CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021490	Francisella tularensis subsp. novicida strain TCH2015 chromosome, complete genome	2 crisprs	cas12a,cas4,cas1,cas2,csa3,DEDDh,RT,cas9,cas3	0	11	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021490_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021490_1

649988-650733

TypeV-A,TypeI-A

V-A

Consensus_repeat	Method
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	PILER-CR
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	CRISPRCasFinder
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	CRT

11 spacers

cas2,cas1,cas4,cas12a,csa3

The CRISPR arrays of NZ_CP021490_1

>merge|NZ_CP021490|1|649988-650733|PILER-CR,CRISPRCasFinder,CRT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATAAGATGATAGTAAGGCACAGTATTTCAGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATTTATATACGCATTGCTTTAATACATGGTAGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATTGTTCTATAATAAAACTTTTAATCTTTTATGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATTTAATTCTATAGGTAAAAATGAGTTCTTGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATGCGGTGTAAGGTTCGTCAAGCTTATCGGGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATGGCGCTAGTAAGTGGGAGCTACACTACTAGGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATCAAAGTGATTATTGTTCAATGAATGTTGAGGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATAAGGCTATATTCGTACAACAGAATTAACATGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATTAGCACCTGTTTAACGAACTCTAAATCGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATAAAACCTTGCAAAATCAGAGCTTGAGAGTCTAAGAACTTTAAATAATTTCTACTGTTGTAGATATGAAATACTCTTGTCCTTTGGGTGTGAGTCTAAGAACTTTAAATAATTTGTCTGTATATTATT

>NZ_CP021490|1|1|649988-650543|PILER-CR
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	AAGATGATAGTAAGGCACAGTATTTCA
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TTATATACGCATTGCTTTAATACATGGTA
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TGTTCTATAATAAAACTTTTAATCTTTTAT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TTAATTCTATAGGTAAAAATGAGTTCTT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	GCGGTGTAAGGTTCGTCAAGCTTATCGG
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	GGCGCTAGTAAGTGGGAGCTACACTACTAG
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	CAAAGTGATTATTGTTCAATGAATGTTGAG
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	AAGGCTATATTCGTACAACAGAATTAACAT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT

>NZ_CP021490|1|1|649988-650733|CRISPRCasFinder
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	AAGATGATAGTAAGGCACAGTATTTCA
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TTATATACGCATTGCTTTAATACATGGTA
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TGTTCTATAATAAAACTTTTAATCTTTTAT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TTAATTCTATAGGTAAAAATGAGTTCTT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	GCGGTGTAAGGTTCGTCAAGCTTATCGG
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	GGCGCTAGTAAGTGGGAGCTACACTACTAG
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	CAAAGTGATTATTGTTCAATGAATGTTGAG
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	AAGGCTATATTCGTACAACAGAATTAACAT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TAGCACCTGTTTAACGAACTCTAAATC
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	AAAACCTTGCAAAATCAGAGCTTGAGA
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	ATGAAATACTCTTGTCCTTTGGGTGTGA
GTCTAAGAACTTTAAATAATTTGTCTGTATATTATT

>NZ_CP021490|1|1|649988-650733|CRT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	AAGATGATAGTAAGGCACAGTATTTCA
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TTATATACGCATTGCTTTAATACATGGTA
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TGTTCTATAATAAAACTTTTAATCTTTTAT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TTAATTCTATAGGTAAAAATGAGTTCTT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	GCGGTGTAAGGTTCGTCAAGCTTATCGG
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	GGCGCTAGTAAGTGGGAGCTACACTACTAG
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	CAAAGTGATTATTGTTCAATGAATGTTGAG
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	AAGGCTATATTCGTACAACAGAATTAACAT
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	TAGCACCTGTTTAACGAACTCTAAATC
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	AAAACCTTGCAAAATCAGAGCTTGAGA
GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	ATGAAATACTCTTGTCCTTTGGGTGTGA
GTCTAAGAACTTTAAATAATTTGTCTGTATATTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021490.1\|WP_104928540.1\|644022_647925_+\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	cas12a	cas12a_cpf1_CAS-V-A	gnl\|CDD\|275131
NZ_CP021490.1\|WP_173677747.1\|656195_656708_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021490.1\|WP_011733704.1\|650792_651095_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP021490.1\|WP_173677789.1\|651699_653391_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
NZ_CP021490.1\|WP_104928537.1\|639272_640217_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP021490.1\|WP_003025320.1\|657312_657738_+\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|273891
NZ_CP021490.1\|WP_003037272.1\|641294_641930_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP021490.1\|WP_003025316.1\|656724_657126_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021490.1\|WP_003022238.1\|655525_655972_-\|YcgN-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|235356
NZ_CP021490.1\|WP_014550092.1\|649575_649848_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP021490.1\|WP_004339298.1\|654123_654873_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP021490.1\|WP_014550096.1\|643419_643935_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP021490.1\|WP_104928539.1\|642698_643415_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021490.1\|WP_104928541.1\|648590_649595_+\|type-V-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|213942
NZ_CP021490.1\|WP_003015040.1\|653435_654122_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP021490.1\|WP_003022248.1\|651156_651675_+\|DUF2892-domain-containing-protein	unknown	unknown	gnl\|CDD\|223680
NZ_CP021490.1\|WP_104929224.1\|648050_648587_+\|type-V-CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|213941
NZ_CP021490.1\|WP_003025312.1\|654865_655474_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP021490.1\|WP_104928538.1\|641999_642689_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP021490.1\|WP_003034660.1\|640407_641298_+\|NAD(+)/NADH-kinase	unknown	unknown	gnl\|CDD\|179257

Protein	Function_ID	Function_description	E-value
NZ_CP021490.1\|WP_104928540.1\|644022_647925_+\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	gnl\|CDD\|275131	TIGR04330, conserved_hypothetical_protein, CRISPR-associated protein Cpf1, subtype PREFRAN. This family is the long protein of a novel CRISPR subtype, PREFRAN, which is most common in Prevotella and Francisella, although widely distributed. The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the helicase Cas3 and endonuclease Cas3-HD.	0
NZ_CP021490.1\|WP_011733704.1\|650792_651095_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.14653e-19
NZ_CP021490.1\|WP_173677789.1\|651699_653391_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	7.18143e-139
NZ_CP021490.1\|WP_104928537.1\|639272_640217_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	5.03854e-82
NZ_CP021490.1\|WP_003025320.1\|657312_657738_+\|transcription-antitermination-factor-NusB	gnl\|CDD\|273891	TIGR01951, nusB, transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. [Transcription, Transcription factors].	1.1964e-38
NZ_CP021490.1\|WP_003037272.1\|641294_641930_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.20722e-20
NZ_CP021490.1\|WP_003022238.1\|655525_655972_-\|YcgN-family-cysteine-cluster-protein	gnl\|CDD\|235356	PRK05170, PRK05170, YcgN family cysteine cluster protein.	6.61276e-69
NZ_CP021490.1\|WP_014550092.1\|649575_649848_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	4.95236e-13
NZ_CP021490.1\|WP_004339298.1\|654123_654873_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	3.67358e-31
NZ_CP021490.1\|WP_014550096.1\|643419_643935_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.21362e-39
NZ_CP021490.1\|WP_104928541.1\|648590_649595_+\|type-V-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|213942	TIGR04329, hypothetical_protein_SbacW_07302_partial, CRISPR-associated endonuclease Cas1, subtype PREFRAN. Members of this family are the Cas1 endonuclease of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	0
NZ_CP021490.1\|WP_003015040.1\|653435_654122_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.1463e-85
NZ_CP021490.1\|WP_003034660.1\|640407_641298_+\|NAD(+)/NADH-kinase	gnl\|CDD\|179257	PRK01231, ppnK, NAD(+) kinase.	4.0724e-91
NZ_CP021490.1\|WP_104929224.1\|648050_648587_+\|type-V-CRISPR-associated-protein-Cas4	gnl\|CDD\|213941	TIGR04328, hypothetical_protein_HMPREF9709_01098, CRISPR-associated protein Cas4, subtype PREFRAN. Members of this family are the Cas4 protein of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	2.58113e-101
NZ_CP021490.1\|WP_003025312.1\|654865_655474_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	3.96628e-24
NZ_CP021490.1\|WP_104928538.1\|641999_642689_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.03582e-87
NZ_CP021490.1\|WP_003022248.1\|651156_651675_+\|DUF2892-domain-containing-protein	gnl\|CDD\|223680	COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	3.87907e-19

>NZ_CP021490.1|WP_014550092.1|649575_649848_+|CRISPR-associated-endonuclease-Cas2
MLIVSYDFSNNKVRAKFAKFLESYGVRLQYSVFELKYSKRMLDLILAEIENHYVPLFTNADSVLIFNAPDKDVIKYGYAIHREQEVVFID
>NZ_CP021490.1|WP_104928541.1|648590_649595_+|type-V-CRISPR-associated-endonuclease-Cas1
MFSKNDIESKNIVFVNIFDGVKLSLSLGNIVIKDKETDEVKTKLSVHKVLALFIVGNMTMTSQLLETCKKNAIQLVFMKNSFRPYLCFGDIAEANFLARYKQYSVVEQDISLARIFITSKIRNQHNLVKSLRDKTPEQQVIVKKNKQLIAELENTTSLAELMGIEGNVAKNFFKGFYGHLDSWQGRKPRIKQDPYNVVLDLGYSMLFNFVECFLRLFGFDLYKGFCHQTWYKRKSLVCDFVEPFRCIVDNQVRKSWNLGQFSVEDFGCKNEQFYIKKDKTKDYSKILFAEIISYKLEIFEYVREFYRAFMRGKEIAEYPIFCYETRRVYVDSQL
>NZ_CP021490.1|WP_104929224.1|648050_648587_+|type-V-CRISPR-associated-protein-Cas4
MTWLNDFIFCPYSIYLHNIYSNASDTTYYSSSQTKGRDAHKSIDKGIYSNKKDDLIGIDVINHKYGLVGKIDVFHKDKGLLVERKRQIKTIYDGYKYQLYAQYFCLQEMGYDVKAIKFYSMVDNKSYPIAIPTSAELEKFEKHIQTIKQYNPMDNSFRQNIEKCKFCIYANLCDKTDL
>NZ_CP021490.1|WP_104928540.1|644022_647925_+|type-V-CRISPR-associated-protein-Cas12a/Cpf1
MSIYQEFVNKYSLSKTLRFELIPQGKTLENIKARGLILDDEKRAKDYKKAKQIIDKYHQFFIEEILSSVCISEDLLQNYSDVYFKLKKSDDDNLQKDFKSAKDTIKKQISKYINDSEKFKNLFNQNLIDAKKGQESDLILWLKQSKDNGIELFKANSDITDIDEALEIIKSFKGWTTYFKGFHENRKNVYSSNDIPTSIIYRIVDDNLPKFLENKAKYESLKDKAPEAINYEQIKKDLAEELTFDIDYKTSEVNQRVFSLDEVFEIANFNNYLNQSGITKFNTIIGGKFVNGENTKRKGINEYINLYSQQINDKTLKKYKMSVLFKQILSDTESKSFVIDKLEDDSDVVTTMQSFYEQIAAFKTVEEKSIKETLSLLFDDLKAQKLDLSKIYFKNDKSLTDLSQQVFDDYSVISTAVLEYITQQVAPKNLDNPSKKEQELIAKKTEKAKYLSLETIKLALEEFNKHRDIDKQCRFEEILANFAAIPMIFDEIAQNKDNLAQISIKYQNQGKKDLLQASAEDDVKAIKDLLDQTNNLLHRLKIFHISQSEDKANILDKDEHFYLVFEECYFELANIVPLYNKIRNYITQKPYSDEKFKLNFENSTLANGWDKNKEPDNTAILFIKDDKYYLGVMNKKNNKIFDDKAIKENKGEGYKKIVYKLLPGANKMLPKVFFSAKSIKFYNPSEDILRIRNHSTHTKNGSPQKGYEKFEFNIEDCRKFIDFYKQSISKHPEWKDFGFRFSDTQRYNSIDEFYREVENQGYKLTFENISESYIDSVVNQGKLYLFQIYNKDFSAYSKGRPNLHTLYWKALFDERNLQDVVYKLNGEAELFYRKQSIPKKITHPAKETIANKNKDNPKKESVFEYDLIKDKRFTEDKFFFHCPITINFKSSGANKFNDEINLLLKEKANDVHILSIDRGERHLAYYTLVDGKGNIIKQDTFNIIGNDRMKTNYHDKLAAIEKDRDSARKDWKKINNIKEMKEGYLSQVVHEIAKLVIEHNAIVVFEDLNFGFKRGRFKVEKQVYQKLEKMLIEKLNYLVFKDNEFDKTGGVLRAYQLTAPFETFKKMGKQTGIIYYVPAGFTSKICPVTGFVNQLYPKYESVSKSQEFFSKFDKICYNLDKGYFEFSFDYKNFGDKAAKGKWTIASFGSRLINFRNSDKNHNWDTREVYPTKELEKLLKDYSIEYGHGECIKAAICGESDKKFFAKLTSVLNTILQMRNSKTGTELDYLISPVADVNGNFFDSRQAPKNMPQDADANGAYHIGLKGLMLLDRIKNNQEGKKLNLVIKNEEYFEFVQNRNN
>NZ_CP021490.1|WP_014550096.1|643419_643935_+|N-acetyltransferase
MHVKIRYEKLKDQELIYKLISEAFDTGDEEKLVRLLHTDHQSLISLVAETDDSSIIGQAIISKMTAEKDQTLKIYALAPMSVAPKYQHQGIGSKLIEAMIKEAKKNNIDAIFVLGHPSYYPKFGFKPATEYQIKCEYDVPADVFMVLDLSAKLASLKGQTVYYAEEFGKIF
>NZ_CP021490.1|WP_104928539.1|642698_643415_+|hypothetical-protein
MKIARYKKGFIKASEYNSKLHFDNIFCPDCGKAKVKIVRKADQEPYFVFVQDQQHDELCPRVAKPIQDQKIKELILSDSKKDMSKLNYLVNKNLEKCINLVTKLENNGELKKADELNLMPQKKQQITEKRIREYAKQDIYTINIVDLSDVNTQQLNNKYCLIYGVAGITLADVGDSKKLFFKADQDSRFSLFVVPSQIKYLDFDKGKRAKFAVFGRFKKVGKFINLEIRSTRDLVIRD
>NZ_CP021490.1|WP_104928538.1|641999_642689_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MCDKSKENLRQIKSYVQRAGRVTKKQQQALDNYAAKYLIEYAKDRKLDFTEIFANTNDVVLEIGFGMGGSLVEMALTNPAKNYLGIEVHKAGVGNILYEIEHQNITNLVVMSHDAVEILENMIADQSLASIQVYFPDPWHKKKHNKRRLVNQTNIDLFAKKLKVGGVFHYASDWLPYAEEVLELLENDSKYRNLYSGFAPRPEWRPLTKFEKRGQNLDHPISDILFEKI
>NZ_CP021490.1|WP_003037272.1|641294_641930_-|LysE-family-translocator
MLIFLTILALQISCLILPGPDFFVTISNSIKFGHKSGIYTASGVASGIFLNTFIVYWFGSLLLYKQPLLFKMLILIGAAYLAYIAFSLYKSIFTIQQLNPNANQHIKNLDNFDKPSNTKLFLNGAFTNLANAKVLVFFSSMLSLVDELNSFGKVAIWIAIALTTLVWFCIVATFFGNDKLRQVFFRNIKKIEFISAIFITIFVIVILVELF
>NZ_CP021490.1|WP_003034660.1|640407_641298_+|NAD(+)/NADH-kinase
MAFKYHKVAIIGKHYKKEVSQMVETLYAYLQQQGLEIIIENDTAADTSLVNIATASLKEIALRCDVAIVVGGDGNFLKASRLLALYSNIPVIGINKGKLGFLTTLAADDNALKNDLYAILKGDSSVTKMSMLKCRVDNNLRAPLEASIALNEIAITASRGLMFGLKVFIDGRYAFDQRGDGLIVSTPTGSTAHAMSAGGPILNPNQNSVVLVPICSHSLNSRPLVISDESVIDIYITDYNDPEPVLSIDGRHDTILKAHQKVTIQKARKKVTVLHTKDYNYYDTLREKLGWSKVLF
>NZ_CP021490.1|WP_104928537.1|639272_640217_-|glycosyltransferase-family-2-protein
MDNKDKLTSIIIPVKDEAEGIEHLFARLMPILEKLPTKYELVFINDGSNDNTLELLLEKQKDIPEIAIVDLSRNFGKEAALFAGFANCNGDAAISIDADLQDPPELILEMVQHWLDGYEVVTAVRENRDTDTSTKKHTAGLFYKVMNKISDTKLTPNAGDYRLLNRAAVNAFLELKEKIRFNKGLLTWIGFKEKIVYHAREERAAGQTKWNYWKLFKFSIDGITSFSRAPLEIWSYIGVVIALISFIYGSIIVLKSLLFGVDVPGYPSLVTFILFFSGLQMIGIGMLGSYIGRIFIETKHRPLYIIRQVHRAKE
>NZ_CP021490.1|WP_011733704.1|650792_651095_+|helix-turn-helix-transcriptional-regulator
MDLMQMKDNASKASSLLKAISHESRLLILCLLLRREMTVGELAEYSSLSQSAFSQHLSVLRNNGLVKCRKEAQNVYYSINDPSVTKILEALYSIYCGDKN
>NZ_CP021490.1|WP_003022248.1|651156_651675_+|DUF2892-domain-containing-protein
MNKVEKISVKQFLDLQKKEKVKLIDIRTPAEHSRECIDCAENILVDDIYDADIKPDEVVVLHCQSGNRTNQAASKVSGLNAKKVYLLDGGINAWKQHKQPTQKNVKEPLPIMRQVQIIVGFLVLLGVVLSFTVSQYFAILSGFFGAGLLFAGLTGTCGLAVMLEFLPYNRKK
>NZ_CP021490.1|WP_173677789.1|651699_653391_+|FAD-dependent-oxidoreductase
MTKKYLIVGGVAAGASAAARLRRLDESAEIIMFEKGPHVSFSNCGLPYHLGGYIEPAEKLILMTPEKFDKQYNIDARTNSEVIAIDRINKLVTVINHHSGDKYSESYDKLILAVGAKPIVPPFKGLETIEHFILRNVVDVKKIHQAVFDKQKPVKDITVIGAGFIGVEVAENLKERGFNVTIIEMANQIMRPFDYEMAKFLEKELLDNGVNLLLGEKVVGFESDKVLLESGKEIKTDLAILAIGVAPDTNFLKEVGIDLAKTGHILVNDNYQTSDENIYAAGDAILVKNALTAQDFNLPLAGPANKQGRLIADHINGHKVVNKGYIGSSIIQIFNYTGAATGLNEAWIKFHNLDIDYEVAYTAPFDRVSIMPNAVNVFTKILFEKNTGKLLGAQVIGRGIVDKRADVFATAIKAGMTVEDLQDLELCYAPPYSTGKDIVNHTGYVANNLLKGDFKQVAFTKVEELLAQNAQIIDVREIGKTRRGMLTNAKNIPLSEIRTRLAEIDKNQPVYVHCQTGQRSYNVVLMLQQHGYDAYNIAGGYIMISHYYDTIAHMTGKKISFTR
>NZ_CP021490.1|WP_003015040.1|653435_654122_+|MBL-fold-metallo-hydrolase
MIFRQLIDRDTYTYTYILACEQTRQAVIIDSVRFNVNQYLKLLKELDLKLIYAIDTHVHADHVTAAGILRKETGCDIVIGGESKAECATKKVFDGDILEFGNYQLKALYTPGHTDDSYCFITENMLFTGDTLLIRGSGRTDFQNGDSYAAYDSIMNKLMTLPGSTIIYPGHDYNGITSSSVAEERQNNPRLKVKSPDEYAKLMADLKLPPPNYIDIAVPANLKCGIEE
>NZ_CP021490.1|WP_004339298.1|654123_654873_+|sulfite-exporter-TauE/SafE-family-protein
MFLIIFGFICGIALGLTGGGGSILAVPLLTYGVGLEFHSAVMISLLVVGFTAIFGLIVNYKQRDIDYIAAVIMIITGVIFAPIGSYISQGLSDKLLMLSFSILMILIGVWSLVKVKLMSGSEKSIYKNITPRFIVALLISGGIVGTLTGFFGVGGGFLIVPALVFITAMPIRRAINTSLLVIFVVSISGFISHYDKTSMNWYIASMFIVGGAIGMFLATRVKKSLNDKVLQTIFAIMLVILGVVIYLIN
>NZ_CP021490.1|WP_003025312.1|654865_655474_-|2OG-Fe(II)-oxygenase
MSDLIAINPFYEKIINDYLNKDFCIIDNWLTTDETDKLRQQLEELYQANYFKKSAVGNRLNENLERSIRSDFIFWLDETKYAQVFFEKINSFIEYINKTCFAGIVTKEFHYAVYPQGSFYKKHIDTFQNDDRRTISVVCYLNQDWQDCFGGQLKLYLKDQTLEIFPTDGKIVLFDSKSIEHEVLPVLTENKRLSITGWLKTN
>NZ_CP021490.1|WP_003022238.1|655525_655972_-|YcgN-family-cysteine-cluster-protein
MSKWWQQIDLKDMSSEQWESICDRCGLCCLNKLQDDETDEVYYTRVSCKLLDIGKCQCSMYQKRKQLVPECVNLTYKQLKNHAHKWLPNSCSYKLLFEGKDLPDWHHLNTGSTEEMHKQKKSAKHFAISEYELDVDEYLEDFIIKIDN
>NZ_CP021490.1|WP_173677747.1|656195_656708_-|hypothetical-protein
MLKKINYLVYFIVLVLSGCASSGPQQPNLTPLQIQLMQTKVFNVDLRTAFDATVTVMQNLGYIIQDANFDTGIITAKSTQTANFWGDSEYTEATAFIQPYRQSNKNSSIRINFVVYNSMPNPNQGGTPINTSSAILDPQAYENAFAKIQQQIFVQTGISPVLTQPIQQVS
>NZ_CP021490.1|WP_003025316.1|656724_657126_-|hypothetical-protein
MKFNIICMLGLAFILSSCVSNTNPENVGFVKTPYTSGNVSLTLKKGVTTKDQVINAFGSPNIVTQNADGESVWTYQTNATVENNAARDGFLTLLITGENTEESGFMQSQKTMTIIITFKGNVVSDYKSLSTNF
>NZ_CP021490.1|WP_003025320.1|657312_657738_+|transcription-antitermination-factor-NusB
MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKTNQDTIDKYIKENSSNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE

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Crispr_ID: NZ_CP021490_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021490_2

1368840-1369803

TypeII

Consensus_repeat	Method
AATTATTTGGTAAACTACTGTTAG	CRT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	PILER-CR
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	CRISPRCasFinder

13 spacers

cas4,cas9

The CRISPR arrays of NZ_CP021490_2

>merge|NZ_CP021490|2|1368840-1369803|CRT,PILER-CR,CRISPRCasFinder
TATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAAGTTTCAGTCGCTAAATTATTTGGTAAACTACTGTTAGATCATGGGACATATGGCGGTAGCACAGTCAATAGGTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAGTCAATGCTGTACTAGAAACTACATACAAACTATAGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGTATTTGAAGACCAAACAAGATTTAAGGTTGTTGTTTGGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGTATAGAAAAGTTAAGACCAACCATATCTGATACACGGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGAGAGAGCGATTATGGCGAGAATTTTTACTTTTATTCGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGTGGTTCTACTGGTGGCGGTGGCACTGTCTCTTCGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGAACTATAAACTTGATTACTTATCAACAGTATTGCTGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGCACTCAAAGGCTTTGCGAATGGAAACCGCGAGAAAAGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGATATCAACAGTAACTTTTGCACTATCAAACATATTTTCGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGTACTAGAGATAAAGTCAATGTTACTTTCACTACTGTGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGTGCTTATCTAAGACCACAAACACTATTCGGAACAAAAAGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG

>NZ_CP021490|2|2|1368840-1369803|CRT
TATTATTTGAATGCTTTGGTAGTA	TGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTA
TATTATTTGATACAATGTGTCCAA	CTAGAAACTTTTAGGAATAATTTACAAAATTAATTAAGTTTCAGTCGCTA
AATTATTTGGTAAACTACTGTTAG	ATCATGGGACATATGGCGGTAGCACAGTCAATAGGTTTCAGTTGCTA
AATTATTTGGTAAACTACTGTTAG	TCAATGCTGTACTAGAAACTACATACAAACTATAGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	TATTTGAAGACCAAACAAGATTTAAGGTTGTTGTTTGGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	TATAGAAAAGTTAAGACCAACCATATCTGATACACGGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	AGAGAGCGATTATGGCGAGAATTTTTACTTTTATTCGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	TGGTTCTACTGGTGGCGGTGGCACTGTCTCTTCGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	AACTATAAACTTGATTACTTATCAACAGTATTGCTGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	CACTCAAAGGCTTTGCGAATGGAAACCGCGAGAAAAGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	ATATCAACAGTAACTTTTGCACTATCAAACATATTTTCGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	TACTAGAGATAAAGTCAATGTTACTTTCACTACTGTGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	TGCTTATCTAAGACCACAAACACTATTCGGAACAAAAAGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG

>NZ_CP021490|2|2|1368967-1369803|PILER-CR
GTTTCAGTCGCTAAATTATTTGGTAAACTACTGTTAG	ATCATGGGACATATGGCGGTAGCACAGTCAATAG
GTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAG	TCAATGCTGTACTAGAAACTACATACAAACTATA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TATTTGAAGACCAAACAAGATTTAAGGTTGTTGTTTG
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TATAGAAAAGTTAAGACCAACCATATCTGATACACG
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	AGAGAGCGATTATGGCGAGAATTTTTACTTTTATTC
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TGGTTCTACTGGTGGCGGTGGCACTGTCTCTTC
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	AACTATAAACTTGATTACTTATCAACAGTATTGCT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	CACTCAAAGGCTTTGCGAATGGAAACCGCGAGAAAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	ATATCAACAGTAACTTTTGCACTATCAAACATATTTTC
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TACTAGAGATAAAGTCAATGTTACTTTCACTACTGT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TGCTTATCTAAGACCACAAACACTATTCGGAACAAAAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG

>NZ_CP021490|2|2|1368967-1369803|CRISPRCasFinder
GTTTCAGTCGCTAAATTATTTGGTAAACTACTGTTAG	ATCATGGGACATATGGCGGTAGCACAGTCAATAG
GTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAG	TCAATGCTGTACTAGAAACTACATACAAACTATA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TATTTGAAGACCAAACAAGATTTAAGGTTGTTGTTTG
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TATAGAAAAGTTAAGACCAACCATATCTGATACACG
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	AGAGAGCGATTATGGCGAGAATTTTTACTTTTATTC
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TGGTTCTACTGGTGGCGGTGGCACTGTCTCTTC
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	AACTATAAACTTGATTACTTATCAACAGTATTGCT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	CACTCAAAGGCTTTGCGAATGGAAACCGCGAGAAAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	ATATCAACAGTAACTTTTGCACTATCAAACATATTTTC
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TACTAGAGATAAAGTCAATGTTACTTTCACTACTGT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TGCTTATCTAAGACCACAAACACTATTCGGAACAAAAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021490.1\|WP_003038939.1\|1379719_1380271_-\|putative-Fe-S-cluster-assembly-protein-SufT	unknown	unknown	gnl\|CDD\|213809
NZ_CP021490.1\|WP_104928910.1\|1364145_1364898_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349968
NZ_CP021490.1\|WP_104928906.1\|1359400_1360603_+\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP021490.1\|WP_104928915.1\|1372121_1377011_-\|type-II-B-CRISPR-associated-RNA-guided-endonuclease-Cas9/Csx12	cas9	cd09704_cas9_CAS-II-B	gnl\|CDD\|187835
NZ_CP021490.1\|WP_104928907.1\|1360599_1361454_-\|bifunctional-methionine-sulfoxide-reductase-B/A-protein	unknown	unknown	gnl\|CDD\|235499
NZ_CP021490.1\|WP_104928916.1\|1380661_1381885_-\|SufS-family-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP021490.1\|WP_014549642.1\|1381987_1383361_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP021490.1\|WP_173677793.1\|1370162_1370747_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP021490.1\|WP_003016533.1\|1378969_1379215_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl\|CDD\|235941
NZ_CP021490.1\|WP_104928909.1\|1362051_1364004_-\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP021490.1\|WP_104928911.1\|1366121_1366475_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021490.1\|WP_003036217.1\|1383415_1384084_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NZ_CP021490.1\|WP_003038948.1\|1364992_1365961_+\|linear-amide-C-N-hydrolase	unknown	unknown	gnl\|CDD\|225591
NZ_CP021490.1\|WP_104928913.1\|1367174_1368260_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275338
NZ_CP021490.1\|WP_104928908.1\|1361582_1362059_+\|tryptophan-rich-sensory-protein	unknown	unknown	gnl\|CDD\|320706
NZ_CP021490.1\|WP_003036243.1\|1366487_1366937_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP021490.1\|WP_003038940.1\|1377681_1378860_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP021490.1\|WP_104928912.1\|1366933_1367182_-\|glutaredoxin	unknown	unknown	gnl\|CDD\|239510
NZ_CP021490.1\|WP_003016538.1\|1380284_1380641_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|223393
NZ_CP021490.1\|WP_003016535.1\|1379219_1379708_-\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674

Protein	Function_ID	Function_description	E-value
NZ_CP021490.1\|WP_003038939.1\|1379719_1380271_-\|putative-Fe-S-cluster-assembly-protein-SufT	gnl\|CDD\|213809	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.97481e-98
NZ_CP021490.1\|WP_104928910.1\|1364145_1364898_+\|RNA-methyltransferase	gnl\|CDD\|349968	cd18095, SpoU-like_rRNA-MTase, SAM-dependent rRNA methylase related to SpoU-TrmH. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.01893e-54
NZ_CP021490.1\|WP_104928906.1\|1359400_1360603_+\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.39012e-74
NZ_CP021490.1\|WP_104928915.1\|1372121_1377011_-\|type-II-B-CRISPR-associated-RNA-guided-endonuclease-Cas9/Csx12	gnl\|CDD\|187835	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	0
NZ_CP021490.1\|WP_104928907.1\|1360599_1361454_-\|bifunctional-methionine-sulfoxide-reductase-B/A-protein	gnl\|CDD\|235499	PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional.	9.98905e-179
NZ_CP021490.1\|WP_104928916.1\|1380661_1381885_-\|SufS-family-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP021490.1\|WP_173677793.1\|1370162_1370747_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.09633e-25
NZ_CP021490.1\|WP_003016533.1\|1378969_1379215_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl\|CDD\|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	1.36021e-07
NZ_CP021490.1\|WP_104928909.1\|1362051_1364004_-\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP021490.1\|WP_014549642.1\|1381987_1383361_-\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP021490.1\|WP_003036217.1\|1383415_1384084_-\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	8.25636e-52
NZ_CP021490.1\|WP_003038948.1\|1364992_1365961_+\|linear-amide-C-N-hydrolase	gnl\|CDD\|225591	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane].	4.63681e-69
NZ_CP021490.1\|WP_104928913.1\|1367174_1368260_-\|radical-SAM-protein	gnl\|CDD\|275338	TIGR04545, rSAM_ahbD_hemeb, heme b synthase. Members of this family are AhbD (alternative heme biosynthetic protein D), a radical SAM enzyme in sulfate-reducing bacteria and methanogens that performs the last decarboxylations to synthesize heme b from Fe-coproporphyrin III. Members include DVU_0855, previously included in error in TIGR04055, the NirJ2 family thought to be involved in heme d1 biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	9.51006e-140
NZ_CP021490.1\|WP_104928908.1\|1361582_1362059_+\|tryptophan-rich-sensory-protein	gnl\|CDD\|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	9.98081e-42
NZ_CP021490.1\|WP_003036243.1\|1366487_1366937_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	2.54542e-26
NZ_CP021490.1\|WP_003038940.1\|1377681_1378860_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	3.95316e-21
NZ_CP021490.1\|WP_104928912.1\|1366933_1367182_-\|glutaredoxin	gnl\|CDD\|239510	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily.	1.63537e-13
NZ_CP021490.1\|WP_003016538.1\|1380284_1380641_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|223393	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones].	1.01145e-25
NZ_CP021490.1\|WP_003016535.1\|1379219_1379708_-\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	3.14569e-85

>NZ_CP021490.1|WP_104928913.1|1367174_1368260_-|radical-SAM-protein
MKHQLKWMAWETTRRCNLKCVHCRSSSECEVLGHPDFSTEEGFRIIDSIVAFANPVLVLSGGEPLLRADIFELAEYGANKGLRMALATNGSLVTDEICEKIKNTNISIVSLSIDGATAATHDDFRNQKGAFEATINAAKLFRKHDIPFLINSSFTKRNQHEITDVYKLAKSLDATAWYLFMIVPTGRGEELIQELIDIDDYQDILNWHYDIEADEQDMLVRPTCAPHYYRIRFERNKEDNAKVRSRALSFGTGGGKGCIAGQSICLLDVDGNIYPCSYLPVSAGNIKEKSFADIWQNSNVLEDMRNFSAYEGKCGACEFIKICGGCRARAYNIHGNYLAEEPFCNHVPIRMRNTEEKQSNE
>NZ_CP021490.1|WP_104928912.1|1366933_1367182_-|glutaredoxin
MNNFKSIVLYRMVTPEKNCPYGLKAKALFEQKGWSFEDNHLKTRAETDAFKAKYNLQTTPLIFIDGQQIGGYSDLLEFLGEK
>NZ_CP021490.1|WP_003036243.1|1366487_1366937_-|acyl-CoA-thioesterase
MNQQLKYFVLSTQVLPEHIDPNKHLNNIVYLQWMQDVAIAHVKANGVFELTESQGLTWFARKHTIEYLSQGFLGDDIAVVTWVESITKISTFRKYHIYRKSDKTLLCKADTLWVMVNAHRGKPAKIPTELVEIFDKYNNFEIDDIKNLI
>NZ_CP021490.1|WP_104928911.1|1366121_1366475_+|hypothetical-protein
MSKCKTHQNHEHKHQDDCGHTKIKHDDHYDYLHDGHLHHEHNGHYDEHTLEVTKKNPDGCHPIKEDCSSHVHGPNCGHEAVPHGDHIDYIVDGRLHHPHGDHCDDHGPVEVIKNDKK
>NZ_CP021490.1|WP_003038948.1|1364992_1365961_+|linear-amide-C-N-hydrolase
MLKKILITPLIILSFLQFSFGCTWFSFENDKGHYFIGRTMEWPGDLNTKITLVPRGYKFGNFTTHYGFVGMSHNGNFSDGMNEYGLAVSALWLSGSKYPDKKDADYNITMLLPYVLGNTTTVAQAVEFIKKHKFYTSVLPEISDKVEITVHFAISDAQGNSVVVEFINGKTKIYDNKIKVLTNDPAYDEQLKLLKKYQDREIKEDKFIAFDYSPQGRFAKMVAFNTTKANTPDDLTAVNHAWSMINTVDIPQGSLYWRWVSSKPQFTSYSVVDDLSNRVYYFRTWDNYDIRKVDLSKIDFAKAKYQADTIFGQADYQEFKFK
>NZ_CP021490.1|WP_104928910.1|1364145_1364898_+|RNA-methyltransferase
MKNLSQKLYKEIKKLHSSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPLNKKYIITEKDFEALSQTQNPQGVLILAEKPKLEELSFGDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFCYITNLAELKNIAKLQQRKIWLTTPHQGVSCYAKDFKLANSILVFGEEANGIEDFSIGQKTMIPTLSDIESLNVAQAATIYLFEGLRQRLR
>NZ_CP021490.1|WP_104928909.1|1362051_1364004_-|BCCT-family-transporter
MQRKKGAYAPVFYPAIVIAAILSLLGVLVPVAFANNIEIIQNLILEKFGWAYILAMSFFVCLCLILMFSRFGDIKLGQDHELPEYTNLSWFAMLFAAGMGIGLMFYGVAEPLNHFLSPPNLSPDSLETVKQAMNTTFFHWGIQAWSVYAVVGLSLAYFAYRHDLPLLPRSVLYPILDDKIYGVIGHAIDIFAILGTLFGVATSLGFGAMQVSSGISFLTGIADTQNMQVLYIIIIVVLATISVALGLDKGIKALSNLNIVLAILLLAFILFLGNTAGLIRDYIQNIGYYLSTIVNQTFNLYAYNQDNQQWLKKWTLFYWGWWIAWSPFVGMFIAKVSKGRTIRQFIIGVLFIPVGFTFLWMTVFGNSAIEIVMTGKAQDLINAANNNIPVALFEFLQHFPFATILSVLAVLLVVTFFVTSADSGALVIDILATGNAQASITVQRIAWSVLGGLLAISLILAGGLQALQSATIISAFPLLFILFLMAISLIKSLRLDYLRIKSIQTHSTVVQYVKADTSWQKRLAAIAAKPTKTQAIEFLQQVVTPAVLEVATEMQKTAINTEITKDDEHVQLIIRIESGDDFVYSVMLRSYQTKADNDTYNRVEVLLGHGGQYYDIIGYSKEQVIADIINQYDKHLHYLHLAVADKDIVN
>NZ_CP021490.1|WP_104928908.1|1361582_1362059_+|tryptophan-rich-sensory-protein
MSQFKITNLISLVLFIIVILTIGYFVGMITSINIPSWFTYLESPFFAPPNWVFAPVWTILYIMIAISGWLIFQQHQLKEKAFIVYVIQLGLNFLWSFIFFCWHNIDLALLEMSILWVFVAWNIIIFRQINNLAGYLLVPYLLWISFAWILNFSYAVLN
>NZ_CP021490.1|WP_104928907.1|1360599_1361454_-|bifunctional-methionine-sulfoxide-reductase-B/A-protein
MLKTKSLTPHEYDIIINKATEKPFTGRYNDLDQKGVYICRNCSTPLFRADSKFISACGWPSYDIHIDNNVKQLPDADGRRTEILCNNCDGHLGHIFHGEGYTKLNTRYCVNSACVDFIPIEDFGTTEEIIVAAGCFWGVEYYMKKLPGVLFAESGYCGGDQPYPDYKKVCQGDTGYLEVVRVIFDTSKVSLQQVLKYFFEIHDFEQVDGQGPDIGEQYKSAIFYYDDKQKQIAEDLKQILAQKGYKVATEIRTMKPYYVAEDYHLDYYMKKGTLPYCHSHKKIF
>NZ_CP021490.1|WP_104928906.1|1359400_1360603_+|multidrug-effflux-MFS-transporter
MFGIRKGSKYLIFFVVIFVALPPFAIDAYIPAFGNIADFFNVNVNKVAITVSTYVVGFGIGMLFWGALSDRFGRKKILTIGMLIYIASSILCSLTHSFDTLILMRFLQGLGDSPAGVAAMAILKDCYRGQKLMKMMATMVMVFMLAPIVAPIIGSLIIYTTGSWQDIFHFLTIYGVILLILTLIMPETHPSYKRSKNLVISFKTYLNHFMNIPFIFGGLTGGLCFGALFSFITASSNLIIGYFHLGYTQYCILFGLNICGVVFASNYIRRKVTAHNQRKLILNGYYFAIIITIINILSSYIFDNIYIFIFLNALLTIGLAFVNITTTSKVIDLLKEGFAAGNAVIRLVKFTVAGTAGFFLSFLSISKLMIGIPAQQLGFIVASLCLFLLIKHRLFPNQYH
>NZ_CP021490.1|WP_173677793.1|1370162_1370747_-|CRISPR-associated-protein-Cas4
MDIFDNHLSIPVNLIRQWCFCPRIVYYQELLAIKPSKPLWVAQGEEFHKKVEQLEKRRSFSRYGLENAIRHFNLSIKSQKYKLHGIVDWVIETDTNVYVVEYKTNPNPNSLGHKLQIAAYALLVQEYFAKPCKTTFLTSDKKSYEIKITDELIKKLIKTISDILSTLDSGNKPDSSATDHQCIQCEYYNFCNDR
>NZ_CP021490.1|WP_104928915.1|1372121_1377011_-|type-II-B-CRISPR-associated-RNA-guided-endonuclease-Cas9/Csx12
MNFKILPIAIDLGVKNTGVFSAFYQKGTSLERLDNKNGKVYELSKDSYTLLMNNRTARRHQRRGIDRKQLVKRLFKLIWTEQLNLEWDKDTQQAISFLFNRRGFSFITDGYSPEYLNIVPEQVKAILMDIFDDYNGEDDLDSYLKLATEQESKISEIYNKLMQKILEFKLMKLCTDIKDDKVSTKTLKEITSYEFELLADYLANYSESLKTQKFSYTDKQGNLKELSYYHHDKYNIQEFLKRHATINDRILDTLLTDDLDIWNFNFEKFDFDKNEEKLQNQEDKDHIQAHLHHFVFAVNKIKSEMASGGRHRSQYFQEVTNVLDENNHQEGYLKNFCENLHNKKYSNLSVKNLVNLIGNLSNLELKPLRKYFNDKIHAKADHWDEQKFTETYCHWILGEWRVGVKDQDKKDGAKYSYKDLCNELKQKVTKAGLVDFLLELDPCRTIPPYLDNNNRKPPKCQSLILNPKFLDNQYPNWQQYLQELKKLQSIQDYLDSFETDLKVLKSSKDQPYFVEYKSSNQQIASGQRDYKDLDARILQFIFDRVKASDELLLNEIYFQAKKLKQKASDELEKLESSKKLDEVIANSQLSQIIKSQHTNGIFEQGTFLHLVCKYYKQRQRARDSRLYIMPEYRYDKKLDKYKNTGRFDDNNQLLTYCNHKPRQKRYQLLNDLAGVLQVSPNFLKDKIGSDDDLFISKWLVEHIRGFKKACEDSLKIQKDNRGLLNHKINIARNTKGKCEKEIFNLICKIEGSEDKKGNYKHGLAYELGVLLFGEPNEASKPEFDRKIKKFNSIYSFAQIQQIAFAERKGNANTCAVCSADNAHRMQQIKITEPVEDNKGNIILSTKAQRLPAIPTRIIDGAVKKMATILAKNIVDDNWQNIKQVLSAKHQLHIPIITESNAFEFEPALADVKGKSLKDKRKKVLERINSENIFKDKNNRIKEFAKGISAYSGDNLASGDFDGAKEELDHIIPRSHKKYGTLNDEANLICVTRGDNENKGNRIFCLRDLANNYKLKQFETTDDLKIEKKIADTIWDANKKDFKFGNYRSFINLTPQEQKAFRHALFLADENPIKQAVIRAINNRNRTFVNGTQRYFAEVLANNIYLRAKKENLNTDKISFDYFGIPTIGNGRGIAEIRQLYEKVDSDIQAYAKGDKPQASYSHLIDAMLAFCIAADEHRNDGSIGLEIDKNYSLYPLDKNTGEVFTKDIFSQIKITDNEFSDKKLVRKKATEGFNTHRQMTRDGIYAENYLPILIHKELDEVRKGYTWKNSEEIKIFKGKKYDIQQLNNLLYCLKFVDKPISIDIQISTLEELRNILTTNNIAATAEYYYINLKTQKLHEYYIENYNTALGYKKYSKEMEFLRSLAYRSERVKIKSIDDVKQVLDKDSNFIIGKITLPFKKEWQRLYLEWQNTTIKDDYEFLKSFFNVKSITKLHKKVRKDFSLPISTNEGKFLVKRKTWDNNFIYQILNDSDSRVDGTKPFIPAFDISKNEIVEAIIDSFTSKNIFWLPKNIELQKVDNKNIFAIDTSKWFEVETPSDLRDIGIATIQYKIDNNSRPKVRVKLDYVIDDDSKINYFMNHSLLKSRYPDKVLEILKQSTTIEFESSGFNKTIKEMLGMTLAGIYNETSNN
>NZ_CP021490.1|WP_003038940.1|1377681_1378860_-|OmpA-family-protein
MRLKSIVIATTVLLGSATASIAAGSDNIDTSANTNSATTQSSGFAANNFIAPFANTYSALTNKDNTWGPQDRTGQWYLGVDANGLAGTPNSPSGAGANFTIGYNINKYFAVQYNQLVGRVFAGLGEGVVNFSNNTMFTPYAAGGAGWANLAGQATGAWDVGGGLKFELSRNVQASVDYRYIQTMAPSNISGANGRAGTNMIGAGLTWFFGGKDTTNNDTGNIQDNGATTAAQTVAMPTIDESKYVLPAGIKQCEGNFNLTEDGVACYTVNGDDVTVYLDTKFAYDKATLNAKGKKAIASFVNFIKDSNIGSVTVKGYASQGQTGSEFDIYNQKLSEKRAQAVADYMKQLGLDSEKIITKGFGYDDTLGGIPKSDPRNQRVEASVSAPLKEAN
>NZ_CP021490.1|WP_003016533.1|1378969_1379215_-|YfhL-family-4Fe-4S-dicluster-ferredoxin
MALLITDECINCDICEPECPNEAISQGEEYYEIDPNKCTECVGHFEESQCTKVCPIRCIIIDPNNIETHQQLLDKYNSLVS
>NZ_CP021490.1|WP_003016535.1|1379219_1379708_-|pantetheine-phosphate-adenylyltransferase
MNKIAIYPGTFDPITNGHVDLVERALNIFDEIVVAVSTAYGKNTLFDIRIREQMIKEVFKDNQRVKVVSFQGLLVDTAVKHNACAIVRGLRAVSDFDYEFQMSSMNNKLNSDIQTIFLTPSEKFSCISSTLVRAVAIHNYKRVDEFVPECVFREIKLKYSKE
>NZ_CP021490.1|WP_003038939.1|1379719_1380271_-|putative-Fe-S-cluster-assembly-protein-SufT
MKPTDVTIIRRQVKAIAVPFGNEIELMPGQEVLVTQDKGGSFTLNVNGNLLHLDGKDADAIGKQIVRYPVEGYDIKPGDPINMDAIWDQMRTVYDPEIPVNIVDLGLIYNIVTRKLENGNFHVIIDMTLTAPGCGMGPVLMTDVEKRVAMLPNVDKVDVVMVFDPPWNSEMMTEAAKLELGLF
>NZ_CP021490.1|WP_003016538.1|1380284_1380641_-|iron-sulfur-cluster-assembly-accessory-protein
MVEVFDPNASSILEVTDAAAKHFKKHLDKHDGCIGIYVGTKVMGCSGLAYDVDFVKQQPQDTQKVQQHGINFFVSNKSMDFLNGLKIDYVKHDFGLYKLEYTNPNESARCGCGESFTV
>NZ_CP021490.1|WP_104928916.1|1380661_1381885_-|SufS-family-cysteine-desulfurase
MYDVNKIRQDFPFLAQKINNKSVLFFDTGASAQKPQAVIECVAEAYAYNYANVHRGVYSLSQEASEKYENVRQIAQKFLNSKSADEIVITKGTTEAINLVASSIGKGIIRSDDEIVVTEMEHHANFVPWQMLCEDKNLDFKVAAVKDNGELDIDNLLALVTAKTKILAITLCSNVLGTINPVKEIIKQVRQINPNIIVLVDGAQAVIHTKVDVQDLDCDFFVFSGHKLYGPTGVGILYGKYELLKQLPPYNYGGDMVDEVTIAKTTFALPPYRFEAGTPNIVEAIGLGRAIEYVDSIGMINIEKHEQKLLEYATAELNKIDGLTIFGQAKHKAGVITFDIQGCNAGDIGELLAIKGICVRTGKHCAHPLMYRMGVTSTVRMSFGMYNTFEEIDLFIIALKKVISQLK
>NZ_CP021490.1|WP_014549642.1|1381987_1383361_-|L-serine-ammonia-lyase
MESTFELFSIGVGPSSSHTIGPMRAGCDFINLYKDKLPQTKRVKIDLFGSLALTGKGHKTDYAVVLGVMGFLPESVDIELAKKLYDECLRNKKLNLGQEFEIDFDYDKDLVFHYNEFLPEHANGMRFSLFNGEELLCEKEYFSIGGGFIVDKKQIKKDTVPTEVSCDKPYKFSTMAELRELCQRDNKTIDEIMFENEKTAYGEQQSLDKLAEIWHVMETSIEKGLTCAEATLPGGLKVRKRAPSMIRKLKEQNIVNTDFNYLNAFAIAVNEQNACGERVVTAPTNGAAGVIPAVLKYYLQTHEIVNQQELKEVVNKYLLVCAAIGILYKSGASISAAEVGCQGEVGVACSMAAAGYCALLGGDLDSIESAAEIGMEHNLGLTCDPIGGLVQIPCIERNAMGAVQAINAAKLAYLDTGEKRFVGLDYVIKVMYETGLDMSSKYKETSLGGLATNVPVC
>NZ_CP021490.1|WP_003036217.1|1383415_1384084_-|M48-family-metallopeptidase
MSYKVKIIYRDVANLKISLNKDGLVTVVSPQKVTKKEIFKILESKKAWLDKHAKRLSVNQKYDYQNYTLNDGDSVYFLGREYPIKIVESKHNIVNYYDDHIQILLNPSVITNRQFKLQLLEEFYKDQADIILNNLVAKYLKITNQEITRVTIKKTKTRWGSCNYVKKTINLNFNLVLRDIQAIEYVVLHEIAHLTHPNHSKEFYAYVASYMPDWKVREKRLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021490_2	2.22\|1369581\|38\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369581-1369618	38	NZ_CP009683	Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence	4753-4790	0	1.0
NZ_CP021490_2	2.21\|1369508\|36\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369508-1369543	36	NC_023026	Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence	29246-29281	1	0.972
NZ_CP021490_1	1.2\|650087\|29\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650087-650115	29	NZ_CP040365	Bacillus flexus isolate 1-2-1 plasmid punnamed2, complete sequence	5276-5304	6	0.793
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP017832	Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence	58601-58630	6	0.8
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP042215	Enterococcus faecalis strain L15 plasmid pL15-A, complete sequence	9782-9811	6	0.8
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_KT897276	Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence	80612-80641	6	0.8
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_KT897280	Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence	90251-90280	6	0.8
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_KT897275	Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence	85535-85564	6	0.8
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_KT897277	Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence	80612-80641	6	0.8
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_KT897278	Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence	87676-87705	6	0.8
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_KT897279	Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence	88812-88841	6	0.8
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP045267	Bacillus megaterium strain FDU301 plasmid pFDU301E, complete sequence	10884-10913	6	0.8
NZ_CP021490_1	1.7\|650412\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650412-650441	30	MG983840	Escherichia phage myPSH1131, complete genome	15652-15681	6	0.8
NZ_CP021490_1	1.7\|650412\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650412-650441	30	MG976803	Escherichia phage myPSH2311, complete genome	19623-19652	6	0.8
NZ_CP021490_1	1.7\|650412\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650412-650441	30	MN508615	UNVERIFIED: Escherichia phage ES17, complete genome	51369-51398	6	0.8
NZ_CP021490_1	1.8\|650478\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650478-650507	30	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	1081-1110	6	0.8
NZ_CP021490_1	1.8\|650478\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650478-650507	30	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	131231-131260	6	0.8
NZ_CP021490_1	1.10\|650607\|27\|NZ_CP021490\|CRISPRCasFinder,CRT	650607-650633	27	MN693475	Marine virus AFVG_25M183, complete genome	7834-7860	6	0.778
NZ_CP021490_1	1.11\|650670\|28\|NZ_CP021490\|CRISPRCasFinder,CRT	650670-650697	28	AP013581	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S23-C56, * SEQUENCING IN PROGRESS *	3618-3645	6	0.786
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NC_007773	Clostridium perfringens plasmid pCPF5603, complete sequence	23090-23119	7	0.767
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013040	Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence	37582-37611	7	0.767
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013041	Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence	37481-37510	7	0.767
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_MK275619	Clostridium perfringens strain JXJA17 plasmid p1, complete sequence	38827-38856	7	0.767
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NC_015417	Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence	179111-179140	7	0.767
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	MN694120	Marine virus AFVG_250M1160, complete genome	11120-11149	7	0.767
NZ_CP021490_1	1.7\|650412\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650412-650441	30	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	381320-381349	7	0.767
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	KP966108	Burkholderia phage vB_BceM_AP3, complete genome	830-859	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_KX868552	Klebsiella variicola strain H152460787 plasmid pJF-787, complete sequence	42882-42911	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039088	Piscirickettsia salmonis strain Psal-111 plasmid unnamed1, complete sequence	30608-30637	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039113	Piscirickettsia salmonis strain Psal-135 plasmid unnamed1, complete sequence	30608-30637	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP038928	Piscirickettsia salmonis strain Psal-013 plasmid unnamed1, complete sequence	62667-62696	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039093	Piscirickettsia salmonis strain Psal-114 plasmid unnamed1, complete sequence	30608-30637	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039172	Piscirickettsia salmonis strain Psal-138 plasmid unnamed1, complete sequence	30608-30637	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013797	Piscirickettsia salmonis strain AY6532B plasmid p1PS9, complete sequence	125216-125245	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013976	Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-1, complete sequence	15423-15452	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP012511	Piscirickettsia salmonis strain PM32597B1 plasmid pPSB1-3, complete sequence	150396-150425	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013824	Piscirickettsia salmonis strain PM25344B plasmid p3PS14, complete sequence	150463-150492	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013804	Piscirickettsia salmonis strain PM22180B plasmid p3PS13, complete sequence	150399-150428	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039869	Piscirickettsia salmonis strain Psal-113 plasmid unnamed1, complete sequence	38835-38864	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013820	Piscirickettsia salmonis strain AY3800B plasmid p4PS10, complete sequence	125218-125247	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013792	Piscirickettsia salmonis strain AY6297B plasmid p1PS8, complete sequence	125185-125214	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013815	Piscirickettsia salmonis strain AY3864B plasmid p4PS11, complete sequence	125217-125246	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039242	Piscirickettsia salmonis strain MR5 plasmid unnamed2, complete sequence	123741-123770	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039071	Piscirickettsia salmonis strain Psal-108 plasmid unnamed1, complete sequence	30608-30637	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039103	Piscirickettsia salmonis strain Psal-118 plasmid unnamed1, complete sequence	30607-30636	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039177	Piscirickettsia salmonis strain Psal-139 plasmid unnamed1, complete sequence	30607-30636	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039108	Piscirickettsia salmonis strain Psal-134 plasmid unnamed1, complete sequence	30608-30637	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039051	Piscirickettsia salmonis strain Psal-081 plasmid unnamed1, complete sequence	46384-46413	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013946	Piscirickettsia salmonis strain PSCGR01 plasmid pPsCRG01-1, complete sequence	147580-147609	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039056	Piscirickettsia salmonis strain Psal-098 plasmid unnamed1, complete sequence	30607-30636	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039078	Piscirickettsia salmonis strain Psal-109 plasmid unnamed2, complete sequence	30607-30636	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039082	Piscirickettsia salmonis strain Psal-110 plasmid unnamed1, complete sequence	38156-38185	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP038919	Piscirickettsia salmonis strain Psal-010b plasmid unnamed1, complete sequence	30607-30636	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP038899	Piscirickettsia salmonis strain Psal-006b plasmid unnamed1, complete sequence	39124-39153	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP048053	Piscirickettsia salmonis strain Ps-11091B plasmid Ps11091B-p1, complete sequence	167794-167823	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	313774-313803	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039061	Piscirickettsia salmonis strain Psal-099 plasmid unnamed1, complete sequence	141951-141980	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP038905	Piscirickettsia salmonis strain Psal-008 plasmid unnamed1, complete sequence	58735-58764	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013787	Piscirickettsia salmonis strain PM58386B plasmid p1PS7, complete sequence	56890-56919	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039229	Piscirickettsia salmonis strain SR1 plasmid unnamed2, complete sequence	150827-150856	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP011850	Piscirickettsia salmonis LF-89 = ATCC VR-1361 plasmid pPSLF89-1, complete sequence	98698-98727	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039236	Piscirickettsia salmonis strain BI1 plasmid unnamed2, complete sequence	138404-138433	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039098	Piscirickettsia salmonis strain Psal-117 plasmid unnamed1, complete sequence	135794-135823	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP039047	Piscirickettsia salmonis strain Psal-073 plasmid unnamed1, complete sequence	151243-151272	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013807	Piscirickettsia salmonis strain PM31429B plasmid p1PS12, complete sequence	56886-56915	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP048060	Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p4, complete sequence	132130-132159	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NZ_CP013782	Piscirickettsia salmonis strain PM49811B plasmid p1PS6, complete sequence	56884-56913	8	0.733
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	MT773556	Myoviridae sp. isolate BML_4 genomic sequence	830-859	8	0.733
NZ_CP021490_1	1.8\|650478\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650478-650507	30	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	192892-192921	8	0.733
NZ_CP021490_1	1.8\|650478\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650478-650507	30	NZ_CP016596	Bacillus cereus strain K8 plasmid pBCM301, complete sequence	218841-218870	8	0.733
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	MK373771	Escherichia phage vB_EcoP_R4596, complete genome	2051-2084	8	0.765
NZ_CP021490_2	2.11\|1369581\|51\|NZ_CP021490\|CRT	1369581-1369631	51	NZ_CP009683	Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence	4753-4803	9	0.824
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	NC_047769	Escherichia virus AAPEc6, complete genome	1770-1803	9	0.735
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	MK373773	Escherichia phage vB_EcoP_KAW1A4500, complete genome	2546-2579	9	0.735
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	NC_019403	Enterobacteria phage vB_EcoP_ACG-C91, complete genome	2495-2528	9	0.735
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	AX384854	Sequence 3 from Patent WO0207742	1725-1758	9	0.735
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	KY435490	Escherichia virus K1E, complete genome	39960-39993	9	0.735
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	MH729818	Escherichia phage LL11, complete genome	1843-1876	9	0.735
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	AY370674	Enterobacteria phage K1-5, complete genome	1983-2016	9	0.735
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	NC_047889	Escherichia virus mutPK1A2, complete genome	2306-2339	9	0.735
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	NC_031922	Synechococcus phage S-CAM9 isolate 1109NB16, complete genome	11816-11845	10	0.667
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	KU686204	Synechococcus phage S-CAM9 isolate 0808SB05, complete genome	11816-11845	10	0.667
NZ_CP021490_1	1.3\|650152\|30\|NZ_CP021490\|PILER-CR,CRISPRCasFinder,CRT	650152-650181	30	KU686205	Synechococcus phage S-CAM9 isolate 0908SB82, complete genome	11816-11845	10	0.667
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	ACSJ01000018	Clostridium phage D-1873 CLG.Contig169, whole genome shotgun sequence	6114-6147	10	0.706
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	NC_007581	Clostridium phage c-st, complete genome	89111-89144	10	0.706
NZ_CP021490_2	2.15\|1369075\|34\|NZ_CP021490\|PILER-CR,CRISPRCasFinder	1369075-1369108	34	AP008983	Clostridium phage c-st genomic DNA, complete genome	89111-89144	10	0.706
NZ_CP021490_2	2.10\|1369508\|49\|NZ_CP021490\|CRT	1369508-1369556	49	NC_023026	Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence	29233-29281	12	0.755

1. spacer 2.22|1369581|38|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to NZ_CP009683 (Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence) position: , mismatch: 0, identity: 1.0

atatcaacagtaacttttgcactatcaaacatattttc	CRISPR spacer
atatcaacagtaacttttgcactatcaaacatattttc	Protospacer
**************************************

2. spacer 2.21|1369508|36|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to NC_023026 (Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence) position: , mismatch: 1, identity: 0.972

cactcaaaggctttgcgaatggaaaccgcgagaaaa	CRISPR spacer
cactcaaagtctttgcgaatggaaaccgcgagaaaa	Protospacer
********* **************************

3. spacer 1.2|650087|29|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040365 (Bacillus flexus isolate 1-2-1 plasmid punnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

ttatatacgcattgctttaatacatggta	CRISPR spacer
ttatatactcattgctataatactttctc	Protospacer
******** ******* ****** *  *

4. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017832 (Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence) position: , mismatch: 6, identity: 0.8

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttctctctaataacacttttaatcttattt	Protospacer
* .*** ****** ************ * *

5. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042215 (Enterococcus faecalis strain L15 plasmid pL15-A, complete sequence) position: , mismatch: 6, identity: 0.8

tgttctataataaaacttttaatcttttat	CRISPR spacer
tttaatataatagagcttttaatcttttgt	Protospacer
* *  *******.*.*************.*

6. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897276 (Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence) position: , mismatch: 6, identity: 0.8

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttttagataatatatcttttaatcttttag	Protospacer
* **  ****** * **************

7. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897280 (Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence) position: , mismatch: 6, identity: 0.8

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttttagataatatatcttttaatcttttag	Protospacer
* **  ****** * **************

8. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897275 (Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence) position: , mismatch: 6, identity: 0.8

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttttagataatatatcttttaatcttttag	Protospacer
* **  ****** * **************

9. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897277 (Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence) position: , mismatch: 6, identity: 0.8

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttttagataatatatcttttaatcttttag	Protospacer
* **  ****** * **************

10. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897278 (Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence) position: , mismatch: 6, identity: 0.8

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttttagataatatatcttttaatcttttag	Protospacer
* **  ****** * **************

11. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897279 (Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence) position: , mismatch: 6, identity: 0.8

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttttagataatatatcttttaatcttttag	Protospacer
* **  ****** * **************

12. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045267 (Bacillus megaterium strain FDU301 plasmid pFDU301E, complete sequence) position: , mismatch: 6, identity: 0.8

tgttctataataaaacttttaatcttttat	CRISPR spacer
tcatctataacaaaacttttaatcatattt	Protospacer
*  *******.************* * * *

13. spacer 1.7|650412|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to MG983840 (Escherichia phage myPSH1131, complete genome) position: , mismatch: 6, identity: 0.8

caaagtgattattgttcaatgaatgttgag	CRISPR spacer
gaaagtgtttattgttcattgaatcaagag	Protospacer
 ****** ********** *****   ***

14. spacer 1.7|650412|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to MG976803 (Escherichia phage myPSH2311, complete genome) position: , mismatch: 6, identity: 0.8

caaagtgattattgttcaatgaatgttgag	CRISPR spacer
gaaagtgtttattgttcattgaatcaagag	Protospacer
 ****** ********** *****   ***

15. spacer 1.7|650412|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to MN508615 (UNVERIFIED: Escherichia phage ES17, complete genome) position: , mismatch: 6, identity: 0.8

caaagtgattattgttcaatgaatgttgag	CRISPR spacer
gaaagtgtttattgttcattgaatcaagag	Protospacer
 ****** ********** *****   ***

16. spacer 1.8|650478|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aaggctatattcgtacaacagaattaacat	CRISPR spacer
atatcgatcttcgaacaacagaattaacat	Protospacer
* . * ** **** ****************

17. spacer 1.8|650478|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aaggctatattcgtacaacagaattaacat	CRISPR spacer
atatcgatcttcgaacaacagaattaacat	Protospacer
* . * ** **** ****************

18. spacer 1.10|650607|27|NZ_CP021490|CRISPRCasFinder,CRT matches to MN693475 (Marine virus AFVG_25M183, complete genome) position: , mismatch: 6, identity: 0.778

aaaaccttgcaaaatcagagcttgaga	CRISPR spacer
gcgacctggcaaaatcacagcttgagg	Protospacer
. .**** ********* ********.

19. spacer 1.11|650670|28|NZ_CP021490|CRISPRCasFinder,CRT matches to AP013581 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S23-C56, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

atgaaatactcttgtcctttgggtgtga	CRISPR spacer
taaaaataattttgtcctttgggtgtgc	Protospacer
  .***** *.****************

20. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NC_007773 (Clostridium perfringens plasmid pCPF5603, complete sequence) position: , mismatch: 7, identity: 0.767

tgttctataataaaacttttaatcttttat	CRISPR spacer
atattaataataaattttttaatcttttat	Protospacer
   *. ******** .**************

21. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 7, identity: 0.767

tgttctataataaaacttttaatcttttat	CRISPR spacer
agttctataataaaacttataataagttga	Protospacer
 ***************** ****   **.

22. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013041 (Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence) position: , mismatch: 7, identity: 0.767

tgttctataataaaacttttaatcttttat	CRISPR spacer
agttctataataaaacttataataagttga	Protospacer
 ***************** ****   **.

23. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK275619 (Clostridium perfringens strain JXJA17 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttttctatattaaaacttttaataacttca	Protospacer
* ******* *************  .**

24. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 7, identity: 0.767

tgttctataataaaacttttaatcttttat	CRISPR spacer
agtctaataattagacttttaatcttttaa	Protospacer
 **.. ***** *.***************

25. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to MN694120 (Marine virus AFVG_250M1160, complete genome) position: , mismatch: 7, identity: 0.767

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttatgtttaataaaacttttagtcttttca	Protospacer
*  * * **************.******

26. spacer 1.7|650412|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

caaagtgattattgttcaatgaatgttgag	CRISPR spacer
cgccctgattattgttcaatgagttttggg	Protospacer
*.   *****************.* ***.*

27. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to KP966108 (Burkholderia phage vB_BceM_AP3, complete genome) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
aaacttataataaaacttataatcctttac	Protospacer
 . ..************* *****.****.

28. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX868552 (Klebsiella variicola strain H152460787 plasmid pJF-787, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
ccctctataataaaactcttaatcatggct	Protospacer
. .**************.****** *   *

29. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039088 (Piscirickettsia salmonis strain Psal-111 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

30. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039113 (Piscirickettsia salmonis strain Psal-135 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

31. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038928 (Piscirickettsia salmonis strain Psal-013 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

32. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039093 (Piscirickettsia salmonis strain Psal-114 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

33. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039172 (Piscirickettsia salmonis strain Psal-138 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

34. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013797 (Piscirickettsia salmonis strain AY6532B plasmid p1PS9, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

35. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013976 (Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

36. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012511 (Piscirickettsia salmonis strain PM32597B1 plasmid pPSB1-3, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

37. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013824 (Piscirickettsia salmonis strain PM25344B plasmid p3PS14, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

38. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013804 (Piscirickettsia salmonis strain PM22180B plasmid p3PS13, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

39. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039869 (Piscirickettsia salmonis strain Psal-113 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

40. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013820 (Piscirickettsia salmonis strain AY3800B plasmid p4PS10, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

41. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013792 (Piscirickettsia salmonis strain AY6297B plasmid p1PS8, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

42. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013815 (Piscirickettsia salmonis strain AY3864B plasmid p4PS11, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

43. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039242 (Piscirickettsia salmonis strain MR5 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

44. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039071 (Piscirickettsia salmonis strain Psal-108 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

45. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039103 (Piscirickettsia salmonis strain Psal-118 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

46. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039177 (Piscirickettsia salmonis strain Psal-139 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

47. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039108 (Piscirickettsia salmonis strain Psal-134 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

48. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039051 (Piscirickettsia salmonis strain Psal-081 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

49. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013946 (Piscirickettsia salmonis strain PSCGR01 plasmid pPsCRG01-1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

50. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039056 (Piscirickettsia salmonis strain Psal-098 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

51. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039078 (Piscirickettsia salmonis strain Psal-109 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

52. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039082 (Piscirickettsia salmonis strain Psal-110 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

53. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038919 (Piscirickettsia salmonis strain Psal-010b plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

54. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038899 (Piscirickettsia salmonis strain Psal-006b plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

55. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048053 (Piscirickettsia salmonis strain Ps-11091B plasmid Ps11091B-p1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

56. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
acttcaataataaaactttaaatctaaatt	Protospacer
  *** ************* *****    *

57. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039061 (Piscirickettsia salmonis strain Psal-099 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

58. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038905 (Piscirickettsia salmonis strain Psal-008 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

59. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013787 (Piscirickettsia salmonis strain PM58386B plasmid p1PS7, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

60. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039229 (Piscirickettsia salmonis strain SR1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

61. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011850 (Piscirickettsia salmonis LF-89 = ATCC VR-1361 plasmid pPSLF89-1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

62. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039236 (Piscirickettsia salmonis strain BI1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

63. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039098 (Piscirickettsia salmonis strain Psal-117 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

64. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039047 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

65. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013807 (Piscirickettsia salmonis strain PM31429B plasmid p1PS12, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

66. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048060 (Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p4, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

67. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013782 (Piscirickettsia salmonis strain PM49811B plasmid p1PS6, complete sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
atatgaaaaataaaatttttaatcttttaa	Protospacer
   *  * *******.*************

68. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to MT773556 (Myoviridae sp. isolate BML_4 genomic sequence) position: , mismatch: 8, identity: 0.733

tgttctataataaaacttttaatcttttat	CRISPR spacer
ttccgcataataaaactctgaatcttttaa	Protospacer
* .. .***********.* *********

69. spacer 1.8|650478|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 8, identity: 0.733

aaggctatattcgtacaacagaattaacat	CRISPR spacer
aaggctattttcgtacaccagaagatatga	Protospacer
******** ******** *****   *..

70. spacer 1.8|650478|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016596 (Bacillus cereus strain K8 plasmid pBCM301, complete sequence) position: , mismatch: 8, identity: 0.733

aaggctatattcgtacaacagaattaacat	CRISPR spacer
aaggctattttcgtacaccagaagatatga	Protospacer
******** ******** *****   *..

71. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to MK373771 (Escherichia phage vB_EcoP_R4596, complete genome) position: , mismatch: 8, identity: 0.765

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gcgaggaagtgctaggaactacatacaaactatt	Protospacer
 *.* *  **.****.*****************

72. spacer 2.11|1369581|51|NZ_CP021490|CRT matches to NZ_CP009683 (Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence) position: , mismatch: 9, identity: 0.824

atatcaacagtaacttttgcactatcaaacatattttc-----gtttcagttgctg	CRISPR spacer
atatcaacagtaacttttgcactatcaaacatattttcaggaagtctgaaa-----	Protospacer
**************************************     **.* *.

73. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to NC_047769 (Escherichia virus AAPEc6, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggcactacatacaaactatt	Protospacer
 ..* *  *******. ****************

74. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to MK373773 (Escherichia phage vB_EcoP_KAW1A4500, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggaactacatacaagctatt	Protospacer
 ..* *  *******.************.****

75. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to NC_019403 (Enterobacteria phage vB_EcoP_ACG-C91, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggaactacatacaagctatt	Protospacer
 ..* *  *******.************.****

76. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to AX384854 (Sequence 3 from Patent WO0207742) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggcactacatacaaactatt	Protospacer
 ..* *  *******. ****************

77. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to KY435490 (Escherichia virus K1E, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggaactacatacaagctatt	Protospacer
 ..* *  *******.************.****

78. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to MH729818 (Escherichia phage LL11, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggcactacatacaaactatt	Protospacer
 ..* *  *******. ****************

79. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to AY370674 (Enterobacteria phage K1-5, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggcactacatacaaactatt	Protospacer
 ..* *  *******. ****************

80. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to NC_047889 (Escherichia virus mutPK1A2, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggaactacatacaagctatt	Protospacer
 ..* *  *******.************.****

81. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to NC_031922 (Synechococcus phage S-CAM9 isolate 1109NB16, complete genome) position: , mismatch: 10, identity: 0.667

tgttctataataaaacttttaatcttttat	CRISPR spacer
aaactattaataaaactttgaatcttttca	Protospacer
 . ..  ************ ********

82. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to KU686204 (Synechococcus phage S-CAM9 isolate 0808SB05, complete genome) position: , mismatch: 10, identity: 0.667

tgttctataataaaacttttaatcttttat	CRISPR spacer
aaactattaataaaactttgaatcttttca	Protospacer
 . ..  ************ ********

83. spacer 1.3|650152|30|NZ_CP021490|PILER-CR,CRISPRCasFinder,CRT matches to KU686205 (Synechococcus phage S-CAM9 isolate 0908SB82, complete genome) position: , mismatch: 10, identity: 0.667

tgttctataataaaacttttaatcttttat	CRISPR spacer
aaactattaataaaactttgaatcttttca	Protospacer
 . ..  ************ ********

84. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to ACSJ01000018 (Clostridium phage D-1873 CLG.Contig169, whole genome shotgun sequence) position: , mismatch: 10, identity: 0.706

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
ttgtgatagtattataaactacatacaaactaaa	Protospacer
*..  .. ***.** ***************** *

85. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 10, identity: 0.706

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
ttgtgatagtattataaactacatacaaactaaa	Protospacer
*..  .. ***.** ***************** *

86. spacer 2.15|1369075|34|NZ_CP021490|PILER-CR,CRISPRCasFinder matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 10, identity: 0.706

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
ttgtgatagtattataaactacatacaaactaaa	Protospacer
*..  .. ***.** ***************** *

87. spacer 2.10|1369508|49|NZ_CP021490|CRT matches to NC_023026 (Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence) position: , mismatch: 12, identity: 0.755

cactcaaaggctttgcgaatggaaaccgcgagaaaagtttcagttgctg-----------	CRISPR spacer
cactcaaagtctttgcgaatggaaaccgcgagaaaa-----------tggagaaaagaaa	Protospacer
********* **************************           **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

75765 : 119666

Staphylococcus_phage(21.43%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104928244.1\|75765_76416_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104928244.1\|78057_78708_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104928268.1\|78895_79840_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_104928244.1\|79951_80602_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_003042806.1\|80695_82468_-\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	4.7e-19	27.1
WP_104928269.1\|82648_83857_-	MFS transporter	NA	NA	NA	NA
WP_104928270.1\|83893_85327_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_104928271.1\|85341_87438_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_104928272.1\|87447_88602_-	acetate kinase	NA	NA	NA	NA
WP_003032783.1\|88707_89187_-	single-stranded DNA-binding protein	I3PUY5	Vibrio_phage	6.5e-24	41.7
WP_104928273.1\|89360_89813_-	regulatory protein RecX	NA	NA	NA	NA
WP_104928274.1\|89799_90879_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	64.2
WP_003013731.1\|90902_91352_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_003042820.1\|91378_91801_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_003029937.1\|91936_92476_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_104928275.1\|92565_93480_-	signal peptide peptidase SppA	A0A2H4UUF9	Bodo_saltans_virus	1.8e-06	25.3
WP_104928276.1\|93553_93907_+	ferredoxin	NA	NA	NA	NA
WP_104928277.1\|94007_95705_+	alpha-keto acid decarboxylase family protein	NA	NA	NA	NA
WP_104928278.1\|95714_96671_-	cation:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	3.5e-29	34.3
WP_104928234.1\|96742_97426_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104928279.1\|98105_99173_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.7e-51	35.4
WP_003022624.1\|99165_99771_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.7e-27	35.1
WP_104928280.1\|99763_100975_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.3e-86	44.1
WP_104928281.1\|100984_101428_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.9e-26	45.7
WP_003040992.1\|101424_101949_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	7.2e-16	37.5
WP_104928282.1\|102030_103023_+	hypothetical protein	NA	NA	NA	NA
WP_104928244.1\|103045_103696_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104928283.1\|103761_104838_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_104928284.1\|104879_105314_-	NUDIX hydrolase	NA	NA	NA	NA
WP_104928285.1\|105327_107112_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	4.2e-23	42.6
WP_003017608.1\|107381_107654_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_003017607.1\|107727_108084_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_003017606.1\|108091_108688_-	SIS domain-containing protein	A0A067XQR2	Caulobacter_phage	5.3e-15	33.8
WP_104928286.1\|108865_111169_+	hypothetical protein	NA	NA	NA	NA
WP_003042850.1\|111235_112387_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_173677728.1\|112489_113386_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.2e-05	28.5
WP_080558964.1\|113588_114473_+	FUSC family protein	NA	NA	NA	NA
WP_071660013.1\|114465_115134_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_003013997.1\|115130_115748_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_003013996.1\|115847_117053_+	amino acid transporter	NA	NA	NA	NA
WP_003032744.1\|117049_117742_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_003032740.1\|118144_118810_+	nitroreductase	NA	NA	NA	NA
WP_104928288.1\|118922_119666_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	4.7e-13	35.0

DBSCAN-SWA_2

965144 : 1036831

uncultured_Mediterranean_phage(23.08%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104928707.1\|965144_965756_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104928244.1\|965873_966524_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104929230.1\|966691_967534_+	DUF3281 family protein	NA	NA	NA	NA
WP_104928708.1\|967685_968549_+	DUF3281 family protein	NA	NA	NA	NA
WP_003039713.1\|969011_970115_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-98	50.6
WP_104928709.1\|970130_971006_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_104928710.1\|971110_971986_+	DMT family transporter	NA	NA	NA	NA
WP_104928711.1\|971997_972570_+	cysteine hydrolase	NA	NA	NA	NA
WP_071660172.1\|972664_972862_+	hypothetical protein	NA	NA	NA	NA
WP_003015446.1\|973122_973479_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.9e-10	49.3
WP_104928712.1\|973534_975472_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_003036861.1\|975490_976435_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.1e-43	39.4
WP_104928713.1\|976507_976996_+	hypothetical protein	NA	NA	NA	NA
WP_003034189.1\|977019_977898_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	4.5e-39	36.6
WP_104928714.1\|977988_979266_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_003018704.1\|979268_979859_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_003015471.1\|979833_980292_+	ribonuclease HI	A0A1S5XYT5	Kurlavirus	2.4e-31	50.7
WP_104928715.1\|980293_981331_+	asparaginase	NA	NA	NA	NA
WP_071514331.1\|981401_982088_+	carbonic anhydrase	NA	NA	NA	NA
WP_104928716.1\|982374_982980_-	hypothetical protein	NA	NA	NA	NA
WP_104928717.1\|983043_983916_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_003018715.1\|983924_984095_-	rubredoxin	NA	NA	NA	NA
WP_071514334.1\|984181_984799_-	hypothetical protein	NA	NA	NA	NA
WP_104928718.1\|984910_986305_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	8.0e-46	32.4
WP_173677765.1\|986336_987611_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_104928720.1\|987812_988841_+	SIS domain-containing protein	NA	NA	NA	NA
WP_071304402.1\|988874_990227_+	sugar porter family MFS transporter	NA	NA	NA	NA
WP_104928244.1\|990283_990934_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_003039668.1\|991291_992038_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_014549896.1\|992134_993340_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_104928721.1\|993354_994062_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_104928722.1\|994080_995874_+	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	4.1e-95	36.2
WP_104928723.1\|995971_997036_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_104928724.1\|997026_997890_-	FTU family class A beta-lactamase	NA	NA	NA	NA
WP_104928725.1\|1000039_1001518_+	hypothetical protein	NA	NA	NA	NA
WP_104928726.1\|1004263_1005742_+	hypothetical protein	NA	NA	NA	NA
WP_104928727.1\|1007273_1009130_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_104928728.1\|1009347_1010031_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104928729.1\|1010442_1012299_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_104928730.1\|1012520_1015145_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_104928731.1\|1015296_1015719_-	hypothetical protein	NA	NA	NA	NA
WP_003036814.1\|1015966_1017457_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_003026299.1\|1017456_1018299_-	CBS domain-containing protein	NA	NA	NA	NA
WP_003039643.1\|1018288_1018777_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_071304394.1\|1018769_1019753_-	PhoH family protein	W8D063	Erwinia_phage	1.5e-43	42.5
WP_003023392.1\|1019756_1021085_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_104928732.1\|1021307_1021982_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_014549885.1\|1022161_1022911_+	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_071304859.1\|1022927_1023521_+	thymidine kinase	E3SFJ8	Shigella_phage	8.3e-45	48.2
WP_104928733.1\|1024182_1025499_+	trigger factor	NA	NA	NA	NA
WP_003015534.1\|1025524_1026130_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.1e-55	55.8
WP_104928734.1\|1026153_1027407_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.4e-126	56.4
WP_104928735.1\|1027431_1029756_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	8.0e-192	47.2
WP_104928736.1\|1029842_1030115_+	HU family DNA-binding protein	Q6QIE5	Burkholderia_phage	8.5e-21	58.9
WP_104928737.1\|1030227_1031661_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_104928738.1\|1031661_1032588_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003015654.1\|1032698_1033028_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_104928739.1\|1033080_1034388_+	GTPase HflX	NA	NA	NA	NA
WP_104928740.1\|1035763_1036831_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA

DBSCAN-SWA_3

1394162 : 1444298

Staphylococcus_phage(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104928244.1\|1394162_1394813_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_014548439.1\|1395018_1395279_+	hypothetical protein	NA	NA	NA	NA
WP_104928922.1\|1395378_1396836_-	MFS transporter	NA	NA	NA	NA
WP_104928244.1\|1397046_1397697_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_003015139.1\|1397895_1399017_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-31	39.2
WP_071514566.1\|1399016_1399898_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_014548441.1\|1399911_1400718_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_104928924.1\|1401684_1402416_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	6.1e-13	35.8
WP_104928925.1\|1402584_1403580_+	hypothetical protein	NA	NA	NA	NA
WP_104928926.1\|1403854_1405939_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_104928927.1\|1406131_1406878_+	TatD family hydrolase	NA	NA	NA	NA
WP_104928928.1\|1406881_1407931_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_104928929.1\|1407952_1408246_+	hypothetical protein	NA	NA	NA	NA
WP_003027955.1\|1408330_1408537_+	hypothetical protein	NA	NA	NA	NA
WP_104928930.1\|1408539_1409457_-	EamA family transporter	NA	NA	NA	NA
WP_104928931.1\|1409468_1411406_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.7e-78	36.2
WP_104928932.1\|1411527_1412391_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	2.6e-63	47.1
WP_104928933.1\|1412407_1413547_-	cation transporter	NA	NA	NA	NA
WP_080542726.1\|1413637_1414207_-	HXXEE domain-containing protein	NA	NA	NA	NA
WP_104928934.1\|1414684_1415335_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_003016585.1\|1415792_1415993_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_104928935.1\|1416239_1416566_+	hypothetical protein	NA	NA	NA	NA
WP_104928244.1\|1416586_1417237_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_003033554.1\|1417486_1417690_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.3e-10	49.2
WP_104928936.1\|1417701_1418811_-	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA
WP_104928937.1\|1419271_1420258_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_104928938.1\|1420459_1421446_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_104928939.1\|1421505_1422225_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_071304219.1\|1422422_1422626_+	hypothetical protein	NA	NA	NA	NA
WP_071304218.1\|1422627_1423485_+	HlyD family secretion protein	NA	NA	NA	NA
WP_104928940.1\|1425276_1426092_-	DUF2797 domain-containing protein	NA	NA	NA	NA
WP_104928941.1\|1426211_1426580_+	RNA-binding protein	NA	NA	NA	NA
WP_104928942.1\|1426638_1427298_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_104928943.1\|1427290_1430401_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.0e-60	28.0
WP_104928944.1\|1430864_1431788_-	hypothetical protein	NA	NA	NA	NA
WP_071304213.1\|1431810_1432173_-	four helix bundle protein	NA	NA	NA	NA
WP_104929237.1\|1432333_1433044_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_104928945.1\|1433826_1434369_-	hypothetical protein	NA	NA	NA	NA
WP_104928946.1\|1434373_1434766_-	hypothetical protein	NA	NA	NA	NA
WP_104928947.1\|1434921_1436409_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.2e-102	40.9
WP_104928948.1\|1436422_1436995_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_173677773.1\|1437080_1438547_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_104928950.1\|1438890_1439532_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_104928951.1\|1439544_1440615_-	dipeptide epimerase	NA	NA	NA	NA
WP_104928952.1\|1440611_1441778_-	DUF819 family protein	NA	NA	NA	NA
WP_003016618.1\|1441823_1442294_-	glutathione peroxidase	Q70H87	Fowlpox_virus	1.3e-19	37.3
WP_104928953.1\|1442322_1442670_-	chorismate mutase	NA	NA	NA	NA
WP_104928954.1\|1442766_1443393_+	hypothetical protein	NA	NA	NA	NA
WP_104928934.1\|1443647_1444298_-\|transposase	IS1595 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1490719 : 1572599

Indivirus(10.53%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104928979.1\|1490719_1491331_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_104928980.1\|1491446_1492250_+	uridine phosphorylase	NA	NA	NA	NA
WP_003016798.1\|1492270_1492672_+	cytidine deaminase	NA	NA	NA	NA
WP_104928981.1\|1492868_1495901_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_104928982.1\|1496119_1497658_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_104928983.1\|1497672_1498953_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-97	56.2
WP_003033443.1\|1499062_1499962_+	ROK family protein	NA	NA	NA	NA
WP_071660340.1\|1500039_1501299_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_003023908.1\|1501302_1501503_-	hypothetical protein	NA	NA	NA	NA
WP_003033440.1\|1501530_1502040_-	hypothetical protein	NA	NA	NA	NA
WP_104928984.1\|1502416_1504198_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	A0A1V0SE00	Indivirus	2.5e-28	35.4
WP_104928985.1\|1504194_1505844_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A1V0SE00	Indivirus	1.4e-25	29.0
WP_003033437.1\|1505845_1507096_-	C4-dicarboxylate transporter DctA	NA	NA	NA	NA
WP_003035976.1\|1507231_1507612_-	RidA family protein	NA	NA	NA	NA
WP_104928986.1\|1507611_1509156_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.3e-81	38.1
WP_104928987.1\|1509253_1510372_-	ABC transporter permease	NA	NA	NA	NA
WP_104928988.1\|1510368_1511301_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.0e-20	29.3
WP_104928244.1\|1511592_1512243_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104928244.1\|1512998_1513649_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104929239.1\|1513849_1514878_+	glycerophosphodiester phosphodiesterase	A0A075KJS1	Lactobacillus_phage	1.1e-12	24.7
WP_071514626.1\|1514984_1516301_+	MFS transporter	NA	NA	NA	NA
WP_104928989.1\|1516316_1517711_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_104928244.1\|1517781_1518432_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104928990.1\|1518723_1520949_+	catalase/peroxidase HPI	NA	NA	NA	NA
WP_104928991.1\|1521052_1522378_+	dNTP triphosphohydrolase	NA	NA	NA	NA
WP_173677775.1\|1522361_1523582_-	MFS transporter	NA	NA	NA	NA
WP_104928993.1\|1524001_1531042_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	3.4e-177	28.6
WP_104928994.1\|1531041_1546110_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	4.1e-188	28.9
WP_104928995.1\|1546597_1547236_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_003026824.1\|1548183_1548528_-	5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA	NA	NA	NA
WP_104928996.1\|1548618_1549452_-	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	2.4e-13	33.0
WP_003026826.1\|1549535_1550165_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_104928997.1\|1550358_1553046_-	fibronectin type III domain-containing protein	I6LMN1	Fathead_minnow_nidovirus	4.1e-06	23.8
WP_104928998.1\|1553513_1554245_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	6.1e-13	35.8
WP_104928999.1\|1554443_1555640_+	glycine C-acetyltransferase	G9E4Q1	Emiliania_huxleyi_virus	7.3e-40	28.6
WP_104929000.1\|1555662_1556718_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.7e-14	64.7
WP_003041986.1\|1556719_1557982_+	serine permease	NA	NA	NA	NA
WP_104929001.1\|1557986_1558676_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_003020516.1\|1558665_1558956_-	septum formation initiator family protein	NA	NA	NA	NA
WP_003035924.1\|1558963_1560334_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	7.9e-139	61.5
WP_104929002.1\|1560437_1561691_-	MFS transporter	NA	NA	NA	NA
WP_003026840.1\|1561778_1562543_-	nicotinamide mononucleotide transporter	U5J9C5	Bacillus_phage	3.2e-33	38.0
WP_104929003.1\|1562562_1563510_-	ROK family protein	NA	NA	NA	NA
WP_104929004.1\|1563509_1564475_-	ROK family protein	NA	NA	NA	NA
WP_104929005.1\|1564484_1565834_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	9.8e-33	26.5
WP_014549531.1\|1565922_1566495_-	hypothetical protein	NA	NA	NA	NA
WP_003019409.1\|1566761_1566980_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_003016871.1\|1566972_1567638_-	uridine kinase	A0A1V0SAA3	Catovirus	9.7e-26	35.8
WP_003038670.1\|1567648_1568476_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.6e-52	41.2
WP_003016875.1\|1568506_1568857_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	2.7e-27	53.7
WP_104929006.1\|1568862_1570944_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_003033386.1\|1571000_1571267_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_104929007.1\|1571848_1572100_+	hypothetical protein	NA	NA	NA	NA
WP_158665956.1\|1572060_1572186_+\|transposase	transposase	NA	NA	NA	NA
WP_158665954.1\|1572213_1572423_+	hypothetical protein	NA	NA	NA	NA
WP_104929008.1\|1572368_1572599_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1682171 : 1749997

Prochlorococcus_phage(13.33%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003038532.1\|1682171_1683062_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_003041826.1\|1683153_1684617_-	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_104929074.1\|1684659_1686933_-	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	4.5e-06	32.2
WP_104929075.1\|1687037_1688507_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_003033234.1\|1688516_1689788_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_104929076.1\|1689821_1691456_-	alpha-D-glucose phosphate-specific phosphoglucomutase	NA	NA	NA	NA
WP_104929077.1\|1691756_1693679_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_104929078.1\|1693739_1696952_+	type I pullulanase	NA	NA	NA	NA
WP_104929079.1\|1696961_1697804_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_104929080.1\|1697809_1698682_-	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_104929081.1\|1698653_1699964_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA
WP_104928760.1\|1701892_1702543_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_104929082.1\|1704968_1706414_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	E3ST28	Prochlorococcus_phage	8.7e-80	40.0
WP_104929083.1\|1706419_1707787_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	E3ST28	Prochlorococcus_phage	3.5e-54	36.2
WP_003018004.1\|1707851_1708235_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_104929084.1\|1708292_1709369_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_003035692.1\|1709459_1711601_-	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_104929085.1\|1711716_1712412_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	4.9e-36	38.2
WP_104929086.1\|1712404_1713667_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_104929087.1\|1714372_1715008_-	peptide deformylase	NA	NA	NA	NA
WP_104929088.1\|1715085_1718565_-	DNA polymerase III subunit alpha	A0A0K1Y8J9	Streptomyces_phage	8.9e-171	35.7
WP_104929089.1\|1718901_1719198_+\|transposase	transposase	NA	NA	NA	NA
WP_104929090.1\|1719173_1719842_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.6e-36	37.8
WP_104929091.1\|1719976_1721581_-	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0S9M4	Catovirus	1.4e-65	32.6
WP_104929092.1\|1721567_1722794_-	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	5.3e-54	35.3
WP_104929093.1\|1722795_1724034_-	MFS transporter	NA	NA	NA	NA
WP_104929094.1\|1724035_1725457_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_104929095.1\|1726709_1728683_-	lytic transglycosylase domain-containing protein	K4NWI2	Pseudomonas_phage	3.1e-11	36.4
WP_104929096.1\|1728881_1730000_+	exo-alpha-sialidase	NA	NA	NA	NA
WP_003033214.1\|1729992_1730592_+	hypothetical protein	NA	NA	NA	NA
WP_104929097.1\|1730578_1731265_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	S5VTE5	Leptospira_phage	1.1e-11	23.3
WP_104929098.1\|1731261_1733490_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	7.9e-80	35.2
WP_104929099.1\|1733622_1734336_-	DNA repair protein	NA	NA	NA	NA
WP_003027085.1\|1734381_1735230_-	hypothetical protein	NA	NA	NA	NA
WP_104929100.1\|1735231_1736002_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_003033203.1\|1736128_1736458_+	hypothetical protein	NA	NA	NA	NA
WP_003017957.1\|1736708_1736912_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	9.8e-14	56.7
WP_003033202.1\|1736911_1737109_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_173677779.1\|1737105_1737621_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003041772.1\|1737710_1739549_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HVL7	Paramecium_bursaria_Chlorella_virus	6.0e-126	42.7
WP_104929102.1\|1739569_1740937_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A167R6F2	Powai_lake_megavirus	3.2e-31	34.8
WP_104929103.1\|1740950_1741994_-	bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase	A0A1B0V161	Roseobacter_phage	1.2e-54	37.0
WP_003033197.1\|1742002_1742983_-	hypothetical protein	NA	NA	NA	NA
WP_003033196.1\|1743082_1743934_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_003017929.1\|1743906_1744242_-	hypothetical protein	NA	NA	NA	NA
WP_104928244.1\|1744828_1745479_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_003023179.1\|1745791_1745965_-	hypothetical protein	NA	NA	NA	NA
WP_003017926.1\|1746293_1746950_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003035655.1\|1747063_1748119_+	ligand-gated ion channel	NA	NA	NA	NA
WP_104928545.1\|1749346_1749997_-\|transposase	IS1595 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1797749 : 1807349

Klosneuvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104929122.1\|1797749_1799756_+	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	3.1e-51	25.9
WP_003026519.1\|1799837_1800191_+	YraN family protein	NA	NA	NA	NA
WP_104929123.1\|1800187_1801285_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_003035603.1\|1801287_1801779_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.5e-20	40.1
WP_003017844.1\|1801895_1802471_-	phosphoribosylglycinamide formyltransferase	Q58MV3	Prochlorococcus_phage	2.2e-18	34.7
WP_104929124.1\|1802474_1804787_-	phosphoribosylamine--glycine ligase	A0A0M4JBD3	Mollivirus	1.2e-25	30.4
WP_003020889.1\|1804786_1805830_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	5.4e-55	36.6
WP_003033096.1\|1806047_1806338_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_003033095.1\|1806500_1807349_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.4e-29	38.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021490

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection