CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016611	Xylella fastidiosa strain Salento-2 plasmid pSal2, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2 crisprs	DEDDh,Cas9_archaeal,WYL,csa3,DinG	4	4	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016610_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016610_1

2076856-2077004

Orphan

Consensus_repeat	Method
GTTGTCGAGGGTGGTGGTGTGCAGGT	CRISPRCasFinder

2 spacers

DinG

The CRISPR arrays of NZ_CP016610_1

>merge|NZ_CP016610|1|2076856-2077004|CRISPRCasFinder
GTTGGTGAGGGTGGTGCCGTCAATCTGGAGGGTGCCGCTGCTGCTGATGTGGCCGGTAGCGGTGTTGTCGAGGGTGGTGGTGTGCAGGTGGGTGGCGGTCTGGGAGTCGATGGTGCCGCCGCGGTTGTCCAGGGTGGTGGTGTGCAGGT

>NZ_CP016610|1|1|2076856-2077004|CRISPRCasFinder
GTTGGTGAGGGTGGTGCCGTCAATCT	GGAGGGTGCCGCTGCTGCTGATGTGGCCGGTAGCGGT
GTTGTCGAGGGTGGTGGTGTGCAGGT	GGGTGGCGGTCTGGGAGTCGATGGTGCCGCCGCG
GTTGTCCAGGGTGGTGGTGTGCAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016610.1\|WP_046418687.1\|2064157_2065171_+\|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213364
NZ_CP016610.1\|WP_031337046.1\|2084247_2086626_+\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
NZ_CP016610.1\|WP_023906937.1\|2082821_2084153_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NZ_CP016610.1\|WP_046418664.1\|2079990_2082573_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NZ_CP016610.1\|WP_053014121.1\|2061436_2061961_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016610.1\|WP_046418690.1\|2063060_2064161_+\|DUF4105-domain-containing-protein	unknown	unknown	gnl\|CDD\|379156
NZ_CP016610.1\|WP_046418692.1\|2062059_2062941_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|226910
NZ_CP016610.1\|WP_046418658.1\|2091009_2092122_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP016610.1\|WP_046418695.1\|2060951_2061437_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|223396
NZ_CP016610.1\|WP_046418867.1\|2092118_2092838_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023
NZ_CP016610.1\|WP_010893418.1\|2065756_2066110_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016610.1\|WP_046418663.1\|2086622_2087195_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP016610.1\|WP_046418682.1\|2066356_2067184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016610.1\|WP_046418685.1\|2065561_2065753_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016610.1\|WP_046418678.1\|2068898_2069747_-\|DUF769-domain-containing-protein	unknown	unknown	gnl\|CDD\|283284
NZ_CP016610.1\|WP_053014119.1\|2089575_2090184_-\|D-alanyl-D-alanine-carboxypeptidase-family-protein	unknown	unknown	gnl\|CDD\|224788
NZ_CP016610.1\|WP_046418660.1\|2090212_2090875_-\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|238448
NZ_CP016610.1\|WP_010893406.1\|2082569_2082800_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016610.1\|WP_046418680.1\|2068023_2068902_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016610.1\|WP_046418661.1\|2087314_2089342_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120

Protein	Function_ID	Function_description	E-value
NZ_CP016610.1\|WP_046418687.1\|2064157_2065171_+\|magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	6.11304e-145
NZ_CP016610.1\|WP_031337046.1\|2084247_2086626_+\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP016610.1\|WP_046418658.1\|2091009_2092122_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	3.56238e-44
NZ_CP016610.1\|WP_046418664.1\|2079990_2082573_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	3.87478e-77
NZ_CP016610.1\|WP_046418867.1\|2092118_2092838_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	5.12689e-61
NZ_CP016610.1\|WP_053014119.1\|2089575_2090184_-\|D-alanyl-D-alanine-carboxypeptidase-family-protein	gnl\|CDD\|224788	COG1876, VanY, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	1.81577e-57
NZ_CP016610.1\|WP_046418692.1\|2062059_2062941_+\|HlyC/CorC-family-transporter	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	1.33415e-153
NZ_CP016610.1\|WP_046418695.1\|2060951_2061437_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|223396	COG0319, COG0319, Predicted metal-dependent hydrolase [General function prediction only].	3.71806e-60
NZ_CP016610.1\|WP_046418663.1\|2086622_2087195_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.87489e-05
NZ_CP016610.1\|WP_046418690.1\|2063060_2064161_+\|DUF4105-domain-containing-protein	gnl\|CDD\|379156	pfam13387, DUF4105, Domain of unknown function (DUF4105). This is a family of uncharacterized bacterial proteins. There is a highly conserved histidine residue and a well-conserved NCT motif.	5.0882e-12
NZ_CP016610.1\|WP_023906937.1\|2082821_2084153_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	1.39195e-25
NZ_CP016610.1\|WP_046418678.1\|2068898_2069747_-\|DUF769-domain-containing-protein	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	4.60496e-161
NZ_CP016610.1\|WP_046418660.1\|2090212_2090875_-\|carbonate-dehydratase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	2.63681e-109
NZ_CP016610.1\|WP_046418661.1\|2087314_2089342_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	4.6285e-178

>NZ_CP016610.1|WP_046418678.1|2068898_2069747_-|DUF769-domain-containing-protein
MQRRPLLGVSLLAASLLLAGCSSGPPIDSRTGKPMMAGPWENRDLSLEYFQLDFFGQYTVKHAFINGINIKRCYRGSPPDHVQVVMMTTPSGFTTPGIVVTGGGRPPRPADESDAFIGSQYSNTSNKYDPDSRTVLRNPDGTPQKKVVKGWEFNALCSAEFAGGNYIGFGIRSAASQSIEEKIQSALSRISAPDRDYKSNRFIDAPRTETRWGNPWTWYRAYMPTPVGDGVEIWMTPIGDSGYYITVYLNFIEAARQQNTEDYQRARKLMDGILQSVVIQKQ
>NZ_CP016610.1|WP_046418680.1|2068023_2068902_-|hypothetical-protein
MTGWVIPWRPLITHVMNRLYIQDSGETYRNTTYLAYTKPTHPLGELVTAGIEKLLEITKIASPASRLQAAAAKELMYNAEDKKYTNPIYIEGHSRGTMMLSNALRVLAADHVFSDFLEIRAYNPAAEGGRLTEAAALVTSNSVDIWSPRKDFVANKIGGYAGDATFHDLREIFQTNYSVHSSGGTAALGSDSNHVDEHKLFSYDGLNINDMNAKRQGRTNGLLQQWQKTPSPENPVATQLTQLQRLLWQSGQWQQQLDTTPGLLTRPTPTTPDAPSARQQQLQQLRQSLTPY
>NZ_CP016610.1|WP_046418682.1|2066356_2067184_-|hypothetical-protein
MTGWVIPWRPLITHVMNRLYIQDSGETYRNTTYLAYTKPTHLLGELVTAGIEKLLEITKIASPASRLQAAAAKEVMYNASKDNYSNPVYLEGHSRGTMTLSNALRVLGGLDLGDTKLEVLAYNPAAEGGRLTEAAALVTGKPVKTWAPPKDFVANKIGGYDGDATFHDLWEIFQTNYSVHSSGGTAAQFSSHTLNLTAAGNLDAHSAQSTQEQTSSQRHRSASLGTKIGVTGGGPSVSADVARGRGSAGRDSAEGQCYLRGAEVGNQTLHGCRLS
>NZ_CP016610.1|WP_010893418.1|2065756_2066110_+|hypothetical-protein
MKNTYVIALLAVTTATLLSGCATKRYGRLQPLTSYESRNYNCTQIDLELAKIDAFEQQVTEQAKFSGMSVASFLGDFGIGNTLERNQAIKTAKERRTQLITARSTKGCDNHPQPKQP
>NZ_CP016610.1|WP_046418685.1|2065561_2065753_+|hypothetical-protein
MKNTYVIALLAVTTATLLSGCATHRHEKTKNDVTERHTEDCAKQQHHKCGTKSKKTHQHQAEE
>NZ_CP016610.1|WP_046418687.1|2064157_2065171_+|magnesium-and-cobalt-transport-protein-CorA
MTTPQPPQHPSPENPTCVITCAYYDPQNQRHDIHLDRLSEELQCDNSFIWVGLYEPDATVLRKLQQEFGLHDLAIEDALKAHQRPKVENYGNTLFIVVNTAQLIGERICYGETHAFLSTRFLIIVRHGASLSYAPVRTRIERDPTMLGRGPAFCLYGVLDFIVDNYLPIMNECRDTLEQLEQDIFSENYQRQTVIRLYELKRELNKMRLVVAPLQDVLAHLTRNAETLLPQDIGIYIRDVLDHAIRINDSIDTLREMLSTALSVNLSMVTLAQGETVKRLGAWAALLAAPTLITSWYGMNFTNMPELHIPYAYPLLAAGVTLFCILLYRLFKRVHWL
>NZ_CP016610.1|WP_046418690.1|2063060_2064161_+|DUF4105-domain-containing-protein
MQPGQLFFEHFGHDAIIVADPISGQSLSYNFGYFDPLEPDFLRRLIRGEMLYYLISLPLEKDLDEYRTTGRSITIQWLDLPPEQATALAQTLAIRSRPEHARYRYDYFTANCATMVRDTLNQAMGGTLKTQLTQHTQNNTYRNETIRLASPTPWMSLTFDLSLGPYADKPLTPWEESFIPMHLAQHLTQVHNSAGRPLVQQTQIIPPHHPITPSPHPLPRPWTWWLLGLGIATLTLLLAPHHPRRLTLLALPFWLICTLGGLILIYLWGFTTHQAAWANRNLLLLNPLSLLLIVGGITWLCGRTPGRWFDLLLWSNAAASLAALLTYWLPAYTQHNLSWIGLLLPNHLALTWTLHRRLTTATHHPK
>NZ_CP016610.1|WP_046418692.1|2062059_2062941_+|HlyC/CorC-family-transporter
MSEDDDHRTITESQEKRRSWLERLSAAFSGDPHTLDDLLVILRSAEHHGIIATDTLRMMEGAIAIADLTVGDVMVPRSQMVSLPVESDLQTITKQMIESGHSRFPVHGEDKDEVLGILLAKDLLRGVSANHTITNVHELLRPVGMIPESKKLNVLLKEFRLSHNHMAIVVDEYGGVAGLVTIEDVLEQIVGDIDDEHDETEDQTKMIAIQADGCYIVDALTPIEDFNERFNAEFPDDDYDTIGGLVTEAIGHLPETGDELTLDRFAFRVAKANARRIHILHVTVLPPNEQNAA
>NZ_CP016610.1|WP_053014121.1|2061436_2061961_+|hypothetical-protein
MRASLTALLTTLPTLICLAAEHPHLTPPNLEALIECRQRTIDYAQLVPLLEDPPKATTLGWHPLPATNPFMTEYTLHTPIHVFGHQTKHIALSGGSIIAILDLPDPRPLARTLQLHTAIDTPKKTIFGRELTSANTTNPKTGQPAIESIVLNVSNVTSHPGKTLVGCTYSLDEP
>NZ_CP016610.1|WP_046418695.1|2060951_2061437_+|rRNA-maturation-RNase-YbeY
MTRGPTFLNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRKADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEPLPKALKIPLLGDIVMCAPVIAREAAEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQLEREILANLSISDPYLEEY
>NZ_CP016610.1|WP_046418664.1|2079990_2082573_-|glycosyltransferase-family-4-protein
MKLVIDLLGAQTRSHLRGIGRYTRELTKALLRQAGEAHAIHLVLHAPLEQASDALIAEFGALLPRARIHLLRLPRHTSEHLTGNTWRHHAASRLSRYGLTCLDADVVWHSSVFEGYDEDGVLPDAPLFHTNRVATLYDLIPLHDPEVFLPGSLPKAWYERRSAFLSSCDLLFCLSEWTAQEAVQRLHLDPERLVVIGGGVDSNFRPLVFDAQQRGNLLARFSITRPYVLYNGGLDQRKNVPALLRAFALLPMAIRQRHQLVVLGDDREVHRSMIALCRQLGLDQQEVVFTGRVNDSDLVALYGLCALFVFPSRLEGFGLPVLEAMACGAPTLCSDAASLPEVAGRQDILFPPEDHVALSARMSQVLDDPQWLQSLRDYGLRRATAFTWDRVAQRALDALTQLQVRSSGMKSRPMSGASPATHTDTAAPEMLPITEIQLVTDLAALPGDASRDDLAQAAFSICSMRVAPQAPQWLVDVSQIAKTDIGTGTSRVTRSILREWLSTPPPGVCIVPVYLREGQYHYARSFTAQVLGLVSETPQEGIVMVYPGDVFVGLDWAPEAINAARARLQDWRRVGVATCFVVHDLLPMTLPDCFHPYSRNLFEQWLRTVAHLADAIACISATTAEVLSRWLQDTTVDYQFGIPPQVKHFPLGVSFPEVSTAQEAIREELRTALVMRPTLLIVGTLEPRKGHVHALRICEQLWEQGEDVNLVVVGQRGWSEQALVMRLTRHPEVGRRLFWLSDAADAELSALYVHATALLALSEGEGYGLPLLEAAHFRLPILARPLPVFLEIMADYPHYLDGTAPDTWSATVAQWLHASDRPISRPVPIASWKESAQQLADIVNDCRFLLDSKKLSAPLK
>NZ_CP016610.1|WP_010893406.1|2082569_2082800_-|hypothetical-protein
MSLSRITALIARHDRLKRLMVRLLSCVPAVDVWLRHHVSARKYRRSLLDVGEADLPEVAVSVYQQLLIATGKDGRL
>NZ_CP016610.1|WP_023906937.1|2082821_2084153_-|glycosyltransferase
MSVDSVSRKHDRIPFIRFLGVYLLFQWRRQCARLHRARIALYSRRFGQWIRLRAAVSADQSAPPSVAAVVSASATQTPTNTRCILLIDTVPPRPDRDSGSLRCHHLMHLMVCMGYKVVLHCQERMPSAAEVMALRAIGVTTTAVAGGFPSWLLTNPERYCAVVVCRYHLGLSWLPLLRAFVPDSLCILDTVDLHHLREQREAELRNLSGLRAAAAITRRHELHAISCADLVWVVSPVERDYLARLLPQARVEVVPNMHDMVETIPPFVSRHGFLFVGGSRHPPNVDAVRWLLSEIFPRIRERLPDAQLHLVGAGLAEAMQSQQMICPGVSFHGHVPEMAPLLHACRVSLAPLRFGAGVKGKISEALAYGLPVVTTPEGAEGMYLRSGMDALISGDAEDLARQAVCAHEDLEVWQRLSDNGQQIIKQHFSLHSTRAALAVMLPH
>NZ_CP016610.1|WP_031337046.1|2084247_2086626_+|penicillin-binding-protein-1B
MSGHSPWWGWLIACGLAGLALAMGFLIPYTLYLNQQVTARFGELRWQIPTRVYARPLMLQPGMALDARTLKIELDAASYREDNHGELPGTYQQQNGRFTVSSRGYVDVDGAIPASRLIITLNNNQVSALRNADTRKPIRRGRLDPARIATLYGQKQEERRLVRLEEVPQLLVTGLQVVEDRDFKHHHGIDITSILRAAWVMVRSGGGVRQGASTLTQQLARSGLLGIGKEQTLQRKCNEILYALILEARYSKRVILESYLNQVYLGQRGSQAVHGVATGAEFWYGRELGSLTTEQVALLIGLVKGPSYYDPRRFPDRALSRRNFVLGKLHENKLIDDAEYMRAQASSLGVPKEPGLVAANRFVAYLDLVRRQLAHDYPENVLRGAGMTVLTGMSPSAQSYAERGVQTTLSALEKVKGQKRPPLQAGLVLTDVHNGDVLAVVGSRDATQSGFNRAIEAQRQVGSLLKPFVYLLALASPDRWSLSSWVEDTPVSIPLAHGRIWSPSNSDNISHGTVRLIDALAHSYNQATVRVGMQVGPERVAQLINVLAGLKADANPSLILGATDQSPYAMTQLYQFLASGGEIQPLHAVRGVLDPQNKLLKRYDNTPAPAQPGDSVAANVISVALQEVVNSGTARQLIIDGLGRLSPAGKTGTSNDGRDSWYAGYTGNHLAVIWVGNDQNEQTGLYGATGAMRVWSSIFSQLPSTRLQVNGKGLDWQSVEPMGTGTTDANCPGARRFPFVAGFAPPYAACSGAGGAPEAGHNIGWRNWFGLDKQKGDQASPPTTPPPDQSTQ
>NZ_CP016610.1|WP_046418663.1|2086622_2087195_+|hypothetical-protein
MKRLPVPFRTFTVTVMMPVALTACISPPQPATPAPAPAPPPPATPPPVDTLSPAQRLAAVTNIASADDTELLVQPLHDLQIDDLRQAAKAKRQAGNLAAAAAALDHALELVTNDPAVLQERAEIALLQSDWTGAEHYAKRAVELGSRTGPLCRHHWATIEQARLARGEKENASSAHTQIGRCTVPGIKRY
>NZ_CP016610.1|WP_046418661.1|2087314_2089342_+|ATP-dependent-DNA-helicase
MSLLSRASIEALSDGGLLARRLDNFVPRPGQQRLTAAIGEIFEQRNILLAEAGTGTGKTFAYLVPTLLSGLKTIISTGTRALQEQLYHRDLPRVRAALGVDLRSALLKGRTNYVCKYRLEQTCAAPHLGNAEQTTQLQRILTWSGHTQFGDMAELDTLPDDSPLLPLVTSTLDNCLGKDCPFWNECFVVQARQRAQAADVVVVNHHLLLADLALKQEGFGEILPGAQAFIIDEAHQLPALAANFFGESFGMRPLQELGRDCMIEARSVAGAQAALQHSVWQLEQALRTLRAAMEGLPSRGTQSRLLAKPEVCEGFETLITALTSMHSLLVPLRSAAAGLDACAARAQEALSRLLRWLGETAETSGFEGNLPPNNDVLWYELTQRSFRCQRTPLDVSAQLQAHRETSMAAWVFTSATLAVDGTFEHIARRLGLNHPMTLLQPSPFDWVRQALCYLPPGLPNPATHGFGVALIEALIPVLEASSGRAFLLFASHRALREAATALRGGPWPLFVQGDAPRATLLDRFRVSGNGLLLGSASFREGVDVAGEALSVVVIDKLPFTAPDDPVFEARLEAIRQEGGNPFFDEQLPQAVIALKQGVGRLIRSESDRGVLVLCDPRLLSKSYGRIFLDSLPSFPQTRDIAEVRAFFNGSNTAPTESPHDSPTSHREASGVHRIG
>NZ_CP016610.1|WP_053014119.1|2089575_2090184_-|D-alanyl-D-alanine-carboxypeptidase-family-protein
MNVYSSNEDTPNAPDMLSWRVHTQKNDPLPLPELKARLLALGIDADRYARTTGLFIELEPTTLADAGYDRYQRPLLLTVDAARAWHAMRQAAVRDGIVLDAISGYRSYAYQFGIFENKLAQGKTLQEILTVNAAPGFSEHHSGEALDIGMPGEPPVKESFEGSSAFAWLQGHAGRFGFHLSYPRKNPYGIVYEPWHWRWRAR
>NZ_CP016610.1|WP_046418660.1|2090212_2090875_-|carbonate-dehydratase
MHSLEHLLQNNRNWCERINQEDPEFFARLSKQQSPEYLWIGCSDSRVPANQIIDMAPGEVFVHRNIANVVVHTDLNCLSVIQFAIDVLKVKHILVVGHYGCGGVLASLTRARLGLVDNWIRHVTDVAEKHNSYLETIVALPDQHARLCELNVLEQVLNVCRTSIVRDAWSRTQPLTVHGWVYSLSNGLVHDLGIDVDRFEMLPSCYADALARIQADQVVH
>NZ_CP016610.1|WP_046418658.1|2091009_2092122_-|glycosyltransferase-family-4-protein
MKVLFVGTSRGGGGAESHFVGLVRAMAETNHQSTVLVHPDGLIARQLQQMAIRLFTATFRNVMDLRGYLVIARALRLVDPDVLVGDFGKEYWPLLLMGRLYRLPVVLFRHRLPPMNRFSTYWVPRLADRFFAVSAYARRHYLAEGMPPERVQVLYNPVDTDALRPDPRLRRAMLHELGWDEDVLVVGCFGRIHEGKGVFVLAEAMEQAMQEEPRLCCLWMGTGLHVQRLAATVAGSRFASRQRVLGWVTDPARYFQALAMLAMPSLLPETFGRVSAEAQASGVPVLVSDVGGAAETLQDGTTGMLLPAGDVPAWRNAILAFCDPQPRAAMAAAAPSFVEARFSQQVIAAEFISELERVISDRHHMIAPMR
>NZ_CP016610.1|WP_046418867.1|2092118_2092838_-|polysaccharide-deacetylase-family-protein
MAIPILMYHNIAKVPKQVRHLRGLYVTPAAFARQMWLLHRLGYCCLSMSAAMPYLRGERSGKVMVVTLDDGYLDNLQAALPVLQAHGFSATCYVVSGSLARFNTWDAERLKVCKPLMSPAQVRQWHDAGMEVGAHTRSHPHLSGCTAAQLHEEIAGCRDDLEQCIGAPVTQFCYPYGDVTPPVIDVVCDAGYAAATTTRRGRVFPGQHLWTLPRVPVSYRHILPQFALRTLTAYEDRRI

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Crispr_ID: NZ_CP016610_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016610_2

2497998-2498146

Orphan

Consensus_repeat	Method
GTTGTCGAGGGTGGTGGTGTGCAGGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP016610_2

>merge|NZ_CP016610|2|2497998-2498146|CRISPRCasFinder
GTTGGTGAGGGTGGTGCCGTCAATCTGGAGGGTGCCGCTGCTGCTGATGTGGCCGGTAGCGGTGTTGTCGAGGGTGGTGGTGTGCAGGTGGGTGGCGGTCTGGGAGTCGATGGTGCCGCCGCGGTTGTCCAGGGTGGTGGTGTGCAGGT

>NZ_CP016610|2|2|2497998-2498146|CRISPRCasFinder
GTTGGTGAGGGTGGTGCCGTCAATCT	GGAGGGTGCCGCTGCTGCTGATGTGGCCGGTAGCGGT
GTTGTCGAGGGTGGTGGTGTGCAGGT	GGGTGGCGGTCTGGGAGTCGATGGTGCCGCCGCG
GTTGTCCAGGGTGGTGGTGTGCAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016610.1\|WP_010895177.1\|2484517_2484826_-\|putative-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|226162
NZ_CP016610.1\|WP_046420943.1\|2481445_2482207_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|227102
NZ_CP016610.1\|WP_140190082.1\|2501291_2501501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016610.1\|WP_120279371.1\|2486951_2487344_-\|hemagglutinin	unknown	unknown	gnl\|CDD\|283284
NZ_CP016610.1\|WP_046417560.1\|2501571_2502927_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|223561
NZ_CP016610.1\|WP_046420946.1\|2484829_2485129_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|162974
NZ_CP016610.1\|WP_004085093.1\|2507933_2508074_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP016610.1\|WP_046420955.1\|2487511_2487904_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP016610.1\|WP_046420952.1\|2485982_2486252_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016610.1\|WP_046420980.1\|2489453_2489831_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP016610.1\|WP_046420959.1\|2487913_2489017_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283284
NZ_CP016610.1\|WP_046420982.1\|2490343_2490721_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP016610.1\|WP_046420949.1\|2485212_2485983_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016610.1\|WP_075584703.1\|2507467_2507875_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|179882
NZ_CP016610.1\|WP_046417565.1\|2505725_2507423_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP016610.1\|WP_046417562.1\|2502923_2505635_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|226700

Protein	Function_ID	Function_description	E-value
NZ_CP016610.1\|WP_010895177.1\|2484517_2484826_-\|putative-addiction-module-antidote-protein	gnl\|CDD\|226162	COG3636, COG3636, Predicted transcriptional regulator [Transcription].	4.25578e-44
NZ_CP016610.1\|WP_046420943.1\|2481445_2482207_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|227102	COG4760, COG4760, Predicted membrane protein [Function unknown].	4.05108e-104
NZ_CP016610.1\|WP_120279371.1\|2486951_2487344_-\|hemagglutinin	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	2.95126e-05
NZ_CP016610.1\|WP_046417560.1\|2501571_2502927_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|223561	COG0486, ThdF, Predicted GTPase [General function prediction only].	0
NZ_CP016610.1\|WP_046420946.1\|2484829_2485129_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|162974	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	1.05842e-49
NZ_CP016610.1\|WP_004085093.1\|2507933_2508074_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	1.94002e-12
NZ_CP016610.1\|WP_046420955.1\|2487511_2487904_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	9.66537e-51
NZ_CP016610.1\|WP_046417562.1\|2502923_2505635_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|226700	COG4249, COG4249, Uncharacterized protein containing caspase domain [General function prediction only].	1.23374e-81
NZ_CP016610.1\|WP_046420980.1\|2489453_2489831_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	8.16707e-46
NZ_CP016610.1\|WP_046420959.1\|2487913_2489017_-\|hypothetical-protein	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	1.57998e-08
NZ_CP016610.1\|WP_046420982.1\|2490343_2490721_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	3.51938e-45
NZ_CP016610.1\|WP_046417565.1\|2505725_2507423_-\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NZ_CP016610.1\|WP_075584703.1\|2507467_2507875_-\|ribonuclease-P-protein-component	gnl\|CDD\|179882	PRK04820, rnpA, ribonuclease P protein component.	1.68144e-71

>NZ_CP016610.1|WP_046420982.1|2490343_2490721_-|DUF596-domain-containing-protein
MLTQEQIDDFCEDLGGALDGLWSYIRRAHGIPPHQEDLGSFEERKNDFLFMIGKLLDEGKLKLAENGEFITGTTEELVEMFRKSFPTSDEEMEFGVWFFSDDCPAGAVWVYKGEGENGEDECEWT
>NZ_CP016610.1|WP_046420980.1|2489453_2489831_-|DUF596-domain-containing-protein
MLTQEQIDVICECLVSALDSIWFKIGREYGVSIQQVDPVSFEERKKDFLFIIGKLLDEGRLKLAKKGEFITGTTEELVEMFRKSFPTSDEEMEFGVWFFSDECPAGAVWVYKGEGENGEDYYEWT
>NZ_CP016610.1|WP_046420959.1|2487913_2489017_-|hypothetical-protein
MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLACAGAAGGAAAVVINSLLDRANGAEAASLSPAEKQHRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQAWQDIKAIRSGEKTLEQVALERGQDYVTSILIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALKQIRNNPKGPDLTQKPPGQYIVMQQQKRLDDVKSVVGRRSQKNELVVDGIKFEYVPYDPLVKGGSNKAGNVRVFKSEALTDKQIMNYAQQLAGDVPLKNVSPGVYLAQLSDGTKVTLRSVSSSDQVTKARWTIDIANNPSLREITKEKVELKFR
>NZ_CP016610.1|WP_046420955.1|2487511_2487904_-|DUF596-domain-containing-protein
MLTQKQIDDIYESLGCPLHFLWSYIGSAHGLSHDQVDPDSFEERKNDFLFLIGKLLDDELLKLGNRKAELIMEGTTEELVEMFRSCFPASDEEIDQEVGGLWFFTDCPFVAAWVYKGSGENGEDEYDWCF
>NZ_CP016610.1|WP_120279371.1|2486951_2487344_-|hemagglutinin
MQQQKRLDEVSALVDKKNPRNELVIAGIEVKATPRGSVGGSNQSGTTKVFDSKALTDVQIKDYAQQLTGGVPLEKVKDGVYAAKLSDGTIVNLRSVSKSNDVTQARWTIDIRNNPSFMEAGNKKVELKFR
>NZ_CP016610.1|WP_046420952.1|2485982_2486252_+|hypothetical-protein
MMRQIPVDSSPYQTQSFQMAGDALRLILRWNPVPCCWSMDLYTTTLDQPVAHGHPLANGGGALLLDVVDDHIFGKVAAGSADVAAGTGG
>NZ_CP016610.1|WP_046420949.1|2485212_2485983_+|hypothetical-protein
MITLTHRHVGTVTLDAVMEETHQAELRITENPVESGAMIGDHAVLMPQTVTIAGIVVDYQPQRSPAPAAEEHGAEPLRVLTDRVPFPTDLLPFTAQALRVAQRELSSVIRHATAPQSDGQHAVRPLADWLPDDQPITSGDDATTTGRIAQVYTALRNLQRSGQTLEVHTDVQTYQDMLILSIAARQTQDGSIELVLTVRELFIVKTTSISGVSLPAPKRGRASAQGAAQRHSGQTHPTPVDTEKNRSLLRQMSGLF
>NZ_CP016610.1|WP_046420946.1|2484829_2485129_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MTYTVKRLEEFSDWLKGLKDGLARQRLIKRLRKVQLGNFGDVQPVGGCVFEMREHFGPGWRMYYVQRGNFLIVMLGGGDKSTQQSDIRRAIELAKSLED
>NZ_CP016610.1|WP_010895177.1|2484517_2484826_-|putative-addiction-module-antidote-protein
MTITKKINVSELPEFDAAEYLSSEEEVAAYLTAVLEENDPALLAAALGDIARSRGMSQIAKDSGITREGLYKALRPGSEPRFDTISRVCTALGIRLVAQPMR
>NZ_CP016610.1|WP_046420943.1|2481445_2482207_-|Bax-inhibitor-1/YccA-family-protein
MRSGNPALKESTFLDLGTGSVVVRDGNAMTLNGTVNKTGALLLLALVTSVFAWNQSLGVDGVPLLAARGYMIGGAIGGLILALITAFKKEWSPITAPMYALVEGFFLGAVSAVYEAKFGGIVFQAVLLTFGTLMAMLLAYRSGLIKATENFKLGVMAATGGIALLYLISFVLSFFGIHIPMIHEGGTFGIVFSLFVVVIAALNLVLDFDLIEHGVEQGAPKYMEWYGAFGLMVTLVWLYLECLRLLSKIQSRD
>NZ_CP016610.1|WP_140190082.1|2501291_2501501_-|hypothetical-protein
MTITRPGIHILDNTTYPPQRHWWWQYRRAAALEYLPHIVTEPPRFPDLIPDGIHQHVKHPPNASAKYHR
>NZ_CP016610.1|WP_046417560.1|2501571_2502927_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MSQRSTKMGDTIAAIATASGAAGIGIIRISGSLIKTIATGLGMTTLRPRYAHYTRFLDVDDQVIDDGLALWFPAPHSFTGEDVLELQGHGSPLLLRQLLTRCLDLGARQAHPGEFSERAFLNGKLDLIQAEAIADMIGAADLRAARAARRSLDGVFSRRCEALAQQLIRLRIHVEATIDFAEESLDTLDRAQIRTFLQTLNVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLRESVHFHGLEFVLVDTAGLREEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGNLALADALTSVPRVLWIHNKLDLLTEPPSALDTDVIPVSAMTGAGLETLKTRLRTLLLGETVETIEGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPDELLGRIFSNFCIGK
>NZ_CP016610.1|WP_046417562.1|2502923_2505635_-|polysaccharide-deacetylase-family-protein
MFNKVTPLSSFLLNLCTLLALVACKHQSTPVESASPVTTVSVDVKHSPDPQQAQPLLASLHQQLESYRRIMVLLTDDEVQSPQERVTSSQVGQILFNEGLNQRTAFSKRIDALLASGAPSRFDTLTVILDYIESSPDLYDADRLAFREALNDLDARINHDSALPAIKLRQRIHEDIDALNQIERNYNQEITRLSIPFDRNRGIFIKREKWDDYVAHLRRSYTRKMILHDYGILEAYPIPMEESEHEIFGNELPPKTLVLTFDDGPHRVYTNEIKEILQHYAVPAVFFEVGRNIGRFDRAGKPQLGPLSKITRELIEQGYAVANHSMTHDLLSKLSGNALRKEVINADIILRAVDERRAPLFRFPYGARSAEGLRLLSEIGLQSVRWNIDSLDWADPVPNSVVRRVLLQVAQRQRGIILFHDIHDRAVKALPQILEKLIAEGYQFAGWDGHAFSVNNTHPKSAKTDGEGIETTASRSWATVIGVDDYTKWPKLKYAANDAQAIANTLIQSFGFPSSHVILLKNREATRDKILSVFNDLANGRIQKNDRLFVFFAGHGATRQLSLRRDVGYIIPVDSDPAHFADDAISMTKIQNIAKTFEAKHVLLVMDACYSALGLMPKETQTSPRLATSINRMSRQMLTSGGPDQPVTDKGPNGHSVFTWALLQALSGRADFNDDGLITGTELASYVASAVSTVSAQTPAFGPLLGSQGGEFVFEIPRRKEILTTQNTKRPVKAINLNGPLESTNTTRQAKQLHQNTTAVKLITVKNLHHDEARLLLPPEVKLGKEKLAQPANDLGLQLYKDKSTKELTDQFSDTLELNPHFLRTSKNLGFFYPPQSEYAQHVPWLQNTLKIDHSPVTTQLNGGDIYLQLNNKDKARKTYTTDVDLQPEDSGTKQLGMKLTKL
>NZ_CP016610.1|WP_046417565.1|2505725_2507423_-|membrane-protein-insertase-YidC
MNQTRVLLIFSWLTVATLLWMDWGKNKNETLEISASQNLGVDSNLELEHAVPQINAGAVPVQKDSQLIAVAPKVPVINVKTDVLQLKLDGFSVLAADLLRFPQSKDRGAKPIKLLTDDPNYPYSATTGWVSQSNSPVPNLSTFLPEQPGVSYKLANDQDRLVVPFVWTAANGVSIRRTFTFERGRYAILIRDEIRNGGETPWNAYVFRKLSRVPIPNILNRAMTNPDSFSFNGAVWYSEKGGYERRAFKDYMNDGGLNREIGGGWIALLQHHFFTAWIPQKDQASLYLLAQNGSRDIAELRGPAFTVAPGQSTTTEARLWVGPKLVEQITKEHVKGLDRVVDYSRFQLMALIGQGLFWILSHLNSLLHNWGWAIVGLVVLLRIAMYPLSAAQYKSAAKMRKFQPRLQQLKERYGEDRQKFQQAMMELYKKEKINPMGGCFPILIQMPIFFALYWVLVESVELRQAPWLGWIQDLTTRDPYFILPLLNIVIMWATQKLTPTPAGMDPIAGKMMQVMPLIFGVMMAFVPSGLALYWVINGGLNLLIQWWMIRQHADFSRKRSRENIK
>NZ_CP016610.1|WP_075584703.1|2507467_2507875_-|ribonuclease-P-protein-component
MNSCKRFPRSARICLRSEYYVAFEQGRRYSSVLLRLHHLPTSGPVRLGLVVSRRVDIRAVNRNRIKRALREVMRQIAYKLVPGDYVVVVRQTAKDVSNAELSVALLSLLRRIGALPLAPIDNAMLPFFERNCSRK
>NZ_CP016610.1|WP_004085093.1|2507933_2508074_-|50S-ribosomal-protein-L34
MATKRTYQPSNLKRKRDHGFRARMSTADGRKILARRRAKGRKRLSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP016610_1	1.1\|2076882\|37\|NZ_CP016610\|CRISPRCasFinder	2076882-2076918	37	NZ_CP016610.1	865640-865676	1.0
NZ_CP016610_1	1.2\|2076945\|34\|NZ_CP016610\|CRISPRCasFinder	2076945-2076978	34	NZ_CP016610.1	865580-865613	1.0
NZ_CP016610_2	2.1\|2498024\|37\|NZ_CP016610\|CRISPRCasFinder	2498024-2498060	37	NZ_CP016610.1	865640-865676	1.0
NZ_CP016610_2	2.2\|2498087\|34\|NZ_CP016610\|CRISPRCasFinder	2498087-2498120	34	NZ_CP016610.1	865580-865613	1.0

1. spacer 1.1|2076882|37|NZ_CP016610|CRISPRCasFinder matches to position: 865640-865676, mismatch: 0, identity: 1.0

ggagggtgccgctgctgctgatgtggccggtagcggt	CRISPR spacer
ggagggtgccgctgctgctgatgtggccggtagcggt	Protospacer
*************************************

2. spacer 1.2|2076945|34|NZ_CP016610|CRISPRCasFinder matches to position: 865580-865613, mismatch: 0, identity: 1.0

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
gggtggcggtctgggagtcgatggtgccgccgcg	Protospacer
**********************************

3. spacer 2.1|2498024|37|NZ_CP016610|CRISPRCasFinder matches to position: 865640-865676, mismatch: 0, identity: 1.0

ggagggtgccgctgctgctgatgtggccggtagcggt	CRISPR spacer
ggagggtgccgctgctgctgatgtggccggtagcggt	Protospacer
*************************************

4. spacer 2.2|2498087|34|NZ_CP016610|CRISPRCasFinder matches to position: 865580-865613, mismatch: 0, identity: 1.0

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
gggtggcggtctgggagtcgatggtgccgccgcg	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016610_1	1.1\|2076882\|37\|NZ_CP016610\|CRISPRCasFinder	2076882-2076918	37	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	602553-602589	7	0.811
NZ_CP016610_1	1.1\|2076882\|37\|NZ_CP016610\|CRISPRCasFinder	2076882-2076918	37	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	196086-196122	7	0.811
NZ_CP016610_2	2.1\|2498024\|37\|NZ_CP016610\|CRISPRCasFinder	2498024-2498060	37	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	602553-602589	7	0.811
NZ_CP016610_2	2.1\|2498024\|37\|NZ_CP016610\|CRISPRCasFinder	2498024-2498060	37	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	196086-196122	7	0.811
NZ_CP016610_1	1.1\|2076882\|37\|NZ_CP016610\|CRISPRCasFinder	2076882-2076918	37	NZ_CP048110	Klebsiella michiganensis strain BD177 plasmid unnamed2	28603-28639	9	0.757
NZ_CP016610_2	2.1\|2498024\|37\|NZ_CP016610\|CRISPRCasFinder	2498024-2498060	37	NZ_CP048110	Klebsiella michiganensis strain BD177 plasmid unnamed2	28603-28639	9	0.757
NZ_CP016610_1	1.2\|2076945\|34\|NZ_CP016610\|CRISPRCasFinder	2076945-2076978	34	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	61106-61139	10	0.706
NZ_CP016610_1	1.2\|2076945\|34\|NZ_CP016610\|CRISPRCasFinder	2076945-2076978	34	MN692199	Pectobacterium phage MA12, complete genome	54468-54501	10	0.706
NZ_CP016610_1	1.2\|2076945\|34\|NZ_CP016610\|CRISPRCasFinder	2076945-2076978	34	MN518139	Pectobacterium phage MA11, partial genome	29039-29072	10	0.706
NZ_CP016610_2	2.2\|2498087\|34\|NZ_CP016610\|CRISPRCasFinder	2498087-2498120	34	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	61106-61139	10	0.706
NZ_CP016610_2	2.2\|2498087\|34\|NZ_CP016610\|CRISPRCasFinder	2498087-2498120	34	MN692199	Pectobacterium phage MA12, complete genome	54468-54501	10	0.706
NZ_CP016610_2	2.2\|2498087\|34\|NZ_CP016610\|CRISPRCasFinder	2498087-2498120	34	MN518139	Pectobacterium phage MA11, partial genome	29039-29072	10	0.706
NZ_CP016610_1	1.2\|2076945\|34\|NZ_CP016610\|CRISPRCasFinder	2076945-2076978	34	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	340551-340584	11	0.676
NZ_CP016610_2	2.2\|2498087\|34\|NZ_CP016610\|CRISPRCasFinder	2498087-2498120	34	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	340551-340584	11	0.676

1. spacer 1.1|2076882|37|NZ_CP016610|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.811

ggagggtgccgctgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.************************ * *.*

2. spacer 1.1|2076882|37|NZ_CP016610|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.811

ggagggtgccgctgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.************************ * *.*

3. spacer 2.1|2498024|37|NZ_CP016610|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.811

ggagggtgccgctgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.************************ * *.*

4. spacer 2.1|2498024|37|NZ_CP016610|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.811

ggagggtgccgctgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.************************ * *.*

5. spacer 1.1|2076882|37|NZ_CP016610|CRISPRCasFinder matches to NZ_CP048110 (Klebsiella michiganensis strain BD177 plasmid unnamed2) position: , mismatch: 9, identity: 0.757

ggagggtgccgctgctgctgatgtggccggt-agcggt	CRISPR spacer
tggcggtggcgcttctgctgatgtggccggtcaacaa-	Protospacer
 *. **** **** ***************** *.*..

6. spacer 2.1|2498024|37|NZ_CP016610|CRISPRCasFinder matches to NZ_CP048110 (Klebsiella michiganensis strain BD177 plasmid unnamed2) position: , mismatch: 9, identity: 0.757

ggagggtgccgctgctgctgatgtggccggt-agcggt	CRISPR spacer
tggcggtggcgcttctgctgatgtggccggtcaacaa-	Protospacer
 *. **** **** ***************** *.*..

7. spacer 1.2|2076945|34|NZ_CP016610|CRISPRCasFinder matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
acaccgtggtctgggagtcgacgttgccgccggc	Protospacer
. .. *.**************.* ********

8. spacer 1.2|2076945|34|NZ_CP016610|CRISPRCasFinder matches to MN692199 (Pectobacterium phage MA12, complete genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

9. spacer 1.2|2076945|34|NZ_CP016610|CRISPRCasFinder matches to MN518139 (Pectobacterium phage MA11, partial genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

10. spacer 2.2|2498087|34|NZ_CP016610|CRISPRCasFinder matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
acaccgtggtctgggagtcgacgttgccgccggc	Protospacer
. .. *.**************.* ********

11. spacer 2.2|2498087|34|NZ_CP016610|CRISPRCasFinder matches to MN692199 (Pectobacterium phage MA12, complete genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

12. spacer 2.2|2498087|34|NZ_CP016610|CRISPRCasFinder matches to MN518139 (Pectobacterium phage MA11, partial genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

13. spacer 1.2|2076945|34|NZ_CP016610|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tccacacggtctcggagtggatggtgccgctgtc	Protospacer
     .****** ***** ***********.*.

14. spacer 2.2|2498087|34|NZ_CP016610|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tccacacggtctcggagtggatggtgccgctgtc	Protospacer
     .****** ***** ***********.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

767289 : 779472

Xylella_phage(33.33%)

integrase,tRNA

attL 761672:761686|attR 784656:784670

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
761672:761686	attL	NA	NA	NA	NA
WP_046420592.1\|767289_768702_-	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	2.5e-225	94.9
WP_060870121.1\|768698_769376_-	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	6.2e-12	41.1
WP_046420589.1\|769478_769784_+	hypothetical protein	NA	NA	NA	NA
WP_046420587.1\|769785_770064_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.1e-44	96.7
WP_060871515.1\|771653_771968_+	hypothetical protein	C8CLF7	Xylella_phage	5.6e-32	95.9
WP_046420585.1\|771964_772261_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	4.5e-07	48.1
WP_046420583.1\|772272_773334_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.4e-95	52.7
WP_046420580.1\|773591_774287_-	energy transducer TonB	NA	NA	NA	NA
WP_010894734.1\|774408_775689_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.5e-95	51.2
WP_046420578.1\|776494_777448_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010894730.1\|777745_778540_+	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	8.0e-19	29.7
WP_046420575.1\|778539_779472_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	6.3e-15	36.6
784656:784670	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1138450 : 1151605

Stenotrophomonas_phage(62.5%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046419278.1\|1138450_1139626_+	replication initiation factor	S0F3F7	Stenotrophomonas_phage	2.5e-77	45.5
WP_046419276.1\|1139671_1139986_+	hypothetical protein	NA	NA	NA	NA
WP_046419274.1\|1140109_1140361_+	hypothetical protein	NA	NA	NA	NA
WP_011097859.1\|1140380_1140509_+	hypothetical protein	NA	NA	NA	NA
WP_104993177.1\|1140642_1141932_+	hypothetical protein	Q94MX3	Xanthomonas_phage	9.1e-20	48.3
WP_085808098.1\|1141944_1142274_+\|coat	phage coat protein	NA	NA	NA	NA
WP_085808099.1\|1142273_1143608_+	Zonular occludens toxin	Q4LAU4	Stenotrophomonas_phage	7.2e-113	49.3
WP_057683733.1\|1143747_1144026_-	hypothetical protein	NA	NA	NA	NA
WP_060871500.1\|1144088_1144436_-	hypothetical protein	Q38057	Xanthomonas_phage	3.4e-06	32.4
WP_060870210.1\|1144585_1144999_-	DUF3693 domain-containing protein	S0F314	Stenotrophomonas_phage	3.7e-15	38.5
WP_046420105.1\|1145140_1145476_+	hypothetical protein	NA	NA	NA	NA
WP_081089932.1\|1145477_1145735_+	hypothetical protein	NA	NA	NA	NA
WP_046419283.1\|1145738_1145921_+	hypothetical protein	NA	NA	NA	NA
WP_046419278.1\|1146446_1147622_+	replication initiation factor	S0F3F7	Stenotrophomonas_phage	2.5e-77	45.5
WP_046419276.1\|1147667_1147982_+	hypothetical protein	NA	NA	NA	NA
WP_046419274.1\|1148106_1148358_+	hypothetical protein	NA	NA	NA	NA
WP_011097859.1\|1148377_1148506_+	hypothetical protein	NA	NA	NA	NA
WP_104993177.1\|1148639_1149929_+	hypothetical protein	Q94MX3	Xanthomonas_phage	9.1e-20	48.3
WP_085808098.1\|1149941_1150271_+\|coat	phage coat protein	NA	NA	NA	NA
WP_085808105.1\|1150270_1151605_+	Zonular occludens toxin	Q4LAU4	Stenotrophomonas_phage	5.5e-113	49.3

DBSCAN-SWA_3

1186471 : 1207244

Xylella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046419225.1\|1186471_1187974_-	hypothetical protein	C8CLJ8	Xylella_phage	6.7e-224	86.7
WP_046419223.1\|1187970_1188753_-	hypothetical protein	C8CLJ7	Xylella_phage	7.4e-126	88.5
WP_060872308.1\|1188788_1189187_+	hypothetical protein	NA	NA	NA	NA
WP_046419799.1\|1189183_1190488_-	hypothetical protein	C8CLJ3	Xylella_phage	2.6e-184	83.4
WP_046419220.1\|1192182_1192890_-	hypothetical protein	C8CLJ1	Xylella_phage	1.2e-77	70.6
WP_046419219.1\|1192920_1193166_-	hypothetical protein	C8CLJ0	Xylella_phage	1.6e-34	97.2
WP_046419217.1\|1193135_1195064_-	hypothetical protein	C8CLI9	Xylella_phage	0.0e+00	95.2
WP_046419214.1\|1195060_1195468_-	hypothetical protein	C8CLI8	Xylella_phage	1.3e-68	98.5
WP_046419213.1\|1195488_1196715_-	hypothetical protein	C8CLI7	Xylella_phage	1.6e-215	92.9
WP_046419211.1\|1196763_1197618_-	hypothetical protein	C8CLI6	Xylella_phage	8.4e-107	78.5
WP_046419208.1\|1197619_1199692_-	hypothetical protein	C8CLI5	Xylella_phage	0.0e+00	97.5
WP_080939574.1\|1199694_1201110_-	DNA packaging protein	C8CLI4	Xylella_phage	2.8e-280	98.9
WP_046419203.1\|1201018_1201345_-	hypothetical protein	C8CLI3	Xylella_phage	1.7e-52	96.3
WP_046419200.1\|1201344_1201659_-	hypothetical protein	C8CLI2	Xylella_phage	2.0e-50	95.2
WP_046419794.1\|1201658_1202201_-	hypothetical protein	C8CLI0	Xylella_phage	2.4e-75	87.8
WP_053014138.1\|1202197_1202695_-	lysozyme	C8CLH9	Xylella_phage	4.3e-87	94.4
WP_046419792.1\|1202675_1202900_-	hypothetical protein	C8CLH8	Xylella_phage	5.5e-34	97.3
WP_046419197.1\|1203022_1203745_-	hypothetical protein	C8CLH7	Xylella_phage	1.3e-116	91.7
WP_046419194.1\|1204015_1206544_-	DNA primase	C8CLH6	Xylella_phage	0.0e+00	75.8
WP_046419191.1\|1206680_1207244_-	hypothetical protein	C8CLH5	Xylella_phage	2.3e-68	69.7

DBSCAN-SWA_4

1211053 : 1222432

Xylella_phage(100.0%)

integrase

attL 1208760:1208773|attR 1225049:1225062

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1208760:1208773	attL	NA	NA	NA	NA
WP_046419172.1\|1211053_1211569_+	hypothetical protein	C8CLG9	Xylella_phage	2.9e-09	36.6
WP_046419169.1\|1211565_1211961_+	hypothetical protein	NA	NA	NA	NA
WP_046419166.1\|1211957_1212425_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_004088054.1\|1212421_1212823_+	hypothetical protein	C8CLG7	Xylella_phage	3.6e-68	97.7
WP_046419163.1\|1212819_1213014_+	hypothetical protein	C8CLG6	Xylella_phage	1.4e-25	89.1
WP_046419160.1\|1213045_1213240_+	hypothetical protein	C8CLG5	Xylella_phage	4.5e-16	71.4
WP_046419156.1\|1213728_1215006_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	3.1e-214	87.7
WP_020851622.1\|1215005_1215572_+	DUF2815 family protein	C8CLG2	Xylella_phage	5.8e-104	98.4
WP_080939573.1\|1215639_1216794_+	hypothetical protein	C8CLG1	Xylella_phage	7.7e-196	89.7
WP_085808107.1\|1216795_1218946_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	92.3
WP_046420587.1\|1218942_1219221_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.1e-44	96.7
WP_046420063.1\|1219222_1219669_-	hypothetical protein	NA	NA	NA	NA
WP_046420062.1\|1219753_1221172_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.5e-273	98.1
WP_080939599.1\|1221168_1221423_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	5.7e-35	91.2
WP_046420060.1\|1221412_1222432_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	5.2e-188	97.1
1225049:1225062	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1290122 : 1299209

Salmonella_phage(27.27%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046419977.1\|1290122_1290455_-	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	1.6e-16	40.7
WP_046419976.1\|1290729_1292721_-	ATP-binding protein	NA	NA	NA	NA
WP_046420067.1\|1292973_1293543_+	SocA family protein	I6R0L8	Salmonella_phage	1.3e-18	40.7
WP_046419974.1\|1293542_1293770_+	hypothetical protein	C8CLJ6	Xylella_phage	2.0e-15	66.1
WP_046419971.1\|1293770_1294934_-\|tail	tail fiber protein	H9C1B7	Pectobacterium_phage	9.0e-19	38.5
WP_046419969.1\|1294937_1295498_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.5e-07	26.8
WP_046419967.1\|1295494_1296640_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	5.3e-96	49.0
WP_004085590.1\|1296742_1297039_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	9.0e-24	54.7
WP_004085592.1\|1297041_1297335_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
WP_046419963.1\|1297390_1297744_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	4.1e-23	51.0
WP_046419962.1\|1297740_1298382_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	2.5e-31	37.3
WP_046419672.1\|1298378_1299209_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	6.8e-77	51.8

DBSCAN-SWA_6

1303717 : 1323984

Haemophilus_phage(25.0%)

head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004087249.1\|1303717_1304155_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	3.6e-45	63.1
WP_046419658.1\|1304164_1305661_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	1.9e-122	47.8
WP_080939589.1\|1305661_1306132_-	hypothetical protein	NA	NA	NA	NA
WP_046419655.1\|1306118_1306487_-	hypothetical protein	Q776V7	Haemophilus_phage	2.8e-19	42.9
WP_046419654.1\|1306473_1306953_-	hypothetical protein	M4SN98	Psychrobacter_phage	8.6e-08	28.0
WP_046419652.1\|1306949_1307318_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	1.7e-11	38.1
WP_046419651.1\|1307317_1307671_-	hypothetical protein	NA	NA	NA	NA
WP_046419650.1\|1307736_1308720_-	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	1.1e-49	39.0
WP_046419648.1\|1308729_1309212_-	hypothetical protein	NA	NA	NA	NA
WP_046419647.1\|1309239_1310430_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	2.1e-39	41.7
WP_046419646.1\|1310429_1311275_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	1.6e-28	32.3
WP_046419644.1\|1311347_1311686_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_046419643.1\|1311682_1311964_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	5.2e-13	45.2
WP_080939596.1\|1312012_1313317_-	DUF1073 domain-containing protein	H9C106	Vibrio_phage	2.6e-67	37.1
WP_046419640.1\|1313397_1314948_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	5.4e-112	44.7
WP_046419638.1\|1314898_1315297_-	hypothetical protein	NA	NA	NA	NA
WP_046420065.1\|1315388_1315619_-	hypothetical protein	NA	NA	NA	NA
WP_046419636.1\|1315602_1316064_-	hypothetical protein	NA	NA	NA	NA
WP_046419634.1\|1316053_1316383_-	hypothetical protein	NA	NA	NA	NA
WP_023907472.1\|1316375_1316873_-	lysozyme	A0A2I7RLY1	Vibrio_phage	2.3e-27	53.1
WP_004085696.1\|1317077_1317416_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_010894061.1\|1317402_1317669_-	hypothetical protein	K4NX81	Burkholderia_phage	8.1e-08	40.7
WP_046419632.1\|1317856_1318555_-	hypothetical protein	C8CLH7	Xylella_phage	4.3e-101	81.7
WP_046419893.1\|1318683_1319094_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	3.2e-11	42.1
WP_046419785.1\|1319099_1320560_-	replicative DNA helicase	O80281	Escherichia_phage	5.7e-71	39.7
WP_046419782.1\|1320962_1321424_-	hypothetical protein	A0A0F7LAQ7	uncultured_marine_virus	8.2e-08	36.9
WP_046419776.1\|1321796_1322075_-	hypothetical protein	NA	NA	NA	NA
WP_053014142.1\|1322053_1323166_-	hypothetical protein	C8CLG1	Xylella_phage	3.3e-111	59.5
WP_046419774.1\|1323198_1323984_-	hypothetical protein	C8CLH5	Xylella_phage	2.1e-27	55.9

DBSCAN-SWA_7

1329505 : 1337823

Xylella_phage(45.45%)

integrase

attL 1330045:1330057|attR 1338425:1338437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046419752.1\|1329505_1329895_+	hypothetical protein	C8CLG8	Xylella_phage	1.7e-17	78.6
WP_046419749.1\|1329894_1330311_+	hypothetical protein	C8CLG7	Xylella_phage	3.0e-49	73.9
1330045:1330057	attL	NA	NA	NA	NA
WP_046419748.1\|1330307_1330499_+	hypothetical protein	NA	NA	NA	NA
WP_080939592.1\|1330542_1330818_+	hypothetical protein	NA	NA	NA	NA
WP_046419746.1\|1330840_1331032_+	hypothetical protein	C8CLG6	Xylella_phage	2.8e-18	78.1
WP_046419745.1\|1331052_1331397_+	hypothetical protein	U5P4J6	Shigella_phage	3.0e-15	45.5
WP_046419741.1\|1331436_1332258_+	YfdQ family protein	K7ZMK3	Xanthomonas_citri_phage	5.2e-53	43.3
WP_046419739.1\|1332273_1333191_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	4.6e-58	48.7
WP_046419737.1\|1333187_1334822_+	hypothetical protein	U6C712	Ralstonia_phage	6.8e-97	38.2
WP_046419912.1\|1335193_1336024_+	hypothetical protein	Q3LZN7	Bacteriophage	1.8e-21	46.7
WP_046419733.1\|1336090_1336537_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	1.1e-33	52.9
WP_060870176.1\|1336555_1336804_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	8.0e-34	81.7
WP_046419731.1\|1336803_1337823_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	5.4e-169	87.9
1338425:1338437	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1383365 : 1393944

Haemophilus_phage(23.08%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004085592.1\|1383365_1383659_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
WP_046419676.1\|1383714_1384068_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	9.1e-23	47.0
WP_060870179.1\|1384982_1385999_+	peptidase M4 family protein	NA	NA	NA	NA
WP_081089730.1\|1386006_1386360_+	hypothetical protein	NA	NA	NA	NA
WP_060871504.1\|1386383_1386656_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081089935.1\|1386627_1387194_+	SocA family protein	I6R0L8	Salmonella_phage	1.4e-17	33.1
WP_046419974.1\|1387193_1387421_+	hypothetical protein	C8CLJ6	Xylella_phage	2.0e-15	66.1
WP_046419971.1\|1387421_1388585_-\|tail	tail fiber protein	H9C1B7	Pectobacterium_phage	9.0e-19	38.5
WP_046419969.1\|1388588_1389149_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.5e-07	26.8
WP_046419967.1\|1389145_1390291_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	5.3e-96	49.0
WP_004085590.1\|1390393_1390690_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	9.0e-24	54.7
WP_004085592.1\|1390692_1390986_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
WP_046419963.1\|1391041_1391395_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	4.1e-23	51.0
WP_046419962.1\|1391391_1392033_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	2.5e-31	37.3
WP_046419672.1\|1392029_1392860_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	6.8e-77	51.8
WP_046419669.1\|1392856_1393174_-	hypothetical protein	NA	NA	NA	NA
WP_046419667.1\|1393173_1393944_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	1.4e-28	34.1

DBSCAN-SWA_9

1404061 : 1416148

Vibrio_phage(27.27%)

integrase,head,terminase

attL 1414405:1414418|attR 1418839:1418852

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046419646.1\|1404061_1404907_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	1.6e-28	32.3
WP_046419644.1\|1404979_1405318_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_046419643.1\|1405314_1405596_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	5.2e-13	45.2
WP_080939596.1\|1405644_1406949_-	DUF1073 domain-containing protein	H9C106	Vibrio_phage	2.6e-67	37.1
WP_046419640.1\|1407029_1408580_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	5.4e-112	44.7
WP_046419638.1\|1408530_1408929_-	hypothetical protein	NA	NA	NA	NA
WP_046420065.1\|1409020_1409251_-	hypothetical protein	NA	NA	NA	NA
WP_046419636.1\|1409234_1409696_-	hypothetical protein	NA	NA	NA	NA
WP_046419634.1\|1409685_1410015_-	hypothetical protein	NA	NA	NA	NA
WP_023907472.1\|1410007_1410505_-	lysozyme	A0A2I7RLY1	Vibrio_phage	2.3e-27	53.1
WP_004085696.1\|1410709_1411048_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_010894061.1\|1411034_1411301_-	hypothetical protein	K4NX81	Burkholderia_phage	8.1e-08	40.7
WP_046419893.1\|1412314_1412725_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	3.2e-11	42.1
WP_046419631.1\|1412772_1413462_-	hypothetical protein	NA	NA	NA	NA
WP_104993183.1\|1413442_1414435_-	DUF1376 domain-containing protein	A0A0P0I481	Acinetobacter_phage	2.9e-18	44.3
1414405:1414418	attL	NA	NA	NA	NA
WP_080939588.1\|1414808_1415129_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.4e-27	80.3
WP_046419629.1\|1415128_1416148_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.2e-173	90.3
1418839:1418852	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016610

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection