINSKQVVLQLESIMVAMSNNDLDECDKLFKLLEQQQF
>NZ_CP019644.2|WP_104931826.1|1375588_1375912_+|hypothetical-protein
MTTNTYPNNFQLSLIDEMVAIEGIQDTTEFQDALHAAAKSSLEALQSQAKNRVVYVLCGSDTGIEMLQRVAAQYGMDYFECVKLHTEATMPAEVLRGLQFMNLVGYF
>NZ_CP019644.2|WP_104931825.1|1375059_1375533_+|hypothetical-protein
MSQEVMIRASFGSYEGKPVGILSMVMDIDGKPTLICTQEETPPKFGLQDGFILITDLDGIGATLLFDQTQFITAIEAYKELKAKGTIVLEPSLQKHDVSDSVQIAGLKDSGRFNYQVQNVGNGAAAILATALYFKKYCGTQTVLSGMKGFMNMLTTV
>NZ_CP019644.2|WP_171461023.1|1387589_1389866_-|hypothetical-protein
MELNTMERLRLNGELKTAIEARNAEADVLKKLDWIKVVQDLRLQLGLAVTATESEPAAEPEPLVEPEPAAEPKESDQMQTEAESESNEAVSQQPEAPMTAEDTDNQLPPSEDEVGLDEDDLAAAANIDDDLSDTTTAENYRWKDTAYIAGARKELAQKSILQAKRDGQRLNSNDIDWDELAKDPRLSESLIVKDNVFGRVDWAALADKGMPSQVAYFISRVYANMDKMPLHPLSQHSQKNYVQAISNLRERLEVCLTFKDVAAVMNEIIVAMPSIKLMRMLYEDELTAGITFEENIDNNFKQISVRGREKLLSYDSQVWAELGERFFSWTSKSVNTTLRNAQRDKKYADWSNWCADFKTGTDGEGNAAPEGASKPKKPSFQLESAEDIERIGGQEVDLTSSQQLQDMFGFKGIQSGNWVLKDKSAAEFHMKNAAAAMLDMSDVLGIEPQYLGLKGNLALAFGARGKKGALAHYESSSKVINITKMKGGGSLGHEYFHALDNLIKDLSTQTVGSASFMGTSNPDDLPDVDLAQVFKALRVAMMKTDGVLKFEYPKAFIPDVHQPSADTKAFLESMAGNFLRGSRLPLNAAMSDLKKWIASHANYATTPPKTQELRSNVAYTLLVRHWTLGSESDVDISADGVLTFDGLPGQSEFYKNAIELDMGKEGKYWSKDFEMAARAFSAYLQDRLEEQGRKNDYLAYSTQGGNGRVGERAYPQGEERQRINDAFDGLFKVIREKKVLETATANKALMDSLFDCVH
>NZ_CP019644.2|WP_104931836.1|1389877_1392592_-|hypothetical-protein
MGNVTRNENGRVTSVYGLPVHIESVAGSYRIKSGRPPILVSDDYGELVGTKGADQDPIDCYVGPYPETNTVYVINQDKQGVGFDEHKVMFGFLDQDHAINVYSLGCFGKKPMSVVACTVGQFKWWLEYGNHKEAMSAQSLPFDSYSETAMQQIPEYDWDQPTAAASRVLYDMRVMDSAYGQLIEANNHRDLLDQIEHQDGGELGVLDALVIPNNQIQKKAAQIGMALNRAAGDDIKVVEEGGVEVTEPYRQGGTTNIAMLFSMSDGQTVSVFFHNPDVTPNKLSPDDSMVSWKWMLNKKDITIVVAKENGQDQSIAAIAKKIMALVEANATKFARANAKAAENEAEIKATEERIEQKKNVLQSLLDQIAALENGSSVVVVEPKPQQVPNGVEPSEMNIDLLNTDIHAFMNAGEADLYDAVQRYMRENFQGRYVKTVIGDVLFTSVATREMRLGTDKDRFRAAIIPFVPNTLKNGDYLGREGVKKDRKDSFVAFHRFKGEAVIGSYTVTHIVTVAERENAKFEFLAYHNKLKGAEPKLDTGSNNSVLDALGNNLVGRSLLGQTPMNSNVAAFDSAVNDSGWNIEIVSVIDSNGEHVANLEDVVNSQPEPALEPEPVLNSQLEPVQFVGNELGDFDLSTDEGKKAMRAAARTHLESLRGKWVDCPAMPRDENGDVRKVEIRNRSVKEFIRYTGNPVKILLAAKIEEIIETARNAVVEPNFKLAAKPGTFEYYKLENTIAVDGMLHQVVVMIERDIQGYLHYDLMLPNKVKATLDSAALQPEPFPTTKAGVSSLINTATFDDVSQQNESSLLNLFVKVQNENGEWVELEDTFEPEFEPEETDESGHDADRAFLKEVIEGLVDVMGEGFHERMTAVALRYNGGDNTEMQAMVEQAVNAYTAKLDELSQ
>NZ_CP019644.2|WP_104931837.1|1392591_1393080_-|hypothetical-protein
MADTNHLFTWDELKGNDTTAPKKLVTAFKRAGAEIAASWVAEKTKRENSITYREIGFTLADSQTIVLRVKQTGDIYQVRMNGKILPMKEQDDIKKALAEIVNDLDANATKFQKALARKKATPPKGSGNTRVTRKAALESQEAELDGLIAEAQATLAALQGGV
>NZ_CP019644.2|WP_104931838.1|1393178_1393544_-|hypothetical-protein
MEKAIILGFIAVGLVGCATVEQSKQVSSTEHAIQQETQVIYFTGPYDLTIELKSNDGFKTATMMDNSGKNHLLKIAVSGSGMRMVGNDGVSIHFKNFNGLNEGVVELVKDKPIPIKEFKAK
>NZ_CP019644.2|WP_104931839.1|1393880_1395467_-|hypothetical-protein
MAIQSILSLPIYHDFLKEYQFNLEGFLFDLCGLTLTRDQQVLSKLAINPTSRISVVSGTGTGKTAWLGGAALHSMWCFPVVEYDGKIEVGSNTYVGAPVIQQVADGVWKEMNDNFQRIKMLDGMGWLTGRTHPKAERWYMDGYKDQWFIAKIALGNADSVAIAGKHRYYQTIFIDEAAGVADSHYDVINGTQTQEGNRTFLFSQGVKTTGYFYDTHHTLSHINTPVDEGGWINLCFNSENAPHVSRKWLKAREVESGGRDSVEYRIRVLGQFAEDEERTLIHRRMLDEAMANTTPLIAEDDEDWGWFLLCDVAAGEYRDYSVATLAKVKGVGENRVIDFIDIPIFSNGIDVKQFKGRIAEEAAKYSNIRLVIDSGGNGLQLCKDLEDEGFDVVRVSWGKPNFKTEYKNRFINQRAQCSVHTRDAIRQGRIRFLWNLPKKTKEMFIYQATHIPYNFTDSGVLRYQIMGKEKMAAQGIKSPDIFDTVCFANLEGVHYNVSDRADGGVGAQEKKKSALELAKAKMAAITIK
>NZ_CP019644.2|WP_171461024.1|1395466_1396186_-|hypothetical-protein
METKSKRTPTLKKNQNKPTPTRGAPKGTSKPANSGRKKATFEGEITKALDLAKKERKLYVEFSATLFLDILTDLTMPEPDTKRFKTLSGVLNGNRDKYPTMAAFLGWLRRDTSGELEKMYHEVMEANIQLMHDERFRVAYDIEHDIMMTERNGTFTPEWNKLFVQRGKVIIDALEWSLTRLAPAKYGNNLKVETTIEASTETLKLLAQDGAARRAAAFEAAERLAKELYEQQSGKSQDA
>NZ_CP019644.2|WP_155970576.1|1396303_1396543_-|hypothetical-protein
MKNQLAMMQLELPNMPLPMLKQLSLSEFEDLVTSKAWEKHQENDVDSARFEVLIKAISNAANAICKTLASGFKALASNR
>NZ_CP019644.2|WP_171461025.1|1396511_1397339_-|hypothetical-protein
MYIPPLVTARINAHMKELSIGDVIDLAAMPTLNNEAGVFHSVKQVVAETNVPIEAWTVQELYAGLLHYHTHAINGGQALVLDADTGADLSVYVLEDQDYPLHKIGRQVVADDLKYEFELDSESDSPDLLKMLPLTGASAVAIERCVLNGQVKGVTDKREAWRIACAAAQIHARDFEWSWLDEQHVSIDAYINENIQRILSMSVSDYAALMMAFEQGLLALDHIVRLRVFDDGFALMPTKGGEVYAPYRFCFDAIVPYGALEVWARHEEPIGDDAA
>NZ_CP019644.2|WP_019959111.1|1397339_1398005_-|transcriptional-regulator
MANAAPHTVTPSKRKETENMRLSRLAGERLQKTRTALGIKIYQVVAAFPGRIQKSHLSEWEHGEKPIPMWALRELAMFYGVSTDYLLCATDSSSELKHSLEINEMLHTVGQHYWSLMASKISGSIGQHAAKLHCYEEAVNSGVVLVEQIDRMIELNRKYFESEVRNGARVESALGHAKAAFMQAQIAGRRHRLVELTLPTEIEDVMQARLDLEPHPSVLEK
>NZ_CP019644.2|WP_104931842.1|1397997_1398537_-|DUF1064-domain-containing-protein
MSNTAIGKQERISTVEFNRRVAAGQLVQDAKGKWREADAKTGKPKATSKYGNKITKVDGRKFDSALEAQHYQLLKQQKEAGIIADFECQVRYPIADKVLNEDGSVYSHKIDYVADFAITHLDGRIELVDVKGMVLGLYKLKKALMWHRHRIKITEIFSSHHKKAKKAGKRPKTGESKHG

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Crispr_ID: NZ_CP019644_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019644_2

2065488-2065568

Orphan

Consensus_repeat	Method
TTACAGGACGCTTAAAGCGTCCTGTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019644_2

>merge|NZ_CP019644|2|2065488-2065568|CRISPRCasFinder
TTACAGGACGCTTAAAGCGTCCTGTAAAAAATCTAATACGCTTATTTAAAACATTACAGGACGCTTAGAGCGTCCTGTAAA

>NZ_CP019644|2|2|2065488-2065568|CRISPRCasFinder
TTACAGGACGCTTAAAGCGTCCTGTAAA	AAATCTAATACGCTTATTTAAAACA
TTACAGGACGCTTAGAGCGTCCTGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019644.2\|WP_081619548.1\|2052541_2053474_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP019644.2\|WP_019958009.1\|2051584_2052448_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP019644.2\|WP_019958005.1\|2058141_2059401_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223238
NZ_CP019644.2\|WP_019957993.1\|2071987_2073802_-\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|273882
NZ_CP019644.2\|WP_104932410.1\|2060030_2061518_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143448
NZ_CP019644.2\|WP_104932119.1\|2053650_2055057_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319958
NZ_CP019644.2\|WP_019957995.1\|2069457_2070114_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP019644.2\|WP_104932129.1\|2073881_2075192_-\|50S-ribosome-binding-GTPase	unknown	unknown	gnl\|CDD\|225448
NZ_CP019644.2\|WP_019957996.1\|2068986_2069370_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_104932409.1\|2050345_2051485_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP019644.2\|WP_104932126.1\|2068538_2068964_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019644.2\|WP_019957994.1\|2070170_2071916_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019644.2\|WP_019958001.1\|2064183_2065479_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP019644.2\|WP_158667249.1\|2065586_2066837_-\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP019644.2\|WP_019957991.1\|2075268_2076189_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019644.2\|WP_104932120.1\|2055090_2058129_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP019644.2\|WP_104932121.1\|2061629_2063075_+\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
NZ_CP019644.2\|WP_171461137.1\|2068094_2068466_+\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|378715
NZ_CP019644.2\|WP_171461136.1\|2063132_2064149_+\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|224966
NZ_CP019644.2\|WP_019957999.1\|2066921_2067836_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990

Protein	Function_ID	Function_description	E-value
NZ_CP019644.2\|WP_081619548.1\|2052541_2053474_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	4.19833e-16
NZ_CP019644.2\|WP_019958009.1\|2051584_2052448_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.77882e-35
NZ_CP019644.2\|WP_019958005.1\|2058141_2059401_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	1.67448e-143
NZ_CP019644.2\|WP_104932410.1\|2060030_2061518_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143448	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.	0
NZ_CP019644.2\|WP_104932119.1\|2053650_2055057_-\|VOC-family-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
NZ_CP019644.2\|WP_104932129.1\|2073881_2075192_-\|50S-ribosome-binding-GTPase	gnl\|CDD\|225448	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism].	0
NZ_CP019644.2\|WP_019957995.1\|2069457_2070114_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.90834e-08
NZ_CP019644.2\|WP_104932409.1\|2050345_2051485_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	3.1192e-118
NZ_CP019644.2\|WP_019957993.1\|2071987_2073802_-\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	gnl\|CDD\|273882	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.	0
NZ_CP019644.2\|WP_019957994.1\|2070170_2071916_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019644.2\|WP_019958001.1\|2064183_2065479_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	6.81636e-61
NZ_CP019644.2\|WP_158667249.1\|2065586_2066837_-\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	4.16244e-164
NZ_CP019644.2\|WP_019957991.1\|2075268_2076189_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019644.2\|WP_104932120.1\|2055090_2058129_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	3.56874e-86
NZ_CP019644.2\|WP_104932121.1\|2061629_2063075_+\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	4.38785e-123
NZ_CP019644.2\|WP_171461137.1\|2068094_2068466_+\|RcnB-family-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	9.1988e-13
NZ_CP019644.2\|WP_171461136.1\|2063132_2064149_+\|Ldh-family-oxidoreductase	gnl\|CDD\|224966	COG2055, COG2055, Malate/L-lactate dehydrogenases [Energy production and conversion].	6.99616e-116
NZ_CP019644.2\|WP_019957999.1\|2066921_2067836_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.24872e-68

>NZ_CP019644.2|WP_019958001.1|2064183_2065479_+|FAD-binding-oxidoreductase
MDLKHKCLWPDLVDHIPTYAALKEDVRTDVCVIGAGFTGLNAAIRLRELGKDVRVLEATHLAYGGSGRNVGLVNAGSWIKPDEFEKILGEKAGQKFNKAFGEVPYLVFEMIEKYQLDAQHTHTGTLHMAHNAKGSADIADRYHQWTRRGANMRLLTGAECQEYCGTDKIPSALLDLRCGTVNPFAYAKSLSEAAHKLGAHLHEHTKVVKIERQGSQWLVQTSNGHSVLADKIIIASNAYTEGDWTNITSALYPGYYYQVASKPLTGAAADSILPHKQGSWDTRTVLSSIRRDKDGRLILGSLGRGDNKPEWFLKKWADRVQQFYYPQLGKNVEWEYVWSGRIGFTDDHIPRLFEPELGVVAATGYNGRGVTTGTLMGRLMAEYVIEGNPDILPLPFKGVSECECKNSNLKSLFYETSFSAYHLGQCLNLVN
>NZ_CP019644.2|WP_171461136.1|2063132_2064149_+|Ldh-family-oxidoreductase
MHITPTQLTQLSHDILAAYGFTPEHQKSITHTLVTAQQDQCHSHGAWRLLGLIDTLKHGKISATATPTITQDVGSIVKIDAHMGSATTAFSVGLPRLIEKAQQNGIALLAINHCVHFSALWVEIEQLTQAGLIAINSTPSHAWVAPAGSTKPLLGTNPLGFGFPRINPQEPYVFDFATSATARGEIQLHHRHGTQMPEGLAIDAQGNPTTDPAAAMQGAMLTFGGHKGSAISTMVELLAGIAIGDMTSQESMAFADGTPTLPYGGEIIIAIDPKILLGDDWTAHQQRSEDFLNQFNASGARLPSQRRFKARAQNQQQGYIELDDNLYADLQNLLTLAN
>NZ_CP019644.2|WP_104932121.1|2061629_2063075_+|Na+/H+-antiporter-NhaC
MIKKYRNLERYPFWFDLAPLLITTAIMAVQFFIFKDFTPHIPLIIGICITGLFMALKGQTWSHMEKQMFTVMKVGLPAVLILMCVGMLISVWIAAGTVPTIVNAGLAVLSPSIFLPATCILACLVSLATGTSWGTVGTVGLAMMGIGDAMGIPLYWTAGAVVSGSFFGDKMSPLSDTTNLTPAVADVNLWDHIRGMLPCTVPALVISVLIYAYIGQGYSEANAAITTTDTIKNAMNANFQLGWLTLIPAAVVIYMGYRKYSAMGTICLGVALGALIAIFVQDVPVKDIFNILQNGYKAQTGISTVDSLLSKGGVMSMTWTVTLTMFSLAFVGALETYGTFDAILGKLENIIKSRMSLLSATYGSGLAVSLILGEVYTSLVLPGRLLQGKYKELGYDRTTLSRTLEDCGTLVSPLIPWNMGGGFVTATLGVPTIVYAPFAIFCWLSPLFGILYALTGWFVPRTEPVSKEQLQTARHAESLIS
>NZ_CP019644.2|WP_104932410.1|2060030_2061518_+|aldehyde-dehydrogenase-family-protein
MTLFSALNVDKNIYQGGDQIVRSPIDGSTIGLVNYLPAVDVAAVIDQSQAAFEQWRKIPAPRRGELVRILGEVLREHKEDLAQVVTLEAGKITQEALGEVQEMIDICDFAVGLSRQLYGLTIASERPGHHMRETWHPVGPVGIISAFNFPVAVWSWNAALALIAGNSIVWKPSEKTPLTAIACQALFEKAVARFGSDAPANLSTLIVGDRDAGEALVNDERVPLISATGSTRMGREVGKAVAARFGRSILELGGNNAMILTPSADLELATRAILFSAVGTAGQRCTTLRRLIVHKDVKAQVLEKLKKSYQTVSIGNPTENNLVGPLVDEASFNAMQDALAQAKEQGGEVFGGERQLADVYPDAYYVAPAIAEMPAQTDVVKHETFAPILYVLEYENFEEALRLNNEVPQGLSSCVFTTDVREAEIFQSAVGSDCGIANVNIGTSGAEIGGAFGGEKETGGGRESGSDAWKGYMRRQTNTINYSRELPLAQGIKFD
>NZ_CP019644.2|WP_019958005.1|2058141_2059401_-|aspartate-aminotransferase-family-protein
MQTAICSALSIVHPIELIKGQNAHVWDVSGKQYIDFVGGIGVLNLGHCHPRIVAAIQNQASQLIHSAFNAVPHQPYMQLAQALSNFIPSKTPFDVLLANSGAEATENALKIARLKTGRTGVIAFDGGFHGRTLAAVNLNGKVAAYKTKLGSLPGPVYHIPYPSEDNGITAAQAKIALERVLSVEVDINNIAAIIVEPIIGEGGFQLLNPEFAVYLRRFCDENGIALIFDEVQSGFGRSGKRFAFEHLNVAPDLLLMGKSIAGGVPLGAVAGDVKWMGDLPKGSLGGTYSGNPLACAAALATIDIMSQEDFFAQVAHNYSEVVSAYHQKWQEQGLPVGRLTGVGSMRGIELVDAEGQPDTDLLAKILPAAREQGLLLMPSGKYRNVIRLLPPLTIETDVLVEGLELLGRLLAEQTVATLA
>NZ_CP019644.2|WP_104932120.1|2055090_2058129_-|FAD-binding-oxidoreductase
MIPIHVAAKPLTEQFLSVLKQQGFDGDIETSDAQRTVYATDNSVYERTPQAIVLPKTTQDLQAITRLLAQPHFQSVTITARGGGTGTNGQSLTDGIVVDVSRHMNQILNIDVAKRQVTVQAGVVKDQLNAALKPYGLFFAPELSTSNRATVGGMINTDASGQGSCTYGKTRDHVLGLKTVLLGGEVLESKALSVSSWQQDIVQLPESLQNKFKSLYELVHQNQQAIQDAFPELNRCLTGYDLPHVLERDQFNINSVLCGAEGSLGLIAEATLNVLPIPTQRILVNISYANFQDALNDANALMAKQPLSIETVDSKVLGLAKADIVWNQVAEFFPEQAGKAAVMGINLVEFAGDDAPQLQQTVQKFLQHLQDDSSVERLNVTQAQGAVAIERVYSMRKRSVGLLGNVQGERRPQPFVEDTAVPPQNLAAYIAEFRQVLDEMQVEYGMFGHVDAGVLHVRPALDMKNSSDAAKIKPITDAVVALVHKHGGVLWGEHGKGLRSEYAPTFFGAVYPLIQQVKALFDPHNQFNPGKIATPTTQPHARLTAVDEVTFRGELDQKIATPVWNSFHNAVHCNGNGACYNYDTHDAMCPSWKALRDRVHSPKGRASLMKTWLREQGDVLAQENHIQNQSTFQSVMHQIALRFQDASKRSDDFSHEVYDAMKGCLSCKSCAGQCPVKVNVPDFKARFLQLYHHQNPRPLRDFAIGQLETGLPILTRFPKAYNMVMDNTWVQRLQEKVLKLVDAPRMSDEAVLDWAHFNVTVLDEKSLAQFDAHRFNSSNSVLLLQDAFTRYFDTPVWMAWLRLLQRLSIKVFVLPFAANGKPLQVHGFLGQFERLVRKNTAFLERAAQTGLPLVGLDPAMTLVYRQEYPKALNMRELPFEVLLPQEWLATRLDELTLRSPHPNEVFTLAGHCTEKTNAPNATRQWQQIFTHFGLTLNTVTTGCCGMSGTYGHEAEHQDTSKKIYSQSWQPMLAQALDTKRVLATGYSCRSQVKRLSHTRLQHPVEALLKHLS
>NZ_CP019644.2|WP_104932119.1|2053650_2055057_-|VOC-family-protein
MTQLTAQRSDTISPDQIRARFSQAMSDMYQQEVPLYGDLIQLVADVNADYLTKNPQEELILANSQELSRLNLERHGAIRVGKPEELFNIRRVFAVMGMYPVAYYDLASAGVPVHSTAFRAVTAEAMTESPFRVFCSLLRLELIDDEDLRERAQAILDKRNIFTEEALRLVDVAEQNGGLTEEEANVFVNEALETFRWHSDATVTADEYDALSSQHRLIADVVAFKGPHINHLTPRTLDIDEVQRLMPERGIDAKLSVEGPPRRHCPILLRQTSFKALNEDIRFTDQAEGEMGKHSARFGEIEQRGVALTAKGRAMYDQLLEEVRVKIGGAPTAANLDTYYTELAQIFSVLPDTHAQLHDEGLAFYHYRASAKGIELAGQLDASLSTAQLLEQGYLSIEPMTYEDFLPVSAAGIFQSNLGDAARGSAYGSMSNQDLFERDLGQKVLSEMDLYAQDSAQSLQDALKVLGL
>NZ_CP019644.2|WP_081619548.1|2052541_2053474_+|DMT-family-transporter
MKTQTWTIFVILGLVWGCNPYFTQMALPYLSPIELVWWRILCGMVPLLIIAIISKAMSWQHLRYAHHFFIMSLLATSLYYILYAYGTKLMPSGIAGVLSASIPLFTFISSMIFLRQESVSRAAMLGMAWASAGIVFIAEPWKAEGGINILGVAAILSGSLLIGLSFVYARKYLAPLKIKPIALSAYQMVFAFLSLLFTTPTANLGNVFQSTHATIALILGLGVMGTGIAYLAYYYLIETMGAVLASTSTYLPPVVALVIGYMFAGETINLMQSIGILILLIGVACIQFGDTVWRKWRPKSACHSAASCNK
>NZ_CP019644.2|WP_019958009.1|2051584_2052448_+|LysR-family-transcriptional-regulator
MSNYESQHPSLTALRVFTSVGRFHNITRAANELGISKGAVSQHLHKLEQTLDVKLFERHGKELSLTEQGRFYLADLRRAFDLIDQSTQRLTINQREWIISCTPTFAECWLIPRLSSLQQLLQGPIRIIASPQRANFIEDGVDIAIRQDNPPFSVAHSSYLLYHRDWVLVCHADLYDVYHQNIAEEKYLNLTFIGDSHHFETHIPDLSMKIQNMRSIRMSTAALSMHTCLNKLGMCLIDRFFIREHLETGRLKILDSFPDFQQDAFYLIHDKHKPLPEELIAWFKQQN
>NZ_CP019644.2|WP_104932409.1|2050345_2051485_+|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MALALAACGQNTEKAAASADAKPASATSGEGITVLIGTVNPLTGPLTHWGVDSANGIKLAIEDANNKKLVWDGKPVTFELISEDDMADPRVATQMADRLVDKKVSAVVGHFTSSTAIPASMTYDTAKIPHITYSVTGAKYTQQGFEHVYRVIASDAQQAVGMAKFAVEKLGIKTFSLVHDKGAYGEGLATDFGKEAEKLGAKMLSTEFTTTTSAEFSSVATAIKTKQPDFVLYGGMDAQAGPLAKELRKQGVTAQFMGSDGIKSEEMLKMIGPIDGVYASTAGATTDKMPGYSEFATRYQAAYNQPIATFAPYSYDATHVIIAAMDQAKSADPAKYAPLIRKTQMQGITGAIAFDEKGDLKDSAQTVYIAKGDKWEVAM
>NZ_CP019644.2|WP_158667249.1|2065586_2066837_-|D-amino-acid-dehydrogenase
MNIVVVGAGIAGVCTAWYLTKAGHQVTVVEALSEVAQETSFANAGMLTQGYAAPWAAPNVVKQSWKMLREPSKPLCIKPDGSLEQVKWLWKMYGYCNAEDFSRNRQHMYQLGKRNLQLLHQLKNELALDYAGRAQGTLEVFRASGDYQACVDDTDFLNQQGIAHVLLEPQNCNEFEPAIATDQFSGALRLNEDETGDCHLFAQQLKQYCEQFGVKFLFEHAVSAILNDGQSVTGVVAAGKTLLADHVVLTTGCQTKRLLQSIGLDAMIYPVKGYSITVPIKDESRAPQSTILDYQYKVAITRMGDHIRVGGIAEISGWDKIKISHNEETLKMVLNDLFPGSADLEETQFWMGMRPMTPDGPPLIGRMPLAGLSVNAGHGTFGWTFGLAAAKLLQESLSVDYTVQKQSPFYPSRYQA
>NZ_CP019644.2|WP_019957999.1|2066921_2067836_-|LysR-family-transcriptional-regulator
MNNKLYRKQVPSTHAMRCFEAAARHLSFTLAAEELNMTQSAVSKQVAMLEYTLKIQLFIRVRQRLQLAPPGQLYFQEVTRILALIEEASLEMLSYDDRADSIRIATHPSFGTNWLIPALQGFRERHQYIELTFQDYVDPSDLGAADIDVAFIHGEGHWENLKTIKLFDEVMVPVCSPDMLERYGSDGIEQLYLEQPLLQCRTRVDAWSEFFDCMDLEHPNGYRGPRFETWSSLMAAAEHDFGVGLVPEFLLQKYLKTGRLVKMSAHKLESAGAYYMAYPEHFAAEPKIMAIADWIQEHLYEKSA
>NZ_CP019644.2|WP_171461137.1|2068094_2068466_+|RcnB-family-protein
MKKLITTAIIASLMSMVAIPAMAAPQHSQSHSSHTKPHPSYSHKNNNQYQDQQKIVPKKTQAHQTWKRGQVLNKKYRGKAYWADSKEQRHLPKAGKNQRWVKVDQNYILINTLSNVILSVFLR
>NZ_CP019644.2|WP_104932126.1|2068538_2068964_-|hypothetical-protein
MKQILAAGVLMVATAFAQAQNYNNGEDLSRFVTSEAFGKMSAAELKPIQKKVQAHLDKCVAATVKHLQQDSKSHGVTAAMVQKHYQVWVPYYKTGCEIYAAEHEEEAQSRANLQMRCEVFSQSSFYSNLLAYQHKPLESCQ
>NZ_CP019644.2|WP_019957996.1|2068986_2069370_-|hypothetical-protein
MKASLLVVYLFHNEVKVLASDQKAWNLALAFAHPRSLVGNVPILEQGLRLLLQDYWHEQTYLQRYVGVQKIVWVLPPQIGGLSFLELRVLKELSHVLLGGRMYAYVIESEPLNYAYWQAKIPTLKRL
>NZ_CP019644.2|WP_019957995.1|2069457_2070114_+|class-I-SAM-dependent-methyltransferase
MATTPQLQAIEQQLACPQGEQGLDIADMMHATNINMTLNGWQCMRLAPNGRVLELGHGNAAHVTPLLKKRSDIHYTGLEISELMCEQAHLLNQEMVNHYRATFWHYDGQYIPSFIQAFDGILSVNTIYFWDQPQFLLLQLKQQLSALGRLALVYMDPEFLQTLPFVGHQFKPYAPNKLEALLTQTGFQNITTKSFHDEVTRKDQSVATRLFHVTTAQR
>NZ_CP019644.2|WP_019957994.1|2070170_2071916_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSTKDPRAKLPDAPLSDNERLKSQSHLLRGTIKEDLGDELTGGFNGDNFQLIRFHGMYEQDDRDIRAERVEQKLEPLKNVMLRCRLPGGIIQPQQWLGIDAFATEHTMYGSIRLTNRQTFQFHGVLKQDIKPMHQWLNQLGLDSIATAGDVNRNVLCTSNPVESSLHQEAYEWAKKISEHLLPRTHAYAEIWLDGEKFASSEDGVEREPILGETYLPRKFKTTVVVPPTNDIDVHANDLNFVAIAENGKLIGFNVLVGGGLSMEHGNTKTYPNTARDLGYVPLEYTLKAAEGVVSVQRDWGNRSDRKNAKTRYTLERVGVDVFREEVENRMGVKFEPTRPYEFTHRGDRIGWVEGEDKKWHLTLFIENGRLLDYPNKPLKTGMREIAKIHTGDFRLTANQNLIVAGVAKKDKAKIEKLAREHGLMADNISRQREASMACVSYPTCPLAMAEAERFLPDFTTAIEQLLSKHGVADEAIILRITGCPNGCGRAMLAEVGLVGKAQGRYNLHVGGNTAGTRIPRLYKENITPDEILLILDAWIGAWAKERLDGECFGDFAIRSGIVKPVVNAPVDFWDVSQVTV
>NZ_CP019644.2|WP_019957993.1|2071987_2073802_-|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit
MQTVLPLTPEWQQQLEQFSPTQLAWLSGYCWAKSQDSNAVAAATGVAPNAIATAVEATAAAPARKITVLSVSQTGNARRVAEQLLVQLQEAQLDAQIIAAGDYKAKNIASEDIVLMVTSTQGEGEAPEEGVSLHKFLHGKKAPQLNGVSFAVLGLGDSSYPNFCQAGKDFDAVLEKLGATRLAPRVDCDLDFQAAADAWRNDVAQTVVALAQQTSVSAAVASSAAVAVAVTEQHYTKENPFTATLSVSQKITANEANKDVRHIEIDLGDSGIQYTAGDALGVWFGNDEALVDEVLRLSVLEGSENVVLSNGESVSIREALLHQDELTQNTPQFIKGFAQISQNADLLALIEDNKALQAAVDCTPIVGILNDYPHPLTAEQLHGLLRPLTPRMYSIASAQAEVDGEVHLTVGRVAYEHHGNAYTGGASGFLSDRLQEGGDVKVFVEPNKNFRLPENGDTPIIMIGAGTGVAPFRAFMQQRDNNGDTGANWLVFGNQKFTDDFLYQAEWLQYRKSGLLTAVSTAWSRQGSEKVYVQHKLRENAAAVWQWLQQGAHVYVCGDALRMAKDVEQALLDIISEQGQMSLDDADEYLSQLREDKRYQRDVY
>NZ_CP019644.2|WP_104932129.1|2073881_2075192_-|50S-ribosome-binding-GTPase
MTTPVSVLRFITAGSVDDGKSTLIGRLLYDSQALLADQVAQLNKRSAGGTLDLASLTDGLEAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADAAIVLVDATRLDFEQSPLQLLSQTKRHSTLLKQIGCRHIIVAVNKLDLLDYSQEKFKQIVTAYRQLADTIGLKDVYYVPISALNGDNIVNSSEHMPWFEGAPLLTLLEGLPAAADEQISDMPEEAYLPVQRVARQDGSAADDFRGYQGRIEAGVFSVGQAVRVEPSARTSTISAIYGVQGEVARASRGDVVTITLTDDVDISRGDVLVASDSIVVPTKFLSATLSWLDERPLNTARKYWLKHGTQTVYAKVKAIDYVWDMQTLGQTTEANDLKMNDIGHVRLSLMKPIAALEYANNRAAGAFILIDDATNHTVAAGMIVATQDQDDWAI
>NZ_CP019644.2|WP_019957991.1|2075268_2076189_-|sulfate-adenylyltransferase-subunit-CysD
MSDAISNKHLDWLEAESIYIIREVIAESKNPALLFSGGKDSVVLLALACKAFTYGERALQLPFKLLHVDTGHNYQEVIDFRDQTVARLGVELVVGHVEDSIAKGTVVLRSELDSRNAAQAVTLLEAIEEHEFDALMGGARRDEEKARAKERIFSFRDEFGQWDPKAQRPELWSLYNTRLFKGENMRVFPISNWTEMDIWQYIEREGLALPPIYFAHEREVVEKNGLLVPVTRLTPKKDGDVSEIRSVRFRTVGDISCTCPVASTAANPVDIIAETAQTTISERSATRMDDQVSESAMEERKKAGYF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019644_2	2.1\|2065516\|25\|NZ_CP019644\|CRISPRCasFinder	2065516-2065540	25	NZ_CP014325	Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence	67399-67423	4	0.84
NZ_CP019644_1	1.10\|1387236\|31\|NZ_CP019644\|CRT	1387236-1387266	31	MH593834	Siphoviridae sp. isolate ctbe1, complete genome	44126-44156	7	0.774
NZ_CP019644_1	1.16\|1387237\|31\|NZ_CP019644\|PILER-CR	1387237-1387267	31	MH593834	Siphoviridae sp. isolate ctbe1, complete genome	44126-44156	7	0.774
NZ_CP019644_1	1.4\|1387235\|32\|NZ_CP019644\|CRISPRCasFinder	1387235-1387266	32	MH593834	Siphoviridae sp. isolate ctbe1, complete genome	44126-44157	8	0.75

1. spacer 2.1|2065516|25|NZ_CP019644|CRISPRCasFinder matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 4, identity: 0.84

aaatctaatacgcttatttaaaaca	CRISPR spacer
aaatcaaatacgcatatttaaaagt	Protospacer
***** ******* *********

2. spacer 1.10|1387236|31|NZ_CP019644|CRT matches to MH593834 (Siphoviridae sp. isolate ctbe1, complete genome) position: , mismatch: 7, identity: 0.774

cttggtttcgattgcgccaactccaatcacc	CRISPR spacer
tttggtttcgattgcaccaacttcaacgata	Protospacer
.**************.******.***. *.

3. spacer 1.16|1387237|31|NZ_CP019644|PILER-CR matches to MH593834 (Siphoviridae sp. isolate ctbe1, complete genome) position: , mismatch: 7, identity: 0.774

cttggtttcgattgcgccaactccaatcacc	CRISPR spacer
tttggtttcgattgcaccaacttcaacgata	Protospacer
.**************.******.***. *.

4. spacer 1.4|1387235|32|NZ_CP019644|CRISPRCasFinder matches to MH593834 (Siphoviridae sp. isolate ctbe1, complete genome) position: , mismatch: 8, identity: 0.75

ccttggtttcgattgcgccaactccaatcacc	CRISPR spacer
gtttggtttcgattgcaccaacttcaacgata	Protospacer
 .**************.******.***. *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

191360 : 244872

Mycobacterium_phage(29.41%)

tRNA,transposase,integrase

attL 199040:199099|attR 222275:223657

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104931213.1\|191360_192614_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3
WP_158667038.1\|192676_193264_-	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	7.3e-17	37.5
WP_171460814.1\|193677_195123_+	DEAD/DEAH box helicase	A0A0N9Q9J4	Chrysochromulina_ericina_virus	2.1e-41	29.6
WP_171460815.1\|195715_197767_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_158667040.1\|197912_198494_-	class I SAM-dependent methyltransferase	A0A2H4J5G6	uncultured_Caudovirales_phage	6.5e-10	40.7
WP_104931285.1\|198490_199030_-	hypothetical protein	NA	NA	NA	NA
199040:199099	attL	NA	NA	NA	NA
WP_104931213.1\|199068_200322_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3
WP_104931286.1\|200412_200901_-	hypothetical protein	NA	NA	NA	NA
WP_171460816.1\|202743_204534_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	5.2e-50	33.4
WP_171460817.1\|204530_205565_-	toprim domain-containing protein	A0A0H5AWB1	Pseudomonas_phage	1.2e-30	31.5
WP_104931290.1\|205613_205868_-	hypothetical protein	NA	NA	NA	NA
WP_019957489.1\|206079_206316_-	hypothetical protein	NA	NA	NA	NA
WP_171460818.1\|206782_207451_-	KilA-N domain-containing protein	K7PH30	Enterobacteria_phage	7.2e-21	44.3
WP_104931292.1\|207450_207750_-	transcriptional regulator	NA	NA	NA	NA
WP_169708861.1\|207752_207986_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_171460819.1\|208178_208883_-	hypothetical protein	NA	NA	NA	NA
WP_171460820.1\|209005_210091_-	ATP-binding protein	NA	NA	NA	NA
WP_171460821.1\|210172_211366_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	1.3e-65	37.8
WP_019957498.1\|212103_212598_+	DUF1841 family protein	NA	NA	NA	NA
WP_104931294.1\|212889_213291_-	hypothetical protein	NA	NA	NA	NA
WP_171460822.1\|213283_214597_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_104931295.1\|214715_215099_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_019957502.1\|215276_215939_+	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	A0A2I7SAW6	Vibrio_phage	1.1e-56	54.3
WP_104931296.1\|216051_217452_-	hypothetical protein	NA	NA	NA	NA
WP_104931297.1\|217465_218389_-	homoserine kinase	NA	NA	NA	NA
WP_019957505.1\|218595_219072_+	peptidoglycan-binding protein LysM	A0A0K2SUI2	Clostridium_phage	2.1e-06	53.1
WP_019957506.1\|219327_219591_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_019957507.1\|219674_220790_+	phospholipase A	NA	NA	NA	NA
WP_104931213.1\|221051_222305_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3
WP_019957540.1\|222352_223372_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_171460823.1\|223386_224295_+	ABC transporter permease subunit	NA	NA	NA	NA
222275:223657	attR	NA	NA	NA	NA
WP_019957538.1\|224294_225296_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-16	29.2
WP_019957537.1\|225292_226270_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-19	30.3
WP_104931298.1\|226368_227292_-	hypothetical protein	NA	NA	NA	NA
WP_104931299.1\|227383_228706_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_081619538.1\|229074_229443_-	OmpA family protein	NA	NA	NA	NA
WP_104931300.1\|229862_230768_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_019957532.1\|230843_232907_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_171460824.1\|232986_234786_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_104931213.1\|235010_236264_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3
WP_026353416.1\|236360_237233_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_019957529.1\|237240_237657_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_019957528.1\|237653_238073_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_026353415.1\|238165_238477_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_104931301.1\|238502_238865_-	DUF202 domain-containing protein	NA	NA	NA	NA
WP_019957525.1\|239042_239972_+	YihY/virulence factor BrkB family protein	H9YQA7	environmental_Halophage	3.1e-06	32.3
WP_171460825.1\|240136_242629_+	AI-2E family transporter	NA	NA	NA	NA
WP_019957523.1\|242744_243401_+	hypothetical protein	NA	NA	NA	NA
WP_104931213.1\|243618_244872_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3

DBSCAN-SWA_2

273921 : 283461

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104931315.1\|273921_275001_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2P1ELT3	Moumouvirus	5.6e-31	29.3
WP_019958314.1\|275020_275614_-	N-acetyltransferase	NA	NA	NA	NA
WP_019958315.1\|275601_276654_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_019958316.1\|276657_277707_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_019958317.1\|277721_279023_-	nucleotide sugar dehydrogenase	M1I178	Paramecium_bursaria_Chlorella_virus	1.6e-35	30.6
WP_019958318.1\|279048_279912_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.4e-31	36.9
WP_019958319.1\|279899_280454_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	1.3e-36	42.4
WP_019958320.1\|280450_281323_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	4.9e-78	50.2
WP_104931316.1\|281338_282346_-	dTDP-glucose 4,6-dehydratase	A0A1D8EQC0	Escherichia_phage	1.0e-66	41.6
WP_104931317.1\|282342_283461_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.9e-51	39.1

DBSCAN-SWA_3

325858 : 333541

Methanothermobacter_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104931335.1\|325858_327052_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	6.2e-47	35.2
WP_104931336.1\|327054_327423_-	general secretion pathway protein GspG	NA	NA	NA	NA
WP_040755949.1\|327542_327983_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_104931337.1\|327987_328827_-	hypothetical protein	B6S2F0	Adoxophyes_orana_nucleopolyhedrovirus	7.7e-12	29.6
WP_019959305.1\|328955_329843_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	7.4e-21	25.5
WP_158667050.1\|329820_330294_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2P1EL10	Moumouvirus	3.1e-18	32.9
WP_026353684.1\|330383_330905_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_019959302.1\|330888_331485_+	hypothetical protein	NA	NA	NA	NA
WP_026353683.1\|331545_332004_-	CZB domain-containing protein	NA	NA	NA	NA
WP_019959300.1\|332783_332987_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.0e-23	80.3
WP_104931340.1\|333217_333541_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.0e-12	45.7

DBSCAN-SWA_4

1422602 : 1431138

Klosneuvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019957691.1\|1422602_1423175_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.9e-33	47.2
WP_019957690.1\|1423364_1423976_+	guanylate kinase	A0A240FAU9	Liberibacter_phage	2.0e-17	28.9
WP_019957689.1\|1423989_1424196_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_019957688.1\|1424206_1426369_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1V0SJX2	Klosneuvirus	2.8e-05	38.5
WP_019957687.1\|1426601_1426814_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_019957686.1\|1426884_1427331_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	9.7e-22	45.9
WP_019957685.1\|1427327_1429106_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	9.4e-68	35.6
WP_171461034.1\|1429182_1431138_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.3e-29	31.7

DBSCAN-SWA_5

2349489 : 2382335

Klosneuvirus(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104931415.1\|2349489_2350332_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_104931416.1\|2350307_2350622_-\|transposase	transposase	NA	NA	NA	NA
WP_019958560.1\|2350891_2351602_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_019958559.1\|2351743_2353006_-	NYN domain-containing protein	NA	NA	NA	NA
WP_104932213.1\|2353388_2354315_+	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	1.6e-58	42.6
WP_104932214.1\|2354311_2354770_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_040755808.1\|2354830_2355511_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_104932215.1\|2355563_2356196_-	nitroreductase family protein	NA	NA	NA	NA
WP_051083019.1\|2356239_2356650_+	hypothetical protein	NA	NA	NA	NA
WP_104932217.1\|2356724_2357723_+	adenosine deaminase	NA	NA	NA	NA
WP_171461165.1\|2357765_2358089_-	YnfA family protein	A0A218MNG8	uncultured_virus	4.5e-21	53.9
WP_019958550.1\|2358096_2358621_-	hypothetical protein	NA	NA	NA	NA
WP_019958549.1\|2358787_2359021_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_019958548.1\|2359017_2359194_+	hypothetical protein	NA	NA	NA	NA
WP_104932222.1\|2359183_2360020_+	PHP domain-containing protein	NA	NA	NA	NA
WP_171461166.1\|2360420_2361041_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_171461167.1\|2361055_2361715_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_104932223.1\|2361782_2362337_-	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_019958543.1\|2362401_2364234_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.7e-72	33.8
WP_171461168.1\|2364342_2364780_+	hypothetical protein	NA	NA	NA	NA
WP_019958541.1\|2364800_2365121_+	hypothetical protein	NA	NA	NA	NA
WP_019958540.1\|2365131_2365497_+	hypothetical protein	NA	NA	NA	NA
WP_104932227.1\|2365483_2366125_+	YdcF family protein	NA	NA	NA	NA
WP_104932228.1\|2366158_2366587_+	CopD family protein	NA	NA	NA	NA
WP_171461169.1\|2366595_2367057_+	CYTH domain-containing protein	NA	NA	NA	NA
WP_171461170.1\|2367088_2368363_+	glutamate-1-semialdehyde 2,1-aminomutase	A0A1V0SKB7	Klosneuvirus	2.6e-11	25.4
WP_171461221.1\|2368609_2369986_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_019958534.1\|2370135_2370675_+	ATP/GTP-binding protein	NA	NA	NA	NA
WP_104932229.1\|2370786_2372133_-	MltA domain-containing protein	NA	NA	NA	NA
WP_104932230.1\|2372187_2373636_-	capsule assembly Wzi family protein	NA	NA	NA	NA
WP_171461222.1\|2373785_2376350_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.3e-25	25.2
WP_158667275.1\|2376401_2376815_+	VOC family protein	NA	NA	NA	NA
WP_019958529.1\|2376920_2377460_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_104932232.1\|2377512_2377974_+	hypothetical protein	NA	NA	NA	NA
WP_019958527.1\|2378019_2379351_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	4.6e-43	28.8
WP_019958526.1\|2379434_2380172_+	DUF4870 domain-containing protein	NA	NA	NA	NA
WP_104931213.1\|2381081_2382335_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3

DBSCAN-SWA_6

2434570 : 2472474

uncultured_Caudovirales_phage(19.05%)

protease,integrase,head,portal,terminase,transposase,tail,capsid

attL 2433255:2433272|attR 2462550:2462567

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2433255:2433272	attL	NA	NA	NA	NA
WP_104931213.1\|2434570_2435824_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3
WP_104932251.1\|2436217_2436643_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_019959348.1\|2436730_2437486_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	9.1e-12	35.4
WP_104932425.1\|2437891_2440120_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_019959346.1\|2440193_2440874_+	Fe2+-dependent dioxygenase	A0A127KM56	Cyanophage	2.9e-17	32.2
WP_104932252.1\|2440870_2441998_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_104932253.1\|2442071_2442560_+	GAF domain-containing protein	NA	NA	NA	NA
WP_104932254.1\|2442922_2444209_+\|integrase	integrase	NA	NA	NA	NA
WP_104932255.1\|2444197_2444395_-	hypothetical protein	NA	NA	NA	NA
WP_104932256.1\|2444406_2444862_-	hypothetical protein	NA	NA	NA	NA
WP_158667277.1\|2444988_2445402_-	hypothetical protein	NA	NA	NA	NA
WP_104932257.1\|2445413_2446304_-	hypothetical protein	NA	NA	NA	NA
WP_104932258.1\|2446368_2446716_-	hypothetical protein	NA	NA	NA	NA
WP_104932259.1\|2446838_2447258_-	hypothetical protein	NA	NA	NA	NA
WP_171461175.1\|2447264_2447843_-	hypothetical protein	NA	NA	NA	NA
WP_104932261.1\|2447800_2448019_-	hypothetical protein	NA	NA	NA	NA
WP_104932262.1\|2448124_2448307_-	hypothetical protein	NA	NA	NA	NA
WP_171461176.1\|2448293_2448530_-	hypothetical protein	NA	NA	NA	NA
WP_104932264.1\|2448573_2448759_-	hypothetical protein	NA	NA	NA	NA
WP_104932426.1\|2449341_2450892_-	SIR2 family protein	Q38324	Lactococcus_phage	8.0e-31	27.2
WP_171461224.1\|2451769_2452594_-	hypothetical protein	M9NYX6	Enterobacteria_phage	2.3e-69	48.7
WP_158667279.1\|2452672_2453347_-	XRE family transcriptional regulator	A0A2H4J8I0	uncultured_Caudovirales_phage	1.2e-26	45.4
WP_104932267.1\|2453474_2453723_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_104932268.1\|2453886_2454114_+	hypothetical protein	A0A088FAW9	Sulfitobacter_phage	4.5e-07	43.8
WP_104932269.1\|2454117_2455287_+	helix-turn-helix domain-containing protein	R9TH17	Synechococcus_phage	3.3e-05	43.3
WP_171461177.1\|2455288_2455831_+	adenylosuccinate synthase	A0A2H4JDN1	uncultured_Caudovirales_phage	3.2e-43	53.8
WP_104932271.1\|2455842_2456064_+	hypothetical protein	NA	NA	NA	NA
WP_104932272.1\|2456063_2456381_+	hypothetical protein	NA	NA	NA	NA
WP_104932273.1\|2456456_2457050_+	tape measure protein	A0A1W6DXW2	Salmonella_phage	6.0e-11	47.6
WP_171461178.1\|2457046_2457868_+	hypothetical protein	A0A1X9SFI6	Acinetobacter_phage	2.2e-27	41.3
WP_104932276.1\|2457958_2458393_+	hypothetical protein	NA	NA	NA	NA
WP_104932277.1\|2458402_2458867_+	hypothetical protein	NA	NA	NA	NA
WP_104932278.1\|2459182_2459479_+	hypothetical protein	NA	NA	NA	NA
WP_171461225.1\|2459492_2459825_+	HNH endonuclease	C4ML58	Xanthomonas_virus	4.4e-19	50.5
WP_171461179.1\|2460030_2460540_+\|terminase	terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	1.3e-09	35.4
WP_171461180.1\|2460560_2462243_+\|terminase	terminase large subunit	A0A2H4J6B3	uncultured_Caudovirales_phage	4.3e-171	54.1
WP_171461181.1\|2462248_2463484_+\|portal	phage portal protein	Q3HQS8	Burkholderia_phage	4.3e-120	56.0
2462550:2462567	attR	NA	NA	NA	NA
WP_104932281.1\|2463480_2464329_+\|protease	Clp protease ClpP	Q3HQS9	Burkholderia_phage	3.1e-77	52.8
WP_171461226.1\|2464416_2465634_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	2.6e-117	55.0
WP_104932283.1\|2465700_2465925_+	hypothetical protein	Q3HQT1	Burkholderia_phage	1.1e-05	50.0
WP_104932284.1\|2465924_2466248_+\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	9.2e-06	31.2
WP_158667281.1\|2466249_2466579_+\|head	phage head closure protein	Q8W6U2	Burkholderia_virus	6.1e-13	40.8
WP_104932286.1\|2466568_2467030_+	hypothetical protein	NA	NA	NA	NA
WP_104932287.1\|2467029_2467404_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_104932288.1\|2467474_2468110_+	hypothetical protein	NA	NA	NA	NA
WP_171461182.1\|2468183_2468663_+	hypothetical protein	NA	NA	NA	NA
WP_171461183.1\|2468692_2468986_+	hypothetical protein	NA	NA	NA	NA
WP_171461184.1\|2468991_2472474_+	tape measure protein	A0A1C6ZDP8	Pseudomonas_phage	2.1e-47	44.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019644

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection